From davidk at ci.uchicago.edu Thu Jan 2 12:04:06 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Thu, 2 Jan 2014 12:04:06 -0600 (CST) Subject: [Swift-commit] r7456 - trunk/bin Message-ID: <20140102180406.99187178884@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-02 12:04:05 -0600 (Thu, 02 Jan 2014) New Revision: 7456 Modified: trunk/bin/swiftrun Log: Adjust for case sensitivity in xml keys Modified: trunk/bin/swiftrun =================================================================== --- trunk/bin/swiftrun 2013-12-31 12:17:27 UTC (rev 7455) +++ trunk/bin/swiftrun 2014-01-02 18:04:05 UTC (rev 7456) @@ -28,29 +28,29 @@ # List of xml shortcuts my %site_aliases = ( - 'allocationstepsize' => 'globus.allocationstepsize', - 'delaybase' => 'karajan.delaybase', + 'allocationstepsize' => 'globus.allocationStepSize', + 'delaybase' => 'karajan.delayBase', 'filesystem' => 'filesystem', - 'highoverallocation' => 'globus.highoverallocation', - 'initialscore' => 'karajan.initialscore', + 'highoverallocation' => 'globus.highOverallocation', + 'initialscore' => 'karajan.initialScore', 'internalhostname' => 'globus.internalhostname', - 'jobgranularity' => 'globus.nodegranularity', + 'jobgranularity' => 'globus.nodeGranularity', 'jobmanager' => 'jobmanager', 'jobproject' => 'globus.project', 'jobqueue' => 'globus.queue', - 'jobtype' => 'globus.jobtype', + 'jobtype' => 'globus.jobType', 'jobwalltime' => 'globus.maxtime', 'jobwalltimereserve' => 'globus.reserve', - 'lowoverallocation' => 'globus.lowoverallocation', + 'lowoverallocation' => 'globus.lowOverallocation', 'maxjobs' => 'globus.slots', - 'maxnodesperjob' => 'globus.maxnodes', - 'maxsubmitrate' => 'karajan.maxsubmitrate', - 'overallocationdecayfactor' => 'globus.overallocationdecayfactor', - 'remotemonitorenabled' => 'globus.remotemonitorenabled', + 'maxnodesperjob' => 'globus.maxNodes', + 'maxsubmitrate' => 'karajan.maxSubmitRate', + 'overallocationdecayfactor' => 'globus.overallocationDecayFactor', + 'remotemonitorenabled' => 'globus.remoteMonitorEnabled', 'slurm' => 'globus.slurm', 'taskdir' => 'globus.scratch', - 'tasksperworker' => 'globus.jobspernode', - 'taskthrottle' => 'karajan.jobthrottle', + 'tasksperworker' => 'globus.jobsPerNode', + 'taskthrottle' => 'karajan.jobThrottle', 'taskwalltime' => 'globus.maxwalltime', 'workdir' => 'workdir', 'workerloglevel' => 'globus.workerlogginglevel', @@ -450,6 +450,7 @@ push(@new_swift_args, "-Drestart.log.name=$run_directory/restart.log"); push(@new_swift_args, "-swiftoutlog=$run_directory/swift.out"); push(@new_swift_args, "-runid " . basename($run_directory)); +push( @new_swift_args, sprintf( "-logfile $run_directory/run%03s.log", $run_number )); # Write swift configuration files &write_sites("sites.xml") if defined( $option_siteslist ) || defined($properties{site}); @@ -469,7 +470,6 @@ else { push( @new_swift_args, $option ); } } -push( @new_swift_args, sprintf( "-logfile $run_directory/run%03s.log", $run_number )); foreach my $arg( @new_swift_args ) { print "$arg "; From davidk at ci.uchicago.edu Thu Jan 2 13:09:50 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Thu, 2 Jan 2014 13:09:50 -0600 (CST) Subject: [Swift-commit] r7457 - branches/release-0.95/bin Message-ID: <20140102190950.44BFF9CD2A@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-02 13:09:50 -0600 (Thu, 02 Jan 2014) New Revision: 7457 Modified: branches/release-0.95/bin/swiftrun Log: xml key case fix Modified: branches/release-0.95/bin/swiftrun =================================================================== --- branches/release-0.95/bin/swiftrun 2014-01-02 18:04:05 UTC (rev 7456) +++ branches/release-0.95/bin/swiftrun 2014-01-02 19:09:50 UTC (rev 7457) @@ -28,29 +28,29 @@ # List of xml shortcuts my %site_aliases = ( - 'allocationstepsize' => 'globus.allocationstepsize', - 'delaybase' => 'karajan.delaybase', + 'allocationstepsize' => 'globus.allocationStepSize', + 'delaybase' => 'karajan.delayBase', 'filesystem' => 'filesystem', - 'highoverallocation' => 'globus.highoverallocation', - 'initialscore' => 'karajan.initialscore', + 'highoverallocation' => 'globus.highOverallocation', + 'initialscore' => 'karajan.initialScore', 'internalhostname' => 'globus.internalhostname', - 'jobgranularity' => 'globus.nodegranularity', + 'jobgranularity' => 'globus.nodeGranularity', 'jobmanager' => 'jobmanager', 'jobproject' => 'globus.project', 'jobqueue' => 'globus.queue', - 'jobtype' => 'globus.jobtype', + 'jobtype' => 'globus.jobType', 'jobwalltime' => 'globus.maxtime', 'jobwalltimereserve' => 'globus.reserve', - 'lowoverallocation' => 'globus.lowoverallocation', + 'lowoverallocation' => 'globus.lowOverallocation', 'maxjobs' => 'globus.slots', - 'maxnodesperjob' => 'globus.maxnodes', - 'maxsubmitrate' => 'karajan.maxsubmitrate', - 'overallocationdecayfactor' => 'globus.overallocationdecayfactor', - 'remotemonitorenabled' => 'globus.remotemonitorenabled', + 'maxnodesperjob' => 'globus.maxNodes', + 'maxsubmitrate' => 'karajan.maxSubmitRate', + 'overallocationdecayfactor' => 'globus.overallocationDecayFactor', + 'remotemonitorenabled' => 'globus.remoteMonitorEnabled', 'slurm' => 'globus.slurm', 'taskdir' => 'globus.scratch', - 'tasksperworker' => 'globus.jobspernode', - 'taskthrottle' => 'karajan.jobthrottle', + 'tasksperworker' => 'globus.jobsPerNode', + 'taskthrottle' => 'karajan.jobThrottle', 'taskwalltime' => 'globus.maxwalltime', 'workdir' => 'workdir', 'workerloglevel' => 'globus.workerlogginglevel', @@ -450,6 +450,7 @@ push(@new_swift_args, "-Drestart.log.name=$run_directory/restart.log"); push(@new_swift_args, "-swiftoutlog=$run_directory/swift.out"); push(@new_swift_args, "-runid " . basename($run_directory)); +push( @new_swift_args, sprintf( "-logfile $run_directory/run%03s.log", $run_number )); # Write swift configuration files &write_sites("sites.xml") if defined( $option_siteslist ) || defined($properties{site}); @@ -469,7 +470,6 @@ else { push( @new_swift_args, $option ); } } -push( @new_swift_args, sprintf( "-logfile $run_directory/run%03s.log", $run_number )); foreach my $arg( @new_swift_args ) { print "$arg "; From davidk at ci.uchicago.edu Thu Jan 2 15:30:54 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Thu, 2 Jan 2014 15:30:54 -0600 (CST) Subject: [Swift-commit] r7458 - branches/release-0.95/bin Message-ID: <20140102213054.E801B178884@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-02 15:30:54 -0600 (Thu, 02 Jan 2014) New Revision: 7458 Modified: branches/release-0.95/bin/swiftrun Log: Fix for walltimes Modified: branches/release-0.95/bin/swiftrun =================================================================== --- branches/release-0.95/bin/swiftrun 2014-01-02 19:09:50 UTC (rev 7457) +++ branches/release-0.95/bin/swiftrun 2014-01-02 21:30:54 UTC (rev 7458) @@ -166,11 +166,9 @@ elsif ( $property eq "taskdir" ) { return "$value\n"; } elsif ( $property eq "filesystem" ) { return "\n"; } - else { - my ( $xmlnamespace, $xmlproperty ) = split(/\./, $site_aliases{ $propertyStart }); - if ( defined($xmlnamespace) && defined($xmlproperty)) { - return "" . $value . "\n"; - } + my ( $xmlnamespace, $xmlproperty ) = split(/\./, $site_aliases{ $propertyStart }); + if ( defined($xmlnamespace) && defined($xmlproperty)) { + return "" . $value . "\n"; } } From hategan at ci.uchicago.edu Fri Jan 3 16:31:18 2014 From: hategan at ci.uchicago.edu (hategan at ci.uchicago.edu) Date: Fri, 3 Jan 2014 16:31:18 -0600 (CST) Subject: [Swift-commit] r7459 - trunk/libexec Message-ID: <20140103223118.0270A9CFEB@svn.ci.uchicago.edu> Author: hategan Date: 2014-01-03 16:31:17 -0600 (Fri, 03 Jan 2014) New Revision: 7459 Modified: trunk/libexec/swift-int-staging.k Log: chain exception if reading stdout/err files fails Modified: trunk/libexec/swift-int-staging.k =================================================================== --- trunk/libexec/swift-int-staging.k 2014-01-02 21:30:54 UTC (rev 7458) +++ trunk/libexec/swift-int-staging.k 2014-01-03 22:31:17 UTC (rev 7459) @@ -85,7 +85,8 @@ cdmfile := cdm:file() try { - log(LOG:DEBUG, "JOB_START jobid={jobid} tr={tr}", if (arguments != null, (" arguments=", arguments)), " tmpdir={tmpdir} host={rhost}") + log(LOG:DEBUG, "JOB_START jobid={jobid} tr={tr}", if (arguments != null, (" arguments=", arguments)), + " tmpdir={tmpdir} host={rhost}") setProgress(progress, "Submitting") @@ -172,7 +173,7 @@ } else { setProgress(progress, "Failed but can retry") - exception := try(exception(readErrorFiles(ddir, jobid, stdout, stderr)), prev) + exception := try(exception(readErrorFiles(ddir, jobid, stdout, stderr), prev), prev) log(LOG:DEBUG, "APPLICATION_EXCEPTION jobid={jobid} - Application exception: ", exception) throw( From swift at ci.uchicago.edu Wed Jan 8 13:25:03 2014 From: swift at ci.uchicago.edu (swift at ci.uchicago.edu) Date: Wed, 8 Jan 2014 13:25:03 -0600 (CST) Subject: [Swift-commit] cog r3855 Message-ID: <20140108192503.E21E28D000A6@bridled.ci.uchicago.edu> ------------------------------------------------------------------------ r3855 | hategan | 2014-01-08 13:23:01 -0600 (Wed, 08 Jan 2014) | 1 line Don't try to lock soft image things when no soft image has been requested ------------------------------------------------------------------------ Index: modules/provider-coaster/resources/worker.pl =================================================================== --- modules/provider-coaster/resources/worker.pl (revision 3854) +++ modules/provider-coaster/resources/worker.pl (working copy) @@ -2291,14 +2291,17 @@ unlock($SOFT_IMAGE_CREATE_LOCK); } } - # wait until the soft image is created - wlog DEBUG, "Waiting for soft image\n"; - my $createLock = readLock("$SOFT_IMAGE_DIR/.create"); - wlog DEBUG, "Got soft image\n"; - # no need to hold lock after that - unlock($createLock); - $ENV{SOFTIMAGE} = $SOFT_IMAGE_DIR; + if (defined $SOFT_IMAGE_DIR) { + # wait until the soft image is created + wlog DEBUG, "Waiting for soft image\n"; + my $createLock = readLock("$SOFT_IMAGE_DIR/.create"); + wlog DEBUG, "Got soft image\n"; + # no need to hold lock after that + unlock($createLock); + + $ENV{SOFTIMAGE} = $SOFT_IMAGE_DIR; + } my $cwd = getcwd(); # wlog DEBUG, "CWD: $cwd\n"; From davidk at ci.uchicago.edu Wed Jan 8 15:57:26 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 8 Jan 2014 15:57:26 -0600 (CST) Subject: [Swift-commit] r7460 - trunk/bin Message-ID: <20140108215726.7869E9CFD2@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-08 15:57:26 -0600 (Wed, 08 Jan 2014) New Revision: 7460 Modified: trunk/bin/swiftlog Log: Updated swiftlog script Modified: trunk/bin/swiftlog =================================================================== --- trunk/bin/swiftlog 2014-01-03 22:31:17 UTC (rev 7459) +++ trunk/bin/swiftlog 2014-01-08 21:57:26 UTC (rev 7460) @@ -1,187 +1,98 @@ -#!/usr/bin/perl -w +#!/usr/bin/env python -use strict; -use warnings; -use File::Basename; -use Class::Struct; +import sys +import os +import operator -# Task structure -struct Task => { - app => '$', - arguments => '$', - host => '$', - replicationGroup => '$', - stageIn => '$', - stageOut => '$', - startTime => '$', - stopTime => '$', - taskNumber => '$', - thread => '$', - workdir => '$', -}; +if len(sys.argv) != 2: + sys.exit("Usage: %s " % sys.argv[0]) -# Hash for storing all tasks -my %tasks = (); -my $taskCounter = 1; +# Open log file +log_directory = os.path.normpath(sys.argv[1]) +log_filename = os.path.join(log_directory, os.path.basename(log_directory) + ".log") +log_file = open(log_filename, "r") -# Print basic usage info -sub usage() { - &crash("Usage: $0 "); -} +# Class definition for a single Task +class Task: + app = '' + arguments = '' + host = '' + stageIn = '' + stageOut = '' + startTime = '' + stopTime = '' + taskNumber = '' + thread = '' + workdir = '' -# Print error message and exit -sub crash() { - print STDERR "@_\n"; - exit(1); -} +# Dictionary containing all tasks +tasks = {} +taskCounter = 1 -# Get an existing task of a given jobid, or create a new one and return it -sub getTask() { - if(defined($tasks{$_[0]})) { - return $tasks{$_[0]}; - } else { - my $t = Task->new(); - $tasks{$_[0]} = $t; - return $t; - } -} +# Retrieve Task from dictionary, or create new +def getTask(taskid): + if taskid in tasks: + return tasks[taskid] + else: + t = Task() + tasks[taskid] = t + return tasks[taskid] -# Record that a task has started -sub taskStarted() { - # 2013-12-17 16:42:13,135+0000 DEBUG swift JOB_START jobid=sleep-k5t2pajl tr=sleep arguments=[1] tmpdir=sleep-run002/jobs/k/sleep-k5t2pajl host=westmere - $_[0] =~ s/jobid=|tr=|arguments=|tmpdir=|host=//g; - my @entryArray = split(/\s+/, $_[0]); +# In a log entry, find values that start with value= +def getValue(entry, value): + entry_array = entry.split() + value += '=' + for word in entry_array: + if word.startswith(value): + return word.split(value, 1)[1] - my $date = $entryArray[1]; - my $taskid = $entryArray[5]; - my $app = $entryArray[6]; - my $workdir = $entryArray[-2]; - my $host = $entryArray[-1]; - my $arguments = &getBracketedText($_[0]); +# Get timestamp of a log entry +def getTime(entry): + timestamp = entry.split()[1] + return timestamp.split(',')[0] - my $t = &getTask($taskid); - $t->taskNumber($taskCounter); - $t->app($app); - $t->workdir($workdir); - $t->arguments($arguments); - $t->startTime($date); - $t->host($host); - $tasks{$taskid} = $t; - $taskCounter += 1; -} +# Get all text between [ and ] +def getBracketedText(entry): + return entry.partition('[')[-1].rpartition(']')[0] -sub taskEnded() { - # 2013-12-17 16:42:38,520+0000 DEBUG swift JOB_END jobid=bash-1vngpnjl - $_[0] =~ s/jobid=//g; - my @entryArray = split(/\s+/, $_[0]); +# Parse log +for line in iter(log_file): - my $date = $entryArray[1]; - my $taskid = $entryArray[-1]; - - my $t = &getTask($taskid); - $t->stopTime($date); -} + if 'JOB_START' in line: + taskid = getValue(line, "jobid") + task = getTask(taskid) + task.app = getValue(line, "tr") + task.startTime = getTime(line) + task.workdir = getValue(line, "tmpdir") + task.host = getValue(line, "host") + task.arguments = getBracketedText(line) + task.taskNumber = taskCounter + taskCounter = taskCounter+1 -sub taskStagingIn() { - # 2013-12-18 17:38:23,372+0000 INFO swift START jobid=cat-a3mafpjl - Staging in files [file://localhost/data.txt, file://localhost/data2.txt] - $_[0] =~ s/jobid=//g; - my @entryArray = split(/\s+/, $_[0]); - my $date = $entryArray[1]; - my $taskid = $entryArray[5]; - my $files = &getBracketedText($_[0]); - my $t = &getTask($taskid); - $t->stageIn($files); -} + elif 'JOB_END' in line: + taskid = getValue(line, "jobid") + task = getTask(taskid) + task.stopTime = getTime(line) -sub taskStagingOut() { - # 2013-12-18 17:38:23,349+0000 DEBUG swift FILE_STAGE_OUT_START srcname=catsn.0008.out srcdir=catsn-run016/shared/output srchost=westmere destdir=output desthost=localhost provider=file jobid=cat-83mafpjl - $_[0] =~ s/jobid=|srcname=//g; - my @entryArray = split(/\s+/, $_[0]); + elif "Staging in files" in line: + taskid = getValue(line, "jobid") + task = getTask(taskid) + task.stageIn = getBracketedText(line) - my $taskid = $entryArray[-1]; - my $file = $entryArray[5]; - - my $t = &getTask($taskid); - if(defined($t->stageOut())) { - $t->stageOut($t->stageOut() . "$file "); - } else { - $t->stageOut("$file"); - } -} + elif "FILE_STAGE_OUT_START" in line: + taskid = getValue(line, "jobid") + task = getTask(taskid) + file_out = getValue(line, "srcname") + task.stageOut += file_out + " " -sub getBracketedText() { - my $result = ""; - $_[0] =~ /\[([^\]]*)\]/x; - if(defined($1)) { - $result = $1; - $result =~ s/,//g; - } - return $result; -} - -sub printTasks() { - no warnings; - foreach my $key (sort { $tasks{$a}->taskNumber <=> $tasks{$b}->taskNumber } keys %tasks) { - my $value = $tasks{$key}; - printf "Task %s\n" . - "\tApp name = %s\n" . - "\tCommand line arguments = %s\n" . - "\tHost = %s\n" . - "\tStart time = %s\n" . - "\tStop time = %s\n" . - "\tWork directory = %s\n" . - "\tStaged in files = %s\n" . - "\tStaged out files = %s\n\n", - $value->taskNumber, - $value->app, - $value->arguments, - $value->host, - $value->startTime, - $value->stopTime, - $value->workdir, - $value->stageIn, - $value->stageOut, - } -} - -# Check usage -if ( !$ARGV[0] ) { - &usage(); -} - -# Verify $run_directory -my $run_directory = $ARGV[0]; -if ( ! -d "$run_directory" ) { - &crash("Directory $run_directory does not exist!"); -} - -# Open Swift log -my $swift_log_name = "$run_directory/" . basename($run_directory) . ".log"; -open(SWIFTLOG, $swift_log_name) || &crash("Unable to open log file $swift_log_name"); - -# Read log, send entries we care about to the right place -while(my $line = ) { - - if ( $line =~ m/JOB_START/o ) { - &taskStarted($line); - next; - } - - elsif ( $line =~ m/JOB_END/o ) { - &taskEnded($line); - next; - } - - elsif ( $line =~ m/Staging in files/o ) { - &taskStagingIn($line); - next; - } - - elsif ( $line =~ m/FILE_STAGE_OUT_START/o ) { - &taskStagingOut($line); - next; - } -} - # Print tasks -&printTasks(); +for t in sorted(tasks.values(), key=operator.attrgetter('taskNumber')): + print "Task: %s" % t.taskNumber + print "\tApp name: %s" % t.app + print "\tCommand line arguments: %s" % t.arguments + print "\tHost: %s" % t.host + print "\tStart time: %s" % t.startTime + print "\tStop time: %s" % t.stopTime + print "\tWork directory: %s" % t.workdir + print "\tStaged in: %s" % t.stageIn + print "\tStaged out: %s\n" % t.stageOut From davidk at ci.uchicago.edu Wed Jan 8 15:57:59 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 8 Jan 2014 15:57:59 -0600 (CST) Subject: [Swift-commit] r7461 - branches/release-0.95/bin Message-ID: <20140108215759.E454B9CFD2@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-08 15:57:59 -0600 (Wed, 08 Jan 2014) New Revision: 7461 Modified: branches/release-0.95/bin/swiftlog Log: Updated swiftlog script Modified: branches/release-0.95/bin/swiftlog =================================================================== --- branches/release-0.95/bin/swiftlog 2014-01-08 21:57:26 UTC (rev 7460) +++ branches/release-0.95/bin/swiftlog 2014-01-08 21:57:59 UTC (rev 7461) @@ -1,187 +1,98 @@ -#!/usr/bin/perl -w +#!/usr/bin/env python -use strict; -use warnings; -use File::Basename; -use Class::Struct; +import sys +import os +import operator -# Task structure -struct Task => { - app => '$', - arguments => '$', - host => '$', - replicationGroup => '$', - stageIn => '$', - stageOut => '$', - startTime => '$', - stopTime => '$', - taskNumber => '$', - thread => '$', - workdir => '$', -}; +if len(sys.argv) != 2: + sys.exit("Usage: %s " % sys.argv[0]) -# Hash for storing all tasks -my %tasks = (); -my $taskCounter = 1; +# Open log file +log_directory = os.path.normpath(sys.argv[1]) +log_filename = os.path.join(log_directory, os.path.basename(log_directory) + ".log") +log_file = open(log_filename, "r") -# Print basic usage info -sub usage() { - &crash("Usage: $0 "); -} +# Class definition for a single Task +class Task: + app = '' + arguments = '' + host = '' + stageIn = '' + stageOut = '' + startTime = '' + stopTime = '' + taskNumber = '' + thread = '' + workdir = '' -# Print error message and exit -sub crash() { - print STDERR "@_\n"; - exit(1); -} +# Dictionary containing all tasks +tasks = {} +taskCounter = 1 -# Get an existing task of a given jobid, or create a new one and return it -sub getTask() { - if(defined($tasks{$_[0]})) { - return $tasks{$_[0]}; - } else { - my $t = Task->new(); - $tasks{$_[0]} = $t; - return $t; - } -} +# Retrieve Task from dictionary, or create new +def getTask(taskid): + if taskid in tasks: + return tasks[taskid] + else: + t = Task() + tasks[taskid] = t + return tasks[taskid] -# Record that a task has started -sub taskStarted() { - # 2013-12-17 16:42:13,135+0000 DEBUG swift JOB_START jobid=sleep-k5t2pajl tr=sleep arguments=[1] tmpdir=sleep-run002/jobs/k/sleep-k5t2pajl host=westmere - $_[0] =~ s/jobid=|tr=|arguments=|tmpdir=|host=//g; - my @entryArray = split(/\s+/, $_[0]); +# In a log entry, find values that start with value= +def getValue(entry, value): + entry_array = entry.split() + value += '=' + for word in entry_array: + if word.startswith(value): + return word.split(value, 1)[1] - my $date = $entryArray[1]; - my $taskid = $entryArray[5]; - my $app = $entryArray[6]; - my $workdir = $entryArray[-2]; - my $host = $entryArray[-1]; - my $arguments = &getBracketedText($_[0]); +# Get timestamp of a log entry +def getTime(entry): + timestamp = entry.split()[1] + return timestamp.split(',')[0] - my $t = &getTask($taskid); - $t->taskNumber($taskCounter); - $t->app($app); - $t->workdir($workdir); - $t->arguments($arguments); - $t->startTime($date); - $t->host($host); - $tasks{$taskid} = $t; - $taskCounter += 1; -} +# Get all text between [ and ] +def getBracketedText(entry): + return entry.partition('[')[-1].rpartition(']')[0] -sub taskEnded() { - # 2013-12-17 16:42:38,520+0000 DEBUG swift JOB_END jobid=bash-1vngpnjl - $_[0] =~ s/jobid=//g; - my @entryArray = split(/\s+/, $_[0]); +# Parse log +for line in iter(log_file): - my $date = $entryArray[1]; - my $taskid = $entryArray[-1]; - - my $t = &getTask($taskid); - $t->stopTime($date); -} + if 'JOB_START' in line: + taskid = getValue(line, "jobid") + task = getTask(taskid) + task.app = getValue(line, "tr") + task.startTime = getTime(line) + task.workdir = getValue(line, "tmpdir") + task.host = getValue(line, "host") + task.arguments = getBracketedText(line) + task.taskNumber = taskCounter + taskCounter = taskCounter+1 -sub taskStagingIn() { - # 2013-12-18 17:38:23,372+0000 INFO swift START jobid=cat-a3mafpjl - Staging in files [file://localhost/data.txt, file://localhost/data2.txt] - $_[0] =~ s/jobid=//g; - my @entryArray = split(/\s+/, $_[0]); - my $date = $entryArray[1]; - my $taskid = $entryArray[5]; - my $files = &getBracketedText($_[0]); - my $t = &getTask($taskid); - $t->stageIn($files); -} + elif 'JOB_END' in line: + taskid = getValue(line, "jobid") + task = getTask(taskid) + task.stopTime = getTime(line) -sub taskStagingOut() { - # 2013-12-18 17:38:23,349+0000 DEBUG swift FILE_STAGE_OUT_START srcname=catsn.0008.out srcdir=catsn-run016/shared/output srchost=westmere destdir=output desthost=localhost provider=file jobid=cat-83mafpjl - $_[0] =~ s/jobid=|srcname=//g; - my @entryArray = split(/\s+/, $_[0]); + elif "Staging in files" in line: + taskid = getValue(line, "jobid") + task = getTask(taskid) + task.stageIn = getBracketedText(line) - my $taskid = $entryArray[-1]; - my $file = $entryArray[5]; - - my $t = &getTask($taskid); - if(defined($t->stageOut())) { - $t->stageOut($t->stageOut() . "$file "); - } else { - $t->stageOut("$file"); - } -} + elif "FILE_STAGE_OUT_START" in line: + taskid = getValue(line, "jobid") + task = getTask(taskid) + file_out = getValue(line, "srcname") + task.stageOut += file_out + " " -sub getBracketedText() { - my $result = ""; - $_[0] =~ /\[([^\]]*)\]/x; - if(defined($1)) { - $result = $1; - $result =~ s/,//g; - } - return $result; -} - -sub printTasks() { - no warnings; - foreach my $key (sort { $tasks{$a}->taskNumber <=> $tasks{$b}->taskNumber } keys %tasks) { - my $value = $tasks{$key}; - printf "Task %s\n" . - "\tApp name = %s\n" . - "\tCommand line arguments = %s\n" . - "\tHost = %s\n" . - "\tStart time = %s\n" . - "\tStop time = %s\n" . - "\tWork directory = %s\n" . - "\tStaged in files = %s\n" . - "\tStaged out files = %s\n\n", - $value->taskNumber, - $value->app, - $value->arguments, - $value->host, - $value->startTime, - $value->stopTime, - $value->workdir, - $value->stageIn, - $value->stageOut, - } -} - -# Check usage -if ( !$ARGV[0] ) { - &usage(); -} - -# Verify $run_directory -my $run_directory = $ARGV[0]; -if ( ! -d "$run_directory" ) { - &crash("Directory $run_directory does not exist!"); -} - -# Open Swift log -my $swift_log_name = "$run_directory/" . basename($run_directory) . ".log"; -open(SWIFTLOG, $swift_log_name) || &crash("Unable to open log file $swift_log_name"); - -# Read log, send entries we care about to the right place -while(my $line = ) { - - if ( $line =~ m/JOB_START/o ) { - &taskStarted($line); - next; - } - - elsif ( $line =~ m/JOB_END/o ) { - &taskEnded($line); - next; - } - - elsif ( $line =~ m/Staging in files/o ) { - &taskStagingIn($line); - next; - } - - elsif ( $line =~ m/FILE_STAGE_OUT_START/o ) { - &taskStagingOut($line); - next; - } -} - # Print tasks -&printTasks(); +for t in sorted(tasks.values(), key=operator.attrgetter('taskNumber')): + print "Task: %s" % t.taskNumber + print "\tApp name: %s" % t.app + print "\tCommand line arguments: %s" % t.arguments + print "\tHost: %s" % t.host + print "\tStart time: %s" % t.startTime + print "\tStop time: %s" % t.stopTime + print "\tWork directory: %s" % t.workdir + print "\tStaged in: %s" % t.stageIn + print "\tStaged out: %s\n" % t.stageOut From davidk at ci.uchicago.edu Thu Jan 9 11:44:18 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Thu, 9 Jan 2014 11:44:18 -0600 (CST) Subject: [Swift-commit] r7464 - trunk/docs/userguide Message-ID: <20140109174418.0A1469CD2A@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-09 11:44:17 -0600 (Thu, 09 Jan 2014) New Revision: 7464 Modified: trunk/docs/userguide/configuration Log: Wording Modified: trunk/docs/userguide/configuration =================================================================== --- trunk/docs/userguide/configuration 2014-01-08 22:13:41 UTC (rev 7463) +++ trunk/docs/userguide/configuration 2014-01-09 17:44:17 UTC (rev 7464) @@ -33,11 +33,9 @@ ----- The details of this file will be explained more later. Let's first look -at an example of running Swift with this new file. +at an example of running Swift. Using the swift.properties the new Swift +command a user would run is: -Using the swift.properties file above, the new Swift command a user would run -is: - ----- $ swift script.swift ----- @@ -123,9 +121,8 @@ Using site templates ~~~~~~~~~~~~~~~~~~~~ -This new configuration mechanism should make it easier to use site templates. -To use this, set the environment variable $SWIFT_SITE_CONF to a directory -containing a swift.properties file. This swift.properties can contain multiple +Swift recognizes an environmnet variable called $SWIFT_SITE_CONF, which points to +a directory containing a swift.properties file. This swift.properties can contain multiple site definitions for the various queues available on the cluster you are using. Your local swift.properties then does not need to define the entire site. It @@ -145,8 +142,10 @@ Site definitions ^^^^^^^^^^^^^^^^ Site definitions in the swift.properties files begin with "site". + The second word is the name of the site you are defining. In these examples we will define a site called westmere. + The third word is the property. For example: @@ -253,7 +252,7 @@ site.westmere.workdir=/scratch/midway/davidkelly999 ----- -However, it is also simplify this by grouping these properties together with +However, you can also simplify this by grouping site properties together with curly brackets. ------ @@ -287,8 +286,7 @@ General Swift properties ~~~~~~~~~~~~~~~~~~~~~~~~ -Various aspects of the behavior of Swift can be configured through general -Swift properties. Below is a list of properties: +Swift behavior can be configured through general Swift properties. Below is a list of properties: [options="header"] |================ From davidk at ci.uchicago.edu Thu Jan 9 12:38:04 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Thu, 9 Jan 2014 12:38:04 -0600 (CST) Subject: [Swift-commit] r7465 - trunk/bin Message-ID: <20140109183804.09EA79CD2A@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-09 12:38:03 -0600 (Thu, 09 Jan 2014) New Revision: 7465 Modified: trunk/bin/swiftrun Log: Applying some fixes from 0.95 Modified: trunk/bin/swiftrun =================================================================== --- trunk/bin/swiftrun 2014-01-09 17:44:17 UTC (rev 7464) +++ trunk/bin/swiftrun 2014-01-09 18:38:03 UTC (rev 7465) @@ -166,11 +166,9 @@ elsif ( $property eq "taskdir" ) { return "$value\n"; } elsif ( $property eq "filesystem" ) { return "\n"; } - else { - my ( $xmlnamespace, $xmlproperty ) = split(/\./, $site_aliases{ $propertyStart }); - if ( defined($xmlnamespace) && defined($xmlproperty)) { - return "" . $value . "\n"; - } + my ( $xmlnamespace, $xmlproperty ) = split(/\./, $site_aliases{ $propertyStart }); + if ( defined($xmlnamespace) && defined($xmlproperty)) { + return "" . $value . "\n"; } } @@ -364,7 +362,7 @@ # Create/increment run directory my $run_number = 0; -my @run_directories = ; +my @run_directories = ; if(@run_directories) { $run_number = $run_directories[-1]; From davidk at ci.uchicago.edu Thu Jan 9 22:22:20 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Thu, 9 Jan 2014 22:22:20 -0600 (CST) Subject: [Swift-commit] r7466 - SwiftTutorials/swift-cray-tutorial/doc Message-ID: <20140110042220.D53FE9CD2A@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-09 22:22:20 -0600 (Thu, 09 Jan 2014) New Revision: 7466 Modified: SwiftTutorials/swift-cray-tutorial/doc/README Log: Update queue Modified: SwiftTutorials/swift-cray-tutorial/doc/README =================================================================== --- SwiftTutorials/swift-cray-tutorial/doc/README 2014-01-09 18:38:03 UTC (rev 7465) +++ SwiftTutorials/swift-cray-tutorial/doc/README 2014-01-10 04:22:20 UTC (rev 7466) @@ -637,6 +637,7 @@ To run large jobs, we can specify: ----- + medium 2 8 8 From davidk at ci.uchicago.edu Fri Jan 10 10:10:04 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Fri, 10 Jan 2014 10:10:04 -0600 (CST) Subject: [Swift-commit] r7467 - trunk/bin Message-ID: <20140110161005.20EE3178884@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-10 10:10:00 -0600 (Fri, 10 Jan 2014) New Revision: 7467 Modified: trunk/bin/swiftrun Log: When setting workdirectory to $RUNDIRECTORY, don't create if using -listconfig Modified: trunk/bin/swiftrun =================================================================== --- trunk/bin/swiftrun 2014-01-10 04:22:20 UTC (rev 7466) +++ trunk/bin/swiftrun 2014-01-10 16:10:00 UTC (rev 7467) @@ -372,7 +372,9 @@ $run_directory = getcwd() . "/" . sprintf "run%03s", $run_number; $ENV{RUNDIRECTORY} = "$run_directory"; -mkdir($run_directory) || &swiftquit("Unable to create run directory $run_directory"); +if(!$option_listconfig) { + mkdir($run_directory) || &swiftquit("Unable to create run directory $run_directory"); +} # Set @sites array from comma separated list of sites if(defined($option_siteslist)) { From davidk at ci.uchicago.edu Fri Jan 10 10:10:28 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Fri, 10 Jan 2014 10:10:28 -0600 (CST) Subject: [Swift-commit] r7468 - branches/release-0.95/bin Message-ID: <20140110161028.6E888178884@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-10 10:10:27 -0600 (Fri, 10 Jan 2014) New Revision: 7468 Modified: branches/release-0.95/bin/swiftrun Log: When setting workdirectory to $RUNDIRECTORY, don't create if using -listconfig Modified: branches/release-0.95/bin/swiftrun =================================================================== --- branches/release-0.95/bin/swiftrun 2014-01-10 16:10:00 UTC (rev 7467) +++ branches/release-0.95/bin/swiftrun 2014-01-10 16:10:27 UTC (rev 7468) @@ -372,7 +372,9 @@ $run_directory = getcwd() . "/" . sprintf "run%03s", $run_number; $ENV{RUNDIRECTORY} = "$run_directory"; -mkdir($run_directory) || &swiftquit("Unable to create run directory $run_directory"); +if(!$option_listconfig) { + mkdir($run_directory) || &swiftquit("Unable to create run directory $run_directory"); +} # Set @sites array from comma separated list of sites if(defined($option_siteslist)) { From davidk at ci.uchicago.edu Fri Jan 10 13:25:10 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Fri, 10 Jan 2014 13:25:10 -0600 (CST) Subject: [Swift-commit] r7469 - in trunk/tests: . bugs documentation/tutorial functions language/should-not-work language/working language-behaviour/IO language-behaviour/arrays language-behaviour/broken language-behaviour/cleanup language-behaviour/compounds language-behaviour/control_structures language-behaviour/datatypes language-behaviour/logic language-behaviour/mappers language-behaviour/math language-behaviour/params language-behaviour/procedures language-behaviour/strings language-behaviour/variables local Message-ID: <20140110192510.DAA4D178884@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-10 13:25:10 -0600 (Fri, 10 Jan 2014) New Revision: 7469 Added: trunk/tests/bugs/swift.properties trunk/tests/documentation/tutorial/swift.properties trunk/tests/functions/swift.properties trunk/tests/language-behaviour/IO/swift.properties trunk/tests/language-behaviour/arrays/swift.properties trunk/tests/language-behaviour/broken/swift.properties trunk/tests/language-behaviour/cleanup/swift.properties trunk/tests/language-behaviour/compounds/swift.properties trunk/tests/language-behaviour/control_structures/swift.properties trunk/tests/language-behaviour/datatypes/swift.properties trunk/tests/language-behaviour/logic/swift.properties trunk/tests/language-behaviour/mappers/swift.properties trunk/tests/language-behaviour/math/swift.properties trunk/tests/language-behaviour/params/swift.properties trunk/tests/language-behaviour/procedures/swift.properties trunk/tests/language-behaviour/strings/swift.properties trunk/tests/language-behaviour/variables/swift.properties trunk/tests/language/should-not-work/swift.properties trunk/tests/language/working/swift.properties trunk/tests/local/swift.properties Removed: trunk/tests/documentation/tutorial/tc.template.data trunk/tests/functions/tc.template.data trunk/tests/language-behaviour/mappers/tc.template.mix.data trunk/tests/language/working/tc.template.mix.data trunk/tests/local/tc.template.data Modified: trunk/tests/functions/201-sprintf-k.check.sh trunk/tests/functions/202-sprintf-k-array.check.sh trunk/tests/suite.sh Log: Use new-style config for local site testing (group-all-local) Added: trunk/tests/bugs/swift.properties =================================================================== --- trunk/tests/bugs/swift.properties (rev 0) +++ trunk/tests/bugs/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,2 @@ +site=local +sitedir.keep=true Added: trunk/tests/documentation/tutorial/swift.properties =================================================================== --- trunk/tests/documentation/tutorial/swift.properties (rev 0) +++ trunk/tests/documentation/tutorial/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,2 @@ +site=local +sitedir.keep=true Deleted: trunk/tests/documentation/tutorial/tc.template.data =================================================================== --- trunk/tests/documentation/tutorial/tc.template.data 2014-01-10 16:10:27 UTC (rev 7468) +++ trunk/tests/documentation/tutorial/tc.template.data 2014-01-10 19:25:10 UTC (rev 7469) @@ -1,23 +0,0 @@ -#This is the transformation catalog. -# -#It comes pre-configured with a number of simple transformations with -#paths that are likely to work on a linux box. However, on some systems, -#the paths to these executables will be different (for example, sometimes -#some of these programs are found in /usr/bin rather than in /bin) -# -#NOTE WELL: fields in this file must be separated by tabs, not spaces; and -#there must be no trailing whitespace at the end of each line. -# -# sitename transformation path INSTALLED platform profiles -localhost echo /bin/echo INSTALLED INTEL32::LINUX null -localhost tr /usr/bin/tr INSTALLED INTEL32::LINUX null -localhost cat /bin/cat INSTALLED INTEL32::LINUX null -localhost ls /bin/ls INSTALLED INTEL32::LINUX null -localhost grep /bin/grep INSTALLED INTEL32::LINUX null -localhost sort /bin/sort INSTALLED INTEL32::LINUX null -localhost paste /bin/paste INSTALLED INTEL32::LINUX null -localhost cp /bin/cp INSTALLED INTEL32::LINUX null -localhost wc /usr/bin/wc INSTALLED INTEL32::LINUX null -localhost touch /bin/touch INSTALLED INTEL32::LINUX null -localhost sleep /bin/sleep INSTALLED INTEL32::LINUX null -localhost wcl /tmp/wcl INSTALLED INTEL32::LINUX null Modified: trunk/tests/functions/201-sprintf-k.check.sh =================================================================== --- trunk/tests/functions/201-sprintf-k.check.sh 2014-01-10 16:10:27 UTC (rev 7468) +++ trunk/tests/functions/201-sprintf-k.check.sh 2014-01-10 19:25:10 UTC (rev 7469) @@ -2,13 +2,7 @@ set -x -OUTPUT=$( cat 201-sprintf-k.stdout ) -[[ $? == 0 ]] || exit 1 -echo $OUTPUT grep "ready.*delayed" -[[ $? == 0 ]] || exit 1 - -OUTPUT=$( grep delayed: 201-sprintf-k.stdout | cut -d ' ' -f 2 ) -[[ $? == 0 ]] || exit 1 +OUTPUT=$( grep delayed: 201-sprintf-k.stdout | cut -d ' ' -f 2 | sort -n ) [[ ${OUTPUT[@]} == "4 6 8 10 12" ]] || exit 1 exit 0 Modified: trunk/tests/functions/202-sprintf-k-array.check.sh =================================================================== --- trunk/tests/functions/202-sprintf-k-array.check.sh 2014-01-10 16:10:27 UTC (rev 7468) +++ trunk/tests/functions/202-sprintf-k-array.check.sh 2014-01-10 19:25:10 UTC (rev 7469) @@ -2,20 +2,7 @@ set -x -# Grab partial output -OUTPUT=$( grep delayed: 202-sprintf-k-array.stdout | head -4 | cut -d ' ' -f 2 ) -[[ $? == 0 ]] || exit 1 +OUTPUT=$( grep delayed: 202-sprintf-k-array.stdout | cut -d ' ' -f 2 | sort -n ) +[[ ${OUTPUT[@]} == "array 4 6 8 10 12" ]] || exit 1 -# NOTE: we cannot guarantee that the "12" is before "array" - -# First four outputs are in order -[[ ${OUTPUT[@]} == "4 6 8 10" ]] || exit 1 - -# Grab whole output -OUTPUT=$( grep delayed: 202-sprintf-k-array.stdout | cut -d ' ' -f 2 ) - -# Output "10" is before "array" -echo ${OUTPUT[@]} | grep "10.*array" -[[ $? == 0 ]] || exit 1 - exit 0 Added: trunk/tests/functions/swift.properties =================================================================== --- trunk/tests/functions/swift.properties (rev 0) +++ trunk/tests/functions/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,3 @@ +site=local +sitedir.keep=true +taskThrottle=12 Deleted: trunk/tests/functions/tc.template.data =================================================================== --- trunk/tests/functions/tc.template.data 2014-01-10 16:10:27 UTC (rev 7468) +++ trunk/tests/functions/tc.template.data 2014-01-10 19:25:10 UTC (rev 7469) @@ -1,9 +0,0 @@ -# sitename transformation path INSTALLED platform profiles -localhost echo /bin/echo INSTALLED INTEL32::LINUX null -localhost cat /bin/cat INSTALLED INTEL32::LINUX null -localhost ls /bin/ls INSTALLED INTEL32::LINUX null -localhost grep /bin/grep INSTALLED INTEL32::LINUX null -localhost sort /bin/sort INSTALLED INTEL32::LINUX null -localhost paste /bin/paste INSTALLED INTEL32::LINUX null -localhost cp /bin/cp INSTALLED INTEL32::LINUX null -localhost sleep /bin/sleep INSTALLED INTEL32::LINUX null Added: trunk/tests/language/should-not-work/swift.properties =================================================================== --- trunk/tests/language/should-not-work/swift.properties (rev 0) +++ trunk/tests/language/should-not-work/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,2 @@ +site=local +sitedir.keep=true Added: trunk/tests/language/working/swift.properties =================================================================== --- trunk/tests/language/working/swift.properties (rev 0) +++ trunk/tests/language/working/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,8 @@ +site=local +sitedir.keep=true +app.local.generate=$GROUP/generate +app.local.process=$GROUP/process +app.local.combine=$GROUP/process +app.local.echo=echo +app.local.cat=cat +app.local.wc=wc Deleted: trunk/tests/language/working/tc.template.mix.data =================================================================== --- trunk/tests/language/working/tc.template.mix.data 2014-01-10 16:10:27 UTC (rev 7468) +++ trunk/tests/language/working/tc.template.mix.data 2014-01-10 19:25:10 UTC (rev 7469) @@ -1,5 +0,0 @@ - -localhost generate _DIR_/generate INSTALLED INTEL32::LINUX null -localhost process _DIR_/process INSTALLED INTEL32::LINUX null -localhost combine _DIR_/combine INSTALLED INTEL32::LINUX null -localhost wc /usr/bin/wc INSTALLED INTEL32::LINUX null Added: trunk/tests/language-behaviour/IO/swift.properties =================================================================== --- trunk/tests/language-behaviour/IO/swift.properties (rev 0) +++ trunk/tests/language-behaviour/IO/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,2 @@ +site=local +sitedir.keep=true Added: trunk/tests/language-behaviour/arrays/swift.properties =================================================================== --- trunk/tests/language-behaviour/arrays/swift.properties (rev 0) +++ trunk/tests/language-behaviour/arrays/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,2 @@ +site=local +sitedir.keep=true Added: trunk/tests/language-behaviour/broken/swift.properties =================================================================== --- trunk/tests/language-behaviour/broken/swift.properties (rev 0) +++ trunk/tests/language-behaviour/broken/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,2 @@ +site=local +sitedir.keep=true Added: trunk/tests/language-behaviour/cleanup/swift.properties =================================================================== --- trunk/tests/language-behaviour/cleanup/swift.properties (rev 0) +++ trunk/tests/language-behaviour/cleanup/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,2 @@ +site=local +sitedir.keep=true Added: trunk/tests/language-behaviour/compounds/swift.properties =================================================================== --- trunk/tests/language-behaviour/compounds/swift.properties (rev 0) +++ trunk/tests/language-behaviour/compounds/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,2 @@ +site=local +sitedir.keep=true Added: trunk/tests/language-behaviour/control_structures/swift.properties =================================================================== --- trunk/tests/language-behaviour/control_structures/swift.properties (rev 0) +++ trunk/tests/language-behaviour/control_structures/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,2 @@ +site=local +sitedir.keep=true Added: trunk/tests/language-behaviour/datatypes/swift.properties =================================================================== --- trunk/tests/language-behaviour/datatypes/swift.properties (rev 0) +++ trunk/tests/language-behaviour/datatypes/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,2 @@ +site=local +sitedir.keep=true Added: trunk/tests/language-behaviour/logic/swift.properties =================================================================== --- trunk/tests/language-behaviour/logic/swift.properties (rev 0) +++ trunk/tests/language-behaviour/logic/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,2 @@ +site=local +sitedir.keep=true Added: trunk/tests/language-behaviour/mappers/swift.properties =================================================================== --- trunk/tests/language-behaviour/mappers/swift.properties (rev 0) +++ trunk/tests/language-behaviour/mappers/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,5 @@ +site=local +sitedir.keep=true +app.local.echo_sh=$GROUP/760-csv-mapper.sh +app.local.echo=echo +app.local.touch=touch Deleted: trunk/tests/language-behaviour/mappers/tc.template.mix.data =================================================================== --- trunk/tests/language-behaviour/mappers/tc.template.mix.data 2014-01-10 16:10:27 UTC (rev 7468) +++ trunk/tests/language-behaviour/mappers/tc.template.mix.data 2014-01-10 19:25:10 UTC (rev 7469) @@ -1,2 +0,0 @@ - -localhost echo_sh _DIR_/760-csv-mapper.sh INSTALLED INTEL32::LINUX null Added: trunk/tests/language-behaviour/math/swift.properties =================================================================== --- trunk/tests/language-behaviour/math/swift.properties (rev 0) +++ trunk/tests/language-behaviour/math/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,2 @@ +site=local +sitedir.keep=true Added: trunk/tests/language-behaviour/params/swift.properties =================================================================== --- trunk/tests/language-behaviour/params/swift.properties (rev 0) +++ trunk/tests/language-behaviour/params/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,2 @@ +site=local +sitedir.keep=true Added: trunk/tests/language-behaviour/procedures/swift.properties =================================================================== --- trunk/tests/language-behaviour/procedures/swift.properties (rev 0) +++ trunk/tests/language-behaviour/procedures/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,2 @@ +site=local +sitedir.keep=true Added: trunk/tests/language-behaviour/strings/swift.properties =================================================================== --- trunk/tests/language-behaviour/strings/swift.properties (rev 0) +++ trunk/tests/language-behaviour/strings/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,2 @@ +site=local +sitedir.keep=true Added: trunk/tests/language-behaviour/variables/swift.properties =================================================================== --- trunk/tests/language-behaviour/variables/swift.properties (rev 0) +++ trunk/tests/language-behaviour/variables/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,2 @@ +site=local +sitedir.keep=true Added: trunk/tests/local/swift.properties =================================================================== --- trunk/tests/local/swift.properties (rev 0) +++ trunk/tests/local/swift.properties 2014-01-10 19:25:10 UTC (rev 7469) @@ -0,0 +1,5 @@ +site=local +sitedir.keep=true +app.local.append=$GROUP/append.sh +app.local.echo=echo +app.local.cat=cat Deleted: trunk/tests/local/tc.template.data =================================================================== --- trunk/tests/local/tc.template.data 2014-01-10 16:10:27 UTC (rev 7468) +++ trunk/tests/local/tc.template.data 2014-01-10 19:25:10 UTC (rev 7469) @@ -1,2 +0,0 @@ -* * * INSTALLED INTEL32::LINUX null -localhost append _DIR_/append.sh INSTALLED INTEL32::LINUX null Modified: trunk/tests/suite.sh =================================================================== --- trunk/tests/suite.sh 2014-01-10 16:10:27 UTC (rev 7468) +++ trunk/tests/suite.sh 2014-01-10 19:25:10 UTC (rev 7469) @@ -120,11 +120,9 @@ fi export STRESS="S$STRESS" -if [ -x "$ENV_FILE" ] +if [ -n "$ENV_FILE" ] then - source $ENV_FILE -else - echo "Could not load $ENV_FILE" + source $ENV_FILE || echo "Could not load $ENV_FILE" fi # Iterations per test (may want to run each test multiple times?) @@ -846,13 +844,7 @@ TEST_SHOULD_FAIL=$(( ! $? )) OUTPUT=$NAME.stdout - monitored_exec $TIMEOUT swift \ - -wrapperlog.always.transfer true \ - -sitedir.keep true \ - -config swift.properties \ - -sites.file sites.xml \ - -tc.file tc.data \ - $CDM $SWIFTSCRIPT $ARGS + monitored_exec $TIMEOUT swift $CDM $SWIFTSCRIPT $ARGS TEST_SHOULD_FAIL=0 if [ -x "$GROUP/$CHECKSCRIPT" ]; then @@ -981,53 +973,6 @@ output_report package "swift-$DATE.tar.gz" } -# Generate sites.xml -group_sites_xml() { - - # Determine template - if [ -f "$GROUP/sites.template.xml" ]; then - TEMPLATE="$GROUP/sites.template.xml" - elif [ -f "$GROUP/gensites.template" ]; then - TEMPLATE=$( cat $GROUP/gensites.template ) - else - TEMPLATE="$TESTDIR/sites/local/sites.template.xml" - fi - - # Give default to _WORK_ if undefined in swift.properties - if [ -z "$WORK" ] - then - export WORK=$PWD/swiftwork - fi - - # Call gensites - TEMPLATE_DIRNAME=`dirname $TEMPLATE` - TEMPLATE=`basename $TEMPLATE` - gensites -L $TEMPLATE_DIRNAME $TEMPLATE > sites.xml 2>&1 -} - -# Generate tc.data -group_tc_data() { - - # Gensites will create a tc.data file if it is being used - if [ -f "$GROUP/gensites.template" ]; then - return - fi - - if [ -f $GROUP/tc.template.data ]; then - sed "s at _DIR_@$GROUP@" < $GROUP/tc.template.data > tc.data - [ $? != 0 ] && crash "Could not create tc.data!" - echo "Using: $GROUP/tc.template.data" - else - cp -v $SWIFT_HOME/etc/tc.data . - [ $? != 0 ] && crash "Could not copy tc.data!" - fi - if [ -f $GROUP/tc.template.mix.data ]; then - sed "s at _DIR_@$GROUP@" < $GROUP/tc.template.mix.data >> tc.data - [ $? != 0 ] && crash "Could not create tc.data!" - echo "Mixing: $GROUP/tc.template.mix.data" - fi -} - # Generate the CDM file, fs.data group_fs_data() { if [ -f $GROUP/fs.template.data ]; then @@ -1044,9 +989,6 @@ if [ -f $GROUP/swift.properties ]; then cp -v $GROUP/swift.properties . [ $? != 0 ] && crash "Could not copy swift.properties!" - else - cp -v $SWIFT_HOME/etc/swift.properties . - [ $? != 0 ] && crash "Could not copy swift.properties!" fi } @@ -1130,8 +1072,6 @@ pushd $TESTNAMEDIR > /dev/null 2>&1 cp $TEST . group_swift_properties - group_sites_xml - group_tc_data group_fs_data start_row swift_test_case $TESTNAME From davidk at ci.uchicago.edu Fri Jan 10 15:47:55 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Fri, 10 Jan 2014 15:47:55 -0600 (CST) Subject: [Swift-commit] r7470 - SwiftTutorials/swift-cray-tutorial/doc Message-ID: <20140110214755.3A7F6178884@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-10 15:47:54 -0600 (Fri, 10 Jan 2014) New Revision: 7470 Modified: SwiftTutorials/swift-cray-tutorial/doc/README Log: Updated path Modified: SwiftTutorials/swift-cray-tutorial/doc/README =================================================================== --- SwiftTutorials/swift-cray-tutorial/doc/README 2014-01-10 19:25:10 UTC (rev 7469) +++ SwiftTutorials/swift-cray-tutorial/doc/README 2014-01-10 21:47:54 UTC (rev 7470) @@ -61,7 +61,7 @@ ----- $ cd $HOME -$ tar xzf /home/users/p01532/swift-cray-tutorial.tgz +$ tar xzf /home/users/p01537/swift-cray-tutorial.tgz $ cd swift-cray-tutorial $ source setup.sh # You must run this with "source" ! ----- From hategan at ci.uchicago.edu Fri Jan 10 16:07:40 2014 From: hategan at ci.uchicago.edu (hategan at ci.uchicago.edu) Date: Fri, 10 Jan 2014 16:07:40 -0600 (CST) Subject: [Swift-commit] r7471 - in trunk/src/org/griphyn/vdl: engine karajan Message-ID: <20140110220740.6910A178884@svn.ci.uchicago.edu> Author: hategan Date: 2014-01-10 16:07:39 -0600 (Fri, 10 Jan 2014) New Revision: 7471 Modified: trunk/src/org/griphyn/vdl/engine/Karajan.java trunk/src/org/griphyn/vdl/karajan/Loader.java Log: allow user to specify a string to run on the command line using the -e option Modified: trunk/src/org/griphyn/vdl/engine/Karajan.java =================================================================== --- trunk/src/org/griphyn/vdl/engine/Karajan.java 2014-01-10 21:47:54 UTC (rev 7470) +++ trunk/src/org/griphyn/vdl/engine/Karajan.java 2014-01-10 22:07:39 UTC (rev 7471) @@ -107,7 +107,7 @@ compile(args[0], System.out, false); } - public static void compile(String in, PrintStream out, boolean provenanceEnabled) throws CompilationException { + public static void compile(Object in, PrintStream out, boolean provenanceEnabled) throws CompilationException { Karajan karajan = new Karajan(); StringTemplateGroup templates; try { @@ -140,7 +140,7 @@ out.println(code.toString()); } - public static ProgramDocument parseProgramXML(String defs) + public static ProgramDocument parseProgramXML(Object in) throws XmlException, IOException { XmlOptions options = new XmlOptions(); @@ -150,7 +150,15 @@ options.setLoadLineNumbers(); ProgramDocument programDoc; - programDoc = ProgramDocument.Factory.parse(new File(defs), options); + if (in instanceof File) { + programDoc = ProgramDocument.Factory.parse((File) in, options); + } + else if (in instanceof String) { + programDoc = ProgramDocument.Factory.parse((String) in, options); + } + else { + throw new IllegalArgumentException("Don't know how to parse a " + in.getClass().getName()); + } if(programDoc.validate(options)) { logger.debug("Validation of XML intermediate file was successful"); Modified: trunk/src/org/griphyn/vdl/karajan/Loader.java =================================================================== --- trunk/src/org/griphyn/vdl/karajan/Loader.java 2014-01-10 21:47:54 UTC (rev 7470) +++ trunk/src/org/griphyn/vdl/karajan/Loader.java 2014-01-10 22:07:39 UTC (rev 7471) @@ -21,6 +21,8 @@ package org.griphyn.vdl.karajan; import java.io.BufferedReader; +import java.io.ByteArrayInputStream; +import java.io.ByteArrayOutputStream; import java.io.File; import java.io.FileInputStream; import java.io.FileNotFoundException; @@ -53,7 +55,6 @@ import org.globus.cog.karajan.scheduler.WeightedHostScoreScheduler; import org.globus.cog.karajan.util.KarajanProperties; import org.globus.cog.util.ArgumentParser; -import org.globus.cog.util.ArgumentParserException; import org.globus.cog.util.TextFileLoader; import org.globus.swift.data.Director; import org.griphyn.vdl.engine.Karajan; @@ -89,6 +90,7 @@ public static final String ARG_REDUCED_LOGGING = "reduced.logging"; public static final String ARG_MINIMAL_LOGGING = "minimal.logging"; public static final String ARG_PAUSE_ON_START = "pause.on.start"; + public static final String ARG_EXECUTE = "e"; public static final String CONST_VDL_OPERATION = "vdl:operation"; public static final String VDL_OPERATION_RUN = "run"; @@ -106,9 +108,23 @@ String runID = makeRunId(ap); try { - String project = ap.getStringValue(ArgumentParser.DEFAULT); - checkValidProject(project); - String projectName = projectName(project); + String project; + String source; + String projectName; + if (ap.isPresent(ARG_EXECUTE)) { + project = ""; + projectName = ""; + source = ap.getStringValue(ARG_EXECUTE); + if (ap.hasValue(ArgumentParser.DEFAULT)) { + throw new IllegalArgumentException("-" + ARG_EXECUTE + " and are mutually exclusive"); + } + } + else { + project = ap.getStringValue(ArgumentParser.DEFAULT); + checkValidProject(project); + projectName = projectName(project); + source = null; + } setupLogging(ap, projectName, runID); VDL2Config config = loadConfig(ap); @@ -123,6 +139,7 @@ loadCDM(ap); } + WrapperNode tree = null; if (project.endsWith(".swift")) { try { project = compile(project, ap.isPresent(ARG_RECOMPILE), provenanceEnabled); @@ -134,8 +151,21 @@ logger.debug("Exception when compiling " + project, pe); System.exit(3); } + tree = load(project); } - WrapperNode tree = load(project); + else if (source != null) { + try { + String kml = compileString(source, provenanceEnabled); + tree = loadFromString(kml); + } + catch (ParsingException pe) { + // the compiler should have already logged useful + // error messages, so this log line is just for + // debugging + logger.debug("Exception when compiling " + project, pe); + System.exit(3); + } + } tree.setProperty("name", projectName + "-" + runID); tree.setProperty(WrapperNode.FILENAME, project); @@ -230,7 +260,7 @@ System.out.println(loadVersion()); System.exit(0); } - if (!ap.hasValue(ArgumentParser.DEFAULT)) { + if (!ap.hasValue(ArgumentParser.DEFAULT) && !ap.isPresent(ARG_EXECUTE)) { System.out.println(loadVersion()); error("No Swift script specified"); } @@ -364,7 +394,7 @@ try { FileOutputStream f = new FileOutputStream(kml); - Karajan.compile(xml.getAbsolutePath(), new PrintStream(f), provenanceEnabled); + Karajan.compile(new File(xml.getAbsolutePath()), new PrintStream(f), provenanceEnabled); f.close(); } catch (Error e) { @@ -392,7 +422,34 @@ } return kml.getAbsolutePath(); } + + public static String compileString(String source, boolean provenanceEnabled) throws + ParsingException, IncorrectInvocationException, + CompilationException, IOException { + debugText("SWIFTSCRIPT", source); + ByteArrayOutputStream swiftx = new ByteArrayOutputStream(); + VDLt2VDLx.compile(new ByteArrayInputStream(source.getBytes()), + new PrintStream(swiftx)); + + ByteArrayOutputStream kml = new ByteArrayOutputStream(); + try { + Karajan.compile(swiftx.toString(), new PrintStream(kml), provenanceEnabled); + } + catch (Error e) { + throw e; + } + catch (CompilationException e) { + throw e; + } + catch (Exception e) { + throw new CompilationException( + "Failed to convert .xml to .kml for input string", e); + } + return kml.toString(); + } + + /** Enter the text content of given files into the log @param name A token printed in the log @@ -412,6 +469,14 @@ logger.warn("Could not open: " + file); } } + + public static void debugText(String name, String source) { + Logger textLogger = Logger.getLogger("swift.textfiles"); + if (textLogger.isDebugEnabled()) { + textLogger.debug("BEGIN " + name + ":\n" + source + "\n"); + textLogger.debug("END " + name + ":"); + } + } static void debugSitesText(VDL2Config config) { String poolFile = config.getPoolFile(); @@ -555,7 +620,8 @@ "reports warnings only"); ap.addFlag(ARG_PAUSE_ON_START, "Pauses execution on start. Useful for " + "attaching a debugger or profiler to the swift process"); - + ap.addOption(ARG_EXECUTE, "Runs the swift script code contained in ", + "string", ArgumentParser.OPTIONAL); Map desc = VDL2ConfigProperties.getPropertyDescriptions(); for (Map.Entry e : desc.entrySet()) { From davidk at ci.uchicago.edu Mon Jan 13 14:53:33 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Mon, 13 Jan 2014 14:53:33 -0600 (CST) Subject: [Swift-commit] r7472 - branches/release-0.95/libexec Message-ID: <20140113205333.23EA79CC96@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-13 14:53:32 -0600 (Mon, 13 Jan 2014) New Revision: 7472 Modified: branches/release-0.95/libexec/swift-int-staging.k Log: Applying fix from trunk: chain exception if reading stdout/err files fails Modified: branches/release-0.95/libexec/swift-int-staging.k =================================================================== --- branches/release-0.95/libexec/swift-int-staging.k 2014-01-10 22:07:39 UTC (rev 7471) +++ branches/release-0.95/libexec/swift-int-staging.k 2014-01-13 20:53:32 UTC (rev 7472) @@ -85,7 +85,8 @@ cdmfile := cdm:file() try { - log(LOG:DEBUG, "JOB_START jobid={jobid} tr={tr}", if (arguments != null, (" arguments=", arguments)), " tmpdir={tmpdir} host={rhost}") + log(LOG:DEBUG, "JOB_START jobid={jobid} tr={tr}", if (arguments != null, (" arguments=", arguments)), + " tmpdir={tmpdir} host={rhost}") setProgress(progress, "Submitting") @@ -172,7 +173,7 @@ } else { setProgress(progress, "Failed but can retry") - exception := try(exception(readErrorFiles(ddir, jobid, stdout, stderr)), prev) + exception := try(exception(readErrorFiles(ddir, jobid, stdout, stderr), prev), prev) log(LOG:DEBUG, "APPLICATION_EXCEPTION jobid={jobid} - Application exception: ", exception) throw( From wozniak at ci.uchicago.edu Tue Jan 14 11:33:03 2014 From: wozniak at ci.uchicago.edu (wozniak at ci.uchicago.edu) Date: Tue, 14 Jan 2014 11:33:03 -0600 (CST) Subject: [Swift-commit] r7473 - usertools/plotter/src/plotter Message-ID: <20140114173303.5D0C99DA0D@svn.ci.uchicago.edu> Author: wozniak Date: 2014-01-14 11:33:03 -0600 (Tue, 14 Jan 2014) New Revision: 7473 Modified: usertools/plotter/src/plotter/Lines.java Log: Additional error check Modified: usertools/plotter/src/plotter/Lines.java =================================================================== --- usertools/plotter/src/plotter/Lines.java 2014-01-13 20:53:32 UTC (rev 7472) +++ usertools/plotter/src/plotter/Lines.java 2014-01-14 17:33:03 UTC (rev 7473) @@ -7,7 +7,9 @@ import java.awt.Color; import java.awt.geom.Rectangle2D; import java.io.*; -import java.util.*; +import java.util.ArrayList; +import java.util.List; +import java.util.Properties; import org.apache.commons.io.IOUtils; import org.apache.xmlgraphics.java2d.GraphicContext; @@ -15,8 +17,10 @@ import org.jfree.chart.ChartFactory; import org.jfree.chart.JFreeChart; import org.jfree.chart.annotations.XYTextAnnotation; +import org.jfree.chart.axis.LogAxis; import org.jfree.chart.axis.LogarithmicAxis; import org.jfree.chart.axis.NumberAxis; +import org.jfree.chart.axis.ValueAxis; import org.jfree.chart.plot.PlotOrientation; import org.jfree.chart.plot.XYPlot; import org.jfree.chart.renderer.xy.XYLineAndShapeRenderer; @@ -117,6 +121,8 @@ System.exit(1); } double[][] array = LineReader.array(lines); + if (array.length == 0) + throw new UserInputException("file has no data: " + name); if (array[0].length != 2) throw new UserInputException("file is not two-column: " + name); data.add(array); @@ -273,7 +279,7 @@ if (ymin != null || ymax != null) { - NumberAxis axis = (NumberAxis) plot.getRangeAxis(); + ValueAxis axis = plot.getRangeAxis(); Range range = axis.getRange(); aymin = range.getLowerBound(); aymax = range.getUpperBound(); @@ -281,6 +287,8 @@ if (ymax != null) aymax = ymax; axis.setRange(aymin, aymax); } + // NumberAxis axis = (NumberAxis) plot.getRangeAxis(); + // axis.setTickUnit(new NumberTickUnit(1, new DecimalFormat("0"), 1)); } @@ -297,7 +305,7 @@ if (axis_y_type.equals("logarithmic")) { - NumberAxis rangeAxis = new LogarithmicAxis(ylabel); + ValueAxis rangeAxis = new LogAxis(ylabel); plot.setRangeAxis(rangeAxis); } else if (!axis_y_type.equals("normal")) @@ -436,19 +444,19 @@ return false; return true; } - - static BasicStroke dottedStroke = + + static BasicStroke dottedStroke = new BasicStroke(2.0f, BasicStroke.CAP_ROUND, BasicStroke.JOIN_ROUND, 1.0f, new float[] {6.0f, 6.0f}, 0.0f); - + static void formatLine(String name, XYLineAndShapeRenderer renderer, int i) { System.out.println(name); - String lineStyle = properties.getProperty("line."+name); + String lineStyle = properties.getProperty("line."+name); if ("dotted".equals(lineStyle)) renderer.setSeriesStroke(i, dottedStroke); } - + static String toString(double[][] array) { StringBuilder sb = new StringBuilder(); From wozniak at ci.uchicago.edu Tue Jan 14 12:48:29 2014 From: wozniak at ci.uchicago.edu (wozniak at ci.uchicago.edu) Date: Tue, 14 Jan 2014 12:48:29 -0600 (CST) Subject: [Swift-commit] r7474 - usertools/plotter/src/plotter Message-ID: <20140114184829.284D39CC96@svn.ci.uchicago.edu> Author: wozniak Date: 2014-01-14 12:48:29 -0600 (Tue, 14 Jan 2014) New Revision: 7474 Modified: usertools/plotter/src/plotter/Lines.java usertools/plotter/src/plotter/Plots.java usertools/plotter/src/plotter/Util.java Log: New feature for drawing rectangles Modified: usertools/plotter/src/plotter/Lines.java =================================================================== --- usertools/plotter/src/plotter/Lines.java 2014-01-14 17:33:03 UTC (rev 7473) +++ usertools/plotter/src/plotter/Lines.java 2014-01-14 18:48:29 UTC (rev 7474) @@ -1,10 +1,12 @@ package plotter; +import static plotter.Util.matches; import gnu.getopt.Getopt; import java.awt.BasicStroke; import java.awt.Color; +import java.awt.Graphics2D; import java.awt.geom.Rectangle2D; import java.io.*; import java.util.ArrayList; @@ -144,10 +146,12 @@ @param ylabel Y label text. @param output EPS filename. @return true/false depending if the method completed without error or not + * @throws UserInputException */ public static boolean plot(XYSeriesCollection collection, - String title, String xlabel, - String ylabel, String output) + String title, String xlabel, + String ylabel, String output) + throws UserInputException { EPSDocumentGraphics2D g2d = null; Rectangle2D.Double rectangle = null; @@ -182,6 +186,8 @@ chart.draw(g2d, rectangle); + drawGraphics(g2d); + try { g2d.finish(); @@ -457,6 +463,40 @@ renderer.setSeriesStroke(i, dottedStroke); } + static void drawGraphics(Graphics2D g2d) + throws UserInputException + { + String s = properties.getProperty("graphics"); + int count = Integer.parseInt(s); + for (int i = 0; i < count; i++) + { + String p = "graphic."+i; + String d = properties.getProperty(p); + if (d == null) + throw new UserInputException("no such property: " + p); + String[] tokens = d.split("\\s"); + if (tokens.length == 0) + throw new UserInputException("property too short: " + p); + String shape = tokens[0]; + if (matches(shape, "rectangle")) + drawRectangle(g2d, tokens); + else + throw new UserInputException("unknown shape: " + shape); + } + } + + static void drawRectangle(Graphics2D g2d, String[] tokens) + throws UserInputException + { + Color color = Plots.string2color(tokens[1]); + double x0 = Integer.parseInt(tokens[2]); + double y0 = Integer.parseInt(tokens[3]); + double x1 = Integer.parseInt(tokens[4]); + double y1 = Integer.parseInt(tokens[5]); + g2d.setColor(color); + g2d.fill(new Rectangle2D.Double(x0, y0, x1, y1)); + } + static String toString(double[][] array) { StringBuilder sb = new StringBuilder(); Modified: usertools/plotter/src/plotter/Plots.java =================================================================== --- usertools/plotter/src/plotter/Plots.java 2014-01-14 17:33:03 UTC (rev 7473) +++ usertools/plotter/src/plotter/Plots.java 2014-01-14 18:48:29 UTC (rev 7474) @@ -1,7 +1,7 @@ package plotter; +import java.awt.Color; import java.awt.Font; - import java.util.Properties; import org.jfree.chart.JFreeChart; @@ -32,4 +32,20 @@ result = new Font(name, Font.PLAIN, 12); return result; } + + static Color string2color(String s) + throws UserInputException + { + Color result = null; + + if (s.compareToIgnoreCase("black") == 0) + result = Color.BLACK; + if (s.compareToIgnoreCase("white") == 0) + result = Color.WHITE; + + if (result == null) + throw new UserInputException("unknown color: " + s); + + return result; + } } Modified: usertools/plotter/src/plotter/Util.java =================================================================== --- usertools/plotter/src/plotter/Util.java 2014-01-14 17:33:03 UTC (rev 7473) +++ usertools/plotter/src/plotter/Util.java 2014-01-14 18:48:29 UTC (rev 7474) @@ -72,6 +72,15 @@ return sb.toString(); } + public static boolean matches(String s1, String s2) + { + assert(s1 != null); + assert(s2 != null); + if (s1.compareToIgnoreCase(s2) == 0) + return true; + return false; + } + public static void fatal(String s) { System.err.println(s); From davidk at ci.uchicago.edu Wed Jan 15 23:24:31 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 15 Jan 2014 23:24:31 -0600 (CST) Subject: [Swift-commit] r7475 - trunk/bin Message-ID: <20140116052431.E7B869CCF9@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-15 23:24:31 -0600 (Wed, 15 Jan 2014) New Revision: 7475 Modified: trunk/bin/swiftrun Log: Allow more flexibility with providers Modified: trunk/bin/swiftrun =================================================================== --- trunk/bin/swiftrun 2014-01-14 18:48:29 UTC (rev 7474) +++ trunk/bin/swiftrun 2014-01-16 05:24:31 UTC (rev 7475) @@ -135,10 +135,12 @@ my $ccount = ($value =~ s/:/:/g); my $jobmanager = ""; my $jobmanagerURL = ""; + my $provider = ""; # With no separators, assume local if( $ccount == 0 ) { $jobmanager = "local:$value"; + return "\n"; } # With one separator, use ssh-cl and assume hostname:type @@ -146,6 +148,7 @@ (my $first, my $second) = split(':', $value); $jobmanager = "ssh-cl:$second"; $jobmanagerURL = "$first"; + return "\n"; } # Other, in the format of proto:host:jobMgr @@ -153,13 +156,16 @@ (my $first, my $second, my $third) = split(':', $value); $jobmanager="$first:$third"; $jobmanagerURL = "$second"; - } - - if ( defined($jobmanagerURL) && length($jobmanagerURL) > 0) { return "\n"; - } else { - return "\n"; } + + elsif ( $ccount == 3) { + (my $first, my $second, my $third, my $fourth) = split(':', $value); + $provider=$first; + $jobmanager="$second:$third"; + $jobmanagerURL="$fourth"; + return "\n"; + } } elsif ( $property eq "workdir" ) { return "$value\n"; } From davidk at ci.uchicago.edu Wed Jan 15 23:25:13 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 15 Jan 2014 23:25:13 -0600 (CST) Subject: [Swift-commit] r7476 - branches/release-0.95/bin Message-ID: <20140116052513.6AD659CCF9@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-15 23:25:13 -0600 (Wed, 15 Jan 2014) New Revision: 7476 Modified: branches/release-0.95/bin/swiftrun Log: Allow more flexibility with providers Modified: branches/release-0.95/bin/swiftrun =================================================================== --- branches/release-0.95/bin/swiftrun 2014-01-16 05:24:31 UTC (rev 7475) +++ branches/release-0.95/bin/swiftrun 2014-01-16 05:25:13 UTC (rev 7476) @@ -135,10 +135,12 @@ my $ccount = ($value =~ s/:/:/g); my $jobmanager = ""; my $jobmanagerURL = ""; + my $provider = ""; # With no separators, assume local if( $ccount == 0 ) { $jobmanager = "local:$value"; + return "\n"; } # With one separator, use ssh-cl and assume hostname:type @@ -146,6 +148,7 @@ (my $first, my $second) = split(':', $value); $jobmanager = "ssh-cl:$second"; $jobmanagerURL = "$first"; + return "\n"; } # Other, in the format of proto:host:jobMgr @@ -153,13 +156,16 @@ (my $first, my $second, my $third) = split(':', $value); $jobmanager="$first:$third"; $jobmanagerURL = "$second"; - } - - if ( defined($jobmanagerURL) && length($jobmanagerURL) > 0) { return "\n"; - } else { - return "\n"; } + + elsif ( $ccount == 3) { + (my $first, my $second, my $third, my $fourth) = split(':', $value); + $provider=$first; + $jobmanager="$second:$third"; + $jobmanagerURL="$fourth"; + return "\n"; + } } elsif ( $property eq "workdir" ) { return "$value\n"; } From davidk at ci.uchicago.edu Wed Jan 15 23:32:59 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 15 Jan 2014 23:32:59 -0600 (CST) Subject: [Swift-commit] r7477 - trunk/bin Message-ID: <20140116053259.ACBD09CCF9@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-15 23:32:59 -0600 (Wed, 15 Jan 2014) New Revision: 7477 Modified: trunk/bin/swiftrun Log: workermanager site property Modified: trunk/bin/swiftrun =================================================================== --- trunk/bin/swiftrun 2014-01-16 05:25:13 UTC (rev 7476) +++ trunk/bin/swiftrun 2014-01-16 05:32:59 UTC (rev 7477) @@ -55,6 +55,7 @@ 'workdir' => 'workdir', 'workerloglevel' => 'globus.workerlogginglevel', 'workerlogdirectory' => 'globus.workerloggingdirectory', + 'workermanager' => 'globus.workerManager', ); # Verify a property file exists and add it to the search path From davidk at ci.uchicago.edu Wed Jan 15 23:33:31 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 15 Jan 2014 23:33:31 -0600 (CST) Subject: [Swift-commit] r7478 - branches/release-0.95/bin Message-ID: <20140116053331.8F1A99CCF9@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-15 23:33:31 -0600 (Wed, 15 Jan 2014) New Revision: 7478 Modified: branches/release-0.95/bin/swiftrun Log: workermanager site property Modified: branches/release-0.95/bin/swiftrun =================================================================== --- branches/release-0.95/bin/swiftrun 2014-01-16 05:32:59 UTC (rev 7477) +++ branches/release-0.95/bin/swiftrun 2014-01-16 05:33:31 UTC (rev 7478) @@ -55,6 +55,7 @@ 'workdir' => 'workdir', 'workerloglevel' => 'globus.workerlogginglevel', 'workerlogdirectory' => 'globus.workerloggingdirectory', + 'workermanager' => 'globus.workerManager', ); # Verify a property file exists and add it to the search path From davidk at ci.uchicago.edu Wed Jan 15 23:56:37 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 15 Jan 2014 23:56:37 -0600 (CST) Subject: [Swift-commit] r7479 - branches/release-0.95/bin Message-ID: <20140116055637.0C9269CCF9@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-15 23:56:36 -0600 (Wed, 15 Jan 2014) New Revision: 7479 Modified: branches/release-0.95/bin/swiftrun Log: Modified: branches/release-0.95/bin/swiftrun =================================================================== --- branches/release-0.95/bin/swiftrun 2014-01-16 05:33:31 UTC (rev 7478) +++ branches/release-0.95/bin/swiftrun 2014-01-16 05:56:36 UTC (rev 7479) @@ -160,8 +160,8 @@ return "\n"; } - elsif ( $ccount == 3) { - (my $first, my $second, my $third, my $fourth) = split(':', $value); + elsif ( $ccount >= 3) { + (my $first, my $second, my $third, my $fourth) = split(':', $value, 4); $provider=$first; $jobmanager="$second:$third"; $jobmanagerURL="$fourth"; From davidk at ci.uchicago.edu Wed Jan 15 23:56:54 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 15 Jan 2014 23:56:54 -0600 (CST) Subject: [Swift-commit] r7480 - trunk/bin Message-ID: <20140116055654.7CA889CCF9@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-15 23:56:54 -0600 (Wed, 15 Jan 2014) New Revision: 7480 Modified: trunk/bin/swiftrun Log: Modified: trunk/bin/swiftrun =================================================================== --- trunk/bin/swiftrun 2014-01-16 05:56:36 UTC (rev 7479) +++ trunk/bin/swiftrun 2014-01-16 05:56:54 UTC (rev 7480) @@ -160,8 +160,8 @@ return "\n"; } - elsif ( $ccount == 3) { - (my $first, my $second, my $third, my $fourth) = split(':', $value); + elsif ( $ccount >= 3) { + (my $first, my $second, my $third, my $fourth) = split(':', $value, 4); $provider=$first; $jobmanager="$second:$third"; $jobmanagerURL="$fourth"; From hategan at ci.uchicago.edu Thu Jan 16 23:46:28 2014 From: hategan at ci.uchicago.edu (hategan at ci.uchicago.edu) Date: Thu, 16 Jan 2014 23:46:28 -0600 (CST) Subject: [Swift-commit] r7481 - trunk/src/org/griphyn/vdl/mapping/file Message-ID: <20140117054628.273469CCEC@svn.ci.uchicago.edu> Author: hategan Date: 2014-01-16 23:46:27 -0600 (Thu, 16 Jan 2014) New Revision: 7481 Modified: trunk/src/org/griphyn/vdl/mapping/file/StructuredRegularExpressionMapper.java Log: the structured regexp mapper doesn't (and shouldn't) extend the AbstractFileMapper (bug 1171) Modified: trunk/src/org/griphyn/vdl/mapping/file/StructuredRegularExpressionMapper.java =================================================================== --- trunk/src/org/griphyn/vdl/mapping/file/StructuredRegularExpressionMapper.java 2014-01-16 05:56:54 UTC (rev 7480) +++ trunk/src/org/griphyn/vdl/mapping/file/StructuredRegularExpressionMapper.java 2014-01-17 05:46:27 UTC (rev 7481) @@ -27,6 +27,7 @@ import org.apache.log4j.Logger; import org.griphyn.vdl.mapping.AbsFile; +import org.griphyn.vdl.mapping.AbstractMapper; import org.griphyn.vdl.mapping.DSHandle; import org.griphyn.vdl.mapping.HandleOpenException; import org.griphyn.vdl.mapping.InvalidPathException; @@ -34,7 +35,7 @@ import org.griphyn.vdl.mapping.Path; import org.griphyn.vdl.mapping.PhysicalFormat; -public class StructuredRegularExpressionMapper extends AbstractFileMapper { +public class StructuredRegularExpressionMapper extends AbstractMapper { public static final Logger logger = Logger.getLogger(StructuredRegularExpressionMapper.class); From hategan at ci.uchicago.edu Fri Jan 17 00:04:39 2014 From: hategan at ci.uchicago.edu (hategan at ci.uchicago.edu) Date: Fri, 17 Jan 2014 00:04:39 -0600 (CST) Subject: [Swift-commit] r7482 - trunk/src/org/griphyn/vdl/mapping Message-ID: <20140117060439.5BE559CCEC@svn.ci.uchicago.edu> Author: hategan Date: 2014-01-17 00:04:39 -0600 (Fri, 17 Jan 2014) New Revision: 7482 Modified: trunk/src/org/griphyn/vdl/mapping/AbstractDataNode.java trunk/src/org/griphyn/vdl/mapping/ArrayDataNode.java trunk/src/org/griphyn/vdl/mapping/MappingParamSet.java trunk/src/org/griphyn/vdl/mapping/RootArrayDataNode.java Log: while a fully settled issue, added a flag to addListener to specify that notifications should only be sent about full closes (instead of partial array updates); this has no effect on non-arrays, but it can avoid infinite recursion if a piece of code is repeatedly adding listeners to a list of open things (also bug 1171) Modified: trunk/src/org/griphyn/vdl/mapping/AbstractDataNode.java =================================================================== --- trunk/src/org/griphyn/vdl/mapping/AbstractDataNode.java 2014-01-17 05:46:27 UTC (rev 7481) +++ trunk/src/org/griphyn/vdl/mapping/AbstractDataNode.java 2014-01-17 06:04:39 UTC (rev 7482) @@ -717,6 +717,10 @@ } public void addListener(FutureListener l) { + addListener(l, true); + } + + public void addListener(FutureListener l, boolean partialUpdates) { boolean closed; WaitingThreadsMonitor.addThread(l, this); synchronized(this) { Modified: trunk/src/org/griphyn/vdl/mapping/ArrayDataNode.java =================================================================== --- trunk/src/org/griphyn/vdl/mapping/ArrayDataNode.java 2014-01-17 05:46:27 UTC (rev 7481) +++ trunk/src/org/griphyn/vdl/mapping/ArrayDataNode.java 2014-01-17 06:04:39 UTC (rev 7482) @@ -104,12 +104,12 @@ } @Override - public void addListener(FutureListener l) { + public void addListener(FutureListener l, boolean partialUpdates) { boolean shouldNotify; WaitingThreadsMonitor.addThread(l, this); synchronized(this) { shouldNotify = addListener0(l); - if (keyList != null) { + if (keyList != null && partialUpdates) { shouldNotify = true; } } Modified: trunk/src/org/griphyn/vdl/mapping/MappingParamSet.java =================================================================== --- trunk/src/org/griphyn/vdl/mapping/MappingParamSet.java 2014-01-17 05:46:27 UTC (rev 7481) +++ trunk/src/org/griphyn/vdl/mapping/MappingParamSet.java 2014-01-17 06:04:39 UTC (rev 7482) @@ -45,7 +45,7 @@ protected boolean checkOpen(Object v) { if (v instanceof AbstractDataNode && !((AbstractDataNode) v).isClosed()) { - return true; + return true; } else { return false; Modified: trunk/src/org/griphyn/vdl/mapping/RootArrayDataNode.java =================================================================== --- trunk/src/org/griphyn/vdl/mapping/RootArrayDataNode.java 2014-01-17 05:46:27 UTC (rev 7481) +++ trunk/src/org/griphyn/vdl/mapping/RootArrayDataNode.java 2014-01-17 06:04:39 UTC (rev 7482) @@ -112,7 +112,7 @@ waitingMapperParam = mapper.getFirstOpenParameter(); if (waitingMapperParam != null) { - waitingMapperParam.addListener(this); + waitingMapperParam.addListener(this, false); if (variableTracer.isEnabled()) { variableTracer.trace(getThread(), getLine(), getName() + " WAIT " + Tracer.getVarName(waitingMapperParam)); From swift at ci.uchicago.edu Fri Jan 17 16:25:03 2014 From: swift at ci.uchicago.edu (swift at ci.uchicago.edu) Date: Fri, 17 Jan 2014 16:25:03 -0600 (CST) Subject: [Swift-commit] cog r3856 Message-ID: <20140117222503.CE7028D000A6@bridled.ci.uchicago.edu> ------------------------------------------------------------------------ r3856 | jmwozniak | 2014-01-17 16:22:46 -0600 (Fri, 17 Jan 2014) | 2 lines Fine-grained logging in class Lock ------------------------------------------------------------------------ Index: modules/provider-coaster-c-client/src/Lock.cpp =================================================================== --- modules/provider-coaster-c-client/src/Lock.cpp (revision 3855) +++ modules/provider-coaster-c-client/src/Lock.cpp (working copy) @@ -5,20 +5,39 @@ * Author: mike */ +#include + #include "Lock.h" +static int unique = 0; + +#define DEBUG_LOCKS 1 +#if DEBUG_LOCKS == 1 +#define debug(format, args...) \ + { printf("LOCK: " format "\n", ## args); \ + fflush(stdout); \ + } +#else +#define debug(...) 0; +#endif + Lock::Lock() { + id = unique++; + debug("LOCK: %i NEW"); pthread_mutex_init(&l, NULL); } Lock::~Lock() { + debug("LOCK: %i DELETED"); } void Lock::lock() { + printf("LOCK: %i ACQUIRE", id); pthread_mutex_lock(&l); } void Lock::unlock() { + debug("LOCK: %i RELEASE", id); pthread_mutex_unlock(&l); } Index: modules/provider-coaster-c-client/src/Lock.h =================================================================== --- modules/provider-coaster-c-client/src/Lock.h (revision 3855) +++ modules/provider-coaster-c-client/src/Lock.h (working copy) @@ -11,6 +11,7 @@ #include class Lock { + int id; private: pthread_mutex_t l; public: From swift at ci.uchicago.edu Fri Jan 17 16:30:03 2014 From: swift at ci.uchicago.edu (swift at ci.uchicago.edu) Date: Fri, 17 Jan 2014 16:30:03 -0600 (CST) Subject: [Swift-commit] cog r3857 Message-ID: <20140117223003.7D81C8D000A6@bridled.ci.uchicago.edu> ------------------------------------------------------------------------ r3857 | jmwozniak | 2014-01-17 16:29:54 -0600 (Fri, 17 Jan 2014) | 2 lines Fix output id ------------------------------------------------------------------------ Index: modules/provider-coaster-c-client/src/Lock.cpp =================================================================== --- modules/provider-coaster-c-client/src/Lock.cpp (revision 3856) +++ modules/provider-coaster-c-client/src/Lock.cpp (working copy) @@ -14,7 +14,7 @@ #define DEBUG_LOCKS 1 #if DEBUG_LOCKS == 1 #define debug(format, args...) \ - { printf("LOCK: " format "\n", ## args); \ + { printf("LOCK: " format "\n", id, ## args); \ fflush(stdout); \ } #else @@ -22,8 +22,8 @@ #endif Lock::Lock() { - id = unique++; - debug("LOCK: %i NEW"); + id= unique++; + debug("LOCK: %i NEW"); pthread_mutex_init(&l, NULL); } @@ -32,12 +32,12 @@ } void Lock::lock() { - printf("LOCK: %i ACQUIRE", id); + debug("LOCK: %i ACQUIRE"); pthread_mutex_lock(&l); } void Lock::unlock() { - debug("LOCK: %i RELEASE", id); + debug("LOCK: %i RELEASE"); pthread_mutex_unlock(&l); } From swift at ci.uchicago.edu Fri Jan 17 16:40:03 2014 From: swift at ci.uchicago.edu (swift at ci.uchicago.edu) Date: Fri, 17 Jan 2014 16:40:03 -0600 (CST) Subject: [Swift-commit] cog r3858 Message-ID: <20140117224003.D449B8D000A6@bridled.ci.uchicago.edu> ------------------------------------------------------------------------ r3858 | jmwozniak | 2014-01-17 16:40:01 -0600 (Fri, 17 Jan 2014) | 2 lines Clean up ------------------------------------------------------------------------ Index: modules/provider-coaster-c-client/src/Lock.cpp =================================================================== --- modules/provider-coaster-c-client/src/Lock.cpp (revision 3857) +++ modules/provider-coaster-c-client/src/Lock.cpp (working copy) @@ -14,7 +14,7 @@ #define DEBUG_LOCKS 1 #if DEBUG_LOCKS == 1 #define debug(format, args...) \ - { printf("LOCK: " format "\n", id, ## args); \ + { printf("LOCK: %i " format "\n", id, ## args); \ fflush(stdout); \ } #else @@ -23,21 +23,21 @@ Lock::Lock() { id= unique++; - debug("LOCK: %i NEW"); + debug("NEW"); pthread_mutex_init(&l, NULL); } Lock::~Lock() { - debug("LOCK: %i DELETED"); + debug("DELETED"); } void Lock::lock() { - debug("LOCK: %i ACQUIRE"); + debug("ACQUIRE"); pthread_mutex_lock(&l); } void Lock::unlock() { - debug("LOCK: %i RELEASE"); + debug("RELEASE"); pthread_mutex_unlock(&l); } From davidk at ci.uchicago.edu Mon Jan 20 10:48:09 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Mon, 20 Jan 2014 10:48:09 -0600 (CST) Subject: [Swift-commit] r7483 - branches/release-0.95/src/org/griphyn/vdl/mapping Message-ID: <20140120164809.9AA39178884@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-20 10:48:08 -0600 (Mon, 20 Jan 2014) New Revision: 7483 Modified: branches/release-0.95/src/org/griphyn/vdl/mapping/AbstractDataNode.java branches/release-0.95/src/org/griphyn/vdl/mapping/ArrayDataNode.java branches/release-0.95/src/org/griphyn/vdl/mapping/MappingParamSet.java branches/release-0.95/src/org/griphyn/vdl/mapping/RootArrayDataNode.java Log: Bug #1171 fix from trunk Modified: branches/release-0.95/src/org/griphyn/vdl/mapping/AbstractDataNode.java =================================================================== --- branches/release-0.95/src/org/griphyn/vdl/mapping/AbstractDataNode.java 2014-01-17 06:04:39 UTC (rev 7482) +++ branches/release-0.95/src/org/griphyn/vdl/mapping/AbstractDataNode.java 2014-01-20 16:48:08 UTC (rev 7483) @@ -717,6 +717,10 @@ } public void addListener(FutureListener l) { + addListener(l, true); + } + + public void addListener(FutureListener l, boolean partialUpdates) { boolean closed; WaitingThreadsMonitor.addThread(l, this); synchronized(this) { Modified: branches/release-0.95/src/org/griphyn/vdl/mapping/ArrayDataNode.java =================================================================== --- branches/release-0.95/src/org/griphyn/vdl/mapping/ArrayDataNode.java 2014-01-17 06:04:39 UTC (rev 7482) +++ branches/release-0.95/src/org/griphyn/vdl/mapping/ArrayDataNode.java 2014-01-20 16:48:08 UTC (rev 7483) @@ -104,12 +104,12 @@ } @Override - public void addListener(FutureListener l) { + public void addListener(FutureListener l, boolean partialUpdates) { boolean shouldNotify; WaitingThreadsMonitor.addThread(l, this); synchronized(this) { shouldNotify = addListener0(l); - if (keyList != null) { + if (keyList != null && partialUpdates) { shouldNotify = true; } } Modified: branches/release-0.95/src/org/griphyn/vdl/mapping/MappingParamSet.java =================================================================== --- branches/release-0.95/src/org/griphyn/vdl/mapping/MappingParamSet.java 2014-01-17 06:04:39 UTC (rev 7482) +++ branches/release-0.95/src/org/griphyn/vdl/mapping/MappingParamSet.java 2014-01-20 16:48:08 UTC (rev 7483) @@ -45,7 +45,7 @@ protected boolean checkOpen(Object v) { if (v instanceof AbstractDataNode && !((AbstractDataNode) v).isClosed()) { - return true; + return true; } else { return false; Modified: branches/release-0.95/src/org/griphyn/vdl/mapping/RootArrayDataNode.java =================================================================== --- branches/release-0.95/src/org/griphyn/vdl/mapping/RootArrayDataNode.java 2014-01-17 06:04:39 UTC (rev 7482) +++ branches/release-0.95/src/org/griphyn/vdl/mapping/RootArrayDataNode.java 2014-01-20 16:48:08 UTC (rev 7483) @@ -112,7 +112,7 @@ waitingMapperParam = mapper.getFirstOpenParameter(); if (waitingMapperParam != null) { - waitingMapperParam.addListener(this); + waitingMapperParam.addListener(this, false); if (variableTracer.isEnabled()) { variableTracer.trace(getThread(), getLine(), getName() + " WAIT " + Tracer.getVarName(waitingMapperParam)); From davidk at ci.uchicago.edu Tue Jan 21 16:09:49 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Tue, 21 Jan 2014 16:09:49 -0600 (CST) Subject: [Swift-commit] r7484 - branches/release-0.95/bin Message-ID: <20140121220949.F27CD9CF9F@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-21 16:09:49 -0600 (Tue, 21 Jan 2014) New Revision: 7484 Modified: branches/release-0.95/bin/swiftrun Log: jobwalltime fix Allow undocumented providerattributes Modified: branches/release-0.95/bin/swiftrun =================================================================== --- branches/release-0.95/bin/swiftrun 2014-01-20 16:48:08 UTC (rev 7483) +++ branches/release-0.95/bin/swiftrun 2014-01-21 22:09:49 UTC (rev 7484) @@ -46,6 +46,7 @@ 'maxnodesperjob' => 'globus.maxNodes', 'maxsubmitrate' => 'karajan.maxSubmitRate', 'overallocationdecayfactor' => 'globus.overallocationDecayFactor', + 'providerattributes' => 'globus.providerAttributes', 'remotemonitorenabled' => 'globus.remoteMonitorEnabled', 'slurm' => 'globus.slurm', 'taskdir' => 'globus.scratch', @@ -121,7 +122,7 @@ if( $property eq "jobwalltime" ) { verify_in_hhmmss($key, $value); - $property = hhmmss_to_seconds($value); + $value = hhmmss_to_seconds($value); } elsif ( $property eq "taskthrottle" ) { @@ -172,7 +173,7 @@ elsif ( $property eq "workdir" ) { return "$value\n"; } elsif ( $property eq "taskdir" ) { return "$value\n"; } elsif ( $property eq "filesystem" ) { return "\n"; } - + my ( $xmlnamespace, $xmlproperty ) = split(/\./, $site_aliases{ $propertyStart }); if ( defined($xmlnamespace) && defined($xmlproperty)) { return "" . $value . "\n"; From davidk at ci.uchicago.edu Tue Jan 21 16:10:35 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Tue, 21 Jan 2014 16:10:35 -0600 (CST) Subject: [Swift-commit] r7485 - trunk/bin Message-ID: <20140121221035.7D4499CF9F@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-21 16:10:35 -0600 (Tue, 21 Jan 2014) New Revision: 7485 Modified: trunk/bin/swiftrun Log: jobwalltime fix and providerattributes Modified: trunk/bin/swiftrun =================================================================== --- trunk/bin/swiftrun 2014-01-21 22:09:49 UTC (rev 7484) +++ trunk/bin/swiftrun 2014-01-21 22:10:35 UTC (rev 7485) @@ -46,6 +46,7 @@ 'maxnodesperjob' => 'globus.maxNodes', 'maxsubmitrate' => 'karajan.maxSubmitRate', 'overallocationdecayfactor' => 'globus.overallocationDecayFactor', + 'providerattributes' => 'globus.providerAttributes', 'remotemonitorenabled' => 'globus.remoteMonitorEnabled', 'slurm' => 'globus.slurm', 'taskdir' => 'globus.scratch', @@ -121,7 +122,7 @@ if( $property eq "jobwalltime" ) { verify_in_hhmmss($key, $value); - $property = hhmmss_to_seconds($value); + $value = hhmmss_to_seconds($value); } elsif ( $property eq "taskthrottle" ) { @@ -172,7 +173,7 @@ elsif ( $property eq "workdir" ) { return "$value\n"; } elsif ( $property eq "taskdir" ) { return "$value\n"; } elsif ( $property eq "filesystem" ) { return "\n"; } - + my ( $xmlnamespace, $xmlproperty ) = split(/\./, $site_aliases{ $propertyStart }); if ( defined($xmlnamespace) && defined($xmlproperty)) { return "" . $value . "\n"; From davidk at ci.uchicago.edu Tue Jan 21 16:25:59 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Tue, 21 Jan 2014 16:25:59 -0600 (CST) Subject: [Swift-commit] r7486 - trunk/docs/userguide Message-ID: <20140121222559.8FBA69CFF3@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-21 16:25:59 -0600 (Tue, 21 Jan 2014) New Revision: 7486 Modified: trunk/docs/userguide/configuration Log: Added brief description of providerAttributes Modified: trunk/docs/userguide/configuration =================================================================== --- trunk/docs/userguide/configuration 2014-01-21 22:10:35 UTC (rev 7485) +++ trunk/docs/userguide/configuration 2014-01-21 22:25:59 UTC (rev 7486) @@ -206,6 +206,11 @@ The maximum number of nodes to request per scheduler job. |site.westmere.maxNodesPerJob=2 +|providerAttributes| +Allows user to pass attributes through directly to scheduler submit script. Currently +only implemented for sites that use PBS. +|site.beagle.providerAttributes=pbs.aprun;pbs.mpp;depth=24 + |taskDir| Tasks will be run from this directory. In the absence of a taskDir definition, Swift will run the task from workdir. From swift at ci.uchicago.edu Tue Jan 21 21:30:04 2014 From: swift at ci.uchicago.edu (swift at ci.uchicago.edu) Date: Tue, 21 Jan 2014 21:30:04 -0600 (CST) Subject: [Swift-commit] cog r3859 Message-ID: <20140122033004.74F788D000A6@bridled.ci.uchicago.edu> ------------------------------------------------------------------------ r3859 | hategan | 2014-01-21 21:29:04 -0600 (Tue, 21 Jan 2014) | 1 line release lock before calling pthread_join ------------------------------------------------------------------------ Index: modules/provider-coaster-c-client/src/CoasterLoop.cpp =================================================================== --- modules/provider-coaster-c-client/src/CoasterLoop.cpp (revision 3858) +++ modules/provider-coaster-c-client/src/CoasterLoop.cpp (working copy) @@ -50,14 +50,20 @@ started = true; } -void CoasterLoop::stop() { Lock::Scoped l(lock); - if (!started) { - return; +void CoasterLoop::stop() { + { Lock::Scoped l(lock); + if (!started) { + return; + } + LogInfo << "Stopping coaster loop" << endl; + done = true; + // make sure we are not stuck in select() + requestWrite(1); } - LogInfo << "Stopping coaster loop" << endl; - done = true; - // make sure we are not stuck in select() - requestWrite(1); + /* + * must release lock before calling pthread_join + * in case run() is waiting for the lock + */ pthread_join(thread, NULL); LogInfo << "Coaster loop stopped" << endl; } From davidk at ci.uchicago.edu Wed Jan 22 10:30:47 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 22 Jan 2014 10:30:47 -0600 (CST) Subject: [Swift-commit] r7487 - in trunk: . bin etc lib lib/perl Message-ID: <20140122163047.C56079CFBF@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-22 10:30:47 -0600 (Wed, 22 Jan 2014) New Revision: 7487 Added: trunk/etc/templates/ Removed: trunk/etc/apps/ trunk/etc/certificate/ trunk/etc/sites/ trunk/lib/listcoasterurls.jar trunk/lib/perl/SwiftConfig.pm trunk/lib/perl/XML/ Modified: trunk/bin/swift trunk/build.xml trunk/etc/swift.properties Log: Cleanup - remove some old files related to the old swiftrun/swiftconfig Add templates directory, and use by default unless SWIFT_SITE_CONF is defined Modified: trunk/bin/swift =================================================================== --- trunk/bin/swift 2014-01-21 22:25:59 UTC (rev 7486) +++ trunk/bin/swift 2014-01-22 16:30:47 UTC (rev 7487) @@ -40,6 +40,10 @@ fi fi +if [ -z "$SWIFT_SITE_CONF" ]; then + export SWIFT_SITE_CONF=$SWIFT_HOME/etc/templates +fi + OPTIONS="$OPTIONS -Djava.endorsed.dirs=$SWIFT_HOME/lib/endorsed" LOCALCLASSPATH=$SWIFT_HOME/etc$CPDELIM$SWIFT_HOME/libexec Modified: trunk/build.xml =================================================================== --- trunk/build.xml 2014-01-21 22:25:59 UTC (rev 7486) +++ trunk/build.xml 2014-01-22 16:30:47 UTC (rev 7487) @@ -81,7 +81,6 @@ - @@ -224,15 +223,9 @@ - - + + - - - - - - Modified: trunk/etc/swift.properties =================================================================== --- trunk/etc/swift.properties 2014-01-21 22:25:59 UTC (rev 7486) +++ trunk/etc/swift.properties 2014-01-22 16:30:47 UTC (rev 7487) @@ -386,12 +386,3 @@ # # Default: true # - -# Add a default definition for 'local' site -site.local { - jobManager=local - tasksPerWorker=1 - filesystem=local - workdir=$RUNDIRECTORY - taskThrottle=1 -} Deleted: trunk/lib/listcoasterurls.jar =================================================================== (Binary files differ) Deleted: trunk/lib/perl/SwiftConfig.pm =================================================================== --- trunk/lib/perl/SwiftConfig.pm 2014-01-21 22:25:59 UTC (rev 7486) +++ trunk/lib/perl/SwiftConfig.pm 2014-01-22 16:30:47 UTC (rev 7487) @@ -1,847 +0,0 @@ -package SwiftConfig; - -use strict; -use warnings; - -use File::Copy; -use File::Path; -use Pod::Usage; -use FindBin qw($Bin); -use lib "$FindBin::Bin/../lib/perl"; # Use libraries in $swift_home/lib/perl -use SwiftConfig; -use Getopt::Long; -use File::Which qw(which where); -use XML::Simple; - -require Exporter; -our @ISA = qw(Exporter); -our %EXPORT_TAGS = ( 'all' => [ qw() ] ); -our @EXPORT_OK = ( @{ $EXPORT_TAGS{'all'} } ); -our @EXPORT = qw(create_directory get_entry add_ssh remove_ssh -update_tc_hostname update_xml write_file print_directory strip_directory -copy_file cat_file add_application edit_application remove_application -list_applications initialize_swiftconfig update_site_applications import_tc -import_xml edit_profile add_to_group list_group remove_from_group -); -our $VERSION = '0.01'; - -# Prepare data -my $xml = new XML::Simple(); -my @execution_providers = - ( "gt4", "local", "pbs", "condor", "ssh", "coaster", ); - -# Create a new directory if it does not exist -sub create_directory { - my $directory = $_[0]; - if ( !-d "$directory" ) { - mkdir "$directory" - or die "Unable to create directory $directory\n"; - } -} - -# Process keyboard input -sub get_entry { - my ( $entry_description, $entry_value, $use_default, @allowable_values, ) = @_; - - # If use_default is specified, automatically plug in the default value - if($use_default) { - return $entry_value; - } - - if(!@allowable_values) { - print "$entry_description [$entry_value]: "; - } - else { - print "$entry_description ["; - my $counter=0; - foreach my $allowable(@allowable_values) { - if($counter != 0) { - print " "; - } - if($allowable eq $entry_value) { - print "*$allowable"; - } - else { - print "$allowable"; - } - $counter++; - } - print "]: "; - } - my $new_value = ; - chomp($new_value); - if ($new_value) { - $entry_value = $new_value; - } - - # Check if value entered is valid (if valid values were passed) - my $is_valid = 0; - if (@allowable_values) { - foreach my $allowable (@allowable_values) { - if ( $allowable eq $entry_value ) { - $is_valid = 1; - } - } - if ( !$is_valid ) { - my $error_message = q{}; - foreach my $allowable (@allowable_values) { - $error_message = $error_message . $allowable . ' '; - } - print 'Invalid value selected. Please select from: ' - . "$error_message\n\n"; - $entry_value = get_entry( $entry_description, $entry_value, 0, - @allowable_values, ); - } - } - return $entry_value; -} - -# Add new entry to auths.default -sub add_ssh { - my ( $ssh_site, $ssh_url) = @_; - - # Open authfile - my $auth_file = "$ENV{'HOME'}/.ssh/auth.defaults"; - if( -e "$auth_file") { - open( AUTH_FILE, "<$auth_file") - || die "Unable to open $auth_file for reading\n"; - } - else { - open( AUTH_FILE, "+>$auth_file" ) - || die "Unable to open $auth_file for read/write!\n"; - } - my @auth_data = ; - close(AUTH_FILE); - - # Get existing values and modify if found - my $ssh_username; - my $ssh_password; - my $found = 0; - foreach (@auth_data) { - if (/username/i && /^$ssh_url/i) { - ( my $setting, $ssh_username, ) = split( '=', $_ ); - chomp($ssh_username); - $ssh_username = get_entry( 'Username', $ssh_username, 0); - $_ = "$ssh_url.username=$ssh_username\n"; - $found = 1; - } - if (/\.password/i && /^$ssh_url/i) { - ( my $setting, $ssh_password, ) = split( '=', $_ ); - chomp($ssh_password); - $ssh_password = get_entry( 'Password', $ssh_password, 0); - $_ = "$ssh_url.password=$ssh_password\n"; - $found = 1; - } - } - - # Add new entry if needed - if(!$found) { - $ssh_username = getlogin(); - $ssh_username = get_entry( 'Username', $ssh_username, 0 ); - $ssh_password = get_entry( 'Password', '', 0); - - # Password based authentication - push( @auth_data, "$ssh_url.type=password\n" ); - push( @auth_data, "$ssh_url.username=$ssh_username\n" ); - push( @auth_data, "$ssh_url.password=$ssh_password\n" ); - } - - # Write data - write_file( $auth_file, @auth_data ); -} - -# Remove an entry from auth.defaults -sub remove_ssh { - my ( $ssh_url, ) = @_; - - # Open auth.defaults - my $auth_file = "$ENV{'HOME'}/.ssh/auth.defaults"; - if( -e "$auth_file") { - open( AUTH_FILE, "<$auth_file") - || die "Unable to open $auth_file for reading\n"; - } - else { - return; - } - my @auth_data = ; - close(AUTH_FILE); - - # Remove - foreach (@auth_data) { - if (/^$ssh_url/i) { - $_ = ''; - } - } - - # Write data - write_file( $auth_file, @auth_data ); -} - -# Update TC with correct hostname -sub update_tc_hostname { - my ( $tc_filename, $tc_host ) = @_; - - # Store TC data - open( TC_FILESTREAM, "$tc_filename" ) - or die("Unable to open tc file $tc_filename!"); - my @tc_data = ; - close(TC_FILESTREAM); - - foreach my $line (@tc_data) { - - # Ignore comments - my $first_character = substr( $line, 0, 1 ); - if ( $first_character eq '#' ) { - next; - } - - # Replace old entry with new entry - my ($line_tc_host, $line_tc_name, $line_tc_path, - $line_tc_status, $line_tc_platform, $line_tc_profile, - ) = split( /\s+/, $line ); - $line = - "$tc_host\t" - . "$line_tc_name\t" - . "$line_tc_path\t" - . "$line_tc_status\t" - . "$line_tc_platform\t" - . "$line_tc_profile\n"; - } - - write_file( $tc_filename, @tc_data ); -} - -# Update XML hash with values from command line -sub update_xml { - - # Set up data - my ($xml_filename, $edit_mode, $option_default) = @_; - # Values for edit mode - # 0 - Edit all - # 1 - All but name - # 2 - Customized.. to do - - if ( !-e $xml_filename ) { - die "Unable to update xml file $xml_filename\n"; - } - - my $xml_ref = $xml->XMLin( - $xml_filename, - ForceArray => [qw(workdirectory profile)], - KeyAttr => [], - ); - - # Handle - if($edit_mode == 0) { - $xml_ref->{handle} = get_entry( 'Site Entry Name', $xml_ref->{handle}, $option_default); - } - - # Execution - my $initial_exprovider = $xml_ref->{execution}{provider}; - $xml_ref->{execution}{provider} = get_entry( - 'Execution Provider', - $xml_ref->{execution}{provider}, - $option_default, - @execution_providers, - ); - my $current_exprovider = $xml_ref->{execution}{provider}; - - # Handle changes in execution provider - if( $initial_exprovider ne $current_exprovider ) { - # Add SSH fields - if( $current_exprovider eq 'ssh' ) { - if( !$xml_ref->{execution}{url} ) { - $xml_ref->{execution}{url} = 'unknown'; - } - } - # Add coaster fields - if( $current_exprovider eq 'coaster' ) { - if( !$xml_ref->{execution}{jobmanager} ) { - $xml_ref->{execution}{jobmanager} = 'unknown'; - } - if( !$xml_ref->{execution}{url} ){ - $xml_ref->{execution}{url} = 'unknown'; - } - } - } - - # Job manager - if ( $xml_ref->{execution}{jobmanager}) { - $xml_ref->{execution}{jobmanager} = - get_entry( 'Execution Job Manager', - $xml_ref->{execution}{jobmanager}, - $option_default - ); - } - - # Execution URL - if ( $xml_ref->{execution}{url} ) { - $xml_ref->{execution}{url} = - get_entry( 'Execution URL', - $xml_ref->{execution}{url}, - $option_default - ); - } - - # Grid FTP - if ( $xml_ref->{gridftp} ) { - $xml_ref->{gridftp}{url} = - get_entry( 'GridFTP URL', $xml_ref->{gridftp}{url}, $option_default); - } - - # Work directory - if ( $xml_ref->{workdirectory} ) { - $xml_ref->{workdirectory}[0] =~ s/\$HOME/$ENV{'HOME'}/; - $xml_ref->{workdirectory}[0] =~ s/\$USER/$ENV{'USER'}/; - $xml_ref->{workdirectory} = - [ get_entry( 'Work Directory', $xml_ref->{workdirectory}[0], $option_default) ]; - } - - # Job manager - if ( $xml_ref->{jobmanager} ) { - if ( $xml_ref->{jobmanager}{universe} ) { - $xml_ref->{jobmanager}{universe} = - get_entry( 'Job Universe', $xml_ref->{jobmanager}{universe}, $option_default); - } - if ( $xml_ref->{jobmanager}{url} ) { - $xml_ref->{jobmanager}{url} = - get_entry( 'Job Manager URL', $xml_ref->{jobmanager}{url}, $option_default); - } - if ( $xml_ref->{jobmanager}{major} ) { - $xml_ref->{jobmanager}{major} = - get_entry( 'Job Major Number', - $xml_ref->{jobmanager}{major}, $option_default); - } - if ( $xml_ref->{jobmanager}{minor} ) { - $xml_ref->{jobmanager}{minor} = - get_entry( 'Job Minor Number', - $xml_ref->{jobmanager}{minor}, $option_default); - } - } - - # Filesystem - if ( $xml_ref->{filesystem} ) { - if ( $xml_ref->{filesystem}{provider} ) { - $xml_ref->{filesystem}{provider} = get_entry( - 'Filesystem Provider', - $xml_ref->{filesystem}{provider}, - $option_default, - ); - } - if ( $xml_ref->{filesystem}{url} ) { - $xml_ref->{filesystem}{url} = - get_entry( 'Filesystem URL', $xml_ref->{filesystem}{url}, $option_default); - } - } - - # Profiles - foreach my $profile ( @{ $xml_ref->{profile} } ) { - $profile->{content} = - get_entry( $profile->{key}, $profile->{content}, $option_default); - } - return $xml_ref; -} - -# Write a file given variable and filename -sub write_file { - my ( $filename, @data ) = @_; - open( TEMPFILESTREAM, ">$filename" ) - or die("Unable to open $filename!\n"); - print TEMPFILESTREAM @data; - close(TEMPFILESTREAM); -} - -# Print all files in a directory -sub print_directory { - my ($directory) = @_; - chdir($directory) - || die "Unable to change directories to $directory\n"; - my @files = <*>; - foreach my $file (@files) { - ( my $basename, my $ext ) = split( /\./, $file ); - my @path = split( '/', $basename ); - print "$basename\n"; - } -} - -# Append one file to another -sub cat_file { - my ( $src, $dst ) = @_; - if ( -e $dst ) { - open( DSTFILE, ">>$dst" ) || die "Unable to open $dst for append\n"; - } - else { - open( DSTFILE, ">$dst" ) - or die "Unable to open $dst for writing\n"; - } - open( SRCFILE, $src ) || die "Unable to open $src for reading\n"; - foreach my $line () { - print DSTFILE $line; - } -} - -# Copy a file to a new location -sub copy_file { - my ( $src, $dst ) = @_; - if ( !-e $src ) { die "Unable to access $src\n"; } - if ( !-e $dst ) { die "Unable to access $dst\n"; } - copy( $src, $dst ) or die "Unable to copy $src to $dst\n"; -} - -# Strip directory name out of a string -sub strip_directory { - my ($fullpath) = @_; - my @path = split( '/', $fullpath ); - my $filename = $path[$#path]; - return $filename; -} - -# Add an application -sub add_application { - my ($app_filename) = @_; - open(APPFILE, "+<$app_filename") || die "Unable to open application file $app_filename for writing\n"; - - print "Enter name of new application: "; - my $app_name = ; - chomp($app_name); - foreach(){ - my ($site, $name, $path, $status, $platform, $profile) = split(/\s+/); - if($name eq $app_name) { - print "$name already exists\n"; - return; - } - } - my $app_path_guess = which("$app_name"); - if(!$app_path_guess) { - $app_path_guess = "/path/to/$app_name"; - } - my $app_path = get_entry("Path", $app_path_guess, 0); - my $app_time = get_entry("Walltime (hh:mm:ss)", "00:20:00", 0); - while($app_time !~ m/(\d+:\d+:\d+)/ ) { - print "Error: incorrect format\n"; - $app_time = get_entry("Walltime", $1, 0); - } - print APPFILE "SWIFTCONFIGURATION\t$app_name\t$app_path\tINSTALLED\tINTEL32::LINUX\tGLOBUS::maxwalltime=\"$app_time\"\n"; - close(APPFILE); - print "Added $app_name\n"; -} - -# Remove an application -sub remove_application { - my ($app_filename) = @_; - open(APPFILE, "$app_filename") || die "Unable to open application file $app_filename\n"; - my $app_to_remove = get_entry("Name of application to remove", '', 0); - my @app_data; - my $found=0; - foreach my $line (){ - my ($site, $name, $path, $status, $platform, $profile) = split(/\s+/, $line); - if($name eq $app_to_remove) { - $found=1; - } - else { - push(@app_data, $line); - } - } - close(APPFILE); - if(!$found) { - print "Unable to find application named $app_to_remove\n"; - return; - } - else { - write_file($app_filename, @app_data); - print "Removed $app_to_remove\n"; - } -} - -# List applications -sub list_applications { - my ($app_filename) = @_; - open(APPFILE, $app_filename) || die "Unable to open application file $app_filename\n"; - my @app_data = ; - close(APPFILE); - my ($site, $name, $path, $status, $platform, $profile); - my $counter=0; - my $header = sprintf("\n%-15s %-30s %-35s\n", 'Command Name', 'Path', 'Profile'); - $header .= sprintf("%-15s %-30s %-35s\n", '------------', '----', '-------'); - print $header; - foreach(@app_data) { - ($site, $name, $path, $status, $platform, $profile) = split(/\s+/); - if($name) { - my $nicely_formatted = sprintf("%-15s %-30s %-35s", $name, $path, $profile); - print "$nicely_formatted\n"; - } - } - -} - -# Edit application -sub edit_application { - my ($app_filename) = @_; - open(APPFILE, $app_filename) || die "Unable to open application file $app_filename\n"; - my @app_data = ; - close(APPFILE); - print "Application to edit: "; - my $app_to_edit = ; - chomp($app_to_edit); - - my $found=0; - foreach(@app_data) { - my ($site, $name, $path, $status, $platform, $profile) = split(/\s+/); - if( $name eq $app_to_edit) { - $found=1; - my $previous_name = $name; - # App name - $name = get_entry("New application name", $name, 0); - if($name ne $previous_name) { - $path = which("$name"); - } - # Path - if(!$path) { - $path = "/path/app"; - } - $path = get_entry("New path", $path, 0); - # Time - my $time = ''; - my $wallfound=0; - my $counter=0; - my @profiles = split(/;/, $profile); - foreach (@profiles) { - if( m/maxwalltime=\"(\d+:\d+:\d+)\"/ig ) { - $wallfound=1; - my $default_time = $1; - $time = get_entry("Walltime", $default_time, 0); - while($time !~ m/(\d+:\d+:\d+)/ ) { - print "Error: incorrect format\n"; - $time = get_entry("Walltime", $default_time, 0); - } - s/(\d+:\d+:\d+)/$time/g; - } - } - if( !$wallfound ) { - $time = get_entry("Time", "00:20:00", 0); - push(@profiles, "GLOBUS::maxwalltime=\"$time\""); - } - $profile = join(';', @profiles); - $_ = "$site\t$name\t$path\t$status\t$platform\t$profile\n"; - } - } - - if(!$found) { - print "Unable to find application named $app_to_edit\n"; - return; - } - else { - print "$app_to_edit updated\n"; - } - open(APPFILE, ">$app_filename") || die "Unable to open application file $app_filename for writing\n"; - print APPFILE @app_data; - close(APPFILE); -} - -# Initialize swiftconfig. Prepare things it needs for first run -sub initialize_swiftconfig { - create_directory("$ENV{'HOME'}/.swift"); - create_directory("$ENV{'HOME'}/.swift/sites"); - create_directory("$ENV{'HOME'}/.swift/groups"); - if(!-e "$ENV{'HOME'}/.swift/apps") { - create_directory("$ENV{'HOME'}/.swift/apps"); - my @app_files = glob("$FindBin::Bin/../etc/apps/*.apps"); - foreach my $app_file(@app_files) { - copy_file($app_file, "$ENV{'HOME'}/.swift/apps"); - } - } -} - -# Associate application sets with a configuration -sub update_site_applications { - my ($site, $use_defaults) = @_; - my $apps = ''; - - if(! -d "$ENV{'HOME'}/.swift/sites/$site") { - print "Unable to find configuration for $site\n"; - return; - } - - if(-e "$ENV{'HOME'}/.swift/sites/$site/apps") { - open(APPLIST, "$ENV{'HOME'}/.swift/sites/$site/apps") - || die "Unable to open app list $ENV{'HOME'}/.swift/sites/$site/apps"; - my @apps_file_data = ; - close(APPLIST); - foreach my $current_app (@apps_file_data) { - chomp($current_app); - if($apps) { - $apps = "$apps $current_app"; - } - else { - $apps = "$current_app"; - } - } - } - - if(!$use_defaults) { - my @all_available_appsets = glob("$ENV{'HOME'}/.swift/apps/*.apps"); - print "Available application sets: "; - foreach(@all_available_appsets) { - $_ = strip_directory($_); - ($_, my $junk) = split('\.'); - print "$_ "; - } - print "\n"; - } - - if(!$apps) { - $apps = "linux"; - } - - $apps = get_entry("Select application sets for $site", $apps, $use_defaults); - my @all_list = split(/ /, $apps); - open(APPFILE, ">$ENV{'HOME'}/.swift/sites/$site/apps") - || die "Unable to open $ENV{'HOME'}/.swift/sites/$site/apps for writing!\n"; - - foreach(@all_list) { - print APPFILE "$_\n"; - } - close(APPFILE); - - if(!$use_defaults) { - print "Successfully saved application sets for $site\n\n"; - } -} - -# Import existing XML file into swiftconfig style format -sub import_xml { - my ($xml_filename) = @_; - if(! -e $xml_filename) { - die "Unable to find file to import: $xml_filename\n"; - } - - my $xml_ref = $xml->XMLin( - $xml_filename, - ForceArray => [qw(workdirectory profile pool)], - KeyAttr => "pool", - ); - - foreach my $pool ( @{$xml_ref->{pool}} ) { - if(-d "$ENV{'HOME'}/.swift/sites/$pool->{handle}") { - print "Configuration for $pool->{handle} already exists. Skipping\n"; - } - else { - create_directory("$ENV{'HOME'}/.swift/sites/$pool->{handle}"); - my $xml_out_ref = $xml->XMLout( - $pool, - RootName => 'pool', - SuppressEmpty => 1, - ); - write_file("$ENV{'HOME'}/.swift/sites/$pool->{handle}/sites.xml", - $xml_out_ref ); - update_site_applications($pool->{handle}); - } - } -} - -# Import tc.data files into swiftconfig application set -sub import_tc { - my ($tc_filename) = @_; - if(! -e $tc_filename) { - die "Unable to find file to import: $tc_filename\n"; - } - open(TCFILE, $tc_filename) || die "Unable to open $tc_filename for reading\n"; - my @tc_data = ; - close(TCFILE); - foreach(@tc_data) { - my ($site, $name, $path, $status, $platform, $profile) = split(/\s+/); - $site = "SWIFTCONFIGURATION"; - if(!$name) { - $_ = ''; - next; - } - my $first_character = substr( $_, 0, 1 ); - if ( $first_character eq '#' ) { - $_ = ''; - next; - } - $_ = "$site\t$name\t$path\t$status\t$platform\t$profile\n"; - } - print "Enter name to call this application set: "; - my $set_name = ; - chomp($set_name); - - if(-e "$ENV{'HOME'}/.swift/apps/$set_name.apps") { - print "Set named $set_name already exists\n"; - my $yesno = get_entry("Overwrite $set_name?", "No", 0, ("yes", "no")); - if($yesno eq "no") { - return; - } - } - - write_file("$ENV{'HOME'}/.swift/apps/$set_name.apps", @tc_data); - print "Successfully imported application set named $set_name\n"; -} - -sub edit_profile { - my ($xml_filename, @profiles_to_edit) = @_; - if(! -e $xml_filename) { - print "Unable to edit profile on $xml_filename\n"; - return; - } - - my $xml_ref = $xml->XMLin( - $xml_filename, - ForceArray => [qw(workdirectory profile)], - KeyAttr => [], - ); - - - foreach my $profile ( @{ $xml_ref->{profile} } ) { - foreach my $profile_to_edit(@profiles_to_edit) { - if(lc($profile->{key}) eq lc($profile_to_edit)) { - $profile->{content} = - get_entry( $profile->{key}, $profile->{content}, 0); - } - } - } - - return $xml_ref; -} - -sub add_to_group { - my ($group_filename) = @_; - if(!-e $group_filename) { - print "Unable to find file $group_filename for editing\n"; - return; - } - open(GROUPFILE, ">>$group_filename") || die "Error opening $group_filename\n"; - my @all_sites = glob("$ENV{'HOME'}/.swift/sites/*"); - foreach(@all_sites) { - $_ = strip_directory($_); - } - my $new_site = get_entry("Enter name of site to add", '', 0, @all_sites); - - print GROUPFILE "$new_site\n"; - close(GROUPFILE); -} - -sub list_group { - my ($group_filename) = @_; - if(!-e $group_filename) { - print "Unable to find $group_filename for editing\n"; - return; - } - system("cat $group_filename"); -} - -sub remove_from_group { - my ($group_filename) = @_; - if(!-e $group_filename) { - print "Unable to find $group_filename for editing\n"; - return; - } - - open(GROUPFILE, $group_filename) || die "Error opening $group_filename\n"; - my @group_data = ; - close(GROUPFILE); - - my $remove_group = get_entry("Enter name of site to remove", '', 0); - $remove_group .= "\n"; - - my $found=0; - foreach(@group_data) { - if($_ eq $remove_group) - { - $found=1; - $_ = ''; - } - } - if(!$found) { - print "Unable to find site $remove_group. Use 'l' to get a list\n"; - } - write_file($group_filename, @group_data); -} -1; -__END__ - -=head1 SwiftConfig - -SwiftConfig - Perl module for swiftconfig and swiftrun applications - -=head1 SYNOPSIS - - use SwiftConfig; - -=head1 DESCRIPTION - -The SwiftConfig module provides a set of standard routines needed to handle -Swift Configuration. - -create_directory(directory_name) - Creates a directory, handles errors - -get_entry($entry_description, $entry_value, $use_default, @allowable_values) - get_entry is used to get input from the user - $entry_description is used to describe the data to the user - $entry_value is the default value. If the user hits enter, it will be used - $use_default, if true, will set input to $entry_value without prompting - @allowable_values is a list of all available options for that input - -add_ssh($ssh_site, $ssh_url) - Add an entry to ~/.ssh/auth.defaults - $ssh_site is the swift configuration name - $ssh_url is the network name/address to connect to - -remove_ssh($ssh_url) - Remove an entry from ~/.ssh/auth.defaults - $ssh_url is the network name/address to remove - -update_tc_hostname($filename, $tc_hostname) - Change the site name in a tc.data file - $filename is the filename of the tc.data - $tc_hostname is the value of the new hostname - -update_xml($xml_filename, $edit_mode, $option_default) - Edit and update a sites.xml file - $xml_filename filename to edit - There are currently two edit modes: 0=edit everything, 1=everything but name - $option_default, if true, will automatically use defaults - -write_file($filename, @data) - Write to $filename with @data. Handle errors - -print_directory($directory) - List all files within a directory without paths - -cat_file($src, $dst) - Concatenate $src to $dst, handle errors - -copy_file($src, $dst) - Copy file $src to $dst, handle errors - -strip_directory($fullpath) - Given a string like "/foo/blah/file.txt", return "file.txt" - -add_application($filename) - Add an application to an application set - -remove_application($filename) - Remove an application from an application set - -list_applications($filename) - List all applications contained in $filename - -edit_application($filename) - Edit an application in $filename - -initialize_swiftconfig() - Set up swiftconig directory structure and copy required files - -update_site_applications($site, $use_defaults) - Associate application sets with a configuration - $site is the name of the configuration - If $use_defaults > 0, it will save without prompting - -import_xml($filename) - Import existing site configuration(s) from $filename - -import_tc($filename) - Import an application set from an existing tc.data file - -=cut From davidk at ci.uchicago.edu Wed Jan 22 10:53:54 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 22 Jan 2014 10:53:54 -0600 (CST) Subject: [Swift-commit] r7488 - in trunk: bin etc/templates Message-ID: <20140122165354.AAB7E9CFBF@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-22 10:53:54 -0600 (Wed, 22 Jan 2014) New Revision: 7488 Added: trunk/etc/templates/swift.properties Modified: trunk/bin/swiftrun Log: Fix site matching issue in swiftrun Newly formatted templates for midway and beagle Modified: trunk/bin/swiftrun =================================================================== --- trunk/bin/swiftrun 2014-01-22 16:30:47 UTC (rev 7487) +++ trunk/bin/swiftrun 2014-01-22 16:53:54 UTC (rev 7488) @@ -72,7 +72,7 @@ my $site = $_[0]; my $pool = "\n\n"; while( my( $key, $value ) = each( %properties ) ) { - if( $key =~ /^\s*site.$site/ ) { + if( $key =~ /^\s*site.$site\./ ) { my $propxml = &property_to_xml( $key, $value ); if(defined($propxml)) { $pool .= $propxml; @@ -233,7 +233,7 @@ my $site = $_[0]; my $isDefined=0; while( my( $key, $value ) = each( %properties ) ) { - if( $key =~ m/^site\.$site/i ) { + if( $key =~ m/^site\.$site\./i ) { $isDefined=1; } } @@ -245,7 +245,7 @@ my $site = $_[0]; my $isDefined=0; while( my( $key, $value ) = each( %properties ) ) { - if( $key =~ m/^service\.$site/i ) { + if( $key =~ m/^service\.$site\./i ) { $isDefined=1; } } Added: trunk/etc/templates/swift.properties =================================================================== --- trunk/etc/templates/swift.properties (rev 0) +++ trunk/etc/templates/swift.properties 2014-01-22 16:53:54 UTC (rev 7488) @@ -0,0 +1,94 @@ +# +# Local sites +# +site.local { + jobManager=local + tasksPerWorker=4 + filesystem=local + workdir=$RUNDIRECTORY + taskThrottle=4 +} + +# +# Beagle sites +# +site.beagle-development { + jobManager=pbs + tasksPerWorker=24 + providerAttributes=pbs.aprun;pbs.mpp;depth=24 + jobWalltime=00:30:00 + maxJobs=3 + jobGranularity=1 + taskThrottle=72 + initialScore=10000 + filesystem=local + workDir=/lustre/beagle/$USER/swiftwork + jobQueue=development +} + +site.beagle { + jobManager=pbs + tasksPerWorker=24 + providerAttributes=pbs.aprun;pbs.mpp;depth=24 + initialScore=10000 + filesystem=local + workDir=/lustre/beagle/$USER/swiftwork + jobQueue=batch +} + +# +# Midway sites +# +site.midway-amd { + jobManager=slurm + tasksPerWorker=64 + jobQueue=amd + initialScore=10000 + filesystem=local + workdir=/scratch/midway/$USER/swiftwork +} + +site.midway-bigmem { + jobManager=slurm + tasksPerWorker=16 + jobQueue=bigmem + initialScore=10000 + filesystem=local + workdir=/scratch/midway/$USER/work +} + +site.midway-gpu { + jobManager=slurm + tasksPerWorker=16 + jobQueue=gpu + initialScore=10000 + filesystem=local + workdir=/scratch/midway/$USER/work +} + +site.midway { + jobManager=slurm + tasksPerWorker=16 + jobQueue=sandyb + initialScore=10000 + filesystem=local + workdir=/scratch/midway/$USER/work +} + +site.midway-sandyb { + jobManager=slurm + tasksPerWorker=16 + jobQueue=sandyb + initialScore=10000 + filesystem=local + workdir=/scratch/midway/$USER/work +} + +site.midway-westmere { + jobManager=slurm + tasksPerWorker=12 + jobQueue=westmere + initialScore=10000 + filesystem=local + workdir=/scratch/midway/$USER/work +} From davidk at ci.uchicago.edu Wed Jan 22 11:01:02 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 22 Jan 2014 11:01:02 -0600 (CST) Subject: [Swift-commit] r7489 - in branches/release-0.95: . bin etc etc/templates lib lib/perl Message-ID: <20140122170102.ACF339CFBF@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-22 11:01:02 -0600 (Wed, 22 Jan 2014) New Revision: 7489 Added: branches/release-0.95/etc/templates/ branches/release-0.95/etc/templates/swift.properties Removed: branches/release-0.95/etc/apps/ branches/release-0.95/etc/certificate/ branches/release-0.95/lib/listcoasterurls.jar branches/release-0.95/lib/perl/SwiftConfig.pm branches/release-0.95/lib/perl/XML/ Modified: branches/release-0.95/bin/swift branches/release-0.95/bin/swiftrun branches/release-0.95/build.xml branches/release-0.95/etc/swift.properties Log: Config updates and cleanup from trunk Modified: branches/release-0.95/bin/swift =================================================================== --- branches/release-0.95/bin/swift 2014-01-22 16:53:54 UTC (rev 7488) +++ branches/release-0.95/bin/swift 2014-01-22 17:01:02 UTC (rev 7489) @@ -29,7 +29,7 @@ ####### MAIN BODY ########## if [ ! -d "$SWIFT_HOME" ] ; then - SWIFT_HOME=`dirname $0`"/.." + SWIFT_HOME=$(cd $(dirname $0)/..; pwd) if [ ! -f "$SWIFT_HOME/lib/cog-swift-svn.jar" ] && [ ! -f "$SWIFT_HOME/lib/cog.jar" ] ; then MY_PATH=`which $0` SWIFT_HOME=`dirname $MY_PATH`"/.." @@ -40,6 +40,10 @@ fi fi +if [ -z "$SWIFT_SITE_CONF" ]; then + export SWIFT_SITE_CONF=$SWIFT_HOME/etc/templates +fi + OPTIONS="$OPTIONS -Djava.endorsed.dirs=$SWIFT_HOME/lib/endorsed" LOCALCLASSPATH=$SWIFT_HOME/etc$CPDELIM$SWIFT_HOME/libexec Modified: branches/release-0.95/bin/swiftrun =================================================================== --- branches/release-0.95/bin/swiftrun 2014-01-22 16:53:54 UTC (rev 7488) +++ branches/release-0.95/bin/swiftrun 2014-01-22 17:01:02 UTC (rev 7489) @@ -72,7 +72,7 @@ my $site = $_[0]; my $pool = "\n\n"; while( my( $key, $value ) = each( %properties ) ) { - if( $key =~ /^\s*site.$site/ ) { + if( $key =~ /^\s*site.$site\./ ) { my $propxml = &property_to_xml( $key, $value ); if(defined($propxml)) { $pool .= $propxml; @@ -233,7 +233,7 @@ my $site = $_[0]; my $isDefined=0; while( my( $key, $value ) = each( %properties ) ) { - if( $key =~ m/^site\.$site/i ) { + if( $key =~ m/^site\.$site\./i ) { $isDefined=1; } } @@ -245,7 +245,7 @@ my $site = $_[0]; my $isDefined=0; while( my( $key, $value ) = each( %properties ) ) { - if( $key =~ m/^service\.$site/i ) { + if( $key =~ m/^service\.$site\./i ) { $isDefined=1; } } Modified: branches/release-0.95/build.xml =================================================================== --- branches/release-0.95/build.xml 2014-01-22 16:53:54 UTC (rev 7488) +++ branches/release-0.95/build.xml 2014-01-22 17:01:02 UTC (rev 7489) @@ -81,7 +81,6 @@ - @@ -224,15 +223,9 @@ - - + + - - - - - - Modified: branches/release-0.95/etc/swift.properties =================================================================== --- branches/release-0.95/etc/swift.properties 2014-01-22 16:53:54 UTC (rev 7488) +++ branches/release-0.95/etc/swift.properties 2014-01-22 17:01:02 UTC (rev 7489) @@ -386,12 +386,3 @@ # # Default: true # - -# Add a default definition for 'local' site -site.local { - jobManager=local - tasksPerWorker=1 - filesystem=local - workdir=$RUNDIRECTORY - taskThrottle=1 -} Added: branches/release-0.95/etc/templates/swift.properties =================================================================== --- branches/release-0.95/etc/templates/swift.properties (rev 0) +++ branches/release-0.95/etc/templates/swift.properties 2014-01-22 17:01:02 UTC (rev 7489) @@ -0,0 +1,94 @@ +# +# Local sites +# +site.local { + jobManager=local + tasksPerWorker=4 + filesystem=local + workdir=$RUNDIRECTORY + taskThrottle=4 +} + +# +# Beagle sites +# +site.beagle-development { + jobManager=pbs + tasksPerWorker=24 + providerAttributes=pbs.aprun;pbs.mpp;depth=24 + jobWalltime=00:30:00 + maxJobs=3 + jobGranularity=1 + taskThrottle=72 + initialScore=10000 + filesystem=local + workDir=/lustre/beagle/$USER/swiftwork + jobQueue=development +} + +site.beagle { + jobManager=pbs + tasksPerWorker=24 + providerAttributes=pbs.aprun;pbs.mpp;depth=24 + initialScore=10000 + filesystem=local + workDir=/lustre/beagle/$USER/swiftwork + jobQueue=batch +} + +# +# Midway sites +# +site.midway-amd { + jobManager=slurm + tasksPerWorker=64 + jobQueue=amd + initialScore=10000 + filesystem=local + workdir=/scratch/midway/$USER/swiftwork +} + +site.midway-bigmem { + jobManager=slurm + tasksPerWorker=16 + jobQueue=bigmem + initialScore=10000 + filesystem=local + workdir=/scratch/midway/$USER/work +} + +site.midway-gpu { + jobManager=slurm + tasksPerWorker=16 + jobQueue=gpu + initialScore=10000 + filesystem=local + workdir=/scratch/midway/$USER/work +} + +site.midway { + jobManager=slurm + tasksPerWorker=16 + jobQueue=sandyb + initialScore=10000 + filesystem=local + workdir=/scratch/midway/$USER/work +} + +site.midway-sandyb { + jobManager=slurm + tasksPerWorker=16 + jobQueue=sandyb + initialScore=10000 + filesystem=local + workdir=/scratch/midway/$USER/work +} + +site.midway-westmere { + jobManager=slurm + tasksPerWorker=12 + jobQueue=westmere + initialScore=10000 + filesystem=local + workdir=/scratch/midway/$USER/work +} Deleted: branches/release-0.95/lib/listcoasterurls.jar =================================================================== (Binary files differ) Deleted: branches/release-0.95/lib/perl/SwiftConfig.pm =================================================================== --- branches/release-0.95/lib/perl/SwiftConfig.pm 2014-01-22 16:53:54 UTC (rev 7488) +++ branches/release-0.95/lib/perl/SwiftConfig.pm 2014-01-22 17:01:02 UTC (rev 7489) @@ -1,847 +0,0 @@ -package SwiftConfig; - -use strict; -use warnings; - -use File::Copy; -use File::Path; -use Pod::Usage; -use FindBin qw($Bin); -use lib "$FindBin::Bin/../lib/perl"; # Use libraries in $swift_home/lib/perl -use SwiftConfig; -use Getopt::Long; -use File::Which qw(which where); -use XML::Simple; - -require Exporter; -our @ISA = qw(Exporter); -our %EXPORT_TAGS = ( 'all' => [ qw() ] ); -our @EXPORT_OK = ( @{ $EXPORT_TAGS{'all'} } ); -our @EXPORT = qw(create_directory get_entry add_ssh remove_ssh -update_tc_hostname update_xml write_file print_directory strip_directory -copy_file cat_file add_application edit_application remove_application -list_applications initialize_swiftconfig update_site_applications import_tc -import_xml edit_profile add_to_group list_group remove_from_group -); -our $VERSION = '0.01'; - -# Prepare data -my $xml = new XML::Simple(); -my @execution_providers = - ( "gt4", "local", "pbs", "condor", "ssh", "coaster", ); - -# Create a new directory if it does not exist -sub create_directory { - my $directory = $_[0]; - if ( !-d "$directory" ) { - mkdir "$directory" - or die "Unable to create directory $directory\n"; - } -} - -# Process keyboard input -sub get_entry { - my ( $entry_description, $entry_value, $use_default, @allowable_values, ) = @_; - - # If use_default is specified, automatically plug in the default value - if($use_default) { - return $entry_value; - } - - if(!@allowable_values) { - print "$entry_description [$entry_value]: "; - } - else { - print "$entry_description ["; - my $counter=0; - foreach my $allowable(@allowable_values) { - if($counter != 0) { - print " "; - } - if($allowable eq $entry_value) { - print "*$allowable"; - } - else { - print "$allowable"; - } - $counter++; - } - print "]: "; - } - my $new_value = ; - chomp($new_value); - if ($new_value) { - $entry_value = $new_value; - } - - # Check if value entered is valid (if valid values were passed) - my $is_valid = 0; - if (@allowable_values) { - foreach my $allowable (@allowable_values) { - if ( $allowable eq $entry_value ) { - $is_valid = 1; - } - } - if ( !$is_valid ) { - my $error_message = q{}; - foreach my $allowable (@allowable_values) { - $error_message = $error_message . $allowable . ' '; - } - print 'Invalid value selected. Please select from: ' - . "$error_message\n\n"; - $entry_value = get_entry( $entry_description, $entry_value, 0, - @allowable_values, ); - } - } - return $entry_value; -} - -# Add new entry to auths.default -sub add_ssh { - my ( $ssh_site, $ssh_url) = @_; - - # Open authfile - my $auth_file = "$ENV{'HOME'}/.ssh/auth.defaults"; - if( -e "$auth_file") { - open( AUTH_FILE, "<$auth_file") - || die "Unable to open $auth_file for reading\n"; - } - else { - open( AUTH_FILE, "+>$auth_file" ) - || die "Unable to open $auth_file for read/write!\n"; - } - my @auth_data = ; - close(AUTH_FILE); - - # Get existing values and modify if found - my $ssh_username; - my $ssh_password; - my $found = 0; - foreach (@auth_data) { - if (/username/i && /^$ssh_url/i) { - ( my $setting, $ssh_username, ) = split( '=', $_ ); - chomp($ssh_username); - $ssh_username = get_entry( 'Username', $ssh_username, 0); - $_ = "$ssh_url.username=$ssh_username\n"; - $found = 1; - } - if (/\.password/i && /^$ssh_url/i) { - ( my $setting, $ssh_password, ) = split( '=', $_ ); - chomp($ssh_password); - $ssh_password = get_entry( 'Password', $ssh_password, 0); - $_ = "$ssh_url.password=$ssh_password\n"; - $found = 1; - } - } - - # Add new entry if needed - if(!$found) { - $ssh_username = getlogin(); - $ssh_username = get_entry( 'Username', $ssh_username, 0 ); - $ssh_password = get_entry( 'Password', '', 0); - - # Password based authentication - push( @auth_data, "$ssh_url.type=password\n" ); - push( @auth_data, "$ssh_url.username=$ssh_username\n" ); - push( @auth_data, "$ssh_url.password=$ssh_password\n" ); - } - - # Write data - write_file( $auth_file, @auth_data ); -} - -# Remove an entry from auth.defaults -sub remove_ssh { - my ( $ssh_url, ) = @_; - - # Open auth.defaults - my $auth_file = "$ENV{'HOME'}/.ssh/auth.defaults"; - if( -e "$auth_file") { - open( AUTH_FILE, "<$auth_file") - || die "Unable to open $auth_file for reading\n"; - } - else { - return; - } - my @auth_data = ; - close(AUTH_FILE); - - # Remove - foreach (@auth_data) { - if (/^$ssh_url/i) { - $_ = ''; - } - } - - # Write data - write_file( $auth_file, @auth_data ); -} - -# Update TC with correct hostname -sub update_tc_hostname { - my ( $tc_filename, $tc_host ) = @_; - - # Store TC data - open( TC_FILESTREAM, "$tc_filename" ) - or die("Unable to open tc file $tc_filename!"); - my @tc_data = ; - close(TC_FILESTREAM); - - foreach my $line (@tc_data) { - - # Ignore comments - my $first_character = substr( $line, 0, 1 ); - if ( $first_character eq '#' ) { - next; - } - - # Replace old entry with new entry - my ($line_tc_host, $line_tc_name, $line_tc_path, - $line_tc_status, $line_tc_platform, $line_tc_profile, - ) = split( /\s+/, $line ); - $line = - "$tc_host\t" - . "$line_tc_name\t" - . "$line_tc_path\t" - . "$line_tc_status\t" - . "$line_tc_platform\t" - . "$line_tc_profile\n"; - } - - write_file( $tc_filename, @tc_data ); -} - -# Update XML hash with values from command line -sub update_xml { - - # Set up data - my ($xml_filename, $edit_mode, $option_default) = @_; - # Values for edit mode - # 0 - Edit all - # 1 - All but name - # 2 - Customized.. to do - - if ( !-e $xml_filename ) { - die "Unable to update xml file $xml_filename\n"; - } - - my $xml_ref = $xml->XMLin( - $xml_filename, - ForceArray => [qw(workdirectory profile)], - KeyAttr => [], - ); - - # Handle - if($edit_mode == 0) { - $xml_ref->{handle} = get_entry( 'Site Entry Name', $xml_ref->{handle}, $option_default); - } - - # Execution - my $initial_exprovider = $xml_ref->{execution}{provider}; - $xml_ref->{execution}{provider} = get_entry( - 'Execution Provider', - $xml_ref->{execution}{provider}, - $option_default, - @execution_providers, - ); - my $current_exprovider = $xml_ref->{execution}{provider}; - - # Handle changes in execution provider - if( $initial_exprovider ne $current_exprovider ) { - # Add SSH fields - if( $current_exprovider eq 'ssh' ) { - if( !$xml_ref->{execution}{url} ) { - $xml_ref->{execution}{url} = 'unknown'; - } - } - # Add coaster fields - if( $current_exprovider eq 'coaster' ) { - if( !$xml_ref->{execution}{jobmanager} ) { - $xml_ref->{execution}{jobmanager} = 'unknown'; - } - if( !$xml_ref->{execution}{url} ){ - $xml_ref->{execution}{url} = 'unknown'; - } - } - } - - # Job manager - if ( $xml_ref->{execution}{jobmanager}) { - $xml_ref->{execution}{jobmanager} = - get_entry( 'Execution Job Manager', - $xml_ref->{execution}{jobmanager}, - $option_default - ); - } - - # Execution URL - if ( $xml_ref->{execution}{url} ) { - $xml_ref->{execution}{url} = - get_entry( 'Execution URL', - $xml_ref->{execution}{url}, - $option_default - ); - } - - # Grid FTP - if ( $xml_ref->{gridftp} ) { - $xml_ref->{gridftp}{url} = - get_entry( 'GridFTP URL', $xml_ref->{gridftp}{url}, $option_default); - } - - # Work directory - if ( $xml_ref->{workdirectory} ) { - $xml_ref->{workdirectory}[0] =~ s/\$HOME/$ENV{'HOME'}/; - $xml_ref->{workdirectory}[0] =~ s/\$USER/$ENV{'USER'}/; - $xml_ref->{workdirectory} = - [ get_entry( 'Work Directory', $xml_ref->{workdirectory}[0], $option_default) ]; - } - - # Job manager - if ( $xml_ref->{jobmanager} ) { - if ( $xml_ref->{jobmanager}{universe} ) { - $xml_ref->{jobmanager}{universe} = - get_entry( 'Job Universe', $xml_ref->{jobmanager}{universe}, $option_default); - } - if ( $xml_ref->{jobmanager}{url} ) { - $xml_ref->{jobmanager}{url} = - get_entry( 'Job Manager URL', $xml_ref->{jobmanager}{url}, $option_default); - } - if ( $xml_ref->{jobmanager}{major} ) { - $xml_ref->{jobmanager}{major} = - get_entry( 'Job Major Number', - $xml_ref->{jobmanager}{major}, $option_default); - } - if ( $xml_ref->{jobmanager}{minor} ) { - $xml_ref->{jobmanager}{minor} = - get_entry( 'Job Minor Number', - $xml_ref->{jobmanager}{minor}, $option_default); - } - } - - # Filesystem - if ( $xml_ref->{filesystem} ) { - if ( $xml_ref->{filesystem}{provider} ) { - $xml_ref->{filesystem}{provider} = get_entry( - 'Filesystem Provider', - $xml_ref->{filesystem}{provider}, - $option_default, - ); - } - if ( $xml_ref->{filesystem}{url} ) { - $xml_ref->{filesystem}{url} = - get_entry( 'Filesystem URL', $xml_ref->{filesystem}{url}, $option_default); - } - } - - # Profiles - foreach my $profile ( @{ $xml_ref->{profile} } ) { - $profile->{content} = - get_entry( $profile->{key}, $profile->{content}, $option_default); - } - return $xml_ref; -} - -# Write a file given variable and filename -sub write_file { - my ( $filename, @data ) = @_; - open( TEMPFILESTREAM, ">$filename" ) - or die("Unable to open $filename!\n"); - print TEMPFILESTREAM @data; - close(TEMPFILESTREAM); -} - -# Print all files in a directory -sub print_directory { - my ($directory) = @_; - chdir($directory) - || die "Unable to change directories to $directory\n"; - my @files = <*>; - foreach my $file (@files) { - ( my $basename, my $ext ) = split( /\./, $file ); - my @path = split( '/', $basename ); - print "$basename\n"; - } -} - -# Append one file to another -sub cat_file { - my ( $src, $dst ) = @_; - if ( -e $dst ) { - open( DSTFILE, ">>$dst" ) || die "Unable to open $dst for append\n"; - } - else { - open( DSTFILE, ">$dst" ) - or die "Unable to open $dst for writing\n"; - } - open( SRCFILE, $src ) || die "Unable to open $src for reading\n"; - foreach my $line () { - print DSTFILE $line; - } -} - -# Copy a file to a new location -sub copy_file { - my ( $src, $dst ) = @_; - if ( !-e $src ) { die "Unable to access $src\n"; } - if ( !-e $dst ) { die "Unable to access $dst\n"; } - copy( $src, $dst ) or die "Unable to copy $src to $dst\n"; -} - -# Strip directory name out of a string -sub strip_directory { - my ($fullpath) = @_; - my @path = split( '/', $fullpath ); - my $filename = $path[$#path]; - return $filename; -} - -# Add an application -sub add_application { - my ($app_filename) = @_; - open(APPFILE, "+<$app_filename") || die "Unable to open application file $app_filename for writing\n"; - - print "Enter name of new application: "; - my $app_name = ; - chomp($app_name); - foreach(){ - my ($site, $name, $path, $status, $platform, $profile) = split(/\s+/); - if($name eq $app_name) { - print "$name already exists\n"; - return; - } - } - my $app_path_guess = which("$app_name"); - if(!$app_path_guess) { - $app_path_guess = "/path/to/$app_name"; - } - my $app_path = get_entry("Path", $app_path_guess, 0); - my $app_time = get_entry("Walltime (hh:mm:ss)", "00:20:00", 0); - while($app_time !~ m/(\d+:\d+:\d+)/ ) { - print "Error: incorrect format\n"; - $app_time = get_entry("Walltime", $1, 0); - } - print APPFILE "SWIFTCONFIGURATION\t$app_name\t$app_path\tINSTALLED\tINTEL32::LINUX\tGLOBUS::maxwalltime=\"$app_time\"\n"; - close(APPFILE); - print "Added $app_name\n"; -} - -# Remove an application -sub remove_application { - my ($app_filename) = @_; - open(APPFILE, "$app_filename") || die "Unable to open application file $app_filename\n"; - my $app_to_remove = get_entry("Name of application to remove", '', 0); - my @app_data; - my $found=0; - foreach my $line (){ - my ($site, $name, $path, $status, $platform, $profile) = split(/\s+/, $line); - if($name eq $app_to_remove) { - $found=1; - } - else { - push(@app_data, $line); - } - } - close(APPFILE); - if(!$found) { - print "Unable to find application named $app_to_remove\n"; - return; - } - else { - write_file($app_filename, @app_data); - print "Removed $app_to_remove\n"; - } -} - -# List applications -sub list_applications { - my ($app_filename) = @_; - open(APPFILE, $app_filename) || die "Unable to open application file $app_filename\n"; - my @app_data = ; - close(APPFILE); - my ($site, $name, $path, $status, $platform, $profile); - my $counter=0; - my $header = sprintf("\n%-15s %-30s %-35s\n", 'Command Name', 'Path', 'Profile'); - $header .= sprintf("%-15s %-30s %-35s\n", '------------', '----', '-------'); - print $header; - foreach(@app_data) { - ($site, $name, $path, $status, $platform, $profile) = split(/\s+/); - if($name) { - my $nicely_formatted = sprintf("%-15s %-30s %-35s", $name, $path, $profile); - print "$nicely_formatted\n"; - } - } - -} - -# Edit application -sub edit_application { - my ($app_filename) = @_; - open(APPFILE, $app_filename) || die "Unable to open application file $app_filename\n"; - my @app_data = ; - close(APPFILE); - print "Application to edit: "; - my $app_to_edit = ; - chomp($app_to_edit); - - my $found=0; - foreach(@app_data) { - my ($site, $name, $path, $status, $platform, $profile) = split(/\s+/); - if( $name eq $app_to_edit) { - $found=1; - my $previous_name = $name; - # App name - $name = get_entry("New application name", $name, 0); - if($name ne $previous_name) { - $path = which("$name"); - } - # Path - if(!$path) { - $path = "/path/app"; - } - $path = get_entry("New path", $path, 0); - # Time - my $time = ''; - my $wallfound=0; - my $counter=0; - my @profiles = split(/;/, $profile); - foreach (@profiles) { - if( m/maxwalltime=\"(\d+:\d+:\d+)\"/ig ) { - $wallfound=1; - my $default_time = $1; - $time = get_entry("Walltime", $default_time, 0); - while($time !~ m/(\d+:\d+:\d+)/ ) { - print "Error: incorrect format\n"; - $time = get_entry("Walltime", $default_time, 0); - } - s/(\d+:\d+:\d+)/$time/g; - } - } - if( !$wallfound ) { - $time = get_entry("Time", "00:20:00", 0); - push(@profiles, "GLOBUS::maxwalltime=\"$time\""); - } - $profile = join(';', @profiles); - $_ = "$site\t$name\t$path\t$status\t$platform\t$profile\n"; - } - } - - if(!$found) { - print "Unable to find application named $app_to_edit\n"; - return; - } - else { - print "$app_to_edit updated\n"; - } - open(APPFILE, ">$app_filename") || die "Unable to open application file $app_filename for writing\n"; - print APPFILE @app_data; - close(APPFILE); -} - -# Initialize swiftconfig. Prepare things it needs for first run -sub initialize_swiftconfig { - create_directory("$ENV{'HOME'}/.swift"); - create_directory("$ENV{'HOME'}/.swift/sites"); - create_directory("$ENV{'HOME'}/.swift/groups"); - if(!-e "$ENV{'HOME'}/.swift/apps") { - create_directory("$ENV{'HOME'}/.swift/apps"); - my @app_files = glob("$FindBin::Bin/../etc/apps/*.apps"); - foreach my $app_file(@app_files) { - copy_file($app_file, "$ENV{'HOME'}/.swift/apps"); - } - } -} - -# Associate application sets with a configuration -sub update_site_applications { - my ($site, $use_defaults) = @_; - my $apps = ''; - - if(! -d "$ENV{'HOME'}/.swift/sites/$site") { - print "Unable to find configuration for $site\n"; - return; - } - - if(-e "$ENV{'HOME'}/.swift/sites/$site/apps") { - open(APPLIST, "$ENV{'HOME'}/.swift/sites/$site/apps") - || die "Unable to open app list $ENV{'HOME'}/.swift/sites/$site/apps"; - my @apps_file_data = ; - close(APPLIST); - foreach my $current_app (@apps_file_data) { - chomp($current_app); - if($apps) { - $apps = "$apps $current_app"; - } - else { - $apps = "$current_app"; - } - } - } - - if(!$use_defaults) { - my @all_available_appsets = glob("$ENV{'HOME'}/.swift/apps/*.apps"); - print "Available application sets: "; - foreach(@all_available_appsets) { - $_ = strip_directory($_); - ($_, my $junk) = split('\.'); - print "$_ "; - } - print "\n"; - } - - if(!$apps) { - $apps = "linux"; - } - - $apps = get_entry("Select application sets for $site", $apps, $use_defaults); - my @all_list = split(/ /, $apps); - open(APPFILE, ">$ENV{'HOME'}/.swift/sites/$site/apps") - || die "Unable to open $ENV{'HOME'}/.swift/sites/$site/apps for writing!\n"; - - foreach(@all_list) { - print APPFILE "$_\n"; - } - close(APPFILE); - - if(!$use_defaults) { - print "Successfully saved application sets for $site\n\n"; - } -} - -# Import existing XML file into swiftconfig style format -sub import_xml { - my ($xml_filename) = @_; - if(! -e $xml_filename) { - die "Unable to find file to import: $xml_filename\n"; - } - - my $xml_ref = $xml->XMLin( - $xml_filename, - ForceArray => [qw(workdirectory profile pool)], - KeyAttr => "pool", - ); - - foreach my $pool ( @{$xml_ref->{pool}} ) { - if(-d "$ENV{'HOME'}/.swift/sites/$pool->{handle}") { - print "Configuration for $pool->{handle} already exists. Skipping\n"; - } - else { - create_directory("$ENV{'HOME'}/.swift/sites/$pool->{handle}"); - my $xml_out_ref = $xml->XMLout( - $pool, - RootName => 'pool', - SuppressEmpty => 1, - ); - write_file("$ENV{'HOME'}/.swift/sites/$pool->{handle}/sites.xml", - $xml_out_ref ); - update_site_applications($pool->{handle}); - } - } -} - -# Import tc.data files into swiftconfig application set -sub import_tc { - my ($tc_filename) = @_; - if(! -e $tc_filename) { - die "Unable to find file to import: $tc_filename\n"; - } - open(TCFILE, $tc_filename) || die "Unable to open $tc_filename for reading\n"; - my @tc_data = ; - close(TCFILE); - foreach(@tc_data) { - my ($site, $name, $path, $status, $platform, $profile) = split(/\s+/); - $site = "SWIFTCONFIGURATION"; - if(!$name) { - $_ = ''; - next; - } - my $first_character = substr( $_, 0, 1 ); - if ( $first_character eq '#' ) { - $_ = ''; - next; - } - $_ = "$site\t$name\t$path\t$status\t$platform\t$profile\n"; - } - print "Enter name to call this application set: "; - my $set_name = ; - chomp($set_name); - - if(-e "$ENV{'HOME'}/.swift/apps/$set_name.apps") { - print "Set named $set_name already exists\n"; - my $yesno = get_entry("Overwrite $set_name?", "No", 0, ("yes", "no")); - if($yesno eq "no") { - return; - } - } - - write_file("$ENV{'HOME'}/.swift/apps/$set_name.apps", @tc_data); - print "Successfully imported application set named $set_name\n"; -} - -sub edit_profile { - my ($xml_filename, @profiles_to_edit) = @_; - if(! -e $xml_filename) { - print "Unable to edit profile on $xml_filename\n"; - return; - } - - my $xml_ref = $xml->XMLin( - $xml_filename, - ForceArray => [qw(workdirectory profile)], - KeyAttr => [], - ); - - - foreach my $profile ( @{ $xml_ref->{profile} } ) { - foreach my $profile_to_edit(@profiles_to_edit) { - if(lc($profile->{key}) eq lc($profile_to_edit)) { - $profile->{content} = - get_entry( $profile->{key}, $profile->{content}, 0); - } - } - } - - return $xml_ref; -} - -sub add_to_group { - my ($group_filename) = @_; - if(!-e $group_filename) { - print "Unable to find file $group_filename for editing\n"; - return; - } - open(GROUPFILE, ">>$group_filename") || die "Error opening $group_filename\n"; - my @all_sites = glob("$ENV{'HOME'}/.swift/sites/*"); - foreach(@all_sites) { - $_ = strip_directory($_); - } - my $new_site = get_entry("Enter name of site to add", '', 0, @all_sites); - - print GROUPFILE "$new_site\n"; - close(GROUPFILE); -} - -sub list_group { - my ($group_filename) = @_; - if(!-e $group_filename) { - print "Unable to find $group_filename for editing\n"; - return; - } - system("cat $group_filename"); -} - -sub remove_from_group { - my ($group_filename) = @_; - if(!-e $group_filename) { - print "Unable to find $group_filename for editing\n"; - return; - } - - open(GROUPFILE, $group_filename) || die "Error opening $group_filename\n"; - my @group_data = ; - close(GROUPFILE); - - my $remove_group = get_entry("Enter name of site to remove", '', 0); - $remove_group .= "\n"; - - my $found=0; - foreach(@group_data) { - if($_ eq $remove_group) - { - $found=1; - $_ = ''; - } - } - if(!$found) { - print "Unable to find site $remove_group. Use 'l' to get a list\n"; - } - write_file($group_filename, @group_data); -} -1; -__END__ - -=head1 SwiftConfig - -SwiftConfig - Perl module for swiftconfig and swiftrun applications - -=head1 SYNOPSIS - - use SwiftConfig; - -=head1 DESCRIPTION - -The SwiftConfig module provides a set of standard routines needed to handle -Swift Configuration. - -create_directory(directory_name) - Creates a directory, handles errors - -get_entry($entry_description, $entry_value, $use_default, @allowable_values) - get_entry is used to get input from the user - $entry_description is used to describe the data to the user - $entry_value is the default value. If the user hits enter, it will be used - $use_default, if true, will set input to $entry_value without prompting - @allowable_values is a list of all available options for that input - -add_ssh($ssh_site, $ssh_url) - Add an entry to ~/.ssh/auth.defaults - $ssh_site is the swift configuration name - $ssh_url is the network name/address to connect to - -remove_ssh($ssh_url) - Remove an entry from ~/.ssh/auth.defaults - $ssh_url is the network name/address to remove - -update_tc_hostname($filename, $tc_hostname) - Change the site name in a tc.data file - $filename is the filename of the tc.data - $tc_hostname is the value of the new hostname - -update_xml($xml_filename, $edit_mode, $option_default) - Edit and update a sites.xml file - $xml_filename filename to edit - There are currently two edit modes: 0=edit everything, 1=everything but name - $option_default, if true, will automatically use defaults - -write_file($filename, @data) - Write to $filename with @data. Handle errors - -print_directory($directory) - List all files within a directory without paths - -cat_file($src, $dst) - Concatenate $src to $dst, handle errors - -copy_file($src, $dst) - Copy file $src to $dst, handle errors - -strip_directory($fullpath) - Given a string like "/foo/blah/file.txt", return "file.txt" - -add_application($filename) - Add an application to an application set - -remove_application($filename) - Remove an application from an application set - -list_applications($filename) - List all applications contained in $filename - -edit_application($filename) - Edit an application in $filename - -initialize_swiftconfig() - Set up swiftconig directory structure and copy required files - -update_site_applications($site, $use_defaults) - Associate application sets with a configuration - $site is the name of the configuration - If $use_defaults > 0, it will save without prompting - -import_xml($filename) - Import existing site configuration(s) from $filename - -import_tc($filename) - Import an application set from an existing tc.data file - -=cut From davidk at ci.uchicago.edu Wed Jan 22 13:31:58 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 22 Jan 2014 13:31:58 -0600 (CST) Subject: [Swift-commit] r7490 - trunk/bin Message-ID: <20140122193158.3D2289CFE9@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-22 13:31:58 -0600 (Wed, 22 Jan 2014) New Revision: 7490 Modified: trunk/bin/swiftrun Log: Fix namespace issue when using scheduler passthru Modified: trunk/bin/swiftrun =================================================================== --- trunk/bin/swiftrun 2014-01-22 17:01:02 UTC (rev 7489) +++ trunk/bin/swiftrun 2014-01-22 19:31:58 UTC (rev 7490) @@ -125,6 +125,11 @@ $value = hhmmss_to_seconds($value); } + elsif ( $property =~ m/^(slurm|condor)/ ) { + my ( $xmlnamespace, $xmlproperty ) = split(/\./, $site_aliases{ $propertyStart }); + return "" . $value . "\n"; + } + elsif ( $property eq "taskthrottle" ) { $value = number_to_throttle($value); } @@ -132,7 +137,7 @@ elsif ( $property eq "taskwalltime" ) { verify_in_hhmmss($key, $value); } - + elsif ( $property eq "jobmanager" ) { my $ccount = ($value =~ s/:/:/g); my $jobmanager = ""; @@ -161,6 +166,7 @@ return "\n"; } + # Define a non-coaster protocol elsif ( $ccount >= 3) { (my $first, my $second, my $third, my $fourth) = split(':', $value, 4); $provider=$first; @@ -177,8 +183,8 @@ my ( $xmlnamespace, $xmlproperty ) = split(/\./, $site_aliases{ $propertyStart }); if ( defined($xmlnamespace) && defined($xmlproperty)) { return "" . $value . "\n"; - } -} + } +} # Write apps to file in tc.data format sub write_apps { From swift at ci.uchicago.edu Wed Jan 22 13:40:03 2014 From: swift at ci.uchicago.edu (swift at ci.uchicago.edu) Date: Wed, 22 Jan 2014 13:40:03 -0600 (CST) Subject: [Swift-commit] cog r3860 Message-ID: <20140122194003.E4DE98D000A6@bridled.ci.uchicago.edu> ------------------------------------------------------------------------ r3860 | hategan | 2014-01-22 13:38:22 -0600 (Wed, 22 Jan 2014) | 1 line fixed thread creation and throw exceptions if any of the thread operations fail ------------------------------------------------------------------------ Index: modules/provider-coaster-c-client/src/CoasterLoop.cpp =================================================================== --- modules/provider-coaster-c-client/src/CoasterLoop.cpp (revision 3859) +++ modules/provider-coaster-c-client/src/CoasterLoop.cpp (working copy) @@ -45,7 +45,9 @@ FD_SET(wakePipe[0], &rfds); updateMaxFD(); - thread = pthread_create(&thread, NULL, run, this); + if (pthread_create(&thread, NULL, run, this) != 0) { + throw CoasterError(string("Could not create thread: ") + strerror(errno)); + } started = true; } @@ -64,7 +66,9 @@ * must release lock before calling pthread_join * in case run() is waiting for the lock */ - pthread_join(thread, NULL); + if (pthread_join(thread, NULL) != 0) { + throw CoasterError(string("Could not join thread: ") + strerror(errno)); + } LogInfo << "Coaster loop stopped" << endl; } From davidk at ci.uchicago.edu Wed Jan 22 13:50:43 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 22 Jan 2014 13:50:43 -0600 (CST) Subject: [Swift-commit] r7491 - branches/release-0.95/bin Message-ID: <20140122195043.433029CFE9@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-22 13:50:43 -0600 (Wed, 22 Jan 2014) New Revision: 7491 Modified: branches/release-0.95/bin/swiftrun Log: Scheduler bypass fix from trunk Modified: branches/release-0.95/bin/swiftrun =================================================================== --- branches/release-0.95/bin/swiftrun 2014-01-22 19:31:58 UTC (rev 7490) +++ branches/release-0.95/bin/swiftrun 2014-01-22 19:50:43 UTC (rev 7491) @@ -125,6 +125,11 @@ $value = hhmmss_to_seconds($value); } + elsif ( $property =~ m/^(slurm|condor)/ ) { + my ( $xmlnamespace, $xmlproperty ) = split(/\./, $site_aliases{ $propertyStart }); + return "" . $value . "\n"; + } + elsif ( $property eq "taskthrottle" ) { $value = number_to_throttle($value); } @@ -132,7 +137,7 @@ elsif ( $property eq "taskwalltime" ) { verify_in_hhmmss($key, $value); } - + elsif ( $property eq "jobmanager" ) { my $ccount = ($value =~ s/:/:/g); my $jobmanager = ""; @@ -161,6 +166,7 @@ return "\n"; } + # Define a non-coaster protocol elsif ( $ccount >= 3) { (my $first, my $second, my $third, my $fourth) = split(':', $value, 4); $provider=$first; @@ -177,8 +183,8 @@ my ( $xmlnamespace, $xmlproperty ) = split(/\./, $site_aliases{ $propertyStart }); if ( defined($xmlnamespace) && defined($xmlproperty)) { return "" . $value . "\n"; - } -} + } +} # Write apps to file in tc.data format sub write_apps { From davidk at ci.uchicago.edu Wed Jan 22 13:55:02 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 22 Jan 2014 13:55:02 -0600 (CST) Subject: [Swift-commit] r7492 - branches/release-0.95/bin Message-ID: <20140122195502.AF77C9CFE9@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-22 13:55:02 -0600 (Wed, 22 Jan 2014) New Revision: 7492 Modified: branches/release-0.95/bin/swiftrun Log: Condor passthru alias Modified: branches/release-0.95/bin/swiftrun =================================================================== --- branches/release-0.95/bin/swiftrun 2014-01-22 19:50:43 UTC (rev 7491) +++ branches/release-0.95/bin/swiftrun 2014-01-22 19:55:02 UTC (rev 7492) @@ -29,6 +29,7 @@ # List of xml shortcuts my %site_aliases = ( 'allocationstepsize' => 'globus.allocationStepSize', + 'condor' => 'globus.condor', 'delaybase' => 'karajan.delayBase', 'filesystem' => 'filesystem', 'highoverallocation' => 'globus.highOverallocation', From davidk at ci.uchicago.edu Wed Jan 22 13:55:44 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 22 Jan 2014 13:55:44 -0600 (CST) Subject: [Swift-commit] r7493 - trunk/bin Message-ID: <20140122195544.A81639CFE9@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-22 13:55:44 -0600 (Wed, 22 Jan 2014) New Revision: 7493 Modified: trunk/bin/swiftrun Log: Condor passthru alias Modified: trunk/bin/swiftrun =================================================================== --- trunk/bin/swiftrun 2014-01-22 19:55:02 UTC (rev 7492) +++ trunk/bin/swiftrun 2014-01-22 19:55:44 UTC (rev 7493) @@ -29,6 +29,7 @@ # List of xml shortcuts my %site_aliases = ( 'allocationstepsize' => 'globus.allocationStepSize', + 'condor' => 'globus.condor', 'delaybase' => 'karajan.delayBase', 'filesystem' => 'filesystem', 'highoverallocation' => 'globus.highOverallocation', From davidk at ci.uchicago.edu Wed Jan 22 14:57:34 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 22 Jan 2014 14:57:34 -0600 (CST) Subject: [Swift-commit] r7494 - branches/release-0.95/etc/templates Message-ID: <20140122205734.B9D689CFE9@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-22 14:57:34 -0600 (Wed, 22 Jan 2014) New Revision: 7494 Modified: branches/release-0.95/etc/templates/swift.properties Log: Templates for osgconnect Modified: branches/release-0.95/etc/templates/swift.properties =================================================================== --- branches/release-0.95/etc/templates/swift.properties 2014-01-22 19:55:44 UTC (rev 7493) +++ branches/release-0.95/etc/templates/swift.properties 2014-01-22 20:57:34 UTC (rev 7494) @@ -92,3 +92,26 @@ filesystem=local workdir=/scratch/midway/$USER/work } + +# +# OSG Sites +# +site.osgconnect { + jobManager=condor + initialScore=10000 + tasksPerWorker=1 + jobGranularity=1 + jobType=nonshared + condor.+ProjectName=Swift + workdir=. +} + +site.osgconnect-ssh { + jobManager=login.osgconnect.net:condor + initialScore=10000 + tasksPerWorker=1 + jobGranularity=1 + jobType=nonshared + condor.+ProjectName=Swift + workdir=. +} From davidk at ci.uchicago.edu Wed Jan 22 16:40:44 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 22 Jan 2014 16:40:44 -0600 (CST) Subject: [Swift-commit] r7495 - branches/release-0.95/etc/templates Message-ID: <20140122224044.470899CFE9@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-22 16:40:44 -0600 (Wed, 22 Jan 2014) New Revision: 7495 Modified: branches/release-0.95/etc/templates/swift.properties Log: ssh configurations for midway and beagle Modified: branches/release-0.95/etc/templates/swift.properties =================================================================== --- branches/release-0.95/etc/templates/swift.properties 2014-01-22 20:57:34 UTC (rev 7494) +++ branches/release-0.95/etc/templates/swift.properties 2014-01-22 22:40:44 UTC (rev 7495) @@ -14,6 +14,7 @@ # site.beagle-development { jobManager=pbs + jobQueue=development tasksPerWorker=24 providerAttributes=pbs.aprun;pbs.mpp;depth=24 jobWalltime=00:30:00 @@ -23,17 +24,27 @@ initialScore=10000 filesystem=local workDir=/lustre/beagle/$USER/swiftwork - jobQueue=development } site.beagle { jobManager=pbs + jobQueue=batch tasksPerWorker=24 providerAttributes=pbs.aprun;pbs.mpp;depth=24 initialScore=10000 filesystem=local workDir=/lustre/beagle/$USER/swiftwork +} + +site.beagle-ssh { + jobManager=login4.beagle.ci.uchicago.edu:pbs jobQueue=batch + tasksPerWorker=24 + providerAttributes=pbs.aprun;pbs.mpp;depth=24 + initialScore=10000 + filesystem=local + workDir=/lustre/beagle/$USER/swiftwork + userHomeOverride=/lustre/beagle/$USER } # @@ -41,8 +52,8 @@ # site.midway-amd { jobManager=slurm + jobQueue=amd tasksPerWorker=64 - jobQueue=amd initialScore=10000 filesystem=local workdir=/scratch/midway/$USER/swiftwork @@ -50,8 +61,8 @@ site.midway-bigmem { jobManager=slurm + jobQueue=bigmem tasksPerWorker=16 - jobQueue=bigmem initialScore=10000 filesystem=local workdir=/scratch/midway/$USER/work @@ -59,8 +70,8 @@ site.midway-gpu { jobManager=slurm + jobQueue=gpu tasksPerWorker=16 - jobQueue=gpu initialScore=10000 filesystem=local workdir=/scratch/midway/$USER/work @@ -68,7 +79,16 @@ site.midway { jobManager=slurm + jobQueue=sandyb tasksPerWorker=16 + initialScore=10000 + filesystem=local + workdir=/scratch/midway/$USER/work +} + +site.midway-ssh { + jobManager=midway.rcc.uchicago.edu:slurm + tasksPerWorker=16 jobQueue=sandyb initialScore=10000 filesystem=local @@ -77,8 +97,8 @@ site.midway-sandyb { jobManager=slurm + jobQueue=sandyb tasksPerWorker=16 - jobQueue=sandyb initialScore=10000 filesystem=local workdir=/scratch/midway/$USER/work @@ -86,8 +106,8 @@ site.midway-westmere { jobManager=slurm + jobQueue=westmere tasksPerWorker=12 - jobQueue=westmere initialScore=10000 filesystem=local workdir=/scratch/midway/$USER/work From davidk at ci.uchicago.edu Wed Jan 22 16:41:14 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 22 Jan 2014 16:41:14 -0600 (CST) Subject: [Swift-commit] r7496 - trunk/etc/templates Message-ID: <20140122224114.8E1C89CFE9@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-22 16:41:14 -0600 (Wed, 22 Jan 2014) New Revision: 7496 Modified: trunk/etc/templates/swift.properties Log: Updates templates from 0.95 Modified: trunk/etc/templates/swift.properties =================================================================== --- trunk/etc/templates/swift.properties 2014-01-22 22:40:44 UTC (rev 7495) +++ trunk/etc/templates/swift.properties 2014-01-22 22:41:14 UTC (rev 7496) @@ -14,6 +14,7 @@ # site.beagle-development { jobManager=pbs + jobQueue=development tasksPerWorker=24 providerAttributes=pbs.aprun;pbs.mpp;depth=24 jobWalltime=00:30:00 @@ -23,17 +24,27 @@ initialScore=10000 filesystem=local workDir=/lustre/beagle/$USER/swiftwork - jobQueue=development } site.beagle { jobManager=pbs + jobQueue=batch tasksPerWorker=24 providerAttributes=pbs.aprun;pbs.mpp;depth=24 initialScore=10000 filesystem=local workDir=/lustre/beagle/$USER/swiftwork +} + +site.beagle-ssh { + jobManager=login4.beagle.ci.uchicago.edu:pbs jobQueue=batch + tasksPerWorker=24 + providerAttributes=pbs.aprun;pbs.mpp;depth=24 + initialScore=10000 + filesystem=local + workDir=/lustre/beagle/$USER/swiftwork + userHomeOverride=/lustre/beagle/$USER } # @@ -41,8 +52,8 @@ # site.midway-amd { jobManager=slurm + jobQueue=amd tasksPerWorker=64 - jobQueue=amd initialScore=10000 filesystem=local workdir=/scratch/midway/$USER/swiftwork @@ -50,8 +61,8 @@ site.midway-bigmem { jobManager=slurm + jobQueue=bigmem tasksPerWorker=16 - jobQueue=bigmem initialScore=10000 filesystem=local workdir=/scratch/midway/$USER/work @@ -59,8 +70,8 @@ site.midway-gpu { jobManager=slurm + jobQueue=gpu tasksPerWorker=16 - jobQueue=gpu initialScore=10000 filesystem=local workdir=/scratch/midway/$USER/work @@ -68,7 +79,16 @@ site.midway { jobManager=slurm + jobQueue=sandyb tasksPerWorker=16 + initialScore=10000 + filesystem=local + workdir=/scratch/midway/$USER/work +} + +site.midway-ssh { + jobManager=midway.rcc.uchicago.edu:slurm + tasksPerWorker=16 jobQueue=sandyb initialScore=10000 filesystem=local @@ -77,8 +97,8 @@ site.midway-sandyb { jobManager=slurm + jobQueue=sandyb tasksPerWorker=16 - jobQueue=sandyb initialScore=10000 filesystem=local workdir=/scratch/midway/$USER/work @@ -86,9 +106,32 @@ site.midway-westmere { jobManager=slurm + jobQueue=westmere tasksPerWorker=12 - jobQueue=westmere initialScore=10000 filesystem=local workdir=/scratch/midway/$USER/work } + +# +# OSG Sites +# +site.osgconnect { + jobManager=condor + initialScore=10000 + tasksPerWorker=1 + jobGranularity=1 + jobType=nonshared + condor.+ProjectName=Swift + workdir=. +} + +site.osgconnect-ssh { + jobManager=login.osgconnect.net:condor + initialScore=10000 + tasksPerWorker=1 + jobGranularity=1 + jobType=nonshared + condor.+ProjectName=Swift + workdir=. +} From davidk at ci.uchicago.edu Wed Jan 22 16:42:51 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 22 Jan 2014 16:42:51 -0600 (CST) Subject: [Swift-commit] r7497 - branches/release-0.95/bin Message-ID: <20140122224251.6938C9CFE9@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-22 16:42:51 -0600 (Wed, 22 Jan 2014) New Revision: 7497 Modified: branches/release-0.95/bin/swiftrun Log: Add alias for undocumented userHomeOverride Modified: branches/release-0.95/bin/swiftrun =================================================================== --- branches/release-0.95/bin/swiftrun 2014-01-22 22:41:14 UTC (rev 7496) +++ branches/release-0.95/bin/swiftrun 2014-01-22 22:42:51 UTC (rev 7497) @@ -54,6 +54,7 @@ 'tasksperworker' => 'globus.jobsPerNode', 'taskthrottle' => 'karajan.jobThrottle', 'taskwalltime' => 'globus.maxwalltime', + 'userhomeoverride' => 'globus.userHomeOverride', 'workdir' => 'workdir', 'workerloglevel' => 'globus.workerlogginglevel', 'workerlogdirectory' => 'globus.workerloggingdirectory', From davidk at ci.uchicago.edu Wed Jan 22 16:43:49 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 22 Jan 2014 16:43:49 -0600 (CST) Subject: [Swift-commit] r7498 - trunk/bin Message-ID: <20140122224349.DDC4E9CFE9@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-22 16:43:49 -0600 (Wed, 22 Jan 2014) New Revision: 7498 Modified: trunk/bin/swiftrun Log: userHomeOverride Modified: trunk/bin/swiftrun =================================================================== --- trunk/bin/swiftrun 2014-01-22 22:42:51 UTC (rev 7497) +++ trunk/bin/swiftrun 2014-01-22 22:43:49 UTC (rev 7498) @@ -54,6 +54,7 @@ 'tasksperworker' => 'globus.jobsPerNode', 'taskthrottle' => 'karajan.jobThrottle', 'taskwalltime' => 'globus.maxwalltime', + 'userhomeoverride' => 'globus.userHomeOverride', 'workdir' => 'workdir', 'workerloglevel' => 'globus.workerlogginglevel', 'workerlogdirectory' => 'globus.workerloggingdirectory', From hategan at ci.uchicago.edu Wed Jan 22 16:51:04 2014 From: hategan at ci.uchicago.edu (hategan at ci.uchicago.edu) Date: Wed, 22 Jan 2014 16:51:04 -0600 (CST) Subject: [Swift-commit] r7499 - trunk/src/org/griphyn/vdl/karajan/lib Message-ID: <20140122225104.5304C9CFE9@svn.ci.uchicago.edu> Author: hategan Date: 2014-01-22 16:51:04 -0600 (Wed, 22 Jan 2014) New Revision: 7499 Modified: trunk/src/org/griphyn/vdl/karajan/lib/RuntimeStats.java Log: added code to regularly log memory usage of the swift process Modified: trunk/src/org/griphyn/vdl/karajan/lib/RuntimeStats.java =================================================================== --- trunk/src/org/griphyn/vdl/karajan/lib/RuntimeStats.java 2014-01-22 22:43:49 UTC (rev 7498) +++ trunk/src/org/griphyn/vdl/karajan/lib/RuntimeStats.java 2014-01-22 22:51:04 UTC (rev 7499) @@ -288,7 +288,7 @@ } } } - + void shutdown() { shutdown = true; } @@ -379,6 +379,16 @@ logger.info(msg); } + if (logger.isInfoEnabled()) { + Runtime r = Runtime.getRuntime(); + long maxHeap = r.maxMemory(); + long freeMemory = r.freeMemory(); + long totalMemory = r.totalMemory(); + long usedMemory = totalMemory - freeMemory; + + logger.info("HeapMax: " + maxHeap + ", CrtHeap: " + totalMemory + ", UsedHeap: " + usedMemory); + } + return true; } From davidk at ci.uchicago.edu Wed Jan 22 16:58:36 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 22 Jan 2014 16:58:36 -0600 (CST) Subject: [Swift-commit] r7500 - trunk/docs/userguide Message-ID: <20140122225836.A25859CFE9@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-22 16:58:36 -0600 (Wed, 22 Jan 2014) New Revision: 7500 Modified: trunk/docs/userguide/configuration Log: Add brief description for some undocumented site parameters Modified: trunk/docs/userguide/configuration =================================================================== --- trunk/docs/userguide/configuration 2014-01-22 22:51:04 UTC (rev 7499) +++ trunk/docs/userguide/configuration 2014-01-22 22:58:36 UTC (rev 7500) @@ -172,6 +172,12 @@ |================================ |Property|Description|Example +|condor| +Pass parameters directly through to the submit script generated for the condor +scheduler. For example, the setting "site.osgconnect.condor.+projectname=Swift" +will generate the line "+projectname = Swift". +|site.osgconnect.condor.+projectname=Swift + |filesystem| Defines how files should be accessed |site.westmere.filesystem=local @@ -211,6 +217,11 @@ only implemented for sites that use PBS. |site.beagle.providerAttributes=pbs.aprun;pbs.mpp;depth=24 +|slurm| +Pass parameters directly through to the submit script generated for the slurm +scheduler. For example, the setting "site.midway.slurm.mail-user=username" generates +the line "#SBATCH --mail-user=username". + |taskDir| Tasks will be run from this directory. In the absence of a taskDir definition, Swift will run the task from workdir. @@ -233,6 +244,12 @@ swift -site |site=westmere +|userHomeOverride| +Sets the Swift user home. This must be a shared filesystem. This defaults +to $HOME. For clusters where $HOME is not accessible to the worker nodes, +you may override the value to point to a shared directory that you own. +|site.beagle.userHomeOverride=/lustre/beagle/username + |workdir | The workdirectory element specifies where on the site files can be stored. This directory must be available on all worker nodes that will be used for From davidk at ci.uchicago.edu Wed Jan 22 17:00:20 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 22 Jan 2014 17:00:20 -0600 (CST) Subject: [Swift-commit] r7501 - branches/release-0.95/libexec Message-ID: <20140122230020.E7AC69CFE9@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-22 17:00:20 -0600 (Wed, 22 Jan 2014) New Revision: 7501 Modified: branches/release-0.95/libexec/release.txt Log: RC3 Modified: branches/release-0.95/libexec/release.txt =================================================================== --- branches/release-0.95/libexec/release.txt 2014-01-22 22:58:36 UTC (rev 7500) +++ branches/release-0.95/libexec/release.txt 2014-01-22 23:00:20 UTC (rev 7501) @@ -1 +1 @@ -0.95 RC2 +0.95 RC3 From davidk at ci.uchicago.edu Wed Jan 22 17:07:19 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 22 Jan 2014 17:07:19 -0600 (CST) Subject: [Swift-commit] r7502 - tags Message-ID: <20140122230719.8C3C69CFE9@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-22 17:07:19 -0600 (Wed, 22 Jan 2014) New Revision: 7502 Added: tags/swift-0.95-RC3/ Log: RC3 tag From swift at ci.uchicago.edu Wed Jan 22 17:10:03 2014 From: swift at ci.uchicago.edu (swift at ci.uchicago.edu) Date: Wed, 22 Jan 2014 17:10:03 -0600 (CST) Subject: [Swift-commit] cog r3862 Message-ID: <20140122231004.145348D000A6@bridled.ci.uchicago.edu> ------------------------------------------------------------------------ r3862 | hategan | 2014-01-22 17:07:38 -0600 (Wed, 22 Jan 2014) | 1 line added code to regularly log memory usage of the coaster service process ------------------------------------------------------------------------ Index: modules/provider-coaster/src/org/globus/cog/abstraction/coaster/service/job/manager/BlockQueueProcessor.java =================================================================== --- modules/provider-coaster/src/org/globus/cog/abstraction/coaster/service/job/manager/BlockQueueProcessor.java (revision 3861) +++ modules/provider-coaster/src/org/globus/cog/abstraction/coaster/service/job/manager/BlockQueueProcessor.java (working copy) @@ -148,6 +148,16 @@ synchronized (incoming) { incoming.wait(Math.min(planTimeMillis * 20, 10000) + 1000); } + + if (logger.isInfoEnabled()) { + Runtime r = Runtime.getRuntime(); + long maxHeap = r.maxMemory(); + long freeMemory = r.freeMemory(); + long totalMemory = r.totalMemory(); + long usedMemory = totalMemory - freeMemory; + + logger.info("HeapMax: " + maxHeap + ", CrtHeap: " + totalMemory + ", UsedHeap: " + usedMemory); + } } if (shuttingDown) { logger.info("Service shutting down. Exiting planning loop."); From hategan at ci.uchicago.edu Wed Jan 22 21:17:26 2014 From: hategan at ci.uchicago.edu (hategan at ci.uchicago.edu) Date: Wed, 22 Jan 2014 21:17:26 -0600 (CST) Subject: [Swift-commit] r7503 - branches/release-0.94/src/org/griphyn/vdl/karajan/lib Message-ID: <20140123031726.2A54C9CFE9@svn.ci.uchicago.edu> Author: hategan Date: 2014-01-22 21:17:26 -0600 (Wed, 22 Jan 2014) New Revision: 7503 Modified: branches/release-0.94/src/org/griphyn/vdl/karajan/lib/RuntimeStats.java Log: added code to regularly log memory usage of the swift process Modified: branches/release-0.94/src/org/griphyn/vdl/karajan/lib/RuntimeStats.java =================================================================== --- branches/release-0.94/src/org/griphyn/vdl/karajan/lib/RuntimeStats.java 2014-01-22 23:07:19 UTC (rev 7502) +++ branches/release-0.94/src/org/griphyn/vdl/karajan/lib/RuntimeStats.java 2014-01-23 03:17:26 UTC (rev 7503) @@ -271,6 +271,15 @@ if (logger.isInfoEnabled()) { logger.info(msg); } + if (logger.isInfoEnabled()) { + Runtime r = Runtime.getRuntime(); + long maxHeap = r.maxMemory(); + long freeMemory = r.freeMemory(); + long totalMemory = r.totalMemory(); + long usedMemory = totalMemory - freeMemory; + + logger.info("HeapMax: " + maxHeap + ", CrtHeap: " + totalMemory + ", UsedHeap: " + usedMemory); + } } } From swift at ci.uchicago.edu Wed Jan 22 21:20:05 2014 From: swift at ci.uchicago.edu (swift at ci.uchicago.edu) Date: Wed, 22 Jan 2014 21:20:05 -0600 (CST) Subject: [Swift-commit] cog r3863 Message-ID: <20140123032005.120278D000A6@bridled.ci.uchicago.edu> ------------------------------------------------------------------------ r3863 | hategan | 2014-01-22 21:18:07 -0600 (Wed, 22 Jan 2014) | 1 line added code to regularly log memory usage of the coaster service process ------------------------------------------------------------------------ Index: modules/provider-coaster/src/org/globus/cog/abstraction/coaster/service/CoasterService.java =================================================================== --- modules/provider-coaster/src/org/globus/cog/abstraction/coaster/service/CoasterService.java (revision 3862) +++ modules/provider-coaster/src/org/globus/cog/abstraction/coaster/service/CoasterService.java (working copy) @@ -250,6 +250,7 @@ while (!done) { wait(10000); checkIdleTime(); + logMemoryUsage(); } if (exceptionAtStop != null) { throw exceptionAtStop; @@ -257,6 +258,20 @@ } } + private void logMemoryUsage() { + if (!local) { + if (logger.isInfoEnabled()) { + Runtime r = Runtime.getRuntime(); + long maxHeap = r.maxMemory(); + long freeMemory = r.freeMemory(); + long totalMemory = r.totalMemory(); + long usedMemory = totalMemory - freeMemory; + + logger.info("HeapMax: " + maxHeap + ", CrtHeap: " + totalMemory + ", UsedHeap: " + usedMemory); + } + } + } + @Override public void irrecoverableChannelError(KarajanChannel channel, Exception e) { logger.warn("irrecoverable channel error!\n\t" + e); From swift at ci.uchicago.edu Wed Jan 22 21:20:06 2014 From: swift at ci.uchicago.edu (swift at ci.uchicago.edu) Date: Wed, 22 Jan 2014 21:20:06 -0600 (CST) Subject: [Swift-commit] cog r3864 Message-ID: <20140123032006.772E48D000A6@bridled.ci.uchicago.edu> ------------------------------------------------------------------------ r3864 | hategan | 2014-01-22 21:20:01 -0600 (Wed, 22 Jan 2014) | 1 line moved memory logging code to a place that makes more sense ------------------------------------------------------------------------ Index: modules/provider-coaster/src/org/globus/cog/abstraction/coaster/service/CoasterService.java =================================================================== --- modules/provider-coaster/src/org/globus/cog/abstraction/coaster/service/CoasterService.java (revision 3863) +++ modules/provider-coaster/src/org/globus/cog/abstraction/coaster/service/CoasterService.java (working copy) @@ -250,6 +250,7 @@ while (!done) { wait(10000); checkIdleTime(); + logMemoryUsage(); } if (exceptionAtStop != null) { throw exceptionAtStop; @@ -257,6 +258,20 @@ } } + private void logMemoryUsage() { + if (!local) { + if (logger.isInfoEnabled()) { + Runtime r = Runtime.getRuntime(); + long maxHeap = r.maxMemory(); + long freeMemory = r.freeMemory(); + long totalMemory = r.totalMemory(); + long usedMemory = totalMemory - freeMemory; + + logger.info("HeapMax: " + maxHeap + ", CrtHeap: " + totalMemory + ", UsedHeap: " + usedMemory); + } + } + } + @Override public void irrecoverableChannelError(CoasterChannel channel, Exception e) { logger.warn("irrecoverable channel error!\n\t" + e); @@ -504,6 +519,4 @@ public void setDefaultQP(String defaultQP) { this.defaultQP = defaultQP; } - - } Index: modules/provider-coaster/src/org/globus/cog/abstraction/coaster/service/job/manager/BlockQueueProcessor.java =================================================================== --- modules/provider-coaster/src/org/globus/cog/abstraction/coaster/service/job/manager/BlockQueueProcessor.java (revision 3863) +++ modules/provider-coaster/src/org/globus/cog/abstraction/coaster/service/job/manager/BlockQueueProcessor.java (working copy) @@ -148,16 +148,6 @@ synchronized (incoming) { incoming.wait(Math.min(planTimeMillis * 20, 10000) + 1000); } - - if (logger.isInfoEnabled()) { - Runtime r = Runtime.getRuntime(); - long maxHeap = r.maxMemory(); - long freeMemory = r.freeMemory(); - long totalMemory = r.totalMemory(); - long usedMemory = totalMemory - freeMemory; - - logger.info("HeapMax: " + maxHeap + ", CrtHeap: " + totalMemory + ", UsedHeap: " + usedMemory); - } } if (shuttingDown) { logger.info("Service shutting down. Exiting planning loop."); From swift at ci.uchicago.edu Thu Jan 23 00:20:05 2014 From: swift at ci.uchicago.edu (swift at ci.uchicago.edu) Date: Thu, 23 Jan 2014 00:20:05 -0600 (CST) Subject: [Swift-commit] cog r3865 Message-ID: <20140123062006.4DA108D000A6@bridled.ci.uchicago.edu> ------------------------------------------------------------------------ r3865 | hategan | 2014-01-23 00:17:02 -0600 (Thu, 23 Jan 2014) | 1 line (potentially) fixed generation of autoCA proxies for long-running JVM instances ------------------------------------------------------------------------ Index: modules/provider-coaster/src/org/globus/cog/abstraction/impl/execution/coaster/ServiceManager.java =================================================================== --- modules/provider-coaster/src/org/globus/cog/abstraction/impl/execution/coaster/ServiceManager.java (revision 3864) +++ modules/provider-coaster/src/org/globus/cog/abstraction/impl/execution/coaster/ServiceManager.java (working copy) @@ -83,6 +83,8 @@ public static final boolean LOCALJVM = false; public static final boolean LOCALJVM_WHEN_LOCAL = true; + + private static boolean useAutoCA; private BootstrapService bootstrapService; private LocalService localService; @@ -227,8 +229,8 @@ } } - private void setupGSIProxy() throws IOException, GeneralSecurityException { - if (!checkStandardProxy()) { + private static synchronized void setupGSIProxy() throws IOException, GeneralSecurityException { + if (!checkStandardProxy() || useAutoCA) { /* * only do the automatic CA if a standard proxy file does not exist * to allow using things like GridFTP from the coaster service through @@ -238,13 +240,19 @@ AutoCA.Info result = AutoCA.getInstance().createProxy(); System.setProperty("X509_USER_PROXY", result.proxyPath); System.setProperty("X509_CERT_DIR", result.caCertPath); + /* + * Need to set this since subsequent checks for the standard + * proxy will find a proxy from the AutoCA effectively preventing + * new AutoCA proxies from being generated if needed + */ + useAutoCA = true; } else { logger.info("Standard proxy file found. Disabling AutoCA."); } } - private boolean checkStandardProxy() { + private static boolean checkStandardProxy() { File proxy = new File(CoGProperties.getDefault().getProxyFile()); return proxy.exists(); } From davidk at ci.uchicago.edu Thu Jan 23 22:15:04 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Thu, 23 Jan 2014 22:15:04 -0600 (CST) Subject: [Swift-commit] r7504 - branches/release-0.95/bin Message-ID: <20140124041504.7E45C9CF9F@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-23 22:15:04 -0600 (Thu, 23 Jan 2014) New Revision: 7504 Modified: branches/release-0.95/bin/swiftrun Log: Move check for -version Modified: branches/release-0.95/bin/swiftrun =================================================================== --- branches/release-0.95/bin/swiftrun 2014-01-23 03:17:26 UTC (rev 7503) +++ branches/release-0.95/bin/swiftrun 2014-01-24 04:15:04 UTC (rev 7504) @@ -376,6 +376,15 @@ 'version' => \$option_version, ); +# If -version or -help is specified, pass and exit +if ( $option_help ) { + print "-help\n"; + exit; +} elsif ( $option_version ) { + print "-version\n"; + exit; +} + # Create/increment run directory my $run_number = 0; my @run_directories = ; @@ -453,15 +462,6 @@ exit; } -# If -version or -help is specified, pass and exit -if ( $option_help ) { - print "-help\n"; - exit; -} elsif ( $option_version ) { - print "-version\n"; - exit; -} - @new_swift_args = ("-Dscript.dir=$run_directory/scripts"); push(@new_swift_args, "-Drestart.log.name=$run_directory/restart.log"); push(@new_swift_args, "-swiftoutlog=$run_directory/swift.out"); From davidk at ci.uchicago.edu Thu Jan 23 22:16:01 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Thu, 23 Jan 2014 22:16:01 -0600 (CST) Subject: [Swift-commit] r7505 - trunk/bin Message-ID: <20140124041601.F020A9CF9F@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-23 22:16:01 -0600 (Thu, 23 Jan 2014) New Revision: 7505 Modified: trunk/bin/swiftrun Log: Move -version check Modified: trunk/bin/swiftrun =================================================================== --- trunk/bin/swiftrun 2014-01-24 04:15:04 UTC (rev 7504) +++ trunk/bin/swiftrun 2014-01-24 04:16:01 UTC (rev 7505) @@ -376,6 +376,15 @@ 'version' => \$option_version, ); +# If -version or -help is specified, pass and exit +if ( $option_help ) { + print "-help\n"; + exit; +} elsif ( $option_version ) { + print "-version\n"; + exit; +} + # Create/increment run directory my $run_number = 0; my @run_directories = ; @@ -453,15 +462,6 @@ exit; } -# If -version or -help is specified, pass and exit -if ( $option_help ) { - print "-help\n"; - exit; -} elsif ( $option_version ) { - print "-version\n"; - exit; -} - @new_swift_args = ("-Dscript.dir=$run_directory/scripts"); push(@new_swift_args, "-Drestart.log.name=$run_directory/restart.log"); push(@new_swift_args, "-swiftoutlog=$run_directory/swift.out"); From ketan at ci.uchicago.edu Fri Jan 24 10:25:56 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Fri, 24 Jan 2014 10:25:56 -0600 (CST) Subject: [Swift-commit] r7506 - in SwiftApps: . swift-galaxy Message-ID: <20140124162556.13D99178884@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-24 10:25:55 -0600 (Fri, 24 Jan 2014) New Revision: 7506 Added: SwiftApps/swift-galaxy/ SwiftApps/swift-galaxy/tool_conf.xml Log: swift galaxy Added: SwiftApps/swift-galaxy/tool_conf.xml =================================================================== --- SwiftApps/swift-galaxy/tool_conf.xml (rev 0) +++ SwiftApps/swift-galaxy/tool_conf.xml 2014-01-24 16:25:55 UTC (rev 7506) @@ -0,0 +1,17 @@ + + + + + +
+ + + + + + + +
+ From davidk at ci.uchicago.edu Wed Jan 8 16:04:51 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 08 Jan 2014 22:04:51 -0000 Subject: [Swift-commit] r7462 - trunk/docs/userguide Message-ID: <20140108220451.254789CFD2@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-08 16:04:50 -0600 (Wed, 08 Jan 2014) New Revision: 7462 Added: trunk/docs/userguide/configuration trunk/docs/userguide/debugging trunk/docs/userguide/gettingStarted Removed: trunk/docs/userguide/app_procedures trunk/docs/userguide/build_options trunk/docs/userguide/clustering trunk/docs/userguide/commands trunk/docs/userguide/configuration_properties trunk/docs/userguide/howto_tips trunk/docs/userguide/kickstart trunk/docs/userguide/log-processing trunk/docs/userguide/mappers trunk/docs/userguide/reliability_mechanisms trunk/docs/userguide/site_catalog trunk/docs/userguide/transformation_catalog Modified: trunk/docs/userguide/language trunk/docs/userguide/overview trunk/docs/userguide/userguide.txt Log: Updated userguide Deleted: trunk/docs/userguide/app_procedures =================================================================== --- trunk/docs/userguide/app_procedures 2014-01-08 21:57:59 UTC (rev 7461) +++ trunk/docs/userguide/app_procedures 2014-01-08 22:04:50 UTC (rev 7462) @@ -1,568 +0,0 @@ -Executing app procedures ------------------------- -This section describes how Swift executes app procedures, and -requirements on the behaviour of application programs used in app -procedures. These requirements are primarily to ensure that the Swift -can run your application in different places and with the various fault -tolerance mechanisms in place. - - -Mapping of app semantics into unix process execution semantics -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - -This section describes how an app procedure invocation is translated -into a (remote) unix process execution. It does not describe the -mechanisms by which Swift performs that translation; that is described -in the next section. - -In this section, this example Swift script is used for reference: - ----- -type file; - -app (file o) count(file i) { - wc @i stdout=@o; -} - -file q <"input.txt">; -file r <"output.txt">; ----- - -The executable for wc will be looked up in tc.data. - -This unix executable will then be executed in some application -procedure workspace. This means: - -Each application procedure workspace will have an application workspace -directory. (TODO: can collapse terms application procedure workspace -and application workspace directory ? - -This application workspace directory will not be shared with any other -application procedure execution attempt; all application procedure -execution attempts will run with distinct application procedure -workspaces. (for the avoidance of doubt: If a Swift script procedure -invocation is subject to multiple application procedure execution -attempts (due to Swift-level restarts, retries or replication) then each -of those application procedure execution attempts will be made in a -different application procedure workspace. ) - -The application workspace directory will be a directory on a POSIX -filesystem accessible throughout the application execution by the -application executable. - -Before the application executable is executed: - - * The application workspace directory will exist. - - * The input files will exist inside the application workspace - directory (but not necessarily as direct children; there may be - subdirectories within the application workspace directory). - - * The input files will be those files mapped to input parameters - of the application procedure invocation. (In the example, this - means that the file input.txt will exist in the application - workspace directory) - - * For each input file dataset, it will be the case that @filename - or @filenames invoked with that dataset as a parameter will - return the path relative to the application workspace directory - for the file(s) that are associated with that dataset. (In the - example, that means that @i will evaluate to the path input.txt) - - * For each file-bound parameter of the Swift procedure invocation, - the associated files (determined by data type?) will always exist. - - * The input files must be treated as read only files. This may or - may not be enforced by unix file system permissions. They may or - may not be copies of the source file (conversely, they may be - links to the actual source file). - -During/after the application executable execution, the following must -be true: - - * If the application executable execution was successful (in the - opinion of the application executable), then the application - executable should exit with unix return code 0; if the - application executable execution was unsuccessful (in the opinion - of the application executable), then the application executable - should exit with unix return code not equal to 0. - - * Each file mapped from an output parameter of the Swift script - procedure call must exist. Files will be mapped in the same way as - for input files. - - * The output subdirectories will be precreated - before execution by Swift if defined within a Swift script such as the - location attribute of a mapper. App executables expect to make them if - they are referred to in the wrapper scripts. - - * Output produced by running the application executable on some - inputs should be the same no matter how many times, when or where - that application executable is run. 'The same' can vary depending - on application (for example, in an application it might be - acceptable for a PNG->JPEG conversion to produce different, - similar looking, output jpegs depending on the environment) - -Things to not assume: - - * Anything about the path of the application workspace directory - - * That either the application workspace directory will be deleted or - will continue to exist or will remain unmodified after execution - has finished - - * That files can be passed between application procedure - invocations through any mechanism except through files known to - Swift through the mapping mechanism (there is some exception here - for external datasets - there are a separate set of assertions - that hold for external datasets) - - * That application executables will run on any particular site of - those available, or than any combination of applications will run - on the same or different sites. - - -How Swift implements the site execution model -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -This section describes the implementation of the semantics described in -the previous section. - -Swift executes application procedures on one or more sites. - -Each site consists of: - - * worker nodes. There is some execution mechanism through which - the Swift client side executable can execute its wrapper script - on those worker nodes. This is commonly GRAM or Falkon or coasters. - - * a site-shared file system. This site shared filesystem is - accessible through some file transfer mechanism from the Swift - client side executable. This is commonly GridFTP or coasters. This - site shared filesystem is also accessible through the posix file - system on all worker nodes, mounted at the same location as seen - through the file transfer mechanism. Swift is configured with the - location of some site working directory on that site-shared file - system. - -There is no assumption that the site shared file system for one site is -accessible from another site. - -For each workflow run, on each site that is used by that run, a run -directory is created in the site working directory, by the Swift client -side. - -In that run directory are placed several subdirectories: - - * shared/ - site shared files cache - - * kickstart/ - when kickstart is used, kickstart record files for - each job that has generated a kickstart record. - - * info/ - wrapper script log files - - * status/ - job status files - - * jobs/ - application workspace directories (optionally placed - here - see below) - -Application execution looks like this: - -For each application procedure call: - -The Swift client side selects a site; copies the input files for that -procedure call to the site shared file cache if they are not already in -the cache, using the file transfer mechanism; and then invokes the -wrapper script on that site using the execution mechanism. - -The wrapper script creates the application workspace directory; places -the input files for that job into the application workspace directory -using either cp or ln -s (depending on a configuration option); -executes the application unix executable; copies output files from the -application workspace directory to the site shared directory using cp; -creates a status file under the status/ directory; and exits, -returning control to the Swift client side. Logs created during the -execution of the wrapper script are stored under the info/ directory. - -The Swift client side then checks for the presence of and deletes a -status file indicating success; and copies files from the site shared -directory to the appropriate client side location. - -The job directory is created (in the default mode) under the jobs/ -directory. However, it can be created under an arbitrary other path, -which allows it to be created on a different file system (such as a -worker node local file system in the case that the worker node has a -local file system). - -image:swift-site-model.png[] - -Technical overview of the Swift architecture --------------------------------------------- -This section attempts to provide a technical overview of the Swift -architecture. - -Execution layer -~~~~~~~~~~~~~~~ -The execution layer causes an application program (in the form of a unix -executable) to be executed either locally or remotely. - -The two main choices are local unix execution and execution through -GRAM. Other options are available, and user provided code can also be -plugged in. - -The kickstart utility can be used to capture environmental -information at execution time to aid in debugging and provenance capture. - - -Swift script language compilation layer -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -Step i: text to XML intermediate form parser/processor. parser written -in ANTLR - see resources/VDL.g. The XML Schema Definition (XSD) for the -intermediate language is in resources/XDTM.xsd. - -Step ii: XML intermediate form to Karajan workflow. Karajan.java - reads -the XML intermediate form. compiles to karajan workflow language - for -example, expressions are converted from Swift script syntax into Karajan -syntax, and function invocations become karajan function invocations -with various modifications to parameters to accomodate return parameters -and dataset handling. - - -Swift/karajan library layer -~~~~~~~~~~~~~~~~~~~~~~~~~~~ -Some Swift functionality is provided in the form of Karajan libraries -that are used at runtime by the Karajan workflows that the Swift -compiler generates. - - -Ways in which Swift can be extended ------------------------------------ -Swift is extensible in a number of ways. It is possible to add mappers -to accomodate different filesystem arrangements, site selectors to -change how Swift decides where to run each job, and job submission -interfaces to submit jobs through different mechanisms. - -A number of mappers are provided as part of the Swift release and -documented in the mappers section. New mappers can be -implemented in Java by implementing the org.griphyn.vdl.mapping.Mapper -interface. The Swift tutorial - contains a simple -example of this. - -Swift provides a default site selector, the Adaptive Scheduler. New site -selectors can be plugged in by implementing the -org.globus.cog.karajan.scheduler.Scheduler interface and modifying -libexec/scheduler.xml and etc/karajan.properties to refer to the new -scheduler. - -Execution providers and filesystem providers, which allow to Swift to -execute jobs and to stage files in and out through mechanisms such as -GRAM and GridFTP can be implemented as Java CoG kit providers. - - -Function reference ------------------- -This section details functions that are available for use in the -Swift scripting language. - - at arg -~~~~ -Takes a command line parameter name as a string parameter and an -optional default value and returns the value of that string parameter -from the command line. If no default value is specified and the command -line parameter is missing, an error is generated. If a default value is -specified and the command line parameter is missing, @arg will return -the default value. - -Command line parameters recognized by @arg begin with exactly one -hyphen and need to be positioned after the script name. - -For example: - ----- -trace(@arg("myparam")); -trace(@arg("optionalparam", "defaultvalue")); ----- - ----- -$ swift arg.swift -myparam=hello -Swift v0.3-dev r1674 (modified locally) - -RunID: 20080220-1548-ylc4pmda -Swift trace: defaultvalue -Swift trace: hello ----- - - at extractInt -~~~~~~~~~~~ - at extractInt(file) will read the specified file, parse an integer from -the file contents and return that integer. - - at extractFloat -~~~~~~~~~~~~~ -Similar to @extractInt, @extractFloat(file) will read the specified file, parse a float from -the file contents and return that float. - - at filename -~~~~~~~~~ - at filename(v) will return a string containing the filename(s) for the -file(s) mapped to the variable v. When more than one filename is -returned, the filenames will be space separated inside a single string -return value. - - - at filenames -~~~~~~~~~~ - at filenames(v) will return multiple values (!) containing the -filename(s) for the file(s) mapped to the variable v. (compare to - at filename) - - at regexp -~~~~~~~ - at regexp(input,pattern,replacement) will apply regular expression -substitution using the Java java.util.regexp API -. -For example: - ----- -string v = @regexp("abcdefghi", "c(def)g","monkey"); ----- - -will assign the value "abmonkeyhi" to the variable v. - - at sprintf -~~~~~~~~ - at sprintf(spec, variable list) will generate a string based on the specified format. ------ -Example: string s = @sprintf("\t%s\n", "hello"); ------ - -Format specifiers -[width="100%",frame="topbot"] -|====================== -|%%| % sign -|%M| Filename output (waits for close) -|%p| Format variable according to an internal format -|%b| Boolean output -|%f| Float output -|%i| int output -|%s| String output -|%k| Variable sKipped, no output -|%q| Array output -|====================== - - at strcat -~~~~~~~ - at strcat(a,b,c,d,...) will return a string containing all of the -strings passed as parameters joined into a single string. There may be -any number of parameters. - -The + operator concatenates two strings: @strcat(a,b) is the same as -a + b - - at strcut -~~~~~~~ - at strcut(input,pattern) will match the regular expression in the -pattern parameter against the supplied input string and return the -section that matches the first matching parenthesised group. - -For example: ----- -string t = "my name is John and i like puppies."; -string name = @strcut(t, "my name is ([^ ]*) "); -string out = @strcat("Your name is ",name); -trace(out); ----- - -This will output the message: Your name is John. - - at strjoin -~~~~~~~~ - at strjoin(array, delimiter) will combine the elements of an array -into a single string separated by a given delimiter. The array -passed to @strjoin must be of a primitive type (string, int, float, -or boolean). It will not join the contents of an array of files. - -Example: ----- -string test[] = ["this", "is", "a", "test" ]; -string mystring = @strjoin(test, " "); -tracef("%s\n", mystring); ----- - -This will print the string "this is a test". - - at strsplit -~~~~~~~~~ - at strsplit(input,pattern) will split the input string based on -separators that match the given pattern and return a string array. - -Example: ----- -string t = "my name is John and i like puppies."; -string words[] = @strsplit(t, "\\s"); -foreach word in words { - trace(word); -} ----- - -This will output one word of the sentence on each line (though not -necessarily in order, due to the fact that foreach iterations execute in -parallel). - - - at toInt -~~~~~~ - at toInt(input) will parse its input string into an integer. This can be -used with @arg to pass input parameters to a Swift script as -integers. - - at toFloat -~~~~~~~~ - at toFloat(input) will parse its input string into a floating point number. This can be -used with @arg to pass input parameters to a Swift script as -floating point numbers. - - at toString -~~~~~~~~~ - at toString(input) will parse its input into a string. Input can be an int, float, string, -or boolean. - - at length -~~~~~~ - at length(array) will return the length of an array in Swift. This function will wait for all elements in the array to be written before returning the length. - - at java -~~~~~~ - at java(class_name, static_method, method_arg) will call a java static method of the class class_name. - -Built-in procedure reference ----------------------------- -This section details built-in procedures that are available for use in -the Swift scripting language. - -readData -~~~~~~~~ -readData will read data from a specified file and assign it to Swift variable. The format of the input file is -controlled by the type of the return value. For scalar return types, such as -int, the specified file should contain a single value of that type. For arrays -of scalars, the specified file should contain one value per line. For complex types -of scalars, the file should contain two rows. The first row should be structure -member names separated by whitespace. The second row should be the -corresponding values for each structure member, separated by whitespace, in the -same order as the header row. For arrays of structs, the file should contain a -heading row listing structure member names separated by whitespace. There -should be one row for each element of the array, with structure member elements -listed in the same order as the header row and separated by whitespace. The following example shows how readData() can be used to populate an array of Swift struct-like complex type: - ----- -type Employee{ - string name; - int id; - string loc; -} - -Employee emps[] = readData("emps.txt"); ----- - -Where the contents of the "emps.txt" file are: - ----- -name id loc -Thomas 2222 Chicago -Gina 3333 Boston -Anne 4444 Houston ----- - -This will result in the array "emps" with 3 members. This can be processed within a Swift script using the foreach construct as follows: - ----- -foreach emp in emps{ - tracef("Employee %s lives in %s and has id %d", emp.name, emp.loc, emp.id); -} ----- - - -readStructured -~~~~~~~~~~~~~~ -readStructured will read data from a specified file, like readdata, but -using a different file format more closely related to that used by the -ext mapper. - -Input files should list, one per line, a path into a Swift structure, -and the value for that position in the structure: - ----- -rows[0].columns[0] = 0 -rows[0].columns[1] = 2 -rows[0].columns[2] = 4 -rows[1].columns[0] = 1 -rows[1].columns[1] = 3 -rows[1].columns[2] = 5 ----- - -which can be read into a structure defined like this: - ----- -type vector { - int columns[]; -} - -type matrix { - vector rows[]; -} - -matrix m; - -m = readStructured("readStructured.in"); ----- - -(since Swift 0.7, was readData2(deprecated)) - -trace -~~~~~ -trace will log its parameters. By default these will appear on both -stdout and in the run log file. Some formatting occurs to produce the -log message. The particular output format should not be relied upon. - -tracef -~~~~~~ - -+tracef(_spec_, _variable list_)+ will log its parameters as formatted -by the formatter _spec_. _spec_ must be a string. Checks the type of -the specifiers arguments against the variable list and allows for -certain escape characters. - -Example: ----- -int i = 3; -tracef("%s: %i\n", "the value is", i); ----- - -Specifiers: - -+%s+:: Format a string. -+%b+:: Format a boolean. -+%i+:: Format a number as an integer. -+%f+:: Format a number as a floating point number. -+%q+:: Format an array. -+%M+:: Format a mapped variable's filename. -+%k+:: Wait for the given variable but do not format it. -+%p+:: Format variable according to an internal format. - -Escape sequences: - -+\n+:: Produce a newline. -+\t+:: Produce a tab. - -Known issues: :: Swift does not correctly scan certain backslash -sequences such as +\\+. - -writeData -~~~~~~~~~ -writeData will write out data structures in the format described for -readData. The following example demonstrates how one can write a string "foo" into a file "writeDataPrimitive.out": - ----- -include::../../tests/language-behaviour/IO/writeDataPrimitive.swift[] ----- - Deleted: trunk/docs/userguide/build_options =================================================================== --- trunk/docs/userguide/build_options 2014-01-08 21:57:59 UTC (rev 7461) +++ trunk/docs/userguide/build_options 2014-01-08 22:04:50 UTC (rev 7462) @@ -1,24 +0,0 @@ -Build options -------------- -See the Swift download page for -instructions on downloading and building Swift from source. When building, -various build options can be supplied on the ant commandline. These are -summarised here: - -with-provider-condor - build with CoG condor provider - -with-provider-coaster - build with CoG coaster provider (see the section on -coasters). Since 0.8, coasters are always built, and this option has no effect. - -no-supporting - produces a distribution without supporting commands such as -grid-proxy-init. This is intended for when the Swift distribution will be used -in an environment where those commands are already provided by other packages, -where the Swift package should be providing only Swift commands, and where the -presence of commands such as grid-proxy-init from the Swift distribution in the -path will mask the presence of those commands from their true distribution -package such as a Globus Toolkit package. - ----- -$ ant -Dno-supporting=true redist ----- - Deleted: trunk/docs/userguide/clustering =================================================================== --- trunk/docs/userguide/clustering 2014-01-08 21:57:59 UTC (rev 7461) +++ trunk/docs/userguide/clustering 2014-01-08 22:04:50 UTC (rev 7462) @@ -1,24 +0,0 @@ -Clustering ----------- -Swift can group a number of short job submissions into a single larger job -submission to minimize overhead involved in launching jobs (for example, caused -by security negotiation and queuing delay). In general, coasters should be used -in preference to the clustering mechanism documented in this section. - -By default, clustering is disabled. It can be activated by setting the -clustering.enabled property to true. - -A job is eligible for clustering if the GLOBUS::maxwalltime profile is -specified in the tc.data entry for that job, and its value is less than the -value of the clustering.min.time property. - -Two or more jobs are considered compatible if they share the same site and do -not have conflicting profiles (e.g. different values for the same environment -variable). - -When a submitted job is eligible for clustering, it will be put in a clustering -queue rather than being submitted to a remote site. The queue is processed at -intervals specified by the clustering.queue.delay property. The processing of -the clustering queue consists of selecting compatible jobs and grouping them -into clusters whose maximum wall time does not exceed twice the value of the -clustering.min.time property. Deleted: trunk/docs/userguide/commands =================================================================== --- trunk/docs/userguide/commands 2014-01-08 21:57:59 UTC (rev 7461) +++ trunk/docs/userguide/commands 2014-01-08 22:04:50 UTC (rev 7462) @@ -1,213 +0,0 @@ -Commands --------- -The commands detailed in this section are available in the bin/ -directory of a Swift installation and can by run from the commandline if -that directory is placed on the PATH. - - -swift -~~~~~ -The swift command is the main command line tool for executing -Swift scripts. - - -Command-line Syntax -^^^^^^^^^^^^^^^^^^^ -The swift command is invoked as follows: swift [options] -Swifti script [Swift-arguments]* with options taken from the -following list, and Swift script arguments made available to the -Swift script through the @arg function. - -Swift command-line options - --help or -h - - Display usage information - --typecheck - - Does a typecheck of a Swift script, instead of executing it. - --dryrun - - Runs the Swift script without submitting any jobs. This can be - used to obtain an execution graph in conjunction with the +pgraph+ - options below. - --monitor - - Shows a graphical resource monitor - --resume file - - Resumes the execution using a resume-log file .rlog - --config file - - Indicates the Swift configuration file to be used for this run. - Properties in this configuration file will override the default - properties. If individual command line arguments are used for - properties, they will override the contents of this file. - --verbose | -v - - Increases the level of output that Swift produces on the console to - include more detail about the execution - --debug | -d - - Increases the level of output that Swift produces on the console to - include lots of detail about the execution - --logfile file - - Specifies a file where log messages should go to. By default Swift - uses the name of the program being run and a numeric index (e.g. - myworkflow.1.log) - --runid identifier - - Specifies the run identifier. This must be unique for every - invocation and is used in several places to keep files from - different executions cleanly separated. By default, a datestamp and - random number are used to generate a run identifier. When using this - parameter, care should be taken to ensure that the run ID remains - unique with respect to all other run IDs that might be used, - irrespective of (at least) expected execution sites, program or user. - --version - - Display Swift version and exit - --recompile - - Forces Swift to re-compile the invoked Swift script. While Swift - is meant to detect when recompilation is necessary, in some - special cases it fails to do so. This flag helps with those - special cases. - --cdm.file - - Specifies a CDM policy file. - --reduced.logging - - Makes logging more terse by disabling provenance information and - low-level task messages - --minimal.logging - - Makes logging much more terse: reports warnings only - --tui - - Displays an interactive text mode monitor during a run. (since Swift - 0.9) - -In addition, the following Swift properties can be set on the command line: - - * caching.algorithm - * clustering.enabled - * clustering.min.time - * clustering.queue.delay - * ip.address - * kickstart.always.transfer - * kickstart.enabled - * lazy.errors - * pgraph - * pgraph.graph.options - * pgraph.node.options - * sitedir.keep - * sites.file - * tc.file - * tcp.port.range - - -Return codes -^^^^^^^^^^^^ - -The swift command may exit with the following return codes: - -[options="header, autowidth"] -|========= -|value|meaning -|0|success -|1|command line syntax error or missing project name -|2|error during execution -|3|error during compilation -|4|input file does not exist -|=========== - -Environment variables -^^^^^^^^^^^^^^^^^^^^^ - -The swift is influenced by the following environment variables: - -GLOBUS_HOSTNAME, GLOBUS_TCP_PORT_RANGE - - Set in the environment before running Swift. These can be set to inform Swift - of the configuration of your local firewall. More information can be found in - the Globus firewall How-to . - -SWIFT_HEAP_MAX - - Sets the java heap size. Use this if Swift runs out of memory. - Uses the format set by java -Xmx, which is how this is implemented. - The default setting is 1024M. - -COG_OPTS - - Set in the environment before running Swift. Options set in - this variable will be passed as parameters to the Java Virtual Machine - which will run Swift. The parameters vary between virtual machine - imlementations, but can usually be used to alter settings such as - maximum heap size. Typing 'java -help' will sometimes give a list of - commands. - - -swift-osg-ress-site-catalog -~~~~~~~~~~~~~~~~~~~~~~~~~~~ -The swift-osg-ress-site-catalog command generates a site catalog based -on OSG 's ReSS information system -(since Swift 0.9) - -Usage: *swift-osg-ress-site-catalog [options]* - ---help - - Show help message - ---vo=[name] - - Set what VO to query ReSS for - ---engage-verified - - Only retrieve sites verified by the Engagement VO site verification - tests This can not be used together with |--vo|, as the query will - only work for sites advertising support for the Engagement VO. - - This option means information will be retrieved from the Engagement - collector instead of the top-level ReSS collector. - ---out=[filename] - - Write to [filename] instead of stdout - ---condor-g - - Generates sites files which will submit jobs using a local Condor-G - installation rather than through direct GRAM2 submission. (since - Swift 0.10) - - -swift-plot-log -~~~~~~~~~~~~~~ -swift-plot-log generates summaries of Swift run log files. - -Usage: swift-plot-log [logfile] [targets] - -When no targets are specified, swift-plog-log will generate an HTML -report for the run. When targets are specified, only those named targets -will be generated. - Added: trunk/docs/userguide/configuration =================================================================== --- trunk/docs/userguide/configuration (rev 0) +++ trunk/docs/userguide/configuration 2014-01-08 22:04:50 UTC (rev 7462) @@ -0,0 +1,513 @@ +Configuration +------------- +Swift uses a single configuration file called swift.properties. The swift.properties +file is responsible for: + +1. Defining how to interface with schedulers +2. Defining app names and locations +3. Defining various other swift settings and behavior + +Here is an example swift.properties file. + +----- +# Define a site named sandyb +site.sandyb { + tasksPerWorker=16 + taskWalltime=00:05:00 + jobManager=slurm + jobQueue=sandyb + maxJobs=1 + workdir=/scratch/midway/$USER/work + filesystem=local +} + +# Define sandyb apps +app.sandyb.echo=/bin/echo + +# Define other swift properties +sitedir.keep=true +wrapperlog.always.transfer=true + +# Select which site to run on +site=sandyb +----- + +The details of this file will be explained more later. Let's first look +at an example of running Swift with this new file. + +Using the swift.properties file above, the new Swift command a user would run +is: + +----- +$ swift script.swift +----- + +That is all that is needed. Everything Swift needs to know is defined in +swift.properties. + +Location of swift.properties +~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +Swift searches for swift.properties files in multiple locations: + +1. The etc/swift.properties file included with the Swift distribution. +2. $SWIFT_SITE_CONF/swift.properties - used for defining site templates. +3. $HOME/.swift/swift.properties +4. swift.properties in your current directory. +5. Any property file you point to with the command line argument "-properties +" + +Settings get read in this order. Definitions in the later files will override +any previous definitions. For example, if you have execution.retries=10 in +$HOME/.swift/swift.properties, and execution.retries=0 in the swift.properties +in your current directory, execution.retries will be set to 0. + +To verify what files are being read, and what values will be set, run: +----- +$ swift -listconfig +----- + +Selecting a site +~~~~~~~~~~~~~~~~ +There are two ways Swift knows where to run. The first is via +swift.properties. The site command specified which site entries +should be used for a particular run. + +----- +site=sandyb +----- + +Sites can also be selected on the command line by using the -site option. + +----- +$ swift -site westmere script.swift +----- + +The -site command line argument will override any sites selected in +swift.properties. + +Selecting multiple sites +~~~~~~~~~~~~~~~~~~~~~~~~ +To use multiple sites, use a list of site names separated by commas. In +swift.properties: + +----- +site=westmere,sandyb +----- + +The same format can be used on the command line: + +----- +$ swift -site westmere,sandyb script.swift +----- + +NOTE: You can also use "sites=" in swift.properties, and "-sites x,y,z" on the +command line. + +Run directories +~~~~~~~~~~~~~~~ +When you run Swift, you will see a run directory get created. The run +directory has the name of runNNN, where NNN starts at 000 and increments for +every run. + +The run directories can be useful for debugging. They contain: +.Run directory contents +|====================== +|apps |An apps generated from swift.properties +|cf |A configuration file generated from swift.properties +|runNNN.log|The log file generated during the Swift run +|scriptname-runNNN.d|Debug directory containing wrapper logs +|scripts|Directory that contains scheduler scripts used for that run +|sites.xml|A sites.xml generated from swift.properties +|swift.out|The standard out and standard error generated by Swift +|====================== + +Using site templates +~~~~~~~~~~~~~~~~~~~~ +This new configuration mechanism should make it easier to use site templates. +To use this, set the environment variable $SWIFT_SITE_CONF to a directory +containing a swift.properties file. This swift.properties can contain multiple +site definitions for the various queues available on the cluster you are using. + +Your local swift.properties then does not need to define the entire site. It +may contain only differences you need to make that are specific to your +application, like walltime. + +Backward compatability +~~~~~~~~~~~~~~~~~~~~~~~ +New users are encouraged to use the configuration mechanisms described in this documentation. +However, if you are migrating from an older Swift release to 0.95, the older-style configurations +using sites.xml and tc.data should still work. If you notice an instance where this is not true, +please send an email to swift-support at ci.uchicago.edu. + +The swift.properties file format +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + +Site definitions +^^^^^^^^^^^^^^^^ +Site definitions in the swift.properties files begin with "site". +The second word is the name of the site you are defining. In these examples we +will define a site called westmere. +The third word is the property. + +For example: +----- +site.westmere.jobQueue=fast +----- + +Before the site properties are listed, it's important to understand the +terminology used. + +A *task*, or *app task* is an instance of a program as defined in +a Swift app() function. + +A *worker* is the program that launches app tasks. + +A *job* is related to schedulers. It is the mechanism by which workers +are launched. + +Below is the list of valid site properties with brief explanations of what +they do, and an example swift.properties entry. + +.swift.properties site properties +[options="header"] +|================================ +|Property|Description|Example + +|filesystem| +Defines how files should be accessed +|site.westmere.filesystem=local + +|jobGranularity| +Specifies the granularity of a job, in nodes +|site.westmere.jobGranularity=2 + +|jobManager| +Specifies how jobs will be launched. The supported job managers are +"cobalt", "slurm", "condor", "pbs", "lsf", "local", and "sge". +|site.westmere.jobManager=slurm + +|jobProject| +Set the project name for the job scheduler +|site.westmere.project=myproject + +|jobQueue| +Set the name of the scheduler queue to use. +|site.westmere.jobQueue=westmere + +|jobWalltime| +The maximum number amount of time allocated in a scheduler job, in hh:mm:ss +format. +|site.westmere.jobWalltime=01:00:00 + +|maxJobs| +Maximum number of scheduler jobs to submit +|site.westmere.maxJobs=20 + +|maxNodesPerJob| +The maximum number of nodes to request per scheduler job. +|site.westmere.maxNodesPerJob=2 + +|taskDir| +Tasks will be run from this directory. In the absence of a taskDir definition, +Swift will run the task from workdir. +|site.westmere.taskDir=/scratch/local/$USER/work + +|tasksPerWorker| +The number of tasks that each worker can run simultaneously. +|site.westmere.tasksPernode=12 + +|taskThrottle| +The maximum number of active tasks across all workers. +|site.westmere.taskThrottle=100 + +|taskWalltime| +The maximum amount of time a task may run, in hh:mm:ss. +|site.westmere.taskWalltime=01:00:00 + +|site | +Name of site or sites to run on. This is the same as running with +swift -site +|site=westmere + +|workdir | +The workdirectory element specifies where on the site files can be stored. +This directory must be available on all worker nodes that will be used for +execution. A shared cluster filesystem is appropriate for this. Note that +you need to specify absolute pathname for this field. +|site.westmere.workdir=/scratch/midway/$USER/work + +|================================ + +Grouping site properties +~~~~~~~~~~~~~~~~~~~~~~~~ +The example swift.properties in this document listed the following site +related properties: + +----- +site.westmere.provider=local:slurm +site.westmere.jobsPerNode=12 +site.westmere.maxWalltime=00:05:00 +site.westmere.queue=westmere +site.westmere.initialScore=10000 +site.westmere.filesystem=local +site.westmere.workdir=/scratch/midway/davidkelly999 +----- + +However, it is also simplify this by grouping these properties together with +curly brackets. + +------ +site.westmere { + provider=local:slurm + jobsPerNode=12 + maxWalltime=00:05:00 + queue=westmere + initialScore=10000 + filesystem=local + workdir=/scratch/midway/$USER/work +} +----- + +App definitions +~~~~~~~~~~~~~~~ +In 0.95, applications wildcards will be used by default. This means that +$PATH will be searched and pathnames to application do not have to be defined. + +In the case where you have multiple sites defined, and you want +control over where things run, you will need to define the location of apps. +In this scenario, you will can define apps in swift.properties with something +like this: + +----- +app.westmere.cat=/bin/cat +----- + +When an app is defined in swift.properties for any site you are running on, +wildcards will be disabled, and all apps you want to use must be defined. + +General Swift properties +~~~~~~~~~~~~~~~~~~~~~~~~ +Various aspects of the behavior of Swift can be configured through general +Swift properties. Below is a list of properties: + +[options="header"] +|================ +|Name|Valid Values|Default Value|Description + +|execution.retries +|Positive integer +|2 +|The number of time a job will be retried if it fails (giving a + maximum of 1 + execution.retries attempts at execution) + +|foreach.max.threads +|Positive integer +|1024 +|Limits the number of concurrent iterations that each foreach + statement can have at one time. This conserves memory for swift + programs that have large numbers of iterations (which would + otherwise all be executed in parallel) + +|lazy.errors +|true, false +|false +|Swift can report application errors in two modes, depending on the + value of this property. If set to false, Swift will report the + first error encountered and immediately stop execution. If set to + true, Swift will attempt to run as much as possible from a + Swift script before stopping execution and reporting all + errors encountered. When developing Swift scripts, using the default value of + false can make the program easier to debug. However in production + runs, using true will allow more of a Swift script to be + run before Swift aborts execution. + +|swift.home +|String +| +|Points to the Swift installation directory ($SWIFT_HOME). In general, this should + not be set as Swift can find its own installation directory, and incorrectly setting it may impair the + correct functionality of Swift. + +|pgraph +|true, false +|false +|Swift can generate a Graphviz file +representing the structure of the Swift script it has run. If +this property is set to true, Swift will save the provenance graph +in a file named by concatenating the program name and the instance +ID (e.g. helloworld-ht0adgi315l61.dot). +If set to false, no provenance graph will be generated. If a file +name is used, then the provenance graph will be saved in the +specified file. +The generated dot file can be rendered into a graphical form using +Graphviz , for example with a command-line +such as: +$ swift -pgraph graph1.dot q1.swift +$ dot -ograph.png -Tpng graph1.dot + +|pgraph.graph.options +|String +|splines="compound", rankdir="TB" +|This property specifies a Graphviz + specific set of parameters for the graph. + +|pgraph.node.options +|String +|color="seagreen", style="filled" +|Used to specify a set of Graphviz specific + properties for the nodes in the graph. + +|provenance.log +|true, false +|false +|This property controls whether the log file will contain provenance + information enabling this will increase the size of log files, + sometimes significantly. + +|sitedir.keep +|true, false +|false +|Indicates whether the working directory on the remote site should be + left intact even when a run completes successfully. This can be used + to inspect the site working directory for debugging purposes. + +|status.mode +|files, provider +|files +|Controls how Swift will communicate the result code of running user + programs from workers to the submit side. In files mode, a file + indicating success or failure will be created on the site shared + filesystem. In provider mode, the execution provider job status + will be used. provider mode requires the underlying job execution system to + correctly return exit codes. + +|tcp.port.range +|none +|, where start and end are integers +|A TCP port range can be specified to restrict the ports on which + GRAM callback services are started. This is likely needed if your + submit host is behind a firewall, in which case the firewall should + be configured to allow incoming connections on ports in the range. + +|throttle.file.operations +|, off +|8 +|Limits the total number of concurrent file operations that can + happen at any given time. File operations (like transfers) require + an exclusive connection to a site. These connections can be + expensive to establish. A large number of concurrent file operations + may cause Swift to attempt to establish many such expensive + connections to various sites. Limiting the number of concurrent file + operations causes Swift to use a small number of cached connections + and achieve better overall performance. + +|throttle.host.submit +|, off +|2 +|Limits the number of concurrent submissions for any of the sites + Swift will try to send jobs to. In other words it guarantees that no + more than the value of this throttle jobs sent to any site will be + concurrently in a state of being submitted. + +|throttle.score.job.factor +|, off +|4 +|The Swift scheduler has the ability to limit the number of +concurrent jobs allowed on a site based on the performance history +of that site. Each site is assigned a score (initially 1), which can +increase or decrease based on whether the site yields successful or +faulty job runs. The score for a site can take values in the (0.1, +100) interval. The number of allowed jobs is calculated using the +following formula: +2 + score*throttle.score.job.factor +This means a site will always be allowed at least two concurrent +jobs and at most 2 + 100*throttle.score.job.factor. With a default +of 4 this means at least 2 jobs and at most 402. +This parameter can also be set per site using the jobThrottle +profile key in a site catalog entry. + +|throttle.submit +|, off +|4 +|Limits the number of concurrent submissions for a run. This throttle + only limits the number of concurrent tasks (jobs) that are being + sent to sites, not the total number of concurrent jobs that can be + run. The submission stage in GRAM is one of the most CPU expensive + stages (due mostly to the mutual authentication and delegation). + Having too many concurrent submissions can overload either or both + the submit host CPU and the remote host/head node causing degraded + performance. + +|throttle.transfers +|, off +|4 +|Limits the total number of concurrent file transfers that can happen + at any given time. File transfers consume bandwidth. Too many + concurrent transfers can cause the network to be overloaded + preventing various other signaling traffic from flowing properly. + +|ticker.disable +|true, false +|false +|When set to true, suppresses the output progress ticker that Swift + sends to the console every few seconds during a run + +|use.wrapper.staging +|true, false +|false +|Determines if the Swift wrapper should do file staging. + +|wrapper.invocation.mode +|absolute, relative +|absolute +|Determines if Swift remote wrappers will be executed by specifying + an absolute path, or a path relative to the job initial working + directory. In most cases, execution will be successful with either + option. However, some execution sites ignore the specified initial + working directory, and so absolute must be used. Conversely on + some sites, job directories appear in a different place on the + worker node file system than on the filesystem access node, with the + execution system handling translation of the job initial working + directory. In such cases, relative mode must be used. + +|wrapper.parameter.mode +|args,files +|args +|Controls how Swift will supply parameters to the remote wrapper + script. args mode will pass parameters on the command line. Some + execution systems do not pass commandline parameters sufficiently + cleanly for Swift to operate correctly. files mode will pass + parameters through an additional input file. This + provides a cleaner communication channel for parameters, at the + expense of transferring an additional file for each job invocation. + +|wrapperlog.always.transfer +|true, false +|false +|This property controls when output from the Swift remote wrapper is + transfered back to the submit site. When set to false, wrapper + logs are only transfered for jobs that fail. If set to true, + wrapper logs are transfered after every job is completed or failed. + +|================ + + +Using shell variables +~~~~~~~~~~~~~~~~~~~~~ +Any value in swift.properties may contain environment variables. For example: + +----- +workdir=/scratch/midway/$USER/work +---- + +Environment variables are expanded locally on the machine where you are running +Swift. + +Swift will also define a variable called $RUNDIRECTORY that is the path to the +run directory Swift creates. In a case where you'd like your work directory +to be in the runNNN directory, you may do something like this: + +----- +workdir=$RUNDIRECTORY +----- + Deleted: trunk/docs/userguide/configuration_properties =================================================================== --- trunk/docs/userguide/configuration_properties 2014-01-08 21:57:59 UTC (rev 7461) +++ trunk/docs/userguide/configuration_properties 2014-01-08 22:04:50 UTC (rev 7462) @@ -1,493 +0,0 @@ -Swift configuration properties ------------------------------- -Various aspects of the behavior of Swift can be configured through properties. -Swift recognizes a global, per installation properties file which can found in -etc/swift.properties in the Swift installation directory and a user properties -file which can be created by each user in ~/.swift/swift.properties. - -Swift will first load the global properties file. It will then try to load the -user properties file. If a user properties file is found, individual properties -explicitly set in that file will override the respective properties in the -global properties file. Furthermore, some of the properties can be overridden -directly using command line arguments to the *swift* command. - -Swift properties are specified in the following format: - -= - -The value can contain variables which will be expanded when the -properties file is read. Expansion is performed when the name of the -variable is used inside the standard shell dereference construct: -${name}. The following variables can be used in the Swift -configuration file: - -Swift Configuration Variables - -swift.home - - Points to the Swift installation directory ($SWIFT_HOME). In - general, this should not be set as Swift can find its own - installation directory, and incorrectly setting it may impair the - correct functionality of Swift. - -user.name - - The name of the current logged in user. - -user.home - - The user's home directory. - -The following is a list of valid Swift properties: - -Swift Properties - -caching.algorithm - - Valid values: LRU - - Default value: LRU - - Swift caches files that are staged in on remote resources, and files - that are produced remotely by applications, such that they can be - re-used if needed without being transfered again. However, the - amount of remote file system space to be used for caching can be - limited using the swift:storagesize profile entry in the sites.xml file. Example: - ----- - - - -/scratch/swift -20000000 - ----- - - The decision of which files to keep in the cache and which files to - remove is made considering the value of the caching.algorithm - property. Currently, the only available value for this property is - LRU, which would cause the least recently used files to be deleted - first. - -clustering.enabled - - Valid values: true, false - - Default value: false - - Enables clustering. - -clustering.min.time - - Valid values: - - Default value: 60 - - Indicates the threshold wall time for clustering, in seconds. Jobs - that have a wall time smaller than the value of this property will - be considered for clustering. - -clustering.queue.delay - - Valid values: - - Default value: 4 - - This property indicates the interval, in seconds, at which the - clustering queue is processed. - -execution.retries - - Valid values: positive integers - - Default value: 2 - - The number of time a job will be retried if it fails (giving a - maximum of 1 + execution.retries attempts at execution) - -foreach.max.threads - - Valid values: positive integers - - Default value: 1024 - - Limits the number of concurrent iterations that each foreach - statement can have at one time. This conserves memory for swift - programs that have large numbers of iterations (which would - otherwise all be executed in parallel). (since Swift 0.9) - -ip.address - - Valid values: - - Default value: N/A - - The Globus GRAM service uses a callback mechanism to send - notifications about the status of submitted jobs. The callback - mechanism requires that the Swift client be reachable from the hosts - the GRAM services are running on. Normally, Swift can detect the - correct IP address of the client machine. However, in certain cases - (such as the client machine having more than one network interface) - the automatic detection mechanism is not reliable. In such cases, - the IP address of the Swift client machine can be specified using - this property. The value of this property must be a numeric address - without quotes. - - This option is deprecated and the hostname property should be used - instead. - -kickstart.always.transfer - - Valid values: true, false - - Default value: false - - This property controls when output from Kickstart is transfered back - to the submit site, if Kickstart is enabled. When set to false, - Kickstart output is only transfered for jobs that fail. If set to - true, Kickstart output is transfered after every job is completed - or failed. - -kickstart.enabled - - Valid values: true, false, maybe - - Default value: maybe - - This option allows controlling of when Swift uses Kickstart. - A value of false disables the use of Kickstart, - while a value of true enables the use of Kickstart, in which case - sites specified in the sites.xml file must have valid - gridlaunch attributes. The maybe value will enable the use of - Kickstart only on sites that have the gridlaunch attribute - specified. - -lazy.errors - - Valid values: true, false - - Default value: false - - Swift can report application errors in two modes, depending on the - value of this property. If set to false, Swift will report the - first error encountered and immediately stop execution. If set to - true, Swift will attempt to run as much as possible from a - Swift script before stopping execution and reporting all - errors encountered. - - When developing Swift scripts, using the default value of - false can make the program easier to debug. However in production - runs, using true will allow more of a Swift script to be - run before Swift aborts execution. - -pgraph - - Valid values: true, false, - - Default value: false - - Swift can generate a Graphviz file - representing the structure of the Swift script it has run. If - this property is set to true, Swift will save the provenance graph - in a file named by concatenating the program name and the instance - ID (e.g. helloworld-ht0adgi315l61.dot). - - If set to false, no provenance graph will be generated. If a file - name is used, then the provenance graph will be saved in the - specified file. - - The generated dot file can be rendered into a graphical form using - Graphviz , for example with a command-line - such as: - ----- -$ swift -pgraph graph1.dot q1.swift -$ dot -ograph.png -Tpng graph1.dot ----- - -pgraph.graph.options - - Valid values: - - Default value: splines="compound", rankdir="TB" - - This property specifies a Graphviz - specific set of parameters for the graph. - -pgraph.node.options - - Valid values: - - Default value: color="seagreen", style="filled" - - Used to specify a set of Graphviz specific - properties for the nodes in the graph. - -provenance.log - - Valid values: true, false - - Default value: false - - This property controls whether the log file will contain provenance - information enabling this will increase the size of log files, - sometimes significantly. - -replication.enabled - - Valid values: true, false - - Default value: false - - Enables/disables replication. Replication is used to deal with jobs - sitting in batch queues for abnormally large amounts of time. If - replication is enabled and certain conditions are met, Swift creates - and submits replicas of jobs, and allows multiple instances of a job - to compete. - -replication.limit - - Valid values: positive integers - - Default value: 3 - - The maximum number of replicas that Swift should attempt. - -sitedir.keep - - Valid values: true, false - - Default value: false - - Indicates whether the working directory on the remote site should be - left intact even when a run completes successfully. This can be used - to inspect the site working directory for debugging purposes. - -sites.file - - Valid values: - - Default value: ${swift.home}/etc/sites.xml - - Points to the location of the site catalog, which contains a list of - all sites that Swift should use. - -status.mode - - Valid values: files, provider - - Default value: files - - Controls how Swift will communicate the result code of running user - programs from workers to the submit side. In files mode, a file - indicating success or failure will be created on the site shared - filesystem. In provider mode, the execution provider job status - will be used. - - provider mode requires the underlying job execution system to - correctly return exit codes. In at least the cases of GRAM2, and - clusters used with any provider, exit codes are not returned, and so - files mode must be used in those cases. Otherwise, provider mode - can be used to reduce the amount of filesystem access. (since Swift - 0.8) - -tc.file - - Valid values: - - Default value: ${swift.home}/etc/tc.data - - Points to the location of the transformation catalog file which - contains information about installed applications. Details about the - format of the transformation catalog can be found here - . - - -tcp.port.range - - Valid values: , where start and end are integers - - Default value: none - - A TCP port range can be specified to restrict the ports on which - GRAM callback services are started. This is likely needed if your - submit host is behind a firewall, in which case the firewall should - be configured to allow incoming connections on ports in the range. - -throttle.file.operations - - Valid values: , off - - Default value: 8 - - Limits the total number of concurrent file operations that can - happen at any given time. File operations (like transfers) require - an exclusive connection to a site. These connections can be - expensive to establish. A large number of concurrent file operations - may cause Swift to attempt to establish many such expensive - connections to various sites. Limiting the number of concurrent file - operations causes Swift to use a small number of cached connections - and achieve better overall performance. - -throttle.host.submit - - Valid values: , off - - Default value: 2 - - Limits the number of concurrent submissions for any of the sites - Swift will try to send jobs to. In other words it guarantees that no - more than the value of this throttle jobs sent to any site will be - concurrently in a state of being submitted. - -throttle.score.job.factor - - Valid values: , off - - Default value: 4 - - The Swift scheduler has the ability to limit the number of - concurrent jobs allowed on a site based on the performance history - of that site. Each site is assigned a score (initially 1), which can - increase or decrease based on whether the site yields successful or - faulty job runs. The score for a site can take values in the (0.1, - 100) interval. The number of allowed jobs is calculated using the - following formula: - - 2 + score*throttle.score.job.factor - - This means a site will always be allowed at least two concurrent - jobs and at most 2 + 100*throttle.score.job.factor. With a default - of 4 this means at least 2 jobs and at most 402. - - This parameter can also be set per site using the jobThrottle - profile key in a site catalog entry. - -throttle.submit - - Valid values: , off - - Default value: 4 - - Limits the number of concurrent submissions for a run. This throttle - only limits the number of concurrent tasks (jobs) that are being - sent to sites, not the total number of concurrent jobs that can be - run. The submission stage in GRAM is one of the most CPU expensive - stages (due mostly to the mutual authentication and delegation). - Having too many concurrent submissions can overload either or both - the submit host CPU and the remote host/head node causing degraded - performance. - -throttle.transfers - - Valid values: , off - - Default value: 4 - - Limits the total number of concurrent file transfers that can happen - at any given time. File transfers consume bandwidth. Too many - concurrent transfers can cause the network to be overloaded - preventing various other signaling traffic from flowing properly. - -ticker.disable - - Valid values: true, false - - Default value: false - - When set to true, suppresses the output progress ticker that Swift - sends to the console every few seconds during a run (since Swift 0.9) - -wrapper.invocation.mode - - Valid values: absolute, relative - - Default value: absolute - - Determines if Swift remote wrappers will be executed by specifying - an absolute path, or a path relative to the job initial working - directory. In most cases, execution will be successful with either - option. However, some execution sites ignore the specified initial - working directory, and so absolute must be used. Conversely on - some sites, job directories appear in a different place on the - worker node file system than on the filesystem access node, with the - execution system handling translation of the job initial working - directory. In such cases, relative mode must be used. (since Swift - 0.9) - -use.wrapper.staging - - Valid values: true, false - Default value: false - - Determines if the Swift wrapper should do file staging. - -wrapper.parameter.mode - - Controls how Swift will supply parameters to the remote wrapper - script. args mode will pass parameters on the command line. Some - execution systems do not pass commandline parameters sufficiently - cleanly for Swift to operate correctly. files mode will pass - parameters through an additional input file (since Swift 0.95). This - provides a cleaner communication channel for parameters, at the - expense of transferring an additional file for each job invocation. - -wrapperlog.always.transfer - - Valid values: true, false - - Default value: false - - This property controls when output from the Swift remote wrapper is - transfered back to the submit site. When set to false, wrapper - logs are only transfered for jobs that fail. If set to true, - wrapper logs are transfered after every job is completed or failed. - -Example: - ----- -sites.file=${vds.home}/etc/sites.xml -tc.file=${vds.home}/etc/tc.data -ip.address=192.168.0.1 ----- - -Monitoring Swift -~~~~~~~~~~~~~~~~ - -A Swift run can be monitored for progress and resource usage. To monitor the resource usage, use the +-monitor+ option with the Swift commandline. For example: - ----- -swift -tc.file tc -sites.file sites.xml -config cf modis04.swift -monitor ----- - -This will produce a gui/X window consisting of the following quantities: - -* Allocated memory -* Heap Size -* Total Threads -* Total Workers - -.Figure 4. Resource Monitor -image:swift_monitor.png[] - -Figure 4 shows a snapshot of a Swift resource monitor. - - -The progress of a Swift run can be monitored using the +-tui+ option. For example: - ----- -swift -tc.file tc -sites.file sites.xml -config cf modis04.swift -tui ----- - -This will produce a textual user interface with multiple tabs, each showing the following features of the current Swift run: - -* A summary view showing task status -* An apps tab -* A jobs tab -* A transfer tab -* A scheduler tab -* A Tast statistics tab -* A customized tab called 'Ben's View' - -Navigation between these tabs can be done using the function keys f2 through f8. - Added: trunk/docs/userguide/debugging =================================================================== --- trunk/docs/userguide/debugging (rev 0) +++ trunk/docs/userguide/debugging 2014-01-08 22:04:50 UTC (rev 7462) @@ -0,0 +1,137 @@ +Debugging +--------- + +Retries +~~~~~~~ +If an application procedure execution fails, Swift will attempt that +execution again repeatedly until it succeeds, up until the limit defined +in the execution.retries configuration property. + +Site selection will occur for retried jobs in the same way that it +happens for new jobs. Retried jobs may run on the same site or may run +on a different site. + +If the retry limit execution.retries is reached for an application +procedure, then that application procedure will fail. This will cause +the entire run to fail - either immediately (if the lazy.errors +property is false) or after all other possible work has been attempted +(if the lazy.errors property is true). + +With or without lazy errors, each app is re-tried +times before it is considered failed for good. An app that has failed +but still has retries left will appear as "Failed but can retry". + +Without lazy errors, once the first (time-wise) app has run out of +retries, the whole run is stopped and the error reported. + +With lazy errors, if an app fails after all retries, its outputs are +marked as failed. All apps that depend on failed outputs will also fail +and their outputs marked as failed. All apps that have non-failed +outputs will continue to run normally until everything that can proceed +completes. + +For example, if you have: + +---- +foreach x in [1:1024] { + app(x); +} +---- + +If the first started app fails, all the other ones can still +continue, and if they don't otherwise fail, the run will only terminate +when all 1023 of them will complete. + +So basically the idea behind lazy errors is to run EVERYTHING that can +safely be run before stopping. + +Some types of errors (such as internal swift errors happening in an app +thread) will still stop the run immediately even in lazy errors mode. +But we all know there are no such things as internal swift errors :) + +Restarts +~~~~~~~~ +If a run fails, Swift can resume the program from the point of failure. +When a run fails, a restart log file will be left behind in the run directory +called restart.log. This restart log can then be passed to a subsequent Swift +invocation using the -resume parameter. Swift will resume execution, avoiding +execution of invocations that have previously completed successfully. The Swift +source file and input data files should not be modified between runs. + +Normally, if the run completes successfully, the restart log file is deleted. +If however the workflow fails, swift can use the restart log file to continue +execution from a point before the failure occurred. In order to restart from a +restart log file, the -resume logfile argument can be used after the +Swift script file name. Example: + +---- +$ swift -resume runNNN/restart.log example.swift. +---- + +Monitoring Swift +~~~~~~~~~~~~~~~ + +A Swift run can be monitored for progress and resource usage. To monitor the resource usage, use the +-monitor+ option with the Swift commandline. For example: + +---- +swift -tc.file tc -sites.file sites.xml -config cf modis04.swift -monitor +---- + +This will produce a gui/X window consisting of the following quantities: + +* Allocated memory +* Heap Size +* Total Threads +* Total Workers + +.Figure 4. Resource Monitor +image:swift_monitor.png[] + +Figure 4 shows a snapshot of a Swift resource monitor. + +The progress of a Swift run can be monitored using the +-tui+ option. For example: + +---- +swift -tc.file tc -sites.file sites.xml -config cf modis04.swift -tui +---- + +This will produce a textual user interface with multiple tabs, each showing the following features of the current Swift run: + +* A summary view showing task status +* An apps tab +* A jobs tab +* A transfer tab +* A scheduler tab +* A Tast statistics tab +* A customized tab called 'Ben's View' + +Navigation between these tabs can be done using the function keys f2 through f8. + +Log analysis +~~~~~~~~~~~~ +Swift logs can contain a lot of information. Swift includes a utility called "swiftlog" that +analyzes the log and prints a nicely formatted summary of all tasks of a given run. + +.swiftlog usage +------ +$ swiftlog run027 +Task 1 + App name = cat + Command line arguments = data.txt data2.txt + Host = westmere + Start time = 17:09:59,607+0000 + Stop time = 17:10:22,962+0000 + Work directory = catsn-run027/jobs/r/cat-r6pxt6kl + Staged in files = file://localhost/data.txt file://localhost/data2.txt + Staged out files = catsn.0004.outcatsn.0004.err + +Task 2 + App name = cat + Command line arguments = data.txt data2.txt + Host = westmere + Start time = 17:09:59,607+0000 + Stop time = 17:10:22,965+0000 + Work directory = catsn-run027/jobs/q/cat-q6pxt6kl + Staged in files = file://localhost/data.txt file://localhost/data2.txt + Staged out files = catsn.0010.outcatsn.0010.err +----- Added: trunk/docs/userguide/gettingStarted =================================================================== --- trunk/docs/userguide/gettingStarted (rev 0) +++ trunk/docs/userguide/gettingStarted 2014-01-08 22:04:50 UTC (rev 7462) @@ -0,0 +1,27 @@ +Getting Started +--------------- +This section will provide links and information to new +Swift users about how to get started using Swift. + +Quickstart +~~~~~~~~~~ +This section provides the basic steps for downloading and installing Swift. + +* Swift requires that a recent version of Oracle Java is installed. More information about installing Java can be found at http://www.oracle.com/technetwork/java. +* Download Swift 0.95 at http://swiftlang.org/packages/swift-0.95.tar.gz. +* Extract by running "tar xfz swift-0.95.tar.gz" +* Add Swift to $PATH by running "export PATH=$PATH:/path/to/swift-0.95/bin" +* Verify swift is working by running "swift -version" + +Tutorials +~~~~~~~~~ +There are a few tutorials available for specific clusters and +supercomputers. + +http://swift-lang.org/tutorials/cloud/tutorial.html[Swift on Clouds and Ad Hoc collections of workstations] + +http://swift-lang.org/tutorials/osgconnect/tutorial.html[Swift on OSG Connect] + +http://swiftlang.org/tutorials/cray/tutorial.html[Swift on Crays] + +http://swiftlang.org/tutorials/midway/tutorial.html[Swift on RCC Midway Cluster at UChicago / Slurm] Deleted: trunk/docs/userguide/howto_tips =================================================================== --- trunk/docs/userguide/howto_tips 2014-01-08 21:57:59 UTC (rev 7461) +++ trunk/docs/userguide/howto_tips 2014-01-08 22:04:50 UTC (rev 7462) @@ -1,160 +0,0 @@ -How-To Tips for Specific User Communities ------------------------------------------ - -Saving Logs - for UChicago CI Users -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -If you have a UChicago Computation Institute account, run this command -in your submit directory after each run. It will copy all your logs and -kickstart records into a directory at the CI for reporting, usage -tracking, support and debugging. - ----- -rsync --ignore-existing *.log *.d login.ci.uchicago.edu:/disks/ci-gpfs/swift/swift-logs/ --verbose ----- - -Specifying TeraGrid allocations -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -TeraGrid users with no default project or with several project -allocations can specify a project allocation using a profile key in the -site catalog entry for a TeraGrid site: - ----- -TG-CCR080002N ----- - -More information on the TeraGrid allocations process can be found here -. - -Launching MPI jobs from Swift -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - -There are several ways to run MPI jobs under Swift. Two will be discussed here - -calling mpiexec from a wrapper script, and using the MPICH/coasters interface. - -Calling mpiexec -^^^^^^^^^^^^^^^ -In this example, a single MPI program will run across two nodes. For this to -happen, sites.xml must be configured to allocate two nodes but only run a -single job on them. A wrapper script must then be used to call mpiexec. - -sites.xml -+++++++++ -First, we need to make sure that Swift will allocate exactly two nodes. This -can be done with the maxnodes and nodegranularity settings. - ------ -2 -2 ------ - -Next, we want to make sure that the MPI program is called only once on those -nodes. There are two settings we must set to get this behavior: ------ -1 -single ------ - -tc.data -+++++++ -The app defined in tc.data should be a shell script wrapper to the actual -program that is being called. Let's assume in this example that the MPI program -we are using is called "mpitest", and the wrapper script will be called -"mpitest.sh". The tc.data will look like this then: - ------ -host mpitest /path/to/mpitest.sh ------ - -Wrapper script -++++++++++++++ -The wrapper script in this example, mpitest.sh, will call mpiexec and launch -the real MPI program. Here is an example: - ------ -#!/bin/bash - -mpiexec /path/to/mpitest "$@" ------ - -Swift then makes an invocation that does not look any different from any other -invocation. In the code below, we pass one input file and get back one output -file. - ----- -type file; - -app (file output_file) mpitest (file input_file) -{ - mpitest @input_file @output_file; -} - -file input <"input.txt">; -file output <"output.txt">; - -output = mpitest(input); ----- - -==== MPICH/Coasters - -In this case, the user desires to launch many MPI jobs within a single -Coasters allocation, reusing Coasters workers for variable-sized jobs. -The reuse of the Coasters workers allows the user to launch many -MPI jobs in rapid succession with minimal overhead. - -The user must access to MPICH compiled for sockets, with +mpiexec+ in -the +PATH+ environment variable. Swift uses this MPICH installation -to launch the user processes on the remote Coasters workers, which are -able to connect back to +mpiexec+ and coordinate the job launch. The -infrastructure must allow the user MPI processes to find each other -and communicate over sockets. - -To configure the user MPI job, simply add +mpi.processes+ and -+mpi.ppn+ to the profile in the +tc.file+: - ----- -pbs_site my_program /path/to/program null null globus::mpi.processes=16;globus::mpi.ppn=8 ----- - -Coasters must be set with +jobsPerNode=1+. - -This runs +mpiexec+ locally, and allocates 2 Coasters workers (2 -nodes), each with 8 MPI processes. Thus, +MPI_COMM_WORLD+ has size -16. - - - -Running on Windows -~~~~~~~~~~~~~~~~~~ - -Swift has the ability to run on a Windows machine, as well as the -ability to submit jobs to a Windows site (provided that an appropriate -provider is used). - -In order to launch Swift on Windows, use the provided batch file -(swift.bat). In certain cases, when a large number of jar libraries are -present in the Swift lib directory and depending on the exact location -of the Swift installation, the classpath environment variable that the -Swift batch launcher tries to create may be larger than what Windows can -handle. In such a case, either install Swift in a directory closer to -the root of the disk (say, c:\swift) or remove non-essential jar files -from the Swift lib directory. - -Due to the large differences between Windows and Unix environments, -Swift must use environment specific tools to achieve some of its goals. -In particular, each Swift executable is launched using a wrapper script. -This script is a Bourne Shell script. On Windows machines, which have no -Bourne Shell interpreter installed by default, the Windows Scripting -Host is used instead, and the wrapper script is written in VBScript. -Similarly, when cleaning up after a run, the "/bin/rm" command available -in typical Unix environments must be replaced by the "del" shell command. - -It is important to note that in order to select the proper set of tools -to use, Swift must know when a site runs under Windows. To inform Swift -of this, specify the "sysinfo" attribute for the "pool" element in the -site catalog. For example: - ----- - -... - ----- Deleted: trunk/docs/userguide/kickstart =================================================================== --- trunk/docs/userguide/kickstart 2014-01-08 21:57:59 UTC (rev 7461) +++ trunk/docs/userguide/kickstart 2014-01-08 22:04:50 UTC (rev 7462) @@ -1,31 +0,0 @@ -Kickstart ---------- -Kickstart is a tool that can be used to gather various information about -the remote execution environment for each job that Swift tries to run. - -For each job, Kickstart generates an XML invocation record. By default -this record is staged back to the submit host if the job fails. - -Before it can be used it must be installed on the remote site and the -sites file must be configured to point to kickstart. - -Kickstart can be downloaded as part of the Pegasus 'worker package' -available from the worker packages section of the Pegasus download page -. - -Untar the relevant worker package somewhere where it is visible to all -of the worker nodes on the remote execution machine (such as in a shared -application filesystem). - -Now configure the gridlaunch attribute of the sites catalog to point to -that path, by adding a gridlaunch attribute to the pool element in -the site catalog: - ----- - -... - ----- - -There are various kickstart.* properties, which have sensible default -values. These are documented in the properties section. Modified: trunk/docs/userguide/language =================================================================== --- trunk/docs/userguide/language 2014-01-08 21:57:59 UTC (rev 7461) +++ trunk/docs/userguide/language 2014-01-08 22:04:50 UTC (rev 7462) @@ -1,7 +1,7 @@ -The Swift scripting Language ----------------------------- +The Swift Language +------------------ -Language basics +Language Basics ~~~~~~~~~~~~~~~ A Swift script describes data, application components, invocations of applications components, and the inter-relations (data flow) between @@ -145,7 +145,6 @@ Arrays and Parallel Execution ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - Arrays of values can be declared using the [] suffix. Following is an example of an array of strings: @@ -184,7 +183,6 @@ Associative Arrays ~~~~~~~~~~~~~~~~~~ - By default, array keys are integers. However, other primitive types are also allowed as array keys. The syntax for declaring an array with a key type different than the default is: @@ -302,7 +300,6 @@ Compound procedures ~~~~~~~~~~~~~~~~~~~ - As with many other programming languages, procedures consisting of Swift script can be defined. These differ from the previously mentioned procedures declared with the app keyword, as they invoke @@ -344,7 +341,6 @@ More about types ~~~~~~~~~~~~~~~~ - Each variable and procedure parameter in Swift script is strongly typed. Types are used to structure data, to aid in debugging and checking program correctness and to influence how Swift interacts with data. @@ -432,3 +428,1390 @@ values in memory or as out-of-core files on disk. Language constructs called mappers specify how each piece of data is stored. +More technical details about Swift script +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +The syntax of Swift script has a superficial resemblance to C and Java. +For example, { and } characters are used to enclose blocks of statements. + +A Swift script consists of a number of statements. Statements may +declare types, procedures and variables, assign values to variables, and +express operations over arrays. + +Variables +~~~~~~~~~ +Variables in Swift scripts are declared to be of a specific type. +Assignments to those variables must be data of that type. Swift script +variables are single-assignment - a value may be assigned to a variable +at most once. This assignment can happen at declaration time or later on +in execution. When an attempt to read from a variable that has not yet +been assigned is made, the code performing the read is suspended until +that variable has been written to. This forms the basis for Swift's +ability to parallelise execution - all code will execute in parallel +unless there are variables shared between the code that cause sequencing. + + +Variable Declarations +~~~~~~~~~~~~~~~~~~~~~ +Variable declaration statements declare new variables. They can +optionally assign a value to them or map those variables to on-disk files. + +Declaration statements have the general form: + +---- +typename variablename ( | = initialValue ) ; +---- + +The format of the mapping expression is defined in the Mappers section. +initialValue may be either an expression or a procedure call that +returns a single value. + +Variables can also be declared in a multivalued-procedure statement, +described in another section. + + +Assignment Statements +~~~~~~~~~~~~~~~~~~~~~ +Assignment statements assign values to previously declared variables. +Assignments may only be made to variables that have not already been +assigned. Assignment statements have the general form: + +---- +variable = value; +---- + +where value can be either an expression or a procedure call that returns +a single value. + +Variables can also be assigned in a multivalued-procedure statement, +described in another section. + + +Procedures +~~~~~~~~~~ +There are two kinds of procedure: An atomic procedure, which describes +how an external program can be executed; and compound procedures which +consist of a sequence of Swift script statements. + +A procedure declaration defines the name of a procedure and its input +and output parameters. Swift script procedures can take multiple inputs +and produce multiple outputs. Inputs are specified to the right of the +function name, and outputs are specified to the left. For example: + +---- +(type3 out1, type4 out2) myproc (type1 in1, type2 in2) +---- + +The above example declares a procedure called myproc, which has two +inputs in1 (of type type1) and in2 (of type type2) and two +outputs out1 (of type type3) and out2 (of type type4). + +A procedure input parameter can be an optional parameter in which case +it must be declared with a default value. When calling a procedure, both +positional parameter and named parameter passings can be passed, +provided that all optional parameters are declared after the required +parameters and any optional parameter is bound using keyword parameter +passing. For example, if myproc1 is defined as: + +---- +(binaryfile bf) myproc1 (int i, string s="foo") +---- + +Then that procedure can be called like this, omitting the optional +---- +parameter s: +binaryfile mybf = myproc1(1); +---- + +or like this supplying a value for the optional parameter s: +---- +binaryfile mybf = myproc1 (1, s="bar"); +---- + +Atomic procedures +^^^^^^^^^^^^^^^^^ +An atomic procedure specifies how to invoke an external executable +program, and how logical data types are mapped to command line arguments. + +Atomic procedures are defined with the app keyword: + +---- +app (binaryfile bf) myproc (int i, string s="foo") { + myapp i s @filename(bf); +} +---- + +which specifies that myproc invokes an executable called myapp, +passing the values of i, s and the filename of bf as command line +arguments. + + +Compound procedures +^^^^^^^^^^^^^^^^^^^ +A compound procedure contains a set of Swift script statements: + +---- +(type2 b) foo_bar (type1 a) { + type3 c; + c = foo(a); // c holds the result of foo + b = bar(c); // c is an input to bar +} +---- + +Control Constructs +~~~~~~~~~~~~~~~~~~ +Swift script provides if, switch, foreach, and iterate +constructs, with syntax and semantics similar to comparable constructs +in other high-level languages. + +foreach +^^^^^^^ +The foreach construct is used to apply a block of statements to each +element in an array. For example: + +---- +check_order (file a[]) { + foreach f in a { + compute(f); + } +} +---- + +foreach statements have the general form: + +---- +foreach controlvariable (,index) in expression { + statements +} +---- + +The block of statements is evaluated once for each element in +expression which must be an array, with controlvariable set to the +corresponding element and index (if specified) set to the integer +position in the array that is being iterated over. + + +if +^^ +The if statement allows one of two blocks of statements to be +executed, based on a boolean predicate. if statements generally have +the form: + +---- +if(predicate) { + statements +} else { + statements +} +---- + +where predicate is a boolean expression. + +switch +^^^^^^ +switch expressions allow one of a selection of blocks to be chosen +based on the value of a numerical control expression. switch +statements take the general form: + +---- +switch(controlExpression) { + case n1: + statements2 + case n2: + statements2 + [...] + default: + statements +} +---- + +The control expression is evaluated, the resulting numerical value used +to select a corresponding case, and the statements belonging to that +case block are evaluated. If no case corresponds, then the statements +belonging to the default block are evaluated. + +Unlike C or Java switch statements, execution does not fall through to +subsequent case blocks, and no break statement is necessary at the +end of each block. + +Following is an example of a switch expression in Swift: + +---- +int score=60; +switch (score){ +case 100: + tracef("%s\n", "Bravo!"); +case 90: + tracef("%s\n", "very good"); +case 80: + tracef("%s\n", "good"); +case 70: + tracef("%s\n", "fair"); +default: + tracef("%s\n", "unknown grade"); + } +---- + +iterate +^^^^^^^ +iterate expressions allow a block of code to be evaluated repeatedly, +with an iteration variable being incremented after each iteration. + +The general form is: + +---- +iterate var { + statements; +} until (terminationExpression); +---- + +Here _var_ is the iteration variable. Its initial value is 0. After each iteration, +but before _terminationExpression_ is evaluated, the iteration variable is incremented. +This means that if the termination expression is a function of only the iteration variable, +the body will never be executed while the termination expression is true. + +Example: + +---- +iterate i { + trace(i); // will print 0, 1, and 2 +} until (i == 3); +---- + +Variables declared inside the body of _iterate_ can be used in the termination expression. +However, their values will reflect the values calculated as part of the last invocation +of the body, and may not reflect the incremented value of the iteration variable: + +---- +iterate i { + trace(i); + int j = i; // will print 0, 1, 2, and 3 +} until (j == 3); +---- + +Operators +~~~~~~~~~ +The following infix operators are available for use in Swift script +expressions. + +[options="header, autowidth"] +|================= +|operator|purpose +|+|numeric addition; string concatenation +|-|numeric subtraction +|*|numeric multiplication +|/|floating point division +|%/|integer division +|%%|integer remainder of division +|== !=|comparison and not-equal-to +|< > <= >=|numerical ordering +|&& \|\||boolean and, or +|!|boolean not +|================= + +Global constants +~~~~~~~~~~~~~~~~ + +At the top level of a Swift script program, the global modified may be +added to a declaration so that it is visible throughout the program, +rather than only at the top level of the program. This allows global +constants (of any type) to be defined. + +Imports +~~~~~~~ +The import directive can be used to import definitions from another +Swift file. + +For example, a Swift script might contain this: + +---- +import "defs"; +file f; +---- + +which would import the content of defs.swift: + +---- +type file; +---- + +Imported files are read from two places. They are either read from +the path that is specified from the import command, such as: +---- +import "definitions/file/defs"; +---- + +or they are read from the environment variable SWIFT_LIB. This +environment variable is used just like the PATH environment +variable. For example, if the command below was issued to the bash +shell: +---- +export SWIFT_LIB=${HOME}/Swift/defs:${HOME}/Swift/functions +---- +then the import command will check for the file defs.swift in both +"$\{HOME}/Swift/defs" and "$\{HOME}/Swift/functions" first before trying +the path that was specified in the import command. + +Other valid imports: +---- +import "../functions/func" +import "/home/user/Swift/definitions/defs" +---- + +There is no requirement that a module is imported only once. If a module +is imported multiple times, for example in different files, then Swift +will only process the imports once. + +Imports may contain anything that is valid in a Swift script, +including the code that causes remote execution. + +Mappers +~~~~~~~ +Mappers provide a mechanism to specify the layout of mapped datasets on +disk. This is needed when Swift must access files to transfer them to +remote sites for execution or to pass to applications. + +Swift provides a number of mappers that are useful in common cases. This +section details those mappers. For more complex cases, it is +possible to write application-specific mappers in Java and use them +within a Swift script. + + +The Single File Mapper +^^^^^^^^^^^^^^^^^^^^^^ +The single_file_mapper maps a single physical file to a dataset. + +[options="header, autowidth"] +|======================= +|Swift variable|Filename +|f|myfile +|f [0]|INVALID +|f.bar|INVALID +|======================= + +[options="header, autowidth"] +|================= +|parameter|meaning +|file|The location of the physical file including path and file name. +|================= + +Example: +---- +file f ; +---- + +There is a simplified syntax for this mapper: +---- +file f <"plot_outfile_param">; +---- + +The Simple Mapper +^^^^^^^^^^^^^^^^^ +The simple_mapper maps a file or a list of files into an array by +prefix, suffix, and pattern. If more than one file is matched, each of +the file names will be mapped as a subelement of the dataset. + +[options="header, autowidth"] +|==================== +|Parameter|Meaning +|location|A directory that the files are located. +|prefix|The prefix of the files +|suffix|The suffix of the files, for instance: ".txt" +|padding| The number of digits used to uniquely identify the mapped file. This is an optional parameter which defaults to 4. +|pattern|A UNIX glob style pattern, for instance: "\*foo*" would match +all file names that contain foo. When this mapper is used to specify +output filenames, pattern is ignored. +|==================== + +---- +type file; +file f ; +---- + +The above maps all filenames that start with foo and have an extension +.txt into file f. + +[options="header, autowidth"] +|================ +|Swift variable|Filename +|f|foo.txt +|================= +---- +type messagefile; + +(messagefile t) greeting(string m) {. + app { + echo m stdout=@filename(t); + } +} + +messagefile outfile ; + +outfile = greeting("hi"); +---- + +This will output the string 'hi' to the file foo.txt. + +The simple_mapper can be used to map arrays. It will map the array +index into the filename between the prefix and suffix. + +---- +type messagefile; + +(messagefile t) greeting(string m) { + app { + echo m stdout=@filename(t); + } +} + +messagefile outfile[] ; + +outfile[0] = greeting("hello"); +outfile[1] = greeting("middle"); +outfile[2] = greeting("goodbye"); +---- + +[options="header, autowidth"] +|======================= +|Swift variable|Filename +|outfile[0]|baz00.txt +|outfile[1]|baz01.txt +|outfile[2]|baz02.txt +|======================= + +simple_mapper can be used to map structures. It will map the name of +the structure member into the filename, between the prefix and the suffix. + +---- +type messagefile; + +type mystruct { + messagefile left; + messagefile right; +}; + +(messagefile t) greeting(string m) { + app { + echo m stdout=@filename(t); + } +} + +mystruct out ; + +out.left = greeting("hello"); +out.right = greeting("goodbye"); +---- + +This will output the string "hello" into the file qux.left.txt and the +string "goodbye" into the file qux.right.txt. + +[options="header, autowidth"] +|======================= +|Swift variable|Filename +|out.left|quxleft.txt +|out.right|quxright.txt +|======================= + +Concurrent Mapper +^^^^^^^^^^^^^^^^^ +The concurrent_mapper is almost the same as the simple mapper, except that +it is used to map an output file, and the filename generated will +contain an extract sequence that is unique. This mapper is the default +mapper for variables when no mapper is specified. + + +[options="header, autowidth"] +|================= +|Parameter|Meaning +|location|A directory that the files are located. +|prefix|The prefix of the files +|suffix|The suffix of the files, for instance: ".txt" +pattern A UNIX glob style pattern, for instance: "\*foo*" would match +all file names that contain foo. When this mapper is used to specify +output filenames, pattern is ignored. +|================= + +Example: +---- +file f1; +file f2 ; +---- +The above example would use concurrent mapper for f1 and f2, and +generate f2 filename with prefix "foo" and extension ".txt" + + +Filesystem Mapper +^^^^^^^^^^^^^^^^^ +The filesys_mapper is similar to the simple mapper, but maps a file or a +list of files to an array. Each of the filename is mapped as an element +in the array. The order of files in the resulting array is not defined. + +TODO: note on difference between location as a relative vs absolute path +w.r.t. staging to remote location - as mihael said: It's because you +specify that location in the mapper. Try location="." instead of +location="/sandbox/..." + +[options="header, autowidth"] +|====================== +|parameter|meaning +|location|The directory where the files are located. +|prefix|The prefix of the files +|suffix|The suffix of the files, for instance: ".txt" +|pattern|A UNIX glob style pattern, for instance: "\*foo*" would match +all file names that contain foo. +|====================== + +Example: +---- +file texts[] ; +---- + +The above example would map all filenames that start with "foo" and +have an extension ".txt" into the array texts. For example, if the +specified directory contains files: foo1.txt, footest.txt, +foo__1.txt, then the mapping might be: + +[options="header, autowidth"] +|================= +|Swift variable|Filename +|texts[0]|footest.txt +|texts[1]|foo1.txt +|texts[2]|foo__1.txt +|================= + +Fixed Array Mapper +^^^^^^^^^^^^^^^^^^ +The fixed_array_mapper maps from a string that contains a list of +filenames into a file array. + +[options="header, autowidth"] +|================= +|parameter|Meaning +|files|A string that contains a list of filenames, separated by space, +comma or colon +|================= + +Example: + +---- +file texts[] ; +---- + +would cause a mapping like this: + +[options="header, autowidth"] +|======== +|Swift variable|Filename +|texts[0]|file1.txt +|texts[1]|fileB.txt +|texts[2]|file3.txt +|======== + +Array Mapper +^^^^^^^^^^^^ +The array_mapper maps from an array of strings into a file + +[options="header, autowidth"] +|============ +|parameter|meaning +|files|An array of strings containing one filename per element +|============== + +Example: +---- +string s[] = [ "a.txt", "b.txt", "c.txt" ]; + +file f[] ; +---- + +This will establish the mapping: + +[options="header, autowidth"] +|========== +|Swift variable|Filename +|f[0]|a.txt +|f[1]|b.txt +|f[2]|c.txt +|========== + +Regular Expression Mapper +^^^^^^^^^^^^^^^^^^^^^^^^^ +The regexp_mapper transforms one file name to another using regular +expression matching. + +[options="header, autowidth"] +|========== +|parameter|meaning +|source|The source file name +|match|Regular expression pattern to match, use |()| to match whatever +regular expression is inside the parentheses, and indicate the start and +end of a group; the contents of a group can be retrieved with the +|\\number|special sequence (two backslashes are needed because the +backslash is an escape sequence introducer) +|transform|The pattern of the file name to transform to, use \number to +reference the group matched. +|========== + +Example: +---- +file s <"picture.gif">; +file f ; +---- + +This example transforms a file ending gif into one ending jpg and +maps that to a file. + +[options="header, autowidth"] +|=========== +|Swift variable|Filename +|f|picture.jpg +|============= + +Structured Regular Expression Mapper +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ + +The structured_regexp_mapper is similar to the regexp_mapper with the only +difference that it can be applied to arrays while the regexp_mapper cannot. + +[options="header, autowidth"] +|========== +|parameter|meaning +|source|The source file name +|match|Regular expression pattern to match, use |()| to match whatever +regular expression is inside the parentheses, and indicate the start and +end of a group; the contents of a group can be retrieved with the +|\\number|special sequence (two backslashes are needed because the +backslash is an escape sequence introducer) +|transform|The pattern of the file name to transform to, use \number to +reference the group matched. +|========== + +Example: +---- +file s[] ; + +file f[] ; +---- + +This example transforms all files in a list that end in gif to end in jpg and maps +the list to those files. + +CSV Mapper +^^^^^^^^^^ +The csv_mapper maps the content of a CSV (comma-separated value) file +into an array of structures. The dataset type needs to be correctly +defined to conform to the column names in the file. For instance, if the +file contains columns: name age GPA then the type needs to have member +elements like this: + +---- +type student { + file name; + file age; + file GPA; +} +---- + +If the file does not contain a header with column info, then the column +names are assumed as column1, column2, etc. + +[options="header, autowidth"] +|============ +|Parameter|Meaning +|file|The name of the CSV file to read mappings from. +|header|Whether the file has a line describing header info; default is |true| +|skip|The number of lines to skip at the beginning (after header line); +default is 0. +|hdelim|Header field delimiter; default is the value of the |delim| parameter +|delim|Content field delimiters; defaults are space, tab and comma +|============= + +Example: +---- +student stus[] ; +---- + +The above example would read a list of student info from file +"stu_list.txt" and map them into a student array. By default, the file +should contain a header line specifying the names of the columns. If +stu_list.txt contains the following: + +---- +name,age,gpa +101-name.txt, 101-age.txt, 101-gpa.txt +name55.txt, age55.txt, age55.txt +q, r, s +---- + +then some of the mappings produced by this example would be: + +[options="header, autowidth"] +|========= +|stus[0].name|101-name.txt +|stus[0].age|101-age.txt +|stus[0].gpa|101-gpa.txt +|stus[1].name|name55.txt +|stus[1].age|age55.txt +|stus[1].gpa|gpa55.txt +|stus[2].name|q +|stus[2].age|r +|stus[2].gpa|s +|========= + +External Mapper +^^^^^^^^^^^^^^^ +The external mapper, ext maps based on the output of a supplied Unix +executable. + +[option="header, autowidth"] +|============= +|parameter|meaning +|exec|The name of the executable (relative to the current directory, if +an absolute path is not specified) +|*|Other parameters are passed to the executable prefixed with a - symbol +|============== + +The output (stdout) of the executable should consist of two columns of data, +separated by a space. The first column should be the path of the mapped +variable, in Swift script syntax (for example [2] means the 2nd element of an +array) or the symbol $ to represent the root of the mapped variable. The +following table shows the symbols that should appear in the first column +corresponding to the mapping of different types of swift constructs such as +scalars, arrays and structs. + +[option="header, autowidth"] +|============= +|Swift construct|first column|second column +|scalar|$|file_name +|anarray[]|[]|file_name +|2dimarray[][]|[][]|file_name +|astruct.fld|fld|file_name +|astructarray[].fldname|[].fldname|file_name +|============== + +Example: With the following in mapper.sh, + +---- +#!/bin/bash +echo "[2] qux" +echo "[0] foo" +echo "[1] bar" +---- + +then a mapping statement: + +---- +student stus[] ; +---- + +would map + +[options="header, autowidth"] +|============ +|Swift variable|Filename +|stus[0]|foo +|stus[1]|bar +|stus[2]|qux +|=========== + +Advanced Example: The following mapper.sh is an advanced example of an external +mapper that maps a two-dimensional array to a directory of files. The files in +the said directory are identified by their names appended by a number between +000 and 099. The first index of the array maps to the first part of the +filename while the second index of the array maps to the second part of the +filename. + +---- +#!/bin/sh + +#take care of the mapper args +while [ $# -gt 0 ]; do + case $1 in + -location) location=$2;; + -padding) padding=$2;; + -prefix) prefix=$2;; + -suffix) suffix=$2;; + -mod_index) mod_index=$2;; + -outer_index) outer_index=$2;; + *) echo "$0: bad mapper args" 1>&2 + exit 1;; + esac + shift 2 +done + +for i in `seq 0 ${outer_index}` +do + for j in `seq -w 000 ${mod_index}` + do + fj=`echo ${j} | awk '{print $1 +0}'` #format j by removing leading zeros + echo "["${i}"]["${fj}"]" ${location}"/"${prefix}${j}${suffix} + done +done +---- + +The mapper definition is as follows: + +---- +file_dat dat_files[][] < ext; + exec="mapper.sh", + padding=3, + location="output", + prefix=@strcat( str_root, "_" ), + suffix=".dat", + outer_index=pid, + mod_index=n >; + +---- + +Assuming there are 4 files with name aaa, bbb, ccc, ddd and a mod_index of 10, +we will have 4x10=40 files mapped to a two-dimensional array in the following +pattern: + +[options="header, autowidth"] +|============ +|Swift variable|Filename +|stus[0][0]|output/aaa_000.dat +|stus[0][1]|output/aaa_001.dat +|stus[0][2]|output/aaa_002.dat +|stus[0][3]|output/aaa_003.dat +|...|... +|stus[0][9]|output/aaa_009.dat +|stus[1][0]|output/bbb_000.dat +|stus[1][1]|output/bbb_001.dat +|...|... +|stus[3][9]|output/ddd_009.dat +|=========== + +Executing app procedures +~~~~~~~~~~~~~~~~~~~~~~~~ +This section describes how Swift executes app procedures, and +requirements on the behaviour of application programs used in app +procedures. These requirements are primarily to ensure that the Swift +can run your application in different places and with the various fault +tolerance mechanisms in place. + + +Mapping of app semantics into unix process execution semantics +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ +This section describes how an app procedure invocation is translated +into a (remote) unix process execution. It does not describe the +mechanisms by which Swift performs that translation; that is described +in the next section. + +In this section, this example Swift script is used for reference: + +---- +type file; + +app (file o) count(file i) { + wc @i stdout=@o; +} + +file q <"input.txt">; +file r <"output.txt">; +---- + +The executable for wc will be looked up in tc.data. + +This unix executable will then be executed in some application +procedure workspace. This means: + +Each application procedure workspace will have an application workspace +directory. (TODO: can collapse terms application procedure workspace +and application workspace directory ? + +This application workspace directory will not be shared with any other +application procedure execution attempt; all application procedure +execution attempts will run with distinct application procedure +workspaces. (for the avoidance of doubt: If a Swift script procedure +invocation is subject to multiple application procedure execution +attempts (due to Swift-level restarts, retries or replication) then each +of those application procedure execution attempts will be made in a +different application procedure workspace. ) + +The application workspace directory will be a directory on a POSIX +filesystem accessible throughout the application execution by the +application executable. + +Before the application executable is executed: + + * The application workspace directory will exist. + + * The input files will exist inside the application workspace + directory (but not necessarily as direct children; there may be + subdirectories within the application workspace directory). + + * The input files will be those files mapped to input parameters + of the application procedure invocation. (In the example, this + means that the file input.txt will exist in the application + workspace directory) + + * For each input file dataset, it will be the case that @filename + or @filenames invoked with that dataset as a parameter will + return the path relative to the application workspace directory + for the file(s) that are associated with that dataset. (In the + example, that means that @i will evaluate to the path input.txt) + + * For each file-bound parameter of the Swift procedure invocation, + the associated files (determined by data type?) will always exist. + + * The input files must be treated as read only files. This may or + may not be enforced by unix file system permissions. They may or + may not be copies of the source file (conversely, they may be + links to the actual source file). + +During/after the application executable execution, the following must +be true: + + * If the application executable execution was successful (in the + opinion of the application executable), then the application + executable should exit with unix return code 0; if the + application executable execution was unsuccessful (in the opinion + of the application executable), then the application executable + should exit with unix return code not equal to 0. + + * Each file mapped from an output parameter of the Swift script + procedure call must exist. Files will be mapped in the same way as + for input files. + + * The output subdirectories will be precreated + before execution by Swift if defined within a Swift script such as the + location attribute of a mapper. App executables expect to make them if + they are referred to in the wrapper scripts. + + * Output produced by running the application executable on some + inputs should be the same no matter how many times, when or where + that application executable is run. 'The same' can vary depending + on application (for example, in an application it might be + acceptable for a PNG->JPEG conversion to produce different, + similar looking, output jpegs depending on the environment) + +Things to not assume: + + * Anything about the path of the application workspace directory + + * That either the application workspace directory will be deleted or + will continue to exist or will remain unmodified after execution + has finished + + * That files can be passed between application procedure + invocations through any mechanism except through files known to + Swift through the mapping mechanism (there is some exception here + for external datasets - there are a separate set of assertions + that hold for external datasets) + + * That application executables will run on any particular site of + those available, or than any combination of applications will run + on the same or different sites. + + +How Swift implements the site execution model +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +This section describes the implementation of the semantics described in +the previous section. + +Swift executes application procedures on one or more sites. + +Each site consists of: + + * worker nodes. There is some execution mechanism through which + the Swift client side executable can execute its wrapper script + on those worker nodes. This is commonly GRAM or Falkon or coasters. + + * a site-shared file system. This site shared filesystem is + accessible through some file transfer mechanism from the Swift + client side executable. This is commonly GridFTP or coasters. This + site shared filesystem is also accessible through the posix file + system on all worker nodes, mounted at the same location as seen + through the file transfer mechanism. Swift is configured with the + location of some site working directory on that site-shared file + system. + +There is no assumption that the site shared file system for one site is +accessible from another site. + +For each workflow run, on each site that is used by that run, a run +directory is created in the site working directory, by the Swift client +side. + +In that run directory are placed several subdirectories: + + * shared/ - site shared files cache + + * kickstart/ - when kickstart is used, kickstart record files for + each job that has generated a kickstart record. + + * info/ - wrapper script log files + + * status/ - job status files + + * jobs/ - application workspace directories (optionally placed + here - see below) + +Application execution looks like this: + +For each application procedure call: + +The Swift client side selects a site; copies the input files for that +procedure call to the site shared file cache if they are not already in +the cache, using the file transfer mechanism; and then invokes the +wrapper script on that site using the execution mechanism. + +The wrapper script creates the application workspace directory; places +the input files for that job into the application workspace directory +using either cp or ln -s (depending on a configuration option); +executes the application unix executable; copies output files from the +application workspace directory to the site shared directory using cp; +creates a status file under the status/ directory; and exits, +returning control to the Swift client side. Logs created during the +execution of the wrapper script are stored under the info/ directory. + +The Swift client side then checks for the presence of and deletes a +status file indicating success; and copies files from the site shared +directory to the appropriate client side location. + +The job directory is created (in the default mode) under the jobs/ +directory. However, it can be created under an arbitrary other path, +which allows it to be created on a different file system (such as a +worker node local file system in the case that the worker node has a +local file system). + +image:swift-site-model.png[] + +Technical overview of the Swift architecture +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +This section attempts to provide a technical overview of the Swift +architecture. + +Execution layer +^^^^^^^^^^^^^^^ +The execution layer causes an application program (in the form of a unix +executable) to be executed either locally or remotely. + +The two main choices are local unix execution and execution through +GRAM. Other options are available, and user provided code can also be +plugged in. + +The kickstart utility can be used to capture environmental +information at execution time to aid in debugging and provenance capture. + + +Swift script language compilation layer +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ +Step i: text to XML intermediate form parser/processor. parser written +in ANTLR - see resources/VDL.g. The XML Schema Definition (XSD) for the +intermediate language is in resources/XDTM.xsd. + +Step ii: XML intermediate form to Karajan workflow. Karajan.java - reads +the XML intermediate form. compiles to karajan workflow language - for +example, expressions are converted from Swift script syntax into Karajan +syntax, and function invocations become karajan function invocations +with various modifications to parameters to accomodate return parameters +and dataset handling. + + +Swift/karajan library layer +^^^^^^^^^^^^^^^^^^^^^^^^^^^ +Some Swift functionality is provided in the form of Karajan libraries +that are used at runtime by the Karajan workflows that the Swift +compiler generates. + +Function reference +~~~~~~~~~~~~~~~~~~ +This section details functions that are available for use in the +Swift language. + +arg +^^^ +Takes a command line parameter name as a string parameter and an +optional default value and returns the value of that string parameter +from the command line. If no default value is specified and the command +line parameter is missing, an error is generated. If a default value is +specified and the command line parameter is missing, @arg will return +the default value. + +Command line parameters recognized by @arg begin with exactly one +hyphen and need to be positioned after the script name. + +For example: + +---- +trace(arg("myparam")); +trace(arg("optionalparam", "defaultvalue")); +---- + +---- +$ swift arg.swift -myparam=hello +Swift v0.3-dev r1674 (modified locally) + +RunID: 20080220-1548-ylc4pmda +Swift trace: defaultvalue +Swift trace: hello +---- + +extractInt +^^^^^^^^^^ +extractInt(file) will read the specified file, parse an integer from +the file contents and return that integer. + +extractFloat +^^^^^^^^^^^^ +Similar to extractInt, extractFloat(file) will read the specified file, parse a float from +the file contents and return that float. + +filename +^^^^^^^^ +filename(v) will return a string containing the filename(s) for the +file(s) mapped to the variable v. When more than one filename is +returned, the filenames will be space separated inside a single string +return value. + +filenames +^^^^^^^^^ +filenames(v) will return multiple values containing the +filename(s) for the file(s) mapped to the variable v. + +length +^^^^^^ +length(array) will return the length of an array in Swift. This function will wait for all +elements in the array to be written before returning the length. + +readData +^^^^^^^^ +readData will read data from a specified file and assign it to Swift variable. The format of the input file is +controlled by the type of the return value. For scalar return types, such as +int, the specified file should contain a single value of that type. For arrays +of scalars, the specified file should contain one value per line. For complex types +of scalars, the file should contain two rows. The first row should be structure +member names separated by whitespace. The second row should be the +corresponding values for each structure member, separated by whitespace, in the +same order as the header row. For arrays of structs, the file should contain a +heading row listing structure member names separated by whitespace. There +should be one row for each element of the array, with structure member elements +listed in the same order as the header row and separated by whitespace. The following example shows how readData() can be used to populate an array of Swift struct-like complex type: + +---- +type Employee{ + string name; + int id; + string loc; +} + +Employee emps[] = readData("emps.txt"); +---- + +Where the contents of the "emps.txt" file are: + +---- +name id loc +Thomas 2222 Chicago +Gina 3333 Boston +Anne 4444 Houston +---- + +This will result in the array "emps" with 3 members. This can be processed within a Swift script using the foreach construct as follows: + +---- +foreach emp in emps{ + tracef("Employee %s lives in %s and has id %d", emp.name, emp.loc, emp.id); +} +---- + +readStructured +^^^^^^^^^^^^^^ +readStructured will read data from a specified file, like readdata, but +using a different file format more closely related to that used by the +ext mapper. + +Input files should list, one per line, a path into a Swift structure, +and the value for that position in the structure: + +---- +rows[0].columns[0] = 0 +rows[0].columns[1] = 2 +rows[0].columns[2] = 4 +rows[1].columns[0] = 1 +rows[1].columns[1] = 3 +rows[1].columns[2] = 5 +---- + +which can be read into a structure defined like this: + +---- +type vector { + int columns[]; +} + +type matrix { + vector rows[]; +} + +matrix m; + +m = readStructured("readStructured.in"); +---- + +(since Swift 0.7, was readData2(deprecated)) + +regexp +^^^^^^ +regexp(input,pattern,replacement) will apply regular expression +substitution using the Java java.util.regexp API +. +For example: + +---- +string v = regexp("abcdefghi", "c(def)g","monkey"); +---- + +will assign the value "abmonkeyhi" to the variable v. + +sprintf +^^^^^^^ +sprintf(spec, variable list) will generate a string based on the specified format. +----- +Example: string s = sprintf("\t%s\n", "hello"); +----- + +Format specifiers +[width="100%",frame="topbot"] +|====================== +|%%| % sign +|%M| Filename output (waits for close) +|%p| Format variable according to an internal format +|%b| Boolean output +|%f| Float output +|%i| int output +|%s| String output +|%k| Variable sKipped, no output +|%q| Array output +|====================== + +strcat +^^^^^^ +strcat(a,b,c,d,...) will return a string containing all of the +strings passed as parameters joined into a single string. There may be +any number of parameters. + +The + operator concatenates two strings: strcat(a,b) is the same as +a + b + +strcut +^^^^^^ +strcut(input,pattern) will match the regular expression in the +pattern parameter against the supplied input string and return the +section that matches the first matching parenthesised group. + +For example: +---- +string t = "my name is John and i like puppies."; +string name = strcut(t, "my name is ([^ ]*) "); +string out = strcat("Your name is ",name); +trace(out); +---- + +This will output the message: Your name is John. + +strjoin +^^^^^^^ +strjoin(array, delimiter) will combine the elements of an array +into a single string separated by a given delimiter. The array +passed to strjoin must be of a primitive type (string, int, float, +or boolean). It will not join the contents of an array of files. + +Example: +---- +string test[] = ["this", "is", "a", "test" ]; +string mystring = strjoin(test, " "); +tracef("%s\n", mystring); +---- + +This will print the string "this is a test". + +strsplit +^^^^^^^^ +strsplit(input,pattern) will split the input string based on +separators that match the given pattern and return a string array. + +Example: +---- +string t = "my name is John and i like puppies."; +string words[] = strsplit(t, "\\s"); +foreach word in words { + trace(word); +} +---- + +This will output one word of the sentence on each line (though not +necessarily in order, due to the fact that foreach iterations execute in +parallel). + +toInt +^^^^^ +toInt(input) will parse its input string into an integer. This can be +used with arg() to pass input parameters to a Swift script as +integers. + +toFloat +^^^^^^^ +toFloat(input) will parse its input string into a floating point number. This can be +used with arg() to pass input parameters to a Swift script as +floating point numbers. + +toString +^^^^^^^^ +toString(input) will parse its input into a string. Input can be an int, float, string, +or boolean. + +trace +^^^^^ +trace will log its parameters. By default these will appear on both +stdout and in the run log file. Some formatting occurs to produce the +log message. The particular output format should not be relied upon. + +tracef +^^^^^^ ++tracef(_spec_, _variable list_)+ will log its parameters as formatted +by the formatter _spec_. _spec_ must be a string. Checks the type of +the specifiers arguments against the variable list and allows for +certain escape characters. + +Example: +---- +int i = 3; +tracef("%s: %i\n", "the value is", i); +---- + +Specifiers: + ++%s+:: Format a string. ++%b+:: Format a boolean. ++%i+:: Format a number as an integer. ++%f+:: Format a number as a floating point number. ++%q+:: Format an array. ++%M+:: Format a mapped variable's filename. ++%k+:: Wait for the given variable but do not format it. ++%p+:: Format variable according to an internal format. + +Escape sequences: + ++\n+:: Produce a newline. ++\t+:: Produce a tab. + +Known issues: :: Swift does not correctly scan certain backslash +sequences such as +\\+. + +java +^^^^ +java(class_name, static_method, method_arg) will call a java static method of the class class_name. + +writeData +^^^^^^^^^ +writeData will write out data structures in the format described for +readData. The following example demonstrates how one can write a string "foo" into a file "writeDataPrimitive.out": + +---- +include::../../tests/language-behaviour/IO/writeDataPrimitive.swift[] +---- + Deleted: trunk/docs/userguide/log-processing =================================================================== --- trunk/docs/userguide/log-processing 2014-01-08 21:57:59 UTC (rev 7461) +++ trunk/docs/userguide/log-processing 2014-01-08 22:04:50 UTC (rev 7462) @@ -1,154 +0,0 @@ - -Log Processing --------------- - -To properly generate log plots, you must enable VDL/Karajan logging. -This can be done by putting the following lines in log4j.properties file found in the /etc directory of Swift installation: - --------------------------------------- -log4j.logger.swift=DEBUG -log4j.logger.org.globus.cog.abstraction.coaster.service.job.manager.Cpu=DEBUG -log4j.logger.org.globus.cog.abstraction.coaster.service.job.manager.Block=DEBUG --------------------------------------- - -All the executables, zsh and perl scripts mentioned in the following steps are -available in the libexec/log-processing directory of your Swift installation. - -Log plotting -~~~~~~~~~~~~ - -Normalize event times in the log to the run start time -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -* Generate the normalized log, assuming the log is titled +swift-run.log+ - ------------------------------------------- -./normalize-log.pl file.contains.start.time swift-run.log > swift-run.norm ------------------------------------------- -TODO:In what format does the start time be in 'file.contains.start.time' - - -Make a basic load plot from Coasters Cpu log lines -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -. Normalize the log. -. Build up a load data file: -+ ------------------------------------------- -./cpu-job-load.pl < swift-run.norm > load.data ------------------------------------------- -. Plot with the JFreeChart-based plotter in usertools/plotter: -+ ------------------------------------------- -swift_plotter.zsh -s load.cfg load.eps load.data ------------------------------------------- -Note: Th load.cfg is available from swift/libexec/log-processing/ - - -Make a basic job completion plot from Coasters Cpu log lines -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -. Normalize the log. - -. Build up a completed data file: -+ ------------------------------------------- -./cpu-job-completed.pl < swift-run.norm > completed.data ------------------------------------------- - -. Plot with the JFreeChart-based plotter in usertools/plotter: -+ ------------------------------------------- -swift_plotter.zsh -s completed.cfg completed.eps completed.data ------------------------------------------- - -Make a basic Block allocation plot from Coasters Block log lines -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -. Normalize the log. - -. Build up a block allocation data file: -+ ------------------------------------------- -./block-level.pl < swift-run.norm > blocks.data ------------------------------------------- - -. Plot with the JFreeChart-based plotter in usertools/plotter: -+ ------------------------------------------- -swift_plotter.zsh -s blocks.{cfg,eps,data} ------------------------------------------- - -Make a job runtime distribution plot from Coasters Cpu log lines -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -. Normalize the log. - -. Build up a job runtime file: -+ ------------------------------------------- -./extract-times.pl < swift-run.norm > times.data ------------------------------------------- - -. Put the job runtimes into 1-second buckets: -+ ------------------------------------------- -./ buckets.pl 1 times.data > buckets.data ------------------------------------------- - -. Plot with the JFreeChart-based plotter in usertools/plotter: -+ ------------------------------------------- -swift_plotter.zsh -s buckets.cfg buckets.eps buckets.data ------------------------------------------- - - -Meaning and interpretation of Swift log messages -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - -A Swift log file is typically a text file with the name of the Swift run and -its timestamp in the filename and an extension ".log". In addition, a ".rlog" -file is Swift's resume log which is used by Swift when a run is resumed using -the "-resume" option. The .rlog file is only for Swift's internal purpose and -not to be interpreted by the user. - -Each line in the log file typically consists of three parts. The first part -is the timestamp, the second is the type of log message and the third is the -message itself. The types of log messages follows the java log4j standard types -of TRACE, DEBUG, INFO, WARN, ERROR and FATAL. - -//// -This section lists the various Swift log messages and explains the meaning and -likely interpretation of those messages. Note that the list is not -comprehensive at this time. Also note that we will ignore the timestamps here. - -. _DEBUG Loader arguments: [-sites.file, sites.xml, -config, cf, -tc.file, tc, postproc-gridftp.swift]_ - Swift commandline arguments -. _DEBUG Loader Max heap: 5592449024_ - The java runtime heap size -. _DEBUG textfiles BEGIN_ - A dump of config and source files associated with this run -. _DEBUG VDL2ExecutionContext Stack dump_ -. _INFO SetFieldValue Set_ -. _INFO get__site STARTCOMPOUND thread=0-8 name=get__site_ -. _INFO vdl:execute START thread=0-8-0 tr=_ -. _INFO GlobalSubmitQueue No global submit throttle set. Using default (1024)_ -. _DEBUG vdl:execute2 THREAD_ASSOCIATION jobid=getsite-ymj72ook thread=0-8-0-1 host=localhost replicationGroup=xmj72ook_ -. _DEBUG vdl:execute2 JOB_START jobid=getsite-ymj72ook tr=getsite arguments=[644] tmpdir=postproc-gridftp-20120319-0942-adf1o1u2/jobs/y/getsite-ymj72ook host=localhost_ -. _INFO GridExec TASK_DEFINITION_ -. _WARN RemoteConfiguration Find: http://140.221.8.62:38260_ -. _INFO AbstractStreamKarajanChannel$Multiplexer Multiplexer 0 started_ -. _INFO AbstractStreamKarajanChannel$Multiplexer (0) Scheduling SC-null for addition_ -. _INFO AbstractStreamKarajanChannel Channel configured_ -. _INFO MetaChannel MetaChannel: 651528505[1478354072: {}] -> null.bind -> SC-null_ -. _INFO ReadBuffer Will ask for 1 buffers for a size of 6070_ -. _INFO ThrottleManager O maxBuffers=512, crtBuffers=0, allowedTransfers=256, active=0, suspended=0_ -. _INFO ThrottleManager mem=113.54 MB, heap=482.88 MB, maxHeap=5.21 GB_ -. _INFO ThrottleManager I maxBuffers=512, crtBuffers=0, allowedTransfers=256, active=0, suspended=0_ -. _INFO PerformanceDiagnosticInputStream [MEM] Heap total: 482.88 MB, Heap used: 118.58 MB_ -Heap sizes for performance -. _INFO vdl:execute END_SUCCESS thread=0-8-0 tr=getsite_ -The job ended successfully -. _INFO WeightedHostScoreScheduler CONTACT_SELECTED host=localhost, score=99.854_ -. _ -//// Deleted: trunk/docs/userguide/mappers =================================================================== --- trunk/docs/userguide/mappers 2014-01-08 21:57:59 UTC (rev 7461) +++ trunk/docs/userguide/mappers 2014-01-08 22:04:50 UTC (rev 7462) @@ -1,898 +0,0 @@ -Mappers -~~~~~~~ -When a DSHandle represents a data file (or container of datafiles), it -is associated with a mapper. The mapper is used to identify which files -belong to that DSHandle. - -A dataset's physical representation is declared by a mapping descriptor, -which defines how each element in the dataset's logical schema is stored -in, and fetched from, physical structures such as directories, files, -and remote servers. - -Mappers are parameterized to take into account properties such as -varying dataset location. In order to access a dataset, we need to know -three things: its type, its mapping, and the value(s) of any -parameter(s) associated with the mapping descriptor. For example, if we -want to describe a dataset, of type imagefile, and whose physical -representation is a file called "file1.bin" located at -"/home/yongzh/data/", then the dataset might be declared as follows: - ----- -imagefile f1 ----- - -The above example declares a dataset called f1, which uses a single file -mapper to map a file from a specific location. - -Swift has a simplified syntax for this case, since -single_file_mapper is frequently used: - ----- -binaryfile f1<"/home/yongzh/data/file1.bin"> ----- - -Swift comes with a number of mappers that handle common mapping -patterns. These are documented in the mappers section of this -guide. - -More technical details about Swift script -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -The syntax of Swift script has a superficial resemblance to C and Java. -For example, { and } characters are used to enclose blocks of statements. - -A Swift script consists of a number of statements. Statements may -declare types, procedures and variables, assign values to variables, and -express operations over arrays. - - -Variables -^^^^^^^^^ -Variables in Swift scripts are declared to be of a specific type. -Assignments to those variables must be data of that type. Swift script -variables are single-assignment - a value may be assigned to a variable -at most once. This assignment can happen at declaration time or later on -in execution. When an attempt to read from a variable that has not yet -been assigned is made, the code performing the read is suspended until -that variable has been written to. This forms the basis for Swift's -ability to parallelise execution - all code will execute in parallel -unless there are variables shared between the code that cause sequencing. - - -Variable Declarations -^^^^^^^^^^^^^^^^^^^^^ -Variable declaration statements declare new variables. They can -optionally assign a value to them or map those variables to on-disk files. - -Declaration statements have the general form: - ----- -typename variablename ( | = initialValue ) ; ----- - -The format of the mapping expression is defined in the Mappers section. -initialValue may be either an expression or a procedure call that -returns a single value. - -Variables can also be declared in a multivalued-procedure statement, -described in another section. - - -Assignment Statements -^^^^^^^^^^^^^^^^^^^^^ -Assignment statements assign values to previously declared variables. -Assignments may only be made to variables that have not already been -assigned. Assignment statements have the general form: - ----- -variable = value; ----- - -where value can be either an expression or a procedure call that returns -a single value. - -Variables can also be assigned in a multivalued-procedure statement, -described in another section. - - -Procedures -~~~~~~~~~~ -There are two kinds of procedure: An atomic procedure, which describes -how an external program can be executed; and compound procedures which -consist of a sequence of Swift script statements. - -A procedure declaration defines the name of a procedure and its input -and output parameters. Swift script procedures can take multiple inputs -and produce multiple outputs. Inputs are specified to the right of the -function name, and outputs are specified to the left. For example: - ----- -(type3 out1, type4 out2) myproc (type1 in1, type2 in2) ----- - -The above example declares a procedure called myproc, which has two -inputs in1 (of type type1) and in2 (of type type2) and two -outputs out1 (of type type3) and out2 (of type type4). - -A procedure input parameter can be an optional parameter in which case -it must be declared with a default value. When calling a procedure, both -positional parameter and named parameter passings can be passed, -provided that all optional parameters are declared after the required -parameters and any optional parameter is bound using keyword parameter -passing. For example, if myproc1 is defined as: - ----- -(binaryfile bf) myproc1 (int i, string s="foo") ----- - -Then that procedure can be called like this, omitting the optional ----- -parameter s: -binaryfile mybf = myproc1(1); ----- - -or like this supplying a value for the optional parameter s: ----- -binaryfile mybf = myproc1 (1, s="bar"); ----- - -Atomic procedures -^^^^^^^^^^^^^^^^^ -An atomic procedure specifies how to invoke an external executable -program, and how logical data types are mapped to command line arguments. - -Atomic procedures are defined with the app keyword: - ----- -app (binaryfile bf) myproc (int i, string s="foo") { - myapp i s @filename(bf); -} ----- - -which specifies that myproc invokes an executable called myapp, -passing the values of i, s and the filename of bf as command line -arguments. - - -Compound procedures -^^^^^^^^^^^^^^^^^^^ -A compound procedure contains a set of Swift script statements: - ----- -(type2 b) foo_bar (type1 a) { - type3 c; - c = foo(a); // c holds the result of foo - b = bar(c); // c is an input to bar -} ----- - -Control Constructs -~~~~~~~~~~~~~~~~~~ -Swift script provides if, switch, foreach, and iterate -constructs, with syntax and semantics similar to comparable constructs -in other high-level languages. - - -foreach -^^^^^^^ -The foreach construct is used to apply a block of statements to each -element in an array. For example: - ----- -check_order (file a[]) { - foreach f in a { - compute(f); - } -} ----- - -foreach statements have the general form: - ----- -foreach controlvariable (,index) in expression { - statements -} ----- - -The block of statements is evaluated once for each element in -expression which must be an array, with controlvariable set to the -corresponding element and index (if specified) set to the integer -position in the array that is being iterated over. - - -if -^^ -The if statement allows one of two blocks of statements to be -executed, based on a boolean predicate. if statements generally have -the form: - ----- -if(predicate) { - statements -} else { - statements -} ----- - -where predicate is a boolean expression. - - -switch -^^^^^^ - -switch expressions allow one of a selection of blocks to be chosen -based on the value of a numerical control expression. switch -statements take the general form: - ----- -switch(controlExpression) { - case n1: - statements2 - case n2: - statements2 - [...] - default: - statements -} ----- - -The control expression is evaluated, the resulting numerical value used -to select a corresponding case, and the statements belonging to that -case block are evaluated. If no case corresponds, then the statements -belonging to the default block are evaluated. - -Unlike C or Java switch statements, execution does not fall through to -subsequent case blocks, and no break statement is necessary at the -end of each block. - -Following is an example of a switch expression in Swift: - ----- -int score=60; -switch (score){ -case 100: - tracef("%s\n", "Bravo!"); -case 90: - tracef("%s\n", "very good"); -case 80: - tracef("%s\n", "good"); -case 70: - tracef("%s\n", "fair"); -default: - tracef("%s\n", "unknown grade"); - } ----- - -iterate -^^^^^^^ -iterate expressions allow a block of code to be evaluated repeatedly, -with an iteration variable being incremented after each iteration. - -The general form is: - ----- -iterate var { - statements; -} until (terminationExpression); ----- - -Here _var_ is the iteration variable. Its initial value is 0. After each iteration, -but before _terminationExpression_ is evaluated, the iteration variable is incremented. -This means that if the termination expression is a function of only the iteration variable, -the body will never be executed while the termination expression is true. - -Example: - ----- -iterate i { - trace(i); // will print 0, 1, and 2 -} until (i == 3); ----- - -Variables declared inside the body of _iterate_ can be used in the termination expression. -However, their values will reflect the values calculated as part of the last invocation -of the body, and may not reflect the incremented value of the iteration variable: - ----- -iterate i { - trace(i); - int j = i; // will print 0, 1, 2, and 3 -} until (j == 3); ----- - -Operators -~~~~~~~~~ -The following infix operators are available for use in Swift script -expressions. - -[options="header, autowidth"] -|================= -|operator|purpose -|+|numeric addition; string concatenation -|-|numeric subtraction -|*|numeric multiplication -|/|floating point division -|%/|integer division -|%%|integer remainder of division -|== !=|comparison and not-equal-to -|< > <= >=|numerical ordering -|&& \|\||boolean and, or -|!|boolean not -|================= - -Global constants -~~~~~~~~~~~~~~~~ - -At the top level of a Swift script program, the global modified may be -added to a declaration so that it is visible throughout the program, -rather than only at the top level of the program. This allows global -constants (of any type) to be defined. (since Swift 0.10) - - -Imports -~~~~~~~ -The import directive can be used to import definitions from another -Swift file. - -For example, a Swift script might contain this: - ----- -import "defs"; -file f; ----- - -which would import the content of defs.swift: - ----- -type file; ----- - -Imported files are read from two places. They are either read from -the path that is specified from the import command, such as: ----- -import "definitions/file/defs"; ----- - -or they are read from the environment variable SWIFT_LIB. This -environment variable is used just like the PATH environment -variable. For example, if the command below was issued to the bash -shell: ----- -export SWIFT_LIB=${HOME}/Swift/defs:${HOME}/Swift/functions ----- -then the import command will check for the file defs.swift in both -"$\{HOME}/Swift/defs" and "$\{HOME}/Swift/functions" first before trying -the path that was specified in the import command. - -Other valid imports: ----- -import "../functions/func" -import "/home/user/Swift/definitions/defs" ----- - -There is no requirement that a module is imported only once. If a module -is imported multiple times, for example in different files, then Swift -will only process the imports once. - -Imports may contain anything that is valid in a Swift script, -including the code that causes remote execution. - -Mappers -------- -Mappers provide a mechanism to specify the layout of mapped datasets on -disk. This is needed when Swift must access files to transfer them to -remote sites for execution or to pass to applications. - -Swift provides a number of mappers that are useful in common cases. This -section details those mappers. For more complex cases, it is -possible to write application-specific mappers in Java and use them -within a Swift script. - - -The single file mapper -~~~~~~~~~~~~~~~~~~~~~~ -The single_file_mapper maps a single physical file to a dataset. - -[options="header, autowidth"] -|======================= -|Swift variable|Filename -|f|myfile -|f [0]|INVALID -|f.bar|INVALID -|======================= - -[options="header, autowidth"] -|================= -|parameter|meaning -|file|The location of the physical file including path and file name. -|================= - -Example: ----- -file f ; ----- - -There is a simplified syntax for this mapper: ----- -file f <"plot_outfile_param">; ----- - -The simple mapper -~~~~~~~~~~~~~~~~~ -The simple_mapper maps a file or a list of files into an array by -prefix, suffix, and pattern. If more than one file is matched, each of -the file names will be mapped as a subelement of the dataset. - -[options="header, autowidth"] -|==================== -|Parameter|Meaning -|location|A directory that the files are located. -|prefix|The prefix of the files -|suffix|The suffix of the files, for instance: ".txt" -|padding| The number of digits used to uniquely identify the mapped file. This is an optional parameter which defaults to 4. -|pattern|A UNIX glob style pattern, for instance: "\*foo*" would match -all file names that contain foo. When this mapper is used to specify -output filenames, pattern is ignored. -|==================== - ----- -type file; -file f ; ----- - -The above maps all filenames that start with foo and have an extension -.txt into file f. - -[options="header, autowidth"] -|================ -|Swift variable|Filename -|f|foo.txt -|================= ----- -type messagefile; - -(messagefile t) greeting(string m) {. - app { - echo m stdout=@filename(t); - } -} - -messagefile outfile ; - -outfile = greeting("hi"); ----- - -This will output the string 'hi' to the file foo.txt. - -The simple_mapper can be used to map arrays. It will map the array -index into the filename between the prefix and suffix. - ----- -type messagefile; - -(messagefile t) greeting(string m) { - app { - echo m stdout=@filename(t); - } -} - -messagefile outfile[] ; - -outfile[0] = greeting("hello"); -outfile[1] = greeting("middle"); -outfile[2] = greeting("goodbye"); ----- - -[options="header, autowidth"] -|======================= -|Swift variable|Filename -|outfile[0]|baz00.txt -|outfile[1]|baz01.txt -|outfile[2]|baz02.txt -|======================= - -simple_mapper can be used to map structures. It will map the name of -the structure member into the filename, between the prefix and the suffix. - ----- -type messagefile; - -type mystruct { - messagefile left; - messagefile right; -}; - -(messagefile t) greeting(string m) { - app { - echo m stdout=@filename(t); - } -} - -mystruct out ; - -out.left = greeting("hello"); -out.right = greeting("goodbye"); ----- - -This will output the string "hello" into the file qux.left.txt and the -string "goodbye" into the file qux.right.txt. - -[options="header, autowidth"] -|======================= -|Swift variable|Filename -|out.left|quxleft.txt -|out.right|quxright.txt -|======================= - -concurrent mapper -~~~~~~~~~~~~~~~~~ -The concurrent_mapper is almost the same as the simple mapper, except that -it is used to map an output file, and the filename generated will -contain an extract sequence that is unique. This mapper is the default -mapper for variables when no mapper is specified. - - -[options="header, autowidth"] -|================= -|Parameter|Meaning -|location|A directory that the files are located. -|prefix|The prefix of the files -|suffix|The suffix of the files, for instance: ".txt" -pattern A UNIX glob style pattern, for instance: "\*foo*" would match -all file names that contain foo. When this mapper is used to specify -output filenames, pattern is ignored. -|================= - -Example: ----- -file f1; -file f2 ; ----- -The above example would use concurrent mapper for f1 and f2, and -generate f2 filename with prefix "foo" and extension ".txt" - - -File system mapper -~~~~~~~~~~~~~~~~~~ -The filesys_mapper is similar to the simple mapper, but maps a file or a -list of files to an array. Each of the filename is mapped as an element -in the array. The order of files in the resulting array is not defined. - -TODO: note on difference between location as a relative vs absolute path -w.r.t. staging to remote location - as mihael said: It's because you -specify that location in the mapper. Try location="." instead of -location="/sandbox/..." - -[options="header, autowidth"] -|====================== -|parameter|meaning -|location|The directory where the files are located. -|prefix|The prefix of the files -|suffix|The suffix of the files, for instance: ".txt" -|pattern|A UNIX glob style pattern, for instance: "\*foo*" would match -all file names that contain foo. -|====================== - -Example: ----- -file texts[] ; ----- - -The above example would map all filenames that start with "foo" and -have an extension ".txt" into the array texts. For example, if the -specified directory contains files: foo1.txt, footest.txt, -foo__1.txt, then the mapping might be: - -[options="header, autowidth"] -|================= -|Swift variable|Filename -|texts[0]|footest.txt -|texts[1]|foo1.txt -|texts[2]|foo__1.txt -|================= - - - -fixed array mapper -~~~~~~~~~~~~~~~~~~ -The fixed_array_mapper maps from a string that contains a list of -filenames into a file array. - -[options="header, autowidth"] -|================= -|parameter|Meaning -|files|A string that contains a list of filenames, separated by space, -comma or colon -|================= - -Example: - ----- -file texts[] ; ----- - -would cause a mapping like this: - -[options="header, autowidth"] -|======== -|Swift variable|Filename -|texts[0]|file1.txt -|texts[1]|fileB.txt -|texts[2]|file3.txt -|======== - -array mapper -~~~~~~~~~~~~ -The array_mapper maps from an array of strings into a file - -[options="header, autowidth"] -|============ -|parameter|meaning -|files|An array of strings containing one filename per element -|============== - -Example: ----- -string s[] = [ "a.txt", "b.txt", "c.txt" ]; - -file f[] ; ----- - -This will establish the mapping: - -[options="header, autowidth"] -|========== -|Swift variable|Filename -|f[0]|a.txt -|f[1]|b.txt -|f[2]|c.txt -|========== - -regular expression mapper -~~~~~~~~~~~~~~~~~~~~~~~~~ -The regexp_mapper transforms one file name to another using regular -expression matching. - -[options="header, autowidth"] -|========== -|parameter|meaning -|source|The source file name -|match|Regular expression pattern to match, use |()| to match whatever -regular expression is inside the parentheses, and indicate the start and -end of a group; the contents of a group can be retrieved with the -|\\number|special sequence (two backslashes are needed because the -backslash is an escape sequence introducer) -|transform|The pattern of the file name to transform to, use \number to -reference the group matched. -|========== - -Example: ----- -file s <"picture.gif">; -file f ; ----- - -This example transforms a file ending gif into one ending jpg and -maps that to a file. - -[options="header, autowidth"] -|=========== -|Swift variable|Filename -|f|picture.jpg -|============= - -structured regular expression mapper -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - -The structured_regexp_mapper is similar to the regexp_mapper with the only -difference that it can be applied to arrays while the regexp_mapper cannot. - -[options="header, autowidth"] -|========== -|parameter|meaning -|source|The source file name -|match|Regular expression pattern to match, use |()| to match whatever -regular expression is inside the parentheses, and indicate the start and -end of a group; the contents of a group can be retrieved with the -|\\number|special sequence (two backslashes are needed because the -backslash is an escape sequence introducer) -|transform|The pattern of the file name to transform to, use \number to -reference the group matched. -|========== - -Example: ----- -file s[] ; - -file f[] ; ----- - -This example transforms all files in a list that end in gif to end in jpg and maps -the list to those files. - -csv mapper -~~~~~~~~~~ -The csv_mapper maps the content of a CSV (comma-separated value) file -into an array of structures. The dataset type needs to be correctly -defined to conform to the column names in the file. For instance, if the -file contains columns: name age GPA then the type needs to have member -elements like this: - ----- -type student { - file name; - file age; - file GPA; -} ----- - -If the file does not contain a header with column info, then the column -names are assumed as column1, column2, etc. - -[options="header, autowidth"] -|============ -|Parameter|Meaning -|file|The name of the CSV file to read mappings from. -|header|Whether the file has a line describing header info; default is |true| -|skip|The number of lines to skip at the beginning (after header line); -default is 0. -|hdelim|Header field delimiter; default is the value of the |delim| parameter -|delim|Content field delimiters; defaults are space, tab and comma -|============= - -Example: ----- -student stus[] ; ----- - -The above example would read a list of student info from file -"stu_list.txt" and map them into a student array. By default, the file -should contain a header line specifying the names of the columns. If -stu_list.txt contains the following: - ----- -name,age,gpa -101-name.txt, 101-age.txt, 101-gpa.txt -name55.txt, age55.txt, age55.txt -q, r, s ----- - -then some of the mappings produced by this example would be: - -[options="header, autowidth"] -|========= -|stus[0].name|101-name.txt -|stus[0].age|101-age.txt -|stus[0].gpa|101-gpa.txt -|stus[1].name|name55.txt -|stus[1].age|age55.txt -|stus[1].gpa|gpa55.txt -|stus[2].name|q -|stus[2].age|r -|stus[2].gpa|s -|========= - -external mapper -~~~~~~~~~~~~~~~ -The external mapper, ext maps based on the output of a supplied Unix -executable. - -[option="header, autowidth"] -|============= -|parameter|meaning -|exec|The name of the executable (relative to the current directory, if -an absolute path is not specified) -|*|Other parameters are passed to the executable prefixed with a - symbol -|============== - -The output (stdout) of the executable should consist of two columns of data, -separated by a space. The first column should be the path of the mapped -variable, in Swift script syntax (for example [2] means the 2nd element of an -array) or the symbol $ to represent the root of the mapped variable. The -following table shows the symbols that should appear in the first column -corresponding to the mapping of different types of swift constructs such as -scalars, arrays and structs. - -[option="header, autowidth"] -|============= -|Swift construct|first column|second column -|scalar|$|file_name -|anarray[]|[]|file_name -|2dimarray[][]|[][]|file_name -|astruct.fld|fld|file_name -|astructarray[].fldname|[].fldname|file_name -|============== - -Example: With the following in mapper.sh, - ----- -#!/bin/bash -echo "[2] qux" -echo "[0] foo" -echo "[1] bar" ----- - -then a mapping statement: - ----- -student stus[] ; ----- - -would map - -[options="header, autowidth"] -|============ -|Swift variable|Filename -|stus[0]|foo -|stus[1]|bar -|stus[2]|qux -|=========== - -Advanced Example: The following mapper.sh is an advanced example of an external -mapper that maps a two-dimensional array to a directory of files. The files in -the said directory are identified by their names appended by a number between -000 and 099. The first index of the array maps to the first part of the -filename while the second index of the array maps to the second part of the -filename. - ----- -#!/bin/sh - -#take care of the mapper args -while [ $# -gt 0 ]; do - case $1 in - -location) location=$2;; - -padding) padding=$2;; - -prefix) prefix=$2;; - -suffix) suffix=$2;; - -mod_index) mod_index=$2;; - -outer_index) outer_index=$2;; - *) echo "$0: bad mapper args" 1>&2 - exit 1;; - esac - shift 2 -done - -for i in `seq 0 ${outer_index}` -do - for j in `seq -w 000 ${mod_index}` - do - fj=`echo ${j} | awk '{print $1 +0}'` #format j by removing leading zeros - echo "["${i}"]["${fj}"]" ${location}"/"${prefix}${j}${suffix} - done -done ----- - -The mapper definition is as follows: - ----- -file_dat dat_files[][] < ext; - exec="mapper.sh", - padding=3, - location="output", - prefix=@strcat( str_root, "_" ), - suffix=".dat", - outer_index=pid, - mod_index=n >; - ----- - -Assuming there are 4 files with name aaa, bbb, ccc, ddd and a mod_index of 10, -we will have 4x10=40 files mapped to a two-dimensional array in the following -pattern: - -[options="header, autowidth"] -|============ -|Swift variable|Filename -|stus[0][0]|output/aaa_000.dat -|stus[0][1]|output/aaa_001.dat -|stus[0][2]|output/aaa_002.dat -|stus[0][3]|output/aaa_003.dat -|...|... -|stus[0][9]|output/aaa_009.dat -|stus[1][0]|output/bbb_000.dat -|stus[1][1]|output/bbb_001.dat -|...|... -|stus[3][9]|output/ddd_009.dat -|=========== Modified: trunk/docs/userguide/overview =================================================================== --- trunk/docs/userguide/overview 2014-01-08 21:57:59 UTC (rev 7461) +++ trunk/docs/userguide/overview 2014-01-08 22:04:50 UTC (rev 7462) @@ -1,10 +1,5 @@ Overview -------- -This manual provides reference material for Swift: the Swift -language and the Swift runtime system. For introductory material, -consult the -http://www.ci.uchicago.edu/swift/guides/trunk/tutorial/tutorial.html[Swift tutorial]. - Swift is a data-flow oriented coarse grained scripting language that supports dataset typing and mapping, dataset iteration, conditional branching, and procedural composition. Deleted: trunk/docs/userguide/reliability_mechanisms =================================================================== --- trunk/docs/userguide/reliability_mechanisms 2014-01-08 21:57:59 UTC (rev 7461) +++ trunk/docs/userguide/reliability_mechanisms 2014-01-08 22:04:50 UTC (rev 7462) @@ -1,101 +0,0 @@ -Reliability mechanisms ----------------------- -This section details reliabilty mechanisms in Swift: retries, restarts -and replication. - -Retries -~~~~~~~ -If an application procedure execution fails, Swift will attempt that -execution again repeatedly until it succeeds, up until the limit defined -in the execution.retries configuration property. - -Site selection will occur for retried jobs in the same way that it -happens for new jobs. Retried jobs may run on the same site or may run -on a different site. - -If the retry limit execution.retries is reached for an application -procedure, then that application procedure will fail. This will cause -the entire run to fail - either immediately (if the lazy.errors -property is false) or after all other possible work has been attempted -(if the lazy.errors property is true). - -With or without lazy errors, each app is re-tried -times before it is considered failed for good. An app that has failed -but still has retries left will appear as "Failed but can retry". - -Without lazy errors, once the first (time-wise) app has run out of -retries, the whole run is stopped and the error reported. - -With lazy errors, if an app fails after all retries, its outputs are -marked as failed. All apps that depend on failed outputs will also fail -and their outputs marked as failed. All apps that have non-failed -outputs will continue to run normally until everything that can proceed -completes. - -For example, if you have: - ----- -foreach x in [1:1024] { - app(x); -} ----- - -... and if the first started app fails, all the other ones can still -continue, and if they don't otherwise fail, the run will only terminate -when all 1023 of them will complete. - -So basically the idea behind lazy errors is to run EVERYTHING that can -safely be run before stopping. - -Some types of errors (such as internal swift errors happening in an app -thread) will still stop the run immediately even in lazy errors mode. -But we all know there are no such things as internal swift errors :) - - - -Restarts -~~~~~~~~ -If a run fails, Swift can resume the program from the point of failure. -When a run fails, a restart log file will be left behind in a file named -using the unique job ID and a .rlog extension. This restart log can -then be passed to a subsequent Swift invocation using the -resume -parameter. Swift will resume execution, avoiding execution of -invocations that have previously completed successfully. The Swift -source file and input data files should not be modified between runs. - -Every run creates a restart log file with a named composed of the file -name of the workflow being executed, an invocation ID, a numeric ID, and -the .rlog extension. For example, example.swift, when executed, -could produce the following restart log file: -example-ht0adgi315l61.0.rlog. Normally, if the run completes -successfully, the restart log file is deleted. If however the workflow -fails, swift can use the restart log file to continue execution from a -point before the failure occurred. In order to restart from a restart -log file, the -resume logfile argument can be used after the -Swift script file name. Example: - ----- -$ swift -resume example-ht0adgi315l61.0.rlog example.swift. ----- - -Replication -~~~~~~~~~~~ -When an execution job has been waiting in a site queue for a certain -period of time, Swift can resubmit replicas of that job (up to the limit -defined in the replication.limit configuration property). When any of -those jobs moves from queued to active state, all of the other replicas -will be cancelled. - -This is intended to deal with situations where some sites have a -substantially longer (sometimes effectively infinite) queue time than -other sites. Selecting those slower sites can cause a very large delay -in overall run time. - -Replication can be enabled by setting the replication.enabled -configuration property to true. The maximum number of replicas that -will be submitted for a job is controlled by the replication.limit -configuration property. - -When replication is enabled, Swift will also enforce the maxwalltime -profile setting for jobs as documented in the profiles section. - Deleted: trunk/docs/userguide/site_catalog =================================================================== --- trunk/docs/userguide/site_catalog 2014-01-08 21:57:59 UTC (rev 7461) +++ trunk/docs/userguide/site_catalog 2014-01-08 22:04:50 UTC (rev 7462) @@ -1,186 +0,0 @@ -The Site Catalog - sites.xml ----------------------------- -The site catalog lists details of each site that Swift can use. The -default file contains one entry for local execution, and a large number -of commented-out example entries for other sites. - -By default, the site catalog is stored in etc/sites.xml. This path can -be overridden with the sites.file configuration property, either in -the Swift configuration file or on the command line. - -The sites file is formatted as XML. It consists of elements, -one for each site that Swift will use. - -Pool element -~~~~~~~~~~~~ -Each pool element must have a handle attribute, giving a symbolic -name for the site. This can be any name, but must correspond to entries -for that site in the transformation catalog. - -Optionally, the gridlaunch attribute can be used to specify the path -to kickstart on the site. - -Each pool must specify a file transfer method, an execution method and -a remote working directory. Optionally, profile settings can -be specified. - -File transfer method -~~~~~~~~~~~~~~~~~~~~ -Transfer methods are specified with either the element or -the element. - -To use gridftp or local filesystem copy, use the element: - ----- - ----- - -The url attribute may specify a GridFTP server, using the gsiftp URI -scheme; or it may specify that filesystem copying will be used (which -assumes that the site has access to the same filesystem as the -submitting machine) using the URI local://localhost. - -Filesystem access using scp (the SSH copy protocol) can be specified -using the element: - ----- - ----- - -For additional ssh configuration information, see the ssh execution -provider documentation below. - -Filesystem access using CoG coasters can be also be -specified using the element. More detail about -configuring that can be found in the CoG coasters section. - -Execution method -~~~~~~~~~~~~~~~~ -Execution methods may be specified either with the or - element. - -The element can be used to specify execution through -GRAM2. For example, - ----- - ----- -The universe attribute should always be set to vanilla. The url -attribute should specify the name of the GRAM2 gatekeeper host, and the -name of the jobmanager to use. The major attribute should always be set -to 2. - -The element can be used to specify execution through other -execution providers: - -To use GRAM4, specify the gt4 provider. For example: - ----- - ----- - -The url attribute should specify the GRAM4 submission site. The -jobmanager attribute should specify which GRAM4 jobmanager will be used. - -For local execution, the local provider should be used, like this: - ----- - ----- - -For PBS execution, the pbs provider should be used: - ----- - ----- - -The GLOBUS::queue profile key can be used to -specify which PBS queue jobs will be submitted to. - -For execution through a local Condor installation, the condor provider -should be used. This provider can run jobs either in the default vanilla -universe, or can use Condor-G to run jobs on remote sites. - -When running locally, only the element needs to be specified: - ----- - ----- - -When running with Condor-G, it is necessary to specify the Condor grid -universe and the contact string for the remote site. For example: - ----- - - grid - gt2 belhaven-1.renci.org/jobmanager-fork ----- - -For execution through SSH, the ssh provider should be used: - ----- - ----- -with configuration made in ~/.ssh/auth.defaults with the string -'www11.i2u2.org' changed to the appropriate host name: - ----- -www11.i2u2.org.type=key -www11.i2u2.org.username=hategan -www11.i2u2.org.key=/home/mike/.ssh/i2u2portal -www11.i2u2.org.passphrase=XXXX ----- - -For execution using the CoG Coaster mechanism, the coaster -provider should be used: - ----- - ----- - -More details about configuration of coasters can be found in the section -on coasters. - -Work directory -~~~~~~~~~~~~~~ -The workdirectory element specifies where on the site files can be -stored. - ----- -/tmp/swift.workdir ----- - -This directory must be accessible through the specified transfer mechanism and -also mounted on all worker nodes that will be used for execution. A shared -cluster scratch filesystem is appropriate for this. Note that you need to -specify _absolute pathname_ for this field. - - -Scratch -~~~~~~~ - -The scratch element takes in a value of a directory on a shared filesystem. For example: - ----- -/work/01739/ketan/lab/swift/myscratch ----- - -The scratch element specifies that the underlying Swift wrapper will copy the -input files into the scratch directory and the job will be run from that -directory. In the absence of scratch tag, Swift will run the job from -workdirectory by creating symlinks to input files in a shared directory. - -Profiles -~~~~~~~~ -Profile keys can be specified using the element. -For example: - ----- -fast ----- - -The site catalog format is an evolution of the VDS site catalog format -which is documented here -. - Deleted: trunk/docs/userguide/transformation_catalog =================================================================== --- trunk/docs/userguide/transformation_catalog 2014-01-08 21:57:59 UTC (rev 7461) +++ trunk/docs/userguide/transformation_catalog 2014-01-08 22:04:50 UTC (rev 7462) @@ -1,55 +0,0 @@ -The Transformation Catalog - tc -------------------------------- -The transformation catalog lists where application executables are -located on execution sites. - -By default, the site catalog is stored in etc/tc.data. This path can -be overridden with the tc.file configuration property, either in the -Swift configuration file or on the command line. - -The format is one line per executable per site, with fields separated by space or tab. - -Some example entries: ----- -localhost cat /bin/cat null null null -localhost vasp /home/ketan/runvasp.sh null null null -fusion echo /bin/echo INSTALLED INTEL32::LINUX null -TGUC touch /usr/bin/touch INSTALLED INTEL32::LINUX GLOBUS::maxwalltime="0:1" ----- - -The fields are: site, transformation name, executable path, installation -status, platform, and profile entries. - -The site field should correspond to a site name listed in the sites catalog. - -The transformation name should correspond to the transformation name -used in a Swift script app procedure. - -The executable path should specify where the executable is -located on that site. - -The installation status and platform fields are not used. Set them to -INSTALLED and INTEL32::LINUX respectively. Alternatively, they could be set to null. - -The profiles field should be set to null if no profile entries are to -be specified. - -Setting Environment Variables -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -It is often useful to set environment variables when running an application. -This can be accomplished using *env* in the profile entry. For example, -the following application sets an environment variable called R_LIBS to -/home/user/R_libs. - ------ -localhost R /usr/bin/R INSTALLED INTEL32::LINUX env::R_LIBS=/home/user/r_libs ------ - -Setting Multiple Profiles -~~~~~~~~~~~~~~~~~~~~~~~~~ -Multiple profile entries can be added by using a semicolon. The example below -sets two environment variables: R_LIBS and R_HOME. - ------ -localhost R /usr/bin/R INSTALLED INTEL32::LINUX env::R_LIBS=/home/user/r_libs;env::R_HOME=/home/user/r ------ Modified: trunk/docs/userguide/userguide.txt =================================================================== --- trunk/docs/userguide/userguide.txt 2014-01-08 21:57:59 UTC (rev 7461) +++ trunk/docs/userguide/userguide.txt 2014-01-08 22:04:50 UTC (rev 7462) @@ -3,41 +3,16 @@ :toc: :icons: -:website: http://www.ci.uchicago.edu/swift/guides/userguide.php :numbered: include::overview[] +include::gettingStarted[] + include::language[] -include::mappers[] +include::configuration[] -include::commands[] +include::debugging[] -include::app_procedures[] - -include::configuration_properties[] - -include::profiles[] - -include::site_catalog[] - -include::transformation_catalog[] - -include::build_options[] - -include::kickstart[] - -include::reliability_mechanisms[] - -include::clustering[] - -include::coasters[] - -include::howto_tips[] - -include::cdm[] - -include::log-processing[] - -link:http://www.ci.uchicago.edu/swift/docs/index.php[home] +link:http://swift-lang.org/docs/index.php[home] From davidk at ci.uchicago.edu Wed Jan 8 16:13:42 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 08 Jan 2014 22:13:42 -0000 Subject: [Swift-commit] r7463 - branches/release-0.95/docs/userguide Message-ID: <20140108221342.0A71B9CFD2@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-08 16:13:41 -0600 (Wed, 08 Jan 2014) New Revision: 7463 Added: branches/release-0.95/docs/userguide/configuration branches/release-0.95/docs/userguide/debugging branches/release-0.95/docs/userguide/gettingStarted Removed: branches/release-0.95/docs/userguide/app_procedures branches/release-0.95/docs/userguide/build_options branches/release-0.95/docs/userguide/clustering branches/release-0.95/docs/userguide/commands branches/release-0.95/docs/userguide/configuration_properties branches/release-0.95/docs/userguide/howto_tips branches/release-0.95/docs/userguide/images branches/release-0.95/docs/userguide/kickstart branches/release-0.95/docs/userguide/log-processing branches/release-0.95/docs/userguide/mappers branches/release-0.95/docs/userguide/reliability_mechanisms branches/release-0.95/docs/userguide/site_catalog branches/release-0.95/docs/userguide/transformation_catalog Modified: branches/release-0.95/docs/userguide/language branches/release-0.95/docs/userguide/overview branches/release-0.95/docs/userguide/userguide.txt Log: Updated userguide Deleted: branches/release-0.95/docs/userguide/app_procedures =================================================================== --- branches/release-0.95/docs/userguide/app_procedures 2014-01-08 22:04:50 UTC (rev 7462) +++ branches/release-0.95/docs/userguide/app_procedures 2014-01-08 22:13:41 UTC (rev 7463) @@ -1,568 +0,0 @@ -Executing app procedures ------------------------- -This section describes how Swift executes app procedures, and -requirements on the behaviour of application programs used in app -procedures. These requirements are primarily to ensure that the Swift -can run your application in different places and with the various fault -tolerance mechanisms in place. - - -Mapping of app semantics into unix process execution semantics -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - -This section describes how an app procedure invocation is translated -into a (remote) unix process execution. It does not describe the -mechanisms by which Swift performs that translation; that is described -in the next section. - -In this section, this example Swift script is used for reference: - ----- -type file; - -app (file o) count(file i) { - wc @i stdout=@o; -} - -file q <"input.txt">; -file r <"output.txt">; ----- - -The executable for wc will be looked up in tc.data. - -This unix executable will then be executed in some application -procedure workspace. This means: - -Each application procedure workspace will have an application workspace -directory. (TODO: can collapse terms application procedure workspace -and application workspace directory ? - -This application workspace directory will not be shared with any other -application procedure execution attempt; all application procedure -execution attempts will run with distinct application procedure -workspaces. (for the avoidance of doubt: If a Swift script procedure -invocation is subject to multiple application procedure execution -attempts (due to Swift-level restarts, retries or replication) then each -of those application procedure execution attempts will be made in a -different application procedure workspace. ) - -The application workspace directory will be a directory on a POSIX -filesystem accessible throughout the application execution by the -application executable. - -Before the application executable is executed: - - * The application workspace directory will exist. - - * The input files will exist inside the application workspace - directory (but not necessarily as direct children; there may be - subdirectories within the application workspace directory). - - * The input files will be those files mapped to input parameters - of the application procedure invocation. (In the example, this - means that the file input.txt will exist in the application - workspace directory) - - * For each input file dataset, it will be the case that @filename - or @filenames invoked with that dataset as a parameter will - return the path relative to the application workspace directory - for the file(s) that are associated with that dataset. (In the - example, that means that @i will evaluate to the path input.txt) - - * For each file-bound parameter of the Swift procedure invocation, - the associated files (determined by data type?) will always exist. - - * The input files must be treated as read only files. This may or - may not be enforced by unix file system permissions. They may or - may not be copies of the source file (conversely, they may be - links to the actual source file). - -During/after the application executable execution, the following must -be true: - - * If the application executable execution was successful (in the - opinion of the application executable), then the application - executable should exit with unix return code 0; if the - application executable execution was unsuccessful (in the opinion - of the application executable), then the application executable - should exit with unix return code not equal to 0. - - * Each file mapped from an output parameter of the Swift script - procedure call must exist. Files will be mapped in the same way as - for input files. - - * The output subdirectories will be precreated - before execution by Swift if defined within a Swift script such as the - location attribute of a mapper. App executables expect to make them if - they are referred to in the wrapper scripts. - - * Output produced by running the application executable on some - inputs should be the same no matter how many times, when or where - that application executable is run. 'The same' can vary depending - on application (for example, in an application it might be - acceptable for a PNG->JPEG conversion to produce different, - similar looking, output jpegs depending on the environment) - -Things to not assume: - - * Anything about the path of the application workspace directory - - * That either the application workspace directory will be deleted or - will continue to exist or will remain unmodified after execution - has finished - - * That files can be passed between application procedure - invocations through any mechanism except through files known to - Swift through the mapping mechanism (there is some exception here - for external datasets - there are a separate set of assertions - that hold for external datasets) - - * That application executables will run on any particular site of - those available, or than any combination of applications will run - on the same or different sites. - - -How Swift implements the site execution model -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -This section describes the implementation of the semantics described in -the previous section. - -Swift executes application procedures on one or more sites. - -Each site consists of: - - * worker nodes. There is some execution mechanism through which - the Swift client side executable can execute its wrapper script - on those worker nodes. This is commonly GRAM or Falkon or coasters. - - * a site-shared file system. This site shared filesystem is - accessible through some file transfer mechanism from the Swift - client side executable. This is commonly GridFTP or coasters. This - site shared filesystem is also accessible through the posix file - system on all worker nodes, mounted at the same location as seen - through the file transfer mechanism. Swift is configured with the - location of some site working directory on that site-shared file - system. - -There is no assumption that the site shared file system for one site is -accessible from another site. - -For each workflow run, on each site that is used by that run, a run -directory is created in the site working directory, by the Swift client -side. - -In that run directory are placed several subdirectories: - - * shared/ - site shared files cache - - * kickstart/ - when kickstart is used, kickstart record files for - each job that has generated a kickstart record. - - * info/ - wrapper script log files - - * status/ - job status files - - * jobs/ - application workspace directories (optionally placed - here - see below) - -Application execution looks like this: - -For each application procedure call: - -The Swift client side selects a site; copies the input files for that -procedure call to the site shared file cache if they are not already in -the cache, using the file transfer mechanism; and then invokes the -wrapper script on that site using the execution mechanism. - -The wrapper script creates the application workspace directory; places -the input files for that job into the application workspace directory -using either cp or ln -s (depending on a configuration option); -executes the application unix executable; copies output files from the -application workspace directory to the site shared directory using cp; -creates a status file under the status/ directory; and exits, -returning control to the Swift client side. Logs created during the -execution of the wrapper script are stored under the info/ directory. - -The Swift client side then checks for the presence of and deletes a -status file indicating success; and copies files from the site shared -directory to the appropriate client side location. - -The job directory is created (in the default mode) under the jobs/ -directory. However, it can be created under an arbitrary other path, -which allows it to be created on a different file system (such as a -worker node local file system in the case that the worker node has a -local file system). - -image:swift-site-model.png[] - -Technical overview of the Swift architecture --------------------------------------------- -This section attempts to provide a technical overview of the Swift -architecture. - -Execution layer -~~~~~~~~~~~~~~~ -The execution layer causes an application program (in the form of a unix -executable) to be executed either locally or remotely. - -The two main choices are local unix execution and execution through -GRAM. Other options are available, and user provided code can also be -plugged in. - -The kickstart utility can be used to capture environmental -information at execution time to aid in debugging and provenance capture. - - -Swift script language compilation layer -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -Step i: text to XML intermediate form parser/processor. parser written -in ANTLR - see resources/VDL.g. The XML Schema Definition (XSD) for the -intermediate language is in resources/XDTM.xsd. - -Step ii: XML intermediate form to Karajan workflow. Karajan.java - reads -the XML intermediate form. compiles to karajan workflow language - for -example, expressions are converted from Swift script syntax into Karajan -syntax, and function invocations become karajan function invocations -with various modifications to parameters to accomodate return parameters -and dataset handling. - - -Swift/karajan library layer -~~~~~~~~~~~~~~~~~~~~~~~~~~~ -Some Swift functionality is provided in the form of Karajan libraries -that are used at runtime by the Karajan workflows that the Swift -compiler generates. - - -Ways in which Swift can be extended ------------------------------------ -Swift is extensible in a number of ways. It is possible to add mappers -to accomodate different filesystem arrangements, site selectors to -change how Swift decides where to run each job, and job submission -interfaces to submit jobs through different mechanisms. - -A number of mappers are provided as part of the Swift release and -documented in the mappers section. New mappers can be -implemented in Java by implementing the org.griphyn.vdl.mapping.Mapper -interface. The Swift tutorial - contains a simple -example of this. - -Swift provides a default site selector, the Adaptive Scheduler. New site -selectors can be plugged in by implementing the -org.globus.cog.karajan.scheduler.Scheduler interface and modifying -libexec/scheduler.xml and etc/karajan.properties to refer to the new -scheduler. - -Execution providers and filesystem providers, which allow to Swift to -execute jobs and to stage files in and out through mechanisms such as -GRAM and GridFTP can be implemented as Java CoG kit providers. - - -Function reference ------------------- -This section details functions that are available for use in the -Swift scripting language. - - at arg -~~~~ -Takes a command line parameter name as a string parameter and an -optional default value and returns the value of that string parameter -from the command line. If no default value is specified and the command -line parameter is missing, an error is generated. If a default value is -specified and the command line parameter is missing, @arg will return -the default value. - -Command line parameters recognized by @arg begin with exactly one -hyphen and need to be positioned after the script name. - -For example: - ----- -trace(@arg("myparam")); -trace(@arg("optionalparam", "defaultvalue")); ----- - ----- -$ swift arg.swift -myparam=hello -Swift v0.3-dev r1674 (modified locally) - -RunID: 20080220-1548-ylc4pmda -Swift trace: defaultvalue -Swift trace: hello ----- - - at extractInt -~~~~~~~~~~~ - at extractInt(file) will read the specified file, parse an integer from -the file contents and return that integer. - - at extractFloat -~~~~~~~~~~~~~ -Similar to @extractInt, @extractFloat(file) will read the specified file, parse a float from -the file contents and return that float. - - at filename -~~~~~~~~~ - at filename(v) will return a string containing the filename(s) for the -file(s) mapped to the variable v. When more than one filename is -returned, the filenames will be space separated inside a single string -return value. - - - at filenames -~~~~~~~~~~ - at filenames(v) will return multiple values (!) containing the -filename(s) for the file(s) mapped to the variable v. (compare to - at filename) - - at regexp -~~~~~~~ - at regexp(input,pattern,replacement) will apply regular expression -substitution using the Java java.util.regexp API -. -For example: - ----- -string v = @regexp("abcdefghi", "c(def)g","monkey"); ----- - -will assign the value "abmonkeyhi" to the variable v. - - at sprintf -~~~~~~~~ - at sprintf(spec, variable list) will generate a string based on the specified format. ------ -Example: string s = @sprintf("\t%s\n", "hello"); ------ - -Format specifiers -[width="100%",frame="topbot"] -|====================== -|%%| % sign -|%M| Filename output (waits for close) -|%p| Format variable according to an internal format -|%b| Boolean output -|%f| Float output -|%i| int output -|%s| String output -|%k| Variable sKipped, no output -|%q| Array output -|====================== - - at strcat -~~~~~~~ - at strcat(a,b,c,d,...) will return a string containing all of the -strings passed as parameters joined into a single string. There may be -any number of parameters. - -The + operator concatenates two strings: @strcat(a,b) is the same as -a + b - - at strcut -~~~~~~~ - at strcut(input,pattern) will match the regular expression in the -pattern parameter against the supplied input string and return the -section that matches the first matching parenthesised group. - -For example: ----- -string t = "my name is John and i like puppies."; -string name = @strcut(t, "my name is ([^ ]*) "); -string out = @strcat("Your name is ",name); -trace(out); ----- - -This will output the message: Your name is John. - - at strjoin -~~~~~~~~ - at strjoin(array, delimiter) will combine the elements of an array -into a single string separated by a given delimiter. The array -passed to @strjoin must be of a primitive type (string, int, float, -or boolean). It will not join the contents of an array of files. - -Example: ----- -string test[] = ["this", "is", "a", "test" ]; -string mystring = @strjoin(test, " "); -tracef("%s\n", mystring); ----- - -This will print the string "this is a test". - - at strsplit -~~~~~~~~~ - at strsplit(input,pattern) will split the input string based on -separators that match the given pattern and return a string array. - -Example: ----- -string t = "my name is John and i like puppies."; -string words[] = @strsplit(t, "\\s"); -foreach word in words { - trace(word); -} ----- - -This will output one word of the sentence on each line (though not -necessarily in order, due to the fact that foreach iterations execute in -parallel). - - - at toInt -~~~~~~ - at toInt(input) will parse its input string into an integer. This can be -used with @arg to pass input parameters to a Swift script as -integers. - - at toFloat -~~~~~~~~ - at toFloat(input) will parse its input string into a floating point number. This can be -used with @arg to pass input parameters to a Swift script as -floating point numbers. - - at toString -~~~~~~~~~ - at toString(input) will parse its input into a string. Input can be an int, float, string, -or boolean. - - at length -~~~~~~ - at length(array) will return the length of an array in Swift. This function will wait for all elements in the array to be written before returning the length. - - at java -~~~~~~ - at java(class_name, static_method, method_arg) will call a java static method of the class class_name. - -Built-in procedure reference ----------------------------- -This section details built-in procedures that are available for use in -the Swift scripting language. - -readData -~~~~~~~~ -readData will read data from a specified file and assign it to Swift variable. The format of the input file is -controlled by the type of the return value. For scalar return types, such as -int, the specified file should contain a single value of that type. For arrays -of scalars, the specified file should contain one value per line. For complex types -of scalars, the file should contain two rows. The first row should be structure -member names separated by whitespace. The second row should be the -corresponding values for each structure member, separated by whitespace, in the -same order as the header row. For arrays of structs, the file should contain a -heading row listing structure member names separated by whitespace. There -should be one row for each element of the array, with structure member elements -listed in the same order as the header row and separated by whitespace. The following example shows how readData() can be used to populate an array of Swift struct-like complex type: - ----- -type Employee{ - string name; - int id; - string loc; -} - -Employee emps[] = readData("emps.txt"); ----- - -Where the contents of the "emps.txt" file are: - ----- -name id loc -Thomas 2222 Chicago -Gina 3333 Boston -Anne 4444 Houston ----- - -This will result in the array "emps" with 3 members. This can be processed within a Swift script using the foreach construct as follows: - ----- -foreach emp in emps{ - tracef("Employee %s lives in %s and has id %d", emp.name, emp.loc, emp.id); -} ----- - - -readStructured -~~~~~~~~~~~~~~ -readStructured will read data from a specified file, like readdata, but -using a different file format more closely related to that used by the -ext mapper. - -Input files should list, one per line, a path into a Swift structure, -and the value for that position in the structure: - ----- -rows[0].columns[0] = 0 -rows[0].columns[1] = 2 -rows[0].columns[2] = 4 -rows[1].columns[0] = 1 -rows[1].columns[1] = 3 -rows[1].columns[2] = 5 ----- - -which can be read into a structure defined like this: - ----- -type vector { - int columns[]; -} - -type matrix { - vector rows[]; -} - -matrix m; - -m = readStructured("readStructured.in"); ----- - -(since Swift 0.7, was readData2(deprecated)) - -trace -~~~~~ -trace will log its parameters. By default these will appear on both -stdout and in the run log file. Some formatting occurs to produce the -log message. The particular output format should not be relied upon. - -tracef -~~~~~~ - -+tracef(_spec_, _variable list_)+ will log its parameters as formatted -by the formatter _spec_. _spec_ must be a string. Checks the type of -the specifiers arguments against the variable list and allows for -certain escape characters. - -Example: ----- -int i = 3; -tracef("%s: %i\n", "the value is", i); ----- - -Specifiers: - -+%s+:: Format a string. -+%b+:: Format a boolean. -+%i+:: Format a number as an integer. -+%f+:: Format a number as a floating point number. -+%q+:: Format an array. -+%M+:: Format a mapped variable's filename. -+%k+:: Wait for the given variable but do not format it. -+%p+:: Format variable according to an internal format. - -Escape sequences: - -+\n+:: Produce a newline. -+\t+:: Produce a tab. - -Known issues: :: Swift does not correctly scan certain backslash -sequences such as +\\+. - -writeData -~~~~~~~~~ -writeData will write out data structures in the format described for -readData. The following example demonstrates how one can write a string "foo" into a file "writeDataPrimitive.out": - ----- -include::../../tests/language-behaviour/IO/writeDataPrimitive.swift[] ----- - Deleted: branches/release-0.95/docs/userguide/build_options =================================================================== --- branches/release-0.95/docs/userguide/build_options 2014-01-08 22:04:50 UTC (rev 7462) +++ branches/release-0.95/docs/userguide/build_options 2014-01-08 22:13:41 UTC (rev 7463) @@ -1,24 +0,0 @@ -Build options -------------- -See the Swift download page for -instructions on downloading and building Swift from source. When building, -various build options can be supplied on the ant commandline. These are -summarised here: - -with-provider-condor - build with CoG condor provider - -with-provider-coaster - build with CoG coaster provider (see the section on -coasters). Since 0.8, coasters are always built, and this option has no effect. - -no-supporting - produces a distribution without supporting commands such as -grid-proxy-init. This is intended for when the Swift distribution will be used -in an environment where those commands are already provided by other packages, -where the Swift package should be providing only Swift commands, and where the -presence of commands such as grid-proxy-init from the Swift distribution in the -path will mask the presence of those commands from their true distribution -package such as a Globus Toolkit package. - ----- -$ ant -Dno-supporting=true redist ----- - Deleted: branches/release-0.95/docs/userguide/clustering =================================================================== --- branches/release-0.95/docs/userguide/clustering 2014-01-08 22:04:50 UTC (rev 7462) +++ branches/release-0.95/docs/userguide/clustering 2014-01-08 22:13:41 UTC (rev 7463) @@ -1,24 +0,0 @@ -Clustering ----------- -Swift can group a number of short job submissions into a single larger job -submission to minimize overhead involved in launching jobs (for example, caused -by security negotiation and queuing delay). In general, coasters should be used -in preference to the clustering mechanism documented in this section. - -By default, clustering is disabled. It can be activated by setting the -clustering.enabled property to true. - -A job is eligible for clustering if the GLOBUS::maxwalltime profile is -specified in the tc.data entry for that job, and its value is less than the -value of the clustering.min.time property. - -Two or more jobs are considered compatible if they share the same site and do -not have conflicting profiles (e.g. different values for the same environment -variable). - -When a submitted job is eligible for clustering, it will be put in a clustering -queue rather than being submitted to a remote site. The queue is processed at -intervals specified by the clustering.queue.delay property. The processing of -the clustering queue consists of selecting compatible jobs and grouping them -into clusters whose maximum wall time does not exceed twice the value of the -clustering.min.time property. Deleted: branches/release-0.95/docs/userguide/commands =================================================================== --- branches/release-0.95/docs/userguide/commands 2014-01-08 22:04:50 UTC (rev 7462) +++ branches/release-0.95/docs/userguide/commands 2014-01-08 22:13:41 UTC (rev 7463) @@ -1,213 +0,0 @@ -Commands --------- -The commands detailed in this section are available in the bin/ -directory of a Swift installation and can by run from the commandline if -that directory is placed on the PATH. - - -swift -~~~~~ -The swift command is the main command line tool for executing -Swift scripts. - - -Command-line Syntax -^^^^^^^^^^^^^^^^^^^ -The swift command is invoked as follows: swift [options] -Swifti script [Swift-arguments]* with options taken from the -following list, and Swift script arguments made available to the -Swift script through the @arg function. - -Swift command-line options - --help or -h - - Display usage information - --typecheck - - Does a typecheck of a Swift script, instead of executing it. - --dryrun - - Runs the Swift script without submitting any jobs. This can be - used to obtain an execution graph in conjunction with the +pgraph+ - options below. - --monitor - - Shows a graphical resource monitor - --resume file - - Resumes the execution using a resume-log file .rlog - --config file - - Indicates the Swift configuration file to be used for this run. - Properties in this configuration file will override the default - properties. If individual command line arguments are used for - properties, they will override the contents of this file. - --verbose | -v - - Increases the level of output that Swift produces on the console to - include more detail about the execution - --debug | -d - - Increases the level of output that Swift produces on the console to - include lots of detail about the execution - --logfile file - - Specifies a file where log messages should go to. By default Swift - uses the name of the program being run and a numeric index (e.g. - myworkflow.1.log) - --runid identifier - - Specifies the run identifier. This must be unique for every - invocation and is used in several places to keep files from - different executions cleanly separated. By default, a datestamp and - random number are used to generate a run identifier. When using this - parameter, care should be taken to ensure that the run ID remains - unique with respect to all other run IDs that might be used, - irrespective of (at least) expected execution sites, program or user. - --version - - Display Swift version and exit - --recompile - - Forces Swift to re-compile the invoked Swift script. While Swift - is meant to detect when recompilation is necessary, in some - special cases it fails to do so. This flag helps with those - special cases. - --cdm.file - - Specifies a CDM policy file. - --reduced.logging - - Makes logging more terse by disabling provenance information and - low-level task messages - --minimal.logging - - Makes logging much more terse: reports warnings only - --tui - - Displays an interactive text mode monitor during a run. (since Swift - 0.9) - -In addition, the following Swift properties can be set on the command line: - - * caching.algorithm - * clustering.enabled - * clustering.min.time - * clustering.queue.delay - * ip.address - * kickstart.always.transfer - * kickstart.enabled - * lazy.errors - * pgraph - * pgraph.graph.options - * pgraph.node.options - * sitedir.keep - * sites.file - * tc.file - * tcp.port.range - - -Return codes -^^^^^^^^^^^^ - -The swift command may exit with the following return codes: - -[options="header, autowidth"] -|========= -|value|meaning -|0|success -|1|command line syntax error or missing project name -|2|error during execution -|3|error during compilation -|4|input file does not exist -|=========== - -Environment variables -^^^^^^^^^^^^^^^^^^^^^ - -The swift is influenced by the following environment variables: - -GLOBUS_HOSTNAME, GLOBUS_TCP_PORT_RANGE - - Set in the environment before running Swift. These can be set to inform Swift - of the configuration of your local firewall. More information can be found in - the Globus firewall How-to . - -SWIFT_HEAP_MAX - - Sets the java heap size. Use this if Swift runs out of memory. - Uses the format set by java -Xmx, which is how this is implemented. - The default setting is 1024M. - -COG_OPTS - - Set in the environment before running Swift. Options set in - this variable will be passed as parameters to the Java Virtual Machine - which will run Swift. The parameters vary between virtual machine - imlementations, but can usually be used to alter settings such as - maximum heap size. Typing 'java -help' will sometimes give a list of - commands. - - -swift-osg-ress-site-catalog -~~~~~~~~~~~~~~~~~~~~~~~~~~~ -The swift-osg-ress-site-catalog command generates a site catalog based -on OSG 's ReSS information system -(since Swift 0.9) - -Usage: *swift-osg-ress-site-catalog [options]* - ---help - - Show help message - ---vo=[name] - - Set what VO to query ReSS for - ---engage-verified - - Only retrieve sites verified by the Engagement VO site verification - tests This can not be used together with |--vo|, as the query will - only work for sites advertising support for the Engagement VO. - - This option means information will be retrieved from the Engagement - collector instead of the top-level ReSS collector. - ---out=[filename] - - Write to [filename] instead of stdout - ---condor-g - - Generates sites files which will submit jobs using a local Condor-G - installation rather than through direct GRAM2 submission. (since - Swift 0.10) - - -swift-plot-log -~~~~~~~~~~~~~~ -swift-plot-log generates summaries of Swift run log files. - -Usage: swift-plot-log [logfile] [targets] - -When no targets are specified, swift-plog-log will generate an HTML -report for the run. When targets are specified, only those named targets -will be generated. - Added: branches/release-0.95/docs/userguide/configuration =================================================================== --- branches/release-0.95/docs/userguide/configuration (rev 0) +++ branches/release-0.95/docs/userguide/configuration 2014-01-08 22:13:41 UTC (rev 7463) @@ -0,0 +1,513 @@ +Configuration +------------- +Swift uses a single configuration file called swift.properties. The swift.properties +file is responsible for: + +1. Defining how to interface with schedulers +2. Defining app names and locations +3. Defining various other swift settings and behavior + +Here is an example swift.properties file. + +----- +# Define a site named sandyb +site.sandyb { + tasksPerWorker=16 + taskWalltime=00:05:00 + jobManager=slurm + jobQueue=sandyb + maxJobs=1 + workdir=/scratch/midway/$USER/work + filesystem=local +} + +# Define sandyb apps +app.sandyb.echo=/bin/echo + +# Define other swift properties +sitedir.keep=true +wrapperlog.always.transfer=true + +# Select which site to run on +site=sandyb +----- + +The details of this file will be explained more later. Let's first look +at an example of running Swift with this new file. + +Using the swift.properties file above, the new Swift command a user would run +is: + +----- +$ swift script.swift +----- + +That is all that is needed. Everything Swift needs to know is defined in +swift.properties. + +Location of swift.properties +~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +Swift searches for swift.properties files in multiple locations: + +1. The etc/swift.properties file included with the Swift distribution. +2. $SWIFT_SITE_CONF/swift.properties - used for defining site templates. +3. $HOME/.swift/swift.properties +4. swift.properties in your current directory. +5. Any property file you point to with the command line argument "-properties +" + +Settings get read in this order. Definitions in the later files will override +any previous definitions. For example, if you have execution.retries=10 in +$HOME/.swift/swift.properties, and execution.retries=0 in the swift.properties +in your current directory, execution.retries will be set to 0. + +To verify what files are being read, and what values will be set, run: +----- +$ swift -listconfig +----- + +Selecting a site +~~~~~~~~~~~~~~~~ +There are two ways Swift knows where to run. The first is via +swift.properties. The site command specified which site entries +should be used for a particular run. + +----- +site=sandyb +----- + +Sites can also be selected on the command line by using the -site option. + +----- +$ swift -site westmere script.swift +----- + +The -site command line argument will override any sites selected in +swift.properties. + +Selecting multiple sites +~~~~~~~~~~~~~~~~~~~~~~~~ +To use multiple sites, use a list of site names separated by commas. In +swift.properties: + +----- +site=westmere,sandyb +----- + +The same format can be used on the command line: + +----- +$ swift -site westmere,sandyb script.swift +----- + +NOTE: You can also use "sites=" in swift.properties, and "-sites x,y,z" on the +command line. + +Run directories +~~~~~~~~~~~~~~~ +When you run Swift, you will see a run directory get created. The run +directory has the name of runNNN, where NNN starts at 000 and increments for +every run. + +The run directories can be useful for debugging. They contain: +.Run directory contents +|====================== +|apps |An apps generated from swift.properties +|cf |A configuration file generated from swift.properties +|runNNN.log|The log file generated during the Swift run +|scriptname-runNNN.d|Debug directory containing wrapper logs +|scripts|Directory that contains scheduler scripts used for that run +|sites.xml|A sites.xml generated from swift.properties +|swift.out|The standard out and standard error generated by Swift +|====================== + +Using site templates +~~~~~~~~~~~~~~~~~~~~ +This new configuration mechanism should make it easier to use site templates. +To use this, set the environment variable $SWIFT_SITE_CONF to a directory +containing a swift.properties file. This swift.properties can contain multiple +site definitions for the various queues available on the cluster you are using. + +Your local swift.properties then does not need to define the entire site. It +may contain only differences you need to make that are specific to your +application, like walltime. + +Backward compatability +~~~~~~~~~~~~~~~~~~~~~~~ +New users are encouraged to use the configuration mechanisms described in this documentation. +However, if you are migrating from an older Swift release to 0.95, the older-style configurations +using sites.xml and tc.data should still work. If you notice an instance where this is not true, +please send an email to swift-support at ci.uchicago.edu. + +The swift.properties file format +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + +Site definitions +^^^^^^^^^^^^^^^^ +Site definitions in the swift.properties files begin with "site". +The second word is the name of the site you are defining. In these examples we +will define a site called westmere. +The third word is the property. + +For example: +----- +site.westmere.jobQueue=fast +----- + +Before the site properties are listed, it's important to understand the +terminology used. + +A *task*, or *app task* is an instance of a program as defined in +a Swift app() function. + +A *worker* is the program that launches app tasks. + +A *job* is related to schedulers. It is the mechanism by which workers +are launched. + +Below is the list of valid site properties with brief explanations of what +they do, and an example swift.properties entry. + +.swift.properties site properties +[options="header"] +|================================ +|Property|Description|Example + +|filesystem| +Defines how files should be accessed +|site.westmere.filesystem=local + +|jobGranularity| +Specifies the granularity of a job, in nodes +|site.westmere.jobGranularity=2 + +|jobManager| +Specifies how jobs will be launched. The supported job managers are +"cobalt", "slurm", "condor", "pbs", "lsf", "local", and "sge". +|site.westmere.jobManager=slurm + +|jobProject| +Set the project name for the job scheduler +|site.westmere.project=myproject + +|jobQueue| +Set the name of the scheduler queue to use. +|site.westmere.jobQueue=westmere + +|jobWalltime| +The maximum number amount of time allocated in a scheduler job, in hh:mm:ss +format. +|site.westmere.jobWalltime=01:00:00 + +|maxJobs| +Maximum number of scheduler jobs to submit +|site.westmere.maxJobs=20 + +|maxNodesPerJob| +The maximum number of nodes to request per scheduler job. +|site.westmere.maxNodesPerJob=2 + +|taskDir| +Tasks will be run from this directory. In the absence of a taskDir definition, +Swift will run the task from workdir. +|site.westmere.taskDir=/scratch/local/$USER/work + +|tasksPerWorker| +The number of tasks that each worker can run simultaneously. +|site.westmere.tasksPernode=12 + +|taskThrottle| +The maximum number of active tasks across all workers. +|site.westmere.taskThrottle=100 + +|taskWalltime| +The maximum amount of time a task may run, in hh:mm:ss. +|site.westmere.taskWalltime=01:00:00 + +|site | +Name of site or sites to run on. This is the same as running with +swift -site +|site=westmere + +|workdir | +The workdirectory element specifies where on the site files can be stored. +This directory must be available on all worker nodes that will be used for +execution. A shared cluster filesystem is appropriate for this. Note that +you need to specify absolute pathname for this field. +|site.westmere.workdir=/scratch/midway/$USER/work + +|================================ + +Grouping site properties +~~~~~~~~~~~~~~~~~~~~~~~~ +The example swift.properties in this document listed the following site +related properties: + +----- +site.westmere.provider=local:slurm +site.westmere.jobsPerNode=12 +site.westmere.maxWalltime=00:05:00 +site.westmere.queue=westmere +site.westmere.initialScore=10000 +site.westmere.filesystem=local +site.westmere.workdir=/scratch/midway/davidkelly999 +----- + +However, it is also simplify this by grouping these properties together with +curly brackets. + +------ +site.westmere { + provider=local:slurm + jobsPerNode=12 + maxWalltime=00:05:00 + queue=westmere + initialScore=10000 + filesystem=local + workdir=/scratch/midway/$USER/work +} +----- + +App definitions +~~~~~~~~~~~~~~~ +In 0.95, applications wildcards will be used by default. This means that +$PATH will be searched and pathnames to application do not have to be defined. + +In the case where you have multiple sites defined, and you want +control over where things run, you will need to define the location of apps. +In this scenario, you will can define apps in swift.properties with something +like this: + +----- +app.westmere.cat=/bin/cat +----- + +When an app is defined in swift.properties for any site you are running on, +wildcards will be disabled, and all apps you want to use must be defined. + +General Swift properties +~~~~~~~~~~~~~~~~~~~~~~~~ +Various aspects of the behavior of Swift can be configured through general +Swift properties. Below is a list of properties: + +[options="header"] +|================ +|Name|Valid Values|Default Value|Description + +|execution.retries +|Positive integer +|2 +|The number of time a job will be retried if it fails (giving a + maximum of 1 + execution.retries attempts at execution) + +|foreach.max.threads +|Positive integer +|1024 +|Limits the number of concurrent iterations that each foreach + statement can have at one time. This conserves memory for swift + programs that have large numbers of iterations (which would + otherwise all be executed in parallel) + +|lazy.errors +|true, false +|false +|Swift can report application errors in two modes, depending on the + value of this property. If set to false, Swift will report the + first error encountered and immediately stop execution. If set to + true, Swift will attempt to run as much as possible from a + Swift script before stopping execution and reporting all + errors encountered. When developing Swift scripts, using the default value of + false can make the program easier to debug. However in production + runs, using true will allow more of a Swift script to be + run before Swift aborts execution. + +|swift.home +|String +| +|Points to the Swift installation directory ($SWIFT_HOME). In general, this should + not be set as Swift can find its own installation directory, and incorrectly setting it may impair the + correct functionality of Swift. + +|pgraph +|true, false +|false +|Swift can generate a Graphviz file +representing the structure of the Swift script it has run. If +this property is set to true, Swift will save the provenance graph +in a file named by concatenating the program name and the instance +ID (e.g. helloworld-ht0adgi315l61.dot). +If set to false, no provenance graph will be generated. If a file +name is used, then the provenance graph will be saved in the +specified file. +The generated dot file can be rendered into a graphical form using +Graphviz , for example with a command-line +such as: +$ swift -pgraph graph1.dot q1.swift +$ dot -ograph.png -Tpng graph1.dot + +|pgraph.graph.options +|String +|splines="compound", rankdir="TB" +|This property specifies a Graphviz + specific set of parameters for the graph. + +|pgraph.node.options +|String +|color="seagreen", style="filled" +|Used to specify a set of Graphviz specific + properties for the nodes in the graph. + +|provenance.log +|true, false +|false +|This property controls whether the log file will contain provenance + information enabling this will increase the size of log files, + sometimes significantly. + +|sitedir.keep +|true, false +|false +|Indicates whether the working directory on the remote site should be + left intact even when a run completes successfully. This can be used + to inspect the site working directory for debugging purposes. + +|status.mode +|files, provider +|files +|Controls how Swift will communicate the result code of running user + programs from workers to the submit side. In files mode, a file + indicating success or failure will be created on the site shared + filesystem. In provider mode, the execution provider job status + will be used. provider mode requires the underlying job execution system to + correctly return exit codes. + +|tcp.port.range +|none +|, where start and end are integers +|A TCP port range can be specified to restrict the ports on which + GRAM callback services are started. This is likely needed if your + submit host is behind a firewall, in which case the firewall should + be configured to allow incoming connections on ports in the range. + +|throttle.file.operations +|, off +|8 +|Limits the total number of concurrent file operations that can + happen at any given time. File operations (like transfers) require + an exclusive connection to a site. These connections can be + expensive to establish. A large number of concurrent file operations + may cause Swift to attempt to establish many such expensive + connections to various sites. Limiting the number of concurrent file + operations causes Swift to use a small number of cached connections + and achieve better overall performance. + +|throttle.host.submit +|, off +|2 +|Limits the number of concurrent submissions for any of the sites + Swift will try to send jobs to. In other words it guarantees that no + more than the value of this throttle jobs sent to any site will be + concurrently in a state of being submitted. + +|throttle.score.job.factor +|, off +|4 +|The Swift scheduler has the ability to limit the number of +concurrent jobs allowed on a site based on the performance history +of that site. Each site is assigned a score (initially 1), which can +increase or decrease based on whether the site yields successful or +faulty job runs. The score for a site can take values in the (0.1, +100) interval. The number of allowed jobs is calculated using the +following formula: +2 + score*throttle.score.job.factor +This means a site will always be allowed at least two concurrent +jobs and at most 2 + 100*throttle.score.job.factor. With a default +of 4 this means at least 2 jobs and at most 402. +This parameter can also be set per site using the jobThrottle +profile key in a site catalog entry. + +|throttle.submit +|, off +|4 +|Limits the number of concurrent submissions for a run. This throttle + only limits the number of concurrent tasks (jobs) that are being + sent to sites, not the total number of concurrent jobs that can be + run. The submission stage in GRAM is one of the most CPU expensive + stages (due mostly to the mutual authentication and delegation). + Having too many concurrent submissions can overload either or both + the submit host CPU and the remote host/head node causing degraded + performance. + +|throttle.transfers +|, off +|4 +|Limits the total number of concurrent file transfers that can happen + at any given time. File transfers consume bandwidth. Too many + concurrent transfers can cause the network to be overloaded + preventing various other signaling traffic from flowing properly. + +|ticker.disable +|true, false +|false +|When set to true, suppresses the output progress ticker that Swift + sends to the console every few seconds during a run + +|use.wrapper.staging +|true, false +|false +|Determines if the Swift wrapper should do file staging. + +|wrapper.invocation.mode +|absolute, relative +|absolute +|Determines if Swift remote wrappers will be executed by specifying + an absolute path, or a path relative to the job initial working + directory. In most cases, execution will be successful with either + option. However, some execution sites ignore the specified initial + working directory, and so absolute must be used. Conversely on + some sites, job directories appear in a different place on the + worker node file system than on the filesystem access node, with the + execution system handling translation of the job initial working + directory. In such cases, relative mode must be used. + +|wrapper.parameter.mode +|args,files +|args +|Controls how Swift will supply parameters to the remote wrapper + script. args mode will pass parameters on the command line. Some + execution systems do not pass commandline parameters sufficiently + cleanly for Swift to operate correctly. files mode will pass + parameters through an additional input file. This + provides a cleaner communication channel for parameters, at the + expense of transferring an additional file for each job invocation. + +|wrapperlog.always.transfer +|true, false +|false +|This property controls when output from the Swift remote wrapper is + transfered back to the submit site. When set to false, wrapper + logs are only transfered for jobs that fail. If set to true, + wrapper logs are transfered after every job is completed or failed. + +|================ + + +Using shell variables +~~~~~~~~~~~~~~~~~~~~~ +Any value in swift.properties may contain environment variables. For example: + +----- +workdir=/scratch/midway/$USER/work +---- + +Environment variables are expanded locally on the machine where you are running +Swift. + +Swift will also define a variable called $RUNDIRECTORY that is the path to the +run directory Swift creates. In a case where you'd like your work directory +to be in the runNNN directory, you may do something like this: + +----- +workdir=$RUNDIRECTORY +----- + Deleted: branches/release-0.95/docs/userguide/configuration_properties =================================================================== --- branches/release-0.95/docs/userguide/configuration_properties 2014-01-08 22:04:50 UTC (rev 7462) +++ branches/release-0.95/docs/userguide/configuration_properties 2014-01-08 22:13:41 UTC (rev 7463) @@ -1,493 +0,0 @@ -Swift configuration properties ------------------------------- -Various aspects of the behavior of Swift can be configured through properties. -Swift recognizes a global, per installation properties file which can found in -etc/swift.properties in the Swift installation directory and a user properties -file which can be created by each user in ~/.swift/swift.properties. - -Swift will first load the global properties file. It will then try to load the -user properties file. If a user properties file is found, individual properties -explicitly set in that file will override the respective properties in the -global properties file. Furthermore, some of the properties can be overridden -directly using command line arguments to the *swift* command. - -Swift properties are specified in the following format: - -= - -The value can contain variables which will be expanded when the -properties file is read. Expansion is performed when the name of the -variable is used inside the standard shell dereference construct: -${name}. The following variables can be used in the Swift -configuration file: - -Swift Configuration Variables - -swift.home - - Points to the Swift installation directory ($SWIFT_HOME). In - general, this should not be set as Swift can find its own - installation directory, and incorrectly setting it may impair the - correct functionality of Swift. - -user.name - - The name of the current logged in user. - -user.home - - The user's home directory. - -The following is a list of valid Swift properties: - -Swift Properties - -caching.algorithm - - Valid values: LRU - - Default value: LRU - - Swift caches files that are staged in on remote resources, and files - that are produced remotely by applications, such that they can be - re-used if needed without being transfered again. However, the - amount of remote file system space to be used for caching can be - limited using the swift:storagesize profile entry in the sites.xml file. Example: - ----- - - - -/scratch/swift -20000000 - ----- - - The decision of which files to keep in the cache and which files to - remove is made considering the value of the caching.algorithm - property. Currently, the only available value for this property is - LRU, which would cause the least recently used files to be deleted - first. - -clustering.enabled - - Valid values: true, false - - Default value: false - - Enables clustering. - -clustering.min.time - - Valid values: - - Default value: 60 - - Indicates the threshold wall time for clustering, in seconds. Jobs - that have a wall time smaller than the value of this property will - be considered for clustering. - -clustering.queue.delay - - Valid values: - - Default value: 4 - - This property indicates the interval, in seconds, at which the - clustering queue is processed. - -execution.retries - - Valid values: positive integers - - Default value: 2 - - The number of time a job will be retried if it fails (giving a - maximum of 1 + execution.retries attempts at execution) - -foreach.max.threads - - Valid values: positive integers - - Default value: 1024 - - Limits the number of concurrent iterations that each foreach - statement can have at one time. This conserves memory for swift - programs that have large numbers of iterations (which would - otherwise all be executed in parallel). (since Swift 0.9) - -ip.address - - Valid values: - - Default value: N/A - - The Globus GRAM service uses a callback mechanism to send - notifications about the status of submitted jobs. The callback - mechanism requires that the Swift client be reachable from the hosts - the GRAM services are running on. Normally, Swift can detect the - correct IP address of the client machine. However, in certain cases - (such as the client machine having more than one network interface) - the automatic detection mechanism is not reliable. In such cases, - the IP address of the Swift client machine can be specified using - this property. The value of this property must be a numeric address - without quotes. - - This option is deprecated and the hostname property should be used - instead. - -kickstart.always.transfer - - Valid values: true, false - - Default value: false - - This property controls when output from Kickstart is transfered back - to the submit site, if Kickstart is enabled. When set to false, - Kickstart output is only transfered for jobs that fail. If set to - true, Kickstart output is transfered after every job is completed - or failed. - -kickstart.enabled - - Valid values: true, false, maybe - - Default value: maybe - - This option allows controlling of when Swift uses Kickstart. - A value of false disables the use of Kickstart, - while a value of true enables the use of Kickstart, in which case - sites specified in the sites.xml file must have valid - gridlaunch attributes. The maybe value will enable the use of - Kickstart only on sites that have the gridlaunch attribute - specified. - -lazy.errors - - Valid values: true, false - - Default value: false - - Swift can report application errors in two modes, depending on the - value of this property. If set to false, Swift will report the - first error encountered and immediately stop execution. If set to - true, Swift will attempt to run as much as possible from a - Swift script before stopping execution and reporting all - errors encountered. - - When developing Swift scripts, using the default value of - false can make the program easier to debug. However in production - runs, using true will allow more of a Swift script to be - run before Swift aborts execution. - -pgraph - - Valid values: true, false, - - Default value: false - - Swift can generate a Graphviz file - representing the structure of the Swift script it has run. If - this property is set to true, Swift will save the provenance graph - in a file named by concatenating the program name and the instance - ID (e.g. helloworld-ht0adgi315l61.dot). - - If set to false, no provenance graph will be generated. If a file - name is used, then the provenance graph will be saved in the - specified file. - - The generated dot file can be rendered into a graphical form using - Graphviz , for example with a command-line - such as: - ----- -$ swift -pgraph graph1.dot q1.swift -$ dot -ograph.png -Tpng graph1.dot ----- - -pgraph.graph.options - - Valid values: - - Default value: splines="compound", rankdir="TB" - - This property specifies a Graphviz - specific set of parameters for the graph. - -pgraph.node.options - - Valid values: - - Default value: color="seagreen", style="filled" - - Used to specify a set of Graphviz specific - properties for the nodes in the graph. - -provenance.log - - Valid values: true, false - - Default value: false - - This property controls whether the log file will contain provenance - information enabling this will increase the size of log files, - sometimes significantly. - -replication.enabled - - Valid values: true, false - - Default value: false - - Enables/disables replication. Replication is used to deal with jobs - sitting in batch queues for abnormally large amounts of time. If - replication is enabled and certain conditions are met, Swift creates - and submits replicas of jobs, and allows multiple instances of a job - to compete. - -replication.limit - - Valid values: positive integers - - Default value: 3 - - The maximum number of replicas that Swift should attempt. - -sitedir.keep - - Valid values: true, false - - Default value: false - - Indicates whether the working directory on the remote site should be - left intact even when a run completes successfully. This can be used - to inspect the site working directory for debugging purposes. - -sites.file - - Valid values: - - Default value: ${swift.home}/etc/sites.xml - - Points to the location of the site catalog, which contains a list of - all sites that Swift should use. - -status.mode - - Valid values: files, provider - - Default value: files - - Controls how Swift will communicate the result code of running user - programs from workers to the submit side. In files mode, a file - indicating success or failure will be created on the site shared - filesystem. In provider mode, the execution provider job status - will be used. - - provider mode requires the underlying job execution system to - correctly return exit codes. In at least the cases of GRAM2, and - clusters used with any provider, exit codes are not returned, and so - files mode must be used in those cases. Otherwise, provider mode - can be used to reduce the amount of filesystem access. (since Swift - 0.8) - -tc.file - - Valid values: - - Default value: ${swift.home}/etc/tc.data - - Points to the location of the transformation catalog file which - contains information about installed applications. Details about the - format of the transformation catalog can be found here - . - - -tcp.port.range - - Valid values: , where start and end are integers - - Default value: none - - A TCP port range can be specified to restrict the ports on which - GRAM callback services are started. This is likely needed if your - submit host is behind a firewall, in which case the firewall should - be configured to allow incoming connections on ports in the range. - -throttle.file.operations - - Valid values: , off - - Default value: 8 - - Limits the total number of concurrent file operations that can - happen at any given time. File operations (like transfers) require - an exclusive connection to a site. These connections can be - expensive to establish. A large number of concurrent file operations - may cause Swift to attempt to establish many such expensive - connections to various sites. Limiting the number of concurrent file - operations causes Swift to use a small number of cached connections - and achieve better overall performance. - -throttle.host.submit - - Valid values: , off - - Default value: 2 - - Limits the number of concurrent submissions for any of the sites - Swift will try to send jobs to. In other words it guarantees that no - more than the value of this throttle jobs sent to any site will be - concurrently in a state of being submitted. - -throttle.score.job.factor - - Valid values: , off - - Default value: 4 - - The Swift scheduler has the ability to limit the number of - concurrent jobs allowed on a site based on the performance history - of that site. Each site is assigned a score (initially 1), which can - increase or decrease based on whether the site yields successful or - faulty job runs. The score for a site can take values in the (0.1, - 100) interval. The number of allowed jobs is calculated using the - following formula: - - 2 + score*throttle.score.job.factor - - This means a site will always be allowed at least two concurrent - jobs and at most 2 + 100*throttle.score.job.factor. With a default - of 4 this means at least 2 jobs and at most 402. - - This parameter can also be set per site using the jobThrottle - profile key in a site catalog entry. - -throttle.submit - - Valid values: , off - - Default value: 4 - - Limits the number of concurrent submissions for a run. This throttle - only limits the number of concurrent tasks (jobs) that are being - sent to sites, not the total number of concurrent jobs that can be - run. The submission stage in GRAM is one of the most CPU expensive - stages (due mostly to the mutual authentication and delegation). - Having too many concurrent submissions can overload either or both - the submit host CPU and the remote host/head node causing degraded - performance. - -throttle.transfers - - Valid values: , off - - Default value: 4 - - Limits the total number of concurrent file transfers that can happen - at any given time. File transfers consume bandwidth. Too many - concurrent transfers can cause the network to be overloaded - preventing various other signaling traffic from flowing properly. - -ticker.disable - - Valid values: true, false - - Default value: false - - When set to true, suppresses the output progress ticker that Swift - sends to the console every few seconds during a run (since Swift 0.9) - -wrapper.invocation.mode - - Valid values: absolute, relative - - Default value: absolute - - Determines if Swift remote wrappers will be executed by specifying - an absolute path, or a path relative to the job initial working - directory. In most cases, execution will be successful with either - option. However, some execution sites ignore the specified initial - working directory, and so absolute must be used. Conversely on - some sites, job directories appear in a different place on the - worker node file system than on the filesystem access node, with the - execution system handling translation of the job initial working - directory. In such cases, relative mode must be used. (since Swift - 0.9) - -use.wrapper.staging - - Valid values: true, false - Default value: false - - Determines if the Swift wrapper should do file staging. - -wrapper.parameter.mode - - Controls how Swift will supply parameters to the remote wrapper - script. args mode will pass parameters on the command line. Some - execution systems do not pass commandline parameters sufficiently - cleanly for Swift to operate correctly. files mode will pass - parameters through an additional input file (since Swift 0.95). This - provides a cleaner communication channel for parameters, at the - expense of transferring an additional file for each job invocation. - -wrapperlog.always.transfer - - Valid values: true, false - - Default value: false - - This property controls when output from the Swift remote wrapper is - transfered back to the submit site. When set to false, wrapper - logs are only transfered for jobs that fail. If set to true, - wrapper logs are transfered after every job is completed or failed. - -Example: - ----- -sites.file=${vds.home}/etc/sites.xml -tc.file=${vds.home}/etc/tc.data -ip.address=192.168.0.1 ----- - -Monitoring Swift -~~~~~~~~~~~~~~~~ - -A Swift run can be monitored for progress and resource usage. To monitor the resource usage, use the +-monitor+ option with the Swift commandline. For example: - ----- -swift -tc.file tc -sites.file sites.xml -config cf modis04.swift -monitor ----- - -This will produce a gui/X window consisting of the following quantities: - -* Allocated memory -* Heap Size -* Total Threads -* Total Workers - -.Figure 4. Resource Monitor -image:swift_monitor.png[] - -Figure 4 shows a snapshot of a Swift resource monitor. - - -The progress of a Swift run can be monitored using the +-tui+ option. For example: - ----- -swift -tc.file tc -sites.file sites.xml -config cf modis04.swift -tui ----- - -This will produce a textual user interface with multiple tabs, each showing the following features of the current Swift run: - -* A summary view showing task status -* An apps tab -* A jobs tab -* A transfer tab -* A scheduler tab -* A Tast statistics tab -* A customized tab called 'Ben's View' - -Navigation between these tabs can be done using the function keys f2 through f8. - Added: branches/release-0.95/docs/userguide/debugging =================================================================== --- branches/release-0.95/docs/userguide/debugging (rev 0) +++ branches/release-0.95/docs/userguide/debugging 2014-01-08 22:13:41 UTC (rev 7463) @@ -0,0 +1,137 @@ +Debugging +--------- + +Retries +~~~~~~~ +If an application procedure execution fails, Swift will attempt that +execution again repeatedly until it succeeds, up until the limit defined +in the execution.retries configuration property. + +Site selection will occur for retried jobs in the same way that it +happens for new jobs. Retried jobs may run on the same site or may run +on a different site. + +If the retry limit execution.retries is reached for an application +procedure, then that application procedure will fail. This will cause +the entire run to fail - either immediately (if the lazy.errors +property is false) or after all other possible work has been attempted +(if the lazy.errors property is true). + +With or without lazy errors, each app is re-tried +times before it is considered failed for good. An app that has failed +but still has retries left will appear as "Failed but can retry". + +Without lazy errors, once the first (time-wise) app has run out of +retries, the whole run is stopped and the error reported. + +With lazy errors, if an app fails after all retries, its outputs are +marked as failed. All apps that depend on failed outputs will also fail +and their outputs marked as failed. All apps that have non-failed +outputs will continue to run normally until everything that can proceed +completes. + +For example, if you have: + +---- +foreach x in [1:1024] { + app(x); +} +---- + +If the first started app fails, all the other ones can still +continue, and if they don't otherwise fail, the run will only terminate +when all 1023 of them will complete. + +So basically the idea behind lazy errors is to run EVERYTHING that can +safely be run before stopping. + +Some types of errors (such as internal swift errors happening in an app +thread) will still stop the run immediately even in lazy errors mode. +But we all know there are no such things as internal swift errors :) + +Restarts +~~~~~~~~ +If a run fails, Swift can resume the program from the point of failure. +When a run fails, a restart log file will be left behind in the run directory +called restart.log. This restart log can then be passed to a subsequent Swift +invocation using the -resume parameter. Swift will resume execution, avoiding +execution of invocations that have previously completed successfully. The Swift +source file and input data files should not be modified between runs. + +Normally, if the run completes successfully, the restart log file is deleted. +If however the workflow fails, swift can use the restart log file to continue +execution from a point before the failure occurred. In order to restart from a +restart log file, the -resume logfile argument can be used after the +Swift script file name. Example: + +---- +$ swift -resume runNNN/restart.log example.swift. +---- + +Monitoring Swift +~~~~~~~~~~~~~~~ + +A Swift run can be monitored for progress and resource usage. To monitor the resource usage, use the +-monitor+ option with the Swift commandline. For example: + +---- +swift -tc.file tc -sites.file sites.xml -config cf modis04.swift -monitor +---- + +This will produce a gui/X window consisting of the following quantities: + +* Allocated memory +* Heap Size +* Total Threads +* Total Workers + +.Figure 4. Resource Monitor +image:swift_monitor.png[] + +Figure 4 shows a snapshot of a Swift resource monitor. + +The progress of a Swift run can be monitored using the +-tui+ option. For example: + +---- +swift -tc.file tc -sites.file sites.xml -config cf modis04.swift -tui +---- + +This will produce a textual user interface with multiple tabs, each showing the following features of the current Swift run: + +* A summary view showing task status +* An apps tab +* A jobs tab +* A transfer tab +* A scheduler tab +* A Tast statistics tab +* A customized tab called 'Ben's View' + +Navigation between these tabs can be done using the function keys f2 through f8. + +Log analysis +~~~~~~~~~~~~ +Swift logs can contain a lot of information. Swift includes a utility called "swiftlog" that +analyzes the log and prints a nicely formatted summary of all tasks of a given run. + +.swiftlog usage +------ +$ swiftlog run027 +Task 1 + App name = cat + Command line arguments = data.txt data2.txt + Host = westmere + Start time = 17:09:59,607+0000 + Stop time = 17:10:22,962+0000 + Work directory = catsn-run027/jobs/r/cat-r6pxt6kl + Staged in files = file://localhost/data.txt file://localhost/data2.txt + Staged out files = catsn.0004.outcatsn.0004.err + +Task 2 + App name = cat + Command line arguments = data.txt data2.txt + Host = westmere + Start time = 17:09:59,607+0000 + Stop time = 17:10:22,965+0000 + Work directory = catsn-run027/jobs/q/cat-q6pxt6kl + Staged in files = file://localhost/data.txt file://localhost/data2.txt + Staged out files = catsn.0010.outcatsn.0010.err +----- Added: branches/release-0.95/docs/userguide/gettingStarted =================================================================== --- branches/release-0.95/docs/userguide/gettingStarted (rev 0) +++ branches/release-0.95/docs/userguide/gettingStarted 2014-01-08 22:13:41 UTC (rev 7463) @@ -0,0 +1,27 @@ +Getting Started +--------------- +This section will provide links and information to new +Swift users about how to get started using Swift. + +Quickstart +~~~~~~~~~~ +This section provides the basic steps for downloading and installing Swift. + +* Swift requires that a recent version of Oracle Java is installed. More information about installing Java can be found at http://www.oracle.com/technetwork/java. +* Download Swift 0.95 at http://swiftlang.org/packages/swift-0.95.tar.gz. +* Extract by running "tar xfz swift-0.95.tar.gz" +* Add Swift to $PATH by running "export PATH=$PATH:/path/to/swift-0.95/bin" +* Verify swift is working by running "swift -version" + +Tutorials +~~~~~~~~~ +There are a few tutorials available for specific clusters and +supercomputers. + +http://swift-lang.org/tutorials/cloud/tutorial.html[Swift on Clouds and Ad Hoc collections of workstations] + +http://swift-lang.org/tutorials/osgconnect/tutorial.html[Swift on OSG Connect] + +http://swiftlang.org/tutorials/cray/tutorial.html[Swift on Crays] + +http://swiftlang.org/tutorials/midway/tutorial.html[Swift on RCC Midway Cluster at UChicago / Slurm] Deleted: branches/release-0.95/docs/userguide/howto_tips =================================================================== --- branches/release-0.95/docs/userguide/howto_tips 2014-01-08 22:04:50 UTC (rev 7462) +++ branches/release-0.95/docs/userguide/howto_tips 2014-01-08 22:13:41 UTC (rev 7463) @@ -1,160 +0,0 @@ -How-To Tips for Specific User Communities ------------------------------------------ - -Saving Logs - for UChicago CI Users -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -If you have a UChicago Computation Institute account, run this command -in your submit directory after each run. It will copy all your logs and -kickstart records into a directory at the CI for reporting, usage -tracking, support and debugging. - ----- -rsync --ignore-existing *.log *.d login.ci.uchicago.edu:/disks/ci-gpfs/swift/swift-logs/ --verbose ----- - -Specifying TeraGrid allocations -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -TeraGrid users with no default project or with several project -allocations can specify a project allocation using a profile key in the -site catalog entry for a TeraGrid site: - ----- -TG-CCR080002N ----- - -More information on the TeraGrid allocations process can be found here -. - -Launching MPI jobs from Swift -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - -There are several ways to run MPI jobs under Swift. Two will be discussed here - -calling mpiexec from a wrapper script, and using the MPICH/coasters interface. - -Calling mpiexec -^^^^^^^^^^^^^^^ -In this example, a single MPI program will run across two nodes. For this to -happen, sites.xml must be configured to allocate two nodes but only run a -single job on them. A wrapper script must then be used to call mpiexec. - -sites.xml -+++++++++ -First, we need to make sure that Swift will allocate exactly two nodes. This -can be done with the maxnodes and nodegranularity settings. - ------ -2 -2 ------ - -Next, we want to make sure that the MPI program is called only once on those -nodes. There are two settings we must set to get this behavior: ------ -1 -single ------ - -tc.data -+++++++ -The app defined in tc.data should be a shell script wrapper to the actual -program that is being called. Let's assume in this example that the MPI program -we are using is called "mpitest", and the wrapper script will be called -"mpitest.sh". The tc.data will look like this then: - ------ -host mpitest /path/to/mpitest.sh ------ - -Wrapper script -++++++++++++++ -The wrapper script in this example, mpitest.sh, will call mpiexec and launch -the real MPI program. Here is an example: - ------ -#!/bin/bash - -mpiexec /path/to/mpitest "$@" ------ - -Swift then makes an invocation that does not look any different from any other -invocation. In the code below, we pass one input file and get back one output -file. - ----- -type file; - -app (file output_file) mpitest (file input_file) -{ - mpitest @input_file @output_file; -} - -file input <"input.txt">; -file output <"output.txt">; - -output = mpitest(input); ----- - -==== MPICH/Coasters - -In this case, the user desires to launch many MPI jobs within a single -Coasters allocation, reusing Coasters workers for variable-sized jobs. -The reuse of the Coasters workers allows the user to launch many -MPI jobs in rapid succession with minimal overhead. - -The user must access to MPICH compiled for sockets, with +mpiexec+ in -the +PATH+ environment variable. Swift uses this MPICH installation -to launch the user processes on the remote Coasters workers, which are -able to connect back to +mpiexec+ and coordinate the job launch. The -infrastructure must allow the user MPI processes to find each other -and communicate over sockets. - -To configure the user MPI job, simply add +mpi.processes+ and -+mpi.ppn+ to the profile in the +tc.file+: - ----- -pbs_site my_program /path/to/program null null globus::mpi.processes=16;globus::mpi.ppn=8 ----- - -Coasters must be set with +jobsPerNode=1+. - -This runs +mpiexec+ locally, and allocates 2 Coasters workers (2 -nodes), each with 8 MPI processes. Thus, +MPI_COMM_WORLD+ has size -16. - - - -Running on Windows -~~~~~~~~~~~~~~~~~~ - -Swift has the ability to run on a Windows machine, as well as the -ability to submit jobs to a Windows site (provided that an appropriate -provider is used). - -In order to launch Swift on Windows, use the provided batch file -(swift.bat). In certain cases, when a large number of jar libraries are -present in the Swift lib directory and depending on the exact location -of the Swift installation, the classpath environment variable that the -Swift batch launcher tries to create may be larger than what Windows can -handle. In such a case, either install Swift in a directory closer to -the root of the disk (say, c:\swift) or remove non-essential jar files -from the Swift lib directory. - -Due to the large differences between Windows and Unix environments, -Swift must use environment specific tools to achieve some of its goals. -In particular, each Swift executable is launched using a wrapper script. -This script is a Bourne Shell script. On Windows machines, which have no -Bourne Shell interpreter installed by default, the Windows Scripting -Host is used instead, and the wrapper script is written in VBScript. -Similarly, when cleaning up after a run, the "/bin/rm" command available -in typical Unix environments must be replaced by the "del" shell command. - -It is important to note that in order to select the proper set of tools -to use, Swift must know when a site runs under Windows. To inform Swift -of this, specify the "sysinfo" attribute for the "pool" element in the -site catalog. For example: - ----- - -... - ----- Deleted: branches/release-0.95/docs/userguide/images =================================================================== --- branches/release-0.95/docs/userguide/images 2014-01-08 22:04:50 UTC (rev 7462) +++ branches/release-0.95/docs/userguide/images 2014-01-08 22:13:41 UTC (rev 7463) @@ -1 +0,0 @@ -link ../tutorial/images/ \ No newline at end of file Deleted: branches/release-0.95/docs/userguide/kickstart =================================================================== --- branches/release-0.95/docs/userguide/kickstart 2014-01-08 22:04:50 UTC (rev 7462) +++ branches/release-0.95/docs/userguide/kickstart 2014-01-08 22:13:41 UTC (rev 7463) @@ -1,31 +0,0 @@ -Kickstart ---------- -Kickstart is a tool that can be used to gather various information about -the remote execution environment for each job that Swift tries to run. - -For each job, Kickstart generates an XML invocation record. By default -this record is staged back to the submit host if the job fails. - -Before it can be used it must be installed on the remote site and the -sites file must be configured to point to kickstart. - -Kickstart can be downloaded as part of the Pegasus 'worker package' -available from the worker packages section of the Pegasus download page -. - -Untar the relevant worker package somewhere where it is visible to all -of the worker nodes on the remote execution machine (such as in a shared -application filesystem). - -Now configure the gridlaunch attribute of the sites catalog to point to -that path, by adding a gridlaunch attribute to the pool element in -the site catalog: - ----- - -... - ----- - -There are various kickstart.* properties, which have sensible default -values. These are documented in the properties section. Modified: branches/release-0.95/docs/userguide/language =================================================================== --- branches/release-0.95/docs/userguide/language 2014-01-08 22:04:50 UTC (rev 7462) +++ branches/release-0.95/docs/userguide/language 2014-01-08 22:13:41 UTC (rev 7463) @@ -1,7 +1,7 @@ -The Swift scripting Language ----------------------------- +The Swift Language +------------------ -Language basics +Language Basics ~~~~~~~~~~~~~~~ A Swift script describes data, application components, invocations of applications components, and the inter-relations (data flow) between @@ -145,7 +145,6 @@ Arrays and Parallel Execution ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - Arrays of values can be declared using the [] suffix. Following is an example of an array of strings: @@ -184,7 +183,6 @@ Associative Arrays ~~~~~~~~~~~~~~~~~~ - By default, array keys are integers. However, other primitive types are also allowed as array keys. The syntax for declaring an array with a key type different than the default is: @@ -302,7 +300,6 @@ Compound procedures ~~~~~~~~~~~~~~~~~~~ - As with many other programming languages, procedures consisting of Swift script can be defined. These differ from the previously mentioned procedures declared with the app keyword, as they invoke @@ -344,7 +341,6 @@ More about types ~~~~~~~~~~~~~~~~ - Each variable and procedure parameter in Swift script is strongly typed. Types are used to structure data, to aid in debugging and checking program correctness and to influence how Swift interacts with data. @@ -432,3 +428,1390 @@ values in memory or as out-of-core files on disk. Language constructs called mappers specify how each piece of data is stored. +More technical details about Swift script +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +The syntax of Swift script has a superficial resemblance to C and Java. +For example, { and } characters are used to enclose blocks of statements. + +A Swift script consists of a number of statements. Statements may +declare types, procedures and variables, assign values to variables, and +express operations over arrays. + +Variables +~~~~~~~~~ +Variables in Swift scripts are declared to be of a specific type. +Assignments to those variables must be data of that type. Swift script +variables are single-assignment - a value may be assigned to a variable +at most once. This assignment can happen at declaration time or later on +in execution. When an attempt to read from a variable that has not yet +been assigned is made, the code performing the read is suspended until +that variable has been written to. This forms the basis for Swift's +ability to parallelise execution - all code will execute in parallel +unless there are variables shared between the code that cause sequencing. + + +Variable Declarations +~~~~~~~~~~~~~~~~~~~~~ +Variable declaration statements declare new variables. They can +optionally assign a value to them or map those variables to on-disk files. + +Declaration statements have the general form: + +---- +typename variablename ( | = initialValue ) ; +---- + +The format of the mapping expression is defined in the Mappers section. +initialValue may be either an expression or a procedure call that +returns a single value. + +Variables can also be declared in a multivalued-procedure statement, +described in another section. + + +Assignment Statements +~~~~~~~~~~~~~~~~~~~~~ +Assignment statements assign values to previously declared variables. +Assignments may only be made to variables that have not already been +assigned. Assignment statements have the general form: + +---- +variable = value; +---- + +where value can be either an expression or a procedure call that returns +a single value. + +Variables can also be assigned in a multivalued-procedure statement, +described in another section. + + +Procedures +~~~~~~~~~~ +There are two kinds of procedure: An atomic procedure, which describes +how an external program can be executed; and compound procedures which +consist of a sequence of Swift script statements. + +A procedure declaration defines the name of a procedure and its input +and output parameters. Swift script procedures can take multiple inputs +and produce multiple outputs. Inputs are specified to the right of the +function name, and outputs are specified to the left. For example: + +---- +(type3 out1, type4 out2) myproc (type1 in1, type2 in2) +---- + +The above example declares a procedure called myproc, which has two +inputs in1 (of type type1) and in2 (of type type2) and two +outputs out1 (of type type3) and out2 (of type type4). + +A procedure input parameter can be an optional parameter in which case +it must be declared with a default value. When calling a procedure, both +positional parameter and named parameter passings can be passed, +provided that all optional parameters are declared after the required +parameters and any optional parameter is bound using keyword parameter +passing. For example, if myproc1 is defined as: + +---- +(binaryfile bf) myproc1 (int i, string s="foo") +---- + +Then that procedure can be called like this, omitting the optional +---- +parameter s: +binaryfile mybf = myproc1(1); +---- + +or like this supplying a value for the optional parameter s: +---- +binaryfile mybf = myproc1 (1, s="bar"); +---- + +Atomic procedures +^^^^^^^^^^^^^^^^^ +An atomic procedure specifies how to invoke an external executable +program, and how logical data types are mapped to command line arguments. + +Atomic procedures are defined with the app keyword: + +---- +app (binaryfile bf) myproc (int i, string s="foo") { + myapp i s @filename(bf); +} +---- + +which specifies that myproc invokes an executable called myapp, +passing the values of i, s and the filename of bf as command line +arguments. + + +Compound procedures +^^^^^^^^^^^^^^^^^^^ +A compound procedure contains a set of Swift script statements: + +---- +(type2 b) foo_bar (type1 a) { + type3 c; + c = foo(a); // c holds the result of foo + b = bar(c); // c is an input to bar +} +---- + +Control Constructs +~~~~~~~~~~~~~~~~~~ +Swift script provides if, switch, foreach, and iterate +constructs, with syntax and semantics similar to comparable constructs +in other high-level languages. + +foreach +^^^^^^^ +The foreach construct is used to apply a block of statements to each +element in an array. For example: + +---- +check_order (file a[]) { + foreach f in a { + compute(f); + } +} +---- + +foreach statements have the general form: + +---- +foreach controlvariable (,index) in expression { + statements +} +---- + +The block of statements is evaluated once for each element in +expression which must be an array, with controlvariable set to the +corresponding element and index (if specified) set to the integer +position in the array that is being iterated over. + + +if +^^ +The if statement allows one of two blocks of statements to be +executed, based on a boolean predicate. if statements generally have +the form: + +---- +if(predicate) { + statements +} else { + statements +} +---- + +where predicate is a boolean expression. + +switch +^^^^^^ +switch expressions allow one of a selection of blocks to be chosen +based on the value of a numerical control expression. switch +statements take the general form: + +---- +switch(controlExpression) { + case n1: + statements2 + case n2: + statements2 + [...] + default: + statements +} +---- + +The control expression is evaluated, the resulting numerical value used +to select a corresponding case, and the statements belonging to that +case block are evaluated. If no case corresponds, then the statements +belonging to the default block are evaluated. + +Unlike C or Java switch statements, execution does not fall through to +subsequent case blocks, and no break statement is necessary at the +end of each block. + +Following is an example of a switch expression in Swift: + +---- +int score=60; +switch (score){ +case 100: + tracef("%s\n", "Bravo!"); +case 90: + tracef("%s\n", "very good"); +case 80: + tracef("%s\n", "good"); +case 70: + tracef("%s\n", "fair"); +default: + tracef("%s\n", "unknown grade"); + } +---- + +iterate +^^^^^^^ +iterate expressions allow a block of code to be evaluated repeatedly, +with an iteration variable being incremented after each iteration. + +The general form is: + +---- +iterate var { + statements; +} until (terminationExpression); +---- + +Here _var_ is the iteration variable. Its initial value is 0. After each iteration, +but before _terminationExpression_ is evaluated, the iteration variable is incremented. +This means that if the termination expression is a function of only the iteration variable, +the body will never be executed while the termination expression is true. + +Example: + +---- +iterate i { + trace(i); // will print 0, 1, and 2 +} until (i == 3); +---- + +Variables declared inside the body of _iterate_ can be used in the termination expression. +However, their values will reflect the values calculated as part of the last invocation +of the body, and may not reflect the incremented value of the iteration variable: + +---- +iterate i { + trace(i); + int j = i; // will print 0, 1, 2, and 3 +} until (j == 3); +---- + +Operators +~~~~~~~~~ +The following infix operators are available for use in Swift script +expressions. + +[options="header, autowidth"] +|================= +|operator|purpose +|+|numeric addition; string concatenation +|-|numeric subtraction +|*|numeric multiplication +|/|floating point division +|%/|integer division +|%%|integer remainder of division +|== !=|comparison and not-equal-to +|< > <= >=|numerical ordering +|&& \|\||boolean and, or +|!|boolean not +|================= + +Global constants +~~~~~~~~~~~~~~~~ + +At the top level of a Swift script program, the global modified may be +added to a declaration so that it is visible throughout the program, +rather than only at the top level of the program. This allows global +constants (of any type) to be defined. + +Imports +~~~~~~~ +The import directive can be used to import definitions from another +Swift file. + +For example, a Swift script might contain this: + +---- +import "defs"; +file f; +---- + +which would import the content of defs.swift: + +---- +type file; +---- + +Imported files are read from two places. They are either read from +the path that is specified from the import command, such as: +---- +import "definitions/file/defs"; +---- + +or they are read from the environment variable SWIFT_LIB. This +environment variable is used just like the PATH environment +variable. For example, if the command below was issued to the bash +shell: +---- +export SWIFT_LIB=${HOME}/Swift/defs:${HOME}/Swift/functions +---- +then the import command will check for the file defs.swift in both +"$\{HOME}/Swift/defs" and "$\{HOME}/Swift/functions" first before trying +the path that was specified in the import command. + +Other valid imports: +---- +import "../functions/func" +import "/home/user/Swift/definitions/defs" +---- + +There is no requirement that a module is imported only once. If a module +is imported multiple times, for example in different files, then Swift +will only process the imports once. + +Imports may contain anything that is valid in a Swift script, +including the code that causes remote execution. + +Mappers +~~~~~~~ +Mappers provide a mechanism to specify the layout of mapped datasets on +disk. This is needed when Swift must access files to transfer them to +remote sites for execution or to pass to applications. + +Swift provides a number of mappers that are useful in common cases. This +section details those mappers. For more complex cases, it is +possible to write application-specific mappers in Java and use them +within a Swift script. + + +The Single File Mapper +^^^^^^^^^^^^^^^^^^^^^^ +The single_file_mapper maps a single physical file to a dataset. + +[options="header, autowidth"] +|======================= +|Swift variable|Filename +|f|myfile +|f [0]|INVALID +|f.bar|INVALID +|======================= + +[options="header, autowidth"] +|================= +|parameter|meaning +|file|The location of the physical file including path and file name. +|================= + +Example: +---- +file f ; +---- + +There is a simplified syntax for this mapper: +---- +file f <"plot_outfile_param">; +---- + +The Simple Mapper +^^^^^^^^^^^^^^^^^ +The simple_mapper maps a file or a list of files into an array by +prefix, suffix, and pattern. If more than one file is matched, each of +the file names will be mapped as a subelement of the dataset. + +[options="header, autowidth"] +|==================== +|Parameter|Meaning +|location|A directory that the files are located. +|prefix|The prefix of the files +|suffix|The suffix of the files, for instance: ".txt" +|padding| The number of digits used to uniquely identify the mapped file. This is an optional parameter which defaults to 4. +|pattern|A UNIX glob style pattern, for instance: "\*foo*" would match +all file names that contain foo. When this mapper is used to specify +output filenames, pattern is ignored. +|==================== + +---- +type file; +file f ; +---- + +The above maps all filenames that start with foo and have an extension +.txt into file f. + +[options="header, autowidth"] +|================ +|Swift variable|Filename +|f|foo.txt +|================= +---- +type messagefile; + +(messagefile t) greeting(string m) {. + app { + echo m stdout=@filename(t); + } +} + +messagefile outfile ; + +outfile = greeting("hi"); +---- + +This will output the string 'hi' to the file foo.txt. + +The simple_mapper can be used to map arrays. It will map the array +index into the filename between the prefix and suffix. + +---- +type messagefile; + +(messagefile t) greeting(string m) { + app { + echo m stdout=@filename(t); + } +} + +messagefile outfile[] ; + +outfile[0] = greeting("hello"); +outfile[1] = greeting("middle"); +outfile[2] = greeting("goodbye"); +---- + +[options="header, autowidth"] +|======================= +|Swift variable|Filename +|outfile[0]|baz00.txt +|outfile[1]|baz01.txt +|outfile[2]|baz02.txt +|======================= + +simple_mapper can be used to map structures. It will map the name of +the structure member into the filename, between the prefix and the suffix. + +---- +type messagefile; + +type mystruct { + messagefile left; + messagefile right; +}; + +(messagefile t) greeting(string m) { + app { + echo m stdout=@filename(t); + } +} + +mystruct out ; + +out.left = greeting("hello"); +out.right = greeting("goodbye"); +---- + +This will output the string "hello" into the file qux.left.txt and the +string "goodbye" into the file qux.right.txt. + +[options="header, autowidth"] +|======================= +|Swift variable|Filename +|out.left|quxleft.txt +|out.right|quxright.txt +|======================= + +Concurrent Mapper +^^^^^^^^^^^^^^^^^ +The concurrent_mapper is almost the same as the simple mapper, except that +it is used to map an output file, and the filename generated will +contain an extract sequence that is unique. This mapper is the default +mapper for variables when no mapper is specified. + + +[options="header, autowidth"] +|================= +|Parameter|Meaning +|location|A directory that the files are located. +|prefix|The prefix of the files +|suffix|The suffix of the files, for instance: ".txt" +pattern A UNIX glob style pattern, for instance: "\*foo*" would match +all file names that contain foo. When this mapper is used to specify +output filenames, pattern is ignored. +|================= + +Example: +---- +file f1; +file f2 ; +---- +The above example would use concurrent mapper for f1 and f2, and +generate f2 filename with prefix "foo" and extension ".txt" + + +Filesystem Mapper +^^^^^^^^^^^^^^^^^ +The filesys_mapper is similar to the simple mapper, but maps a file or a +list of files to an array. Each of the filename is mapped as an element +in the array. The order of files in the resulting array is not defined. + +TODO: note on difference between location as a relative vs absolute path +w.r.t. staging to remote location - as mihael said: It's because you +specify that location in the mapper. Try location="." instead of +location="/sandbox/..." + +[options="header, autowidth"] +|====================== +|parameter|meaning +|location|The directory where the files are located. +|prefix|The prefix of the files +|suffix|The suffix of the files, for instance: ".txt" +|pattern|A UNIX glob style pattern, for instance: "\*foo*" would match +all file names that contain foo. +|====================== + +Example: +---- +file texts[] ; +---- + +The above example would map all filenames that start with "foo" and +have an extension ".txt" into the array texts. For example, if the +specified directory contains files: foo1.txt, footest.txt, +foo__1.txt, then the mapping might be: + +[options="header, autowidth"] +|================= +|Swift variable|Filename +|texts[0]|footest.txt +|texts[1]|foo1.txt +|texts[2]|foo__1.txt +|================= + +Fixed Array Mapper +^^^^^^^^^^^^^^^^^^ +The fixed_array_mapper maps from a string that contains a list of +filenames into a file array. + +[options="header, autowidth"] +|================= +|parameter|Meaning +|files|A string that contains a list of filenames, separated by space, +comma or colon +|================= + +Example: + +---- +file texts[] ; +---- + +would cause a mapping like this: + +[options="header, autowidth"] +|======== +|Swift variable|Filename +|texts[0]|file1.txt +|texts[1]|fileB.txt +|texts[2]|file3.txt +|======== + +Array Mapper +^^^^^^^^^^^^ +The array_mapper maps from an array of strings into a file + +[options="header, autowidth"] +|============ +|parameter|meaning +|files|An array of strings containing one filename per element +|============== + +Example: +---- +string s[] = [ "a.txt", "b.txt", "c.txt" ]; + +file f[] ; +---- + +This will establish the mapping: + +[options="header, autowidth"] +|========== +|Swift variable|Filename +|f[0]|a.txt +|f[1]|b.txt +|f[2]|c.txt +|========== + +Regular Expression Mapper +^^^^^^^^^^^^^^^^^^^^^^^^^ +The regexp_mapper transforms one file name to another using regular +expression matching. + +[options="header, autowidth"] +|========== +|parameter|meaning +|source|The source file name +|match|Regular expression pattern to match, use |()| to match whatever +regular expression is inside the parentheses, and indicate the start and +end of a group; the contents of a group can be retrieved with the +|\\number|special sequence (two backslashes are needed because the +backslash is an escape sequence introducer) +|transform|The pattern of the file name to transform to, use \number to +reference the group matched. +|========== + +Example: +---- +file s <"picture.gif">; +file f ; +---- + +This example transforms a file ending gif into one ending jpg and +maps that to a file. + +[options="header, autowidth"] +|=========== +|Swift variable|Filename +|f|picture.jpg +|============= + +Structured Regular Expression Mapper +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ + +The structured_regexp_mapper is similar to the regexp_mapper with the only +difference that it can be applied to arrays while the regexp_mapper cannot. + +[options="header, autowidth"] +|========== +|parameter|meaning +|source|The source file name +|match|Regular expression pattern to match, use |()| to match whatever +regular expression is inside the parentheses, and indicate the start and +end of a group; the contents of a group can be retrieved with the +|\\number|special sequence (two backslashes are needed because the +backslash is an escape sequence introducer) +|transform|The pattern of the file name to transform to, use \number to +reference the group matched. +|========== + +Example: +---- +file s[] ; + +file f[] ; +---- + +This example transforms all files in a list that end in gif to end in jpg and maps +the list to those files. + +CSV Mapper +^^^^^^^^^^ +The csv_mapper maps the content of a CSV (comma-separated value) file +into an array of structures. The dataset type needs to be correctly +defined to conform to the column names in the file. For instance, if the +file contains columns: name age GPA then the type needs to have member +elements like this: + +---- +type student { + file name; + file age; + file GPA; +} +---- + +If the file does not contain a header with column info, then the column +names are assumed as column1, column2, etc. + +[options="header, autowidth"] +|============ +|Parameter|Meaning +|file|The name of the CSV file to read mappings from. +|header|Whether the file has a line describing header info; default is |true| +|skip|The number of lines to skip at the beginning (after header line); +default is 0. +|hdelim|Header field delimiter; default is the value of the |delim| parameter +|delim|Content field delimiters; defaults are space, tab and comma +|============= + +Example: +---- +student stus[] ; +---- + +The above example would read a list of student info from file +"stu_list.txt" and map them into a student array. By default, the file +should contain a header line specifying the names of the columns. If +stu_list.txt contains the following: + +---- +name,age,gpa +101-name.txt, 101-age.txt, 101-gpa.txt +name55.txt, age55.txt, age55.txt +q, r, s +---- + +then some of the mappings produced by this example would be: + +[options="header, autowidth"] +|========= +|stus[0].name|101-name.txt +|stus[0].age|101-age.txt +|stus[0].gpa|101-gpa.txt +|stus[1].name|name55.txt +|stus[1].age|age55.txt +|stus[1].gpa|gpa55.txt +|stus[2].name|q +|stus[2].age|r +|stus[2].gpa|s +|========= + +External Mapper +^^^^^^^^^^^^^^^ +The external mapper, ext maps based on the output of a supplied Unix +executable. + +[option="header, autowidth"] +|============= +|parameter|meaning +|exec|The name of the executable (relative to the current directory, if +an absolute path is not specified) +|*|Other parameters are passed to the executable prefixed with a - symbol +|============== + +The output (stdout) of the executable should consist of two columns of data, +separated by a space. The first column should be the path of the mapped +variable, in Swift script syntax (for example [2] means the 2nd element of an +array) or the symbol $ to represent the root of the mapped variable. The +following table shows the symbols that should appear in the first column +corresponding to the mapping of different types of swift constructs such as +scalars, arrays and structs. + +[option="header, autowidth"] +|============= +|Swift construct|first column|second column +|scalar|$|file_name +|anarray[]|[]|file_name +|2dimarray[][]|[][]|file_name +|astruct.fld|fld|file_name +|astructarray[].fldname|[].fldname|file_name +|============== + +Example: With the following in mapper.sh, + +---- +#!/bin/bash +echo "[2] qux" +echo "[0] foo" +echo "[1] bar" +---- + +then a mapping statement: + +---- +student stus[] ; +---- + +would map + +[options="header, autowidth"] +|============ +|Swift variable|Filename +|stus[0]|foo +|stus[1]|bar +|stus[2]|qux +|=========== + +Advanced Example: The following mapper.sh is an advanced example of an external +mapper that maps a two-dimensional array to a directory of files. The files in +the said directory are identified by their names appended by a number between +000 and 099. The first index of the array maps to the first part of the +filename while the second index of the array maps to the second part of the +filename. + +---- +#!/bin/sh + +#take care of the mapper args +while [ $# -gt 0 ]; do + case $1 in + -location) location=$2;; + -padding) padding=$2;; + -prefix) prefix=$2;; + -suffix) suffix=$2;; + -mod_index) mod_index=$2;; + -outer_index) outer_index=$2;; + *) echo "$0: bad mapper args" 1>&2 + exit 1;; + esac + shift 2 +done + +for i in `seq 0 ${outer_index}` +do + for j in `seq -w 000 ${mod_index}` + do + fj=`echo ${j} | awk '{print $1 +0}'` #format j by removing leading zeros + echo "["${i}"]["${fj}"]" ${location}"/"${prefix}${j}${suffix} + done +done +---- + +The mapper definition is as follows: + +---- +file_dat dat_files[][] < ext; + exec="mapper.sh", + padding=3, + location="output", + prefix=@strcat( str_root, "_" ), + suffix=".dat", + outer_index=pid, + mod_index=n >; + +---- + +Assuming there are 4 files with name aaa, bbb, ccc, ddd and a mod_index of 10, +we will have 4x10=40 files mapped to a two-dimensional array in the following +pattern: + +[options="header, autowidth"] +|============ +|Swift variable|Filename +|stus[0][0]|output/aaa_000.dat +|stus[0][1]|output/aaa_001.dat +|stus[0][2]|output/aaa_002.dat +|stus[0][3]|output/aaa_003.dat +|...|... +|stus[0][9]|output/aaa_009.dat +|stus[1][0]|output/bbb_000.dat +|stus[1][1]|output/bbb_001.dat +|...|... +|stus[3][9]|output/ddd_009.dat +|=========== + +Executing app procedures +~~~~~~~~~~~~~~~~~~~~~~~~ +This section describes how Swift executes app procedures, and +requirements on the behaviour of application programs used in app +procedures. These requirements are primarily to ensure that the Swift +can run your application in different places and with the various fault +tolerance mechanisms in place. + + +Mapping of app semantics into unix process execution semantics +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ +This section describes how an app procedure invocation is translated +into a (remote) unix process execution. It does not describe the +mechanisms by which Swift performs that translation; that is described +in the next section. + +In this section, this example Swift script is used for reference: + +---- +type file; + +app (file o) count(file i) { + wc @i stdout=@o; +} + +file q <"input.txt">; +file r <"output.txt">; +---- + +The executable for wc will be looked up in tc.data. + +This unix executable will then be executed in some application +procedure workspace. This means: + +Each application procedure workspace will have an application workspace +directory. (TODO: can collapse terms application procedure workspace +and application workspace directory ? + +This application workspace directory will not be shared with any other +application procedure execution attempt; all application procedure +execution attempts will run with distinct application procedure +workspaces. (for the avoidance of doubt: If a Swift script procedure +invocation is subject to multiple application procedure execution +attempts (due to Swift-level restarts, retries or replication) then each +of those application procedure execution attempts will be made in a +different application procedure workspace. ) + +The application workspace directory will be a directory on a POSIX +filesystem accessible throughout the application execution by the +application executable. + +Before the application executable is executed: + + * The application workspace directory will exist. + + * The input files will exist inside the application workspace + directory (but not necessarily as direct children; there may be + subdirectories within the application workspace directory). + + * The input files will be those files mapped to input parameters + of the application procedure invocation. (In the example, this + means that the file input.txt will exist in the application + workspace directory) + + * For each input file dataset, it will be the case that @filename + or @filenames invoked with that dataset as a parameter will + return the path relative to the application workspace directory + for the file(s) that are associated with that dataset. (In the + example, that means that @i will evaluate to the path input.txt) + + * For each file-bound parameter of the Swift procedure invocation, + the associated files (determined by data type?) will always exist. + + * The input files must be treated as read only files. This may or + may not be enforced by unix file system permissions. They may or + may not be copies of the source file (conversely, they may be + links to the actual source file). + +During/after the application executable execution, the following must +be true: + + * If the application executable execution was successful (in the + opinion of the application executable), then the application + executable should exit with unix return code 0; if the + application executable execution was unsuccessful (in the opinion + of the application executable), then the application executable + should exit with unix return code not equal to 0. + + * Each file mapped from an output parameter of the Swift script + procedure call must exist. Files will be mapped in the same way as + for input files. + + * The output subdirectories will be precreated + before execution by Swift if defined within a Swift script such as the + location attribute of a mapper. App executables expect to make them if + they are referred to in the wrapper scripts. + + * Output produced by running the application executable on some + inputs should be the same no matter how many times, when or where + that application executable is run. 'The same' can vary depending + on application (for example, in an application it might be + acceptable for a PNG->JPEG conversion to produce different, + similar looking, output jpegs depending on the environment) + +Things to not assume: + + * Anything about the path of the application workspace directory + + * That either the application workspace directory will be deleted or + will continue to exist or will remain unmodified after execution + has finished + + * That files can be passed between application procedure + invocations through any mechanism except through files known to + Swift through the mapping mechanism (there is some exception here + for external datasets - there are a separate set of assertions + that hold for external datasets) + + * That application executables will run on any particular site of + those available, or than any combination of applications will run + on the same or different sites. + + +How Swift implements the site execution model +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +This section describes the implementation of the semantics described in +the previous section. + +Swift executes application procedures on one or more sites. + +Each site consists of: + + * worker nodes. There is some execution mechanism through which + the Swift client side executable can execute its wrapper script + on those worker nodes. This is commonly GRAM or Falkon or coasters. + + * a site-shared file system. This site shared filesystem is + accessible through some file transfer mechanism from the Swift + client side executable. This is commonly GridFTP or coasters. This + site shared filesystem is also accessible through the posix file + system on all worker nodes, mounted at the same location as seen + through the file transfer mechanism. Swift is configured with the + location of some site working directory on that site-shared file + system. + +There is no assumption that the site shared file system for one site is +accessible from another site. + +For each workflow run, on each site that is used by that run, a run +directory is created in the site working directory, by the Swift client +side. + +In that run directory are placed several subdirectories: + + * shared/ - site shared files cache + + * kickstart/ - when kickstart is used, kickstart record files for + each job that has generated a kickstart record. + + * info/ - wrapper script log files + + * status/ - job status files + + * jobs/ - application workspace directories (optionally placed + here - see below) + +Application execution looks like this: + +For each application procedure call: + +The Swift client side selects a site; copies the input files for that +procedure call to the site shared file cache if they are not already in +the cache, using the file transfer mechanism; and then invokes the +wrapper script on that site using the execution mechanism. + +The wrapper script creates the application workspace directory; places +the input files for that job into the application workspace directory +using either cp or ln -s (depending on a configuration option); +executes the application unix executable; copies output files from the +application workspace directory to the site shared directory using cp; +creates a status file under the status/ directory; and exits, +returning control to the Swift client side. Logs created during the +execution of the wrapper script are stored under the info/ directory. + +The Swift client side then checks for the presence of and deletes a +status file indicating success; and copies files from the site shared +directory to the appropriate client side location. + +The job directory is created (in the default mode) under the jobs/ +directory. However, it can be created under an arbitrary other path, +which allows it to be created on a different file system (such as a +worker node local file system in the case that the worker node has a +local file system). + +image:swift-site-model.png[] + +Technical overview of the Swift architecture +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +This section attempts to provide a technical overview of the Swift +architecture. + +Execution layer +^^^^^^^^^^^^^^^ +The execution layer causes an application program (in the form of a unix +executable) to be executed either locally or remotely. + +The two main choices are local unix execution and execution through +GRAM. Other options are available, and user provided code can also be +plugged in. + +The kickstart utility can be used to capture environmental +information at execution time to aid in debugging and provenance capture. + + +Swift script language compilation layer +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ +Step i: text to XML intermediate form parser/processor. parser written +in ANTLR - see resources/VDL.g. The XML Schema Definition (XSD) for the +intermediate language is in resources/XDTM.xsd. + +Step ii: XML intermediate form to Karajan workflow. Karajan.java - reads +the XML intermediate form. compiles to karajan workflow language - for +example, expressions are converted from Swift script syntax into Karajan +syntax, and function invocations become karajan function invocations +with various modifications to parameters to accomodate return parameters +and dataset handling. + + +Swift/karajan library layer +^^^^^^^^^^^^^^^^^^^^^^^^^^^ +Some Swift functionality is provided in the form of Karajan libraries +that are used at runtime by the Karajan workflows that the Swift +compiler generates. + +Function reference +~~~~~~~~~~~~~~~~~~ +This section details functions that are available for use in the +Swift language. + +arg +^^^ +Takes a command line parameter name as a string parameter and an +optional default value and returns the value of that string parameter +from the command line. If no default value is specified and the command +line parameter is missing, an error is generated. If a default value is +specified and the command line parameter is missing, @arg will return +the default value. + +Command line parameters recognized by @arg begin with exactly one +hyphen and need to be positioned after the script name. + +For example: + +---- +trace(arg("myparam")); +trace(arg("optionalparam", "defaultvalue")); +---- + +---- +$ swift arg.swift -myparam=hello +Swift v0.3-dev r1674 (modified locally) + +RunID: 20080220-1548-ylc4pmda +Swift trace: defaultvalue +Swift trace: hello +---- + +extractInt +^^^^^^^^^^ +extractInt(file) will read the specified file, parse an integer from +the file contents and return that integer. + +extractFloat +^^^^^^^^^^^^ +Similar to extractInt, extractFloat(file) will read the specified file, parse a float from +the file contents and return that float. + +filename +^^^^^^^^ +filename(v) will return a string containing the filename(s) for the +file(s) mapped to the variable v. When more than one filename is +returned, the filenames will be space separated inside a single string +return value. + +filenames +^^^^^^^^^ +filenames(v) will return multiple values containing the +filename(s) for the file(s) mapped to the variable v. + +length +^^^^^^ +length(array) will return the length of an array in Swift. This function will wait for all +elements in the array to be written before returning the length. + +readData +^^^^^^^^ +readData will read data from a specified file and assign it to Swift variable. The format of the input file is +controlled by the type of the return value. For scalar return types, such as +int, the specified file should contain a single value of that type. For arrays +of scalars, the specified file should contain one value per line. For complex types +of scalars, the file should contain two rows. The first row should be structure +member names separated by whitespace. The second row should be the +corresponding values for each structure member, separated by whitespace, in the +same order as the header row. For arrays of structs, the file should contain a +heading row listing structure member names separated by whitespace. There +should be one row for each element of the array, with structure member elements +listed in the same order as the header row and separated by whitespace. The following example shows how readData() can be used to populate an array of Swift struct-like complex type: + +---- +type Employee{ + string name; + int id; + string loc; +} + +Employee emps[] = readData("emps.txt"); +---- + +Where the contents of the "emps.txt" file are: + +---- +name id loc +Thomas 2222 Chicago +Gina 3333 Boston +Anne 4444 Houston +---- + +This will result in the array "emps" with 3 members. This can be processed within a Swift script using the foreach construct as follows: + +---- +foreach emp in emps{ + tracef("Employee %s lives in %s and has id %d", emp.name, emp.loc, emp.id); +} +---- + +readStructured +^^^^^^^^^^^^^^ +readStructured will read data from a specified file, like readdata, but +using a different file format more closely related to that used by the +ext mapper. + +Input files should list, one per line, a path into a Swift structure, +and the value for that position in the structure: + +---- +rows[0].columns[0] = 0 +rows[0].columns[1] = 2 +rows[0].columns[2] = 4 +rows[1].columns[0] = 1 +rows[1].columns[1] = 3 +rows[1].columns[2] = 5 +---- + +which can be read into a structure defined like this: + +---- +type vector { + int columns[]; +} + +type matrix { + vector rows[]; +} + +matrix m; + +m = readStructured("readStructured.in"); +---- + +(since Swift 0.7, was readData2(deprecated)) + +regexp +^^^^^^ +regexp(input,pattern,replacement) will apply regular expression +substitution using the Java java.util.regexp API +. +For example: + +---- +string v = regexp("abcdefghi", "c(def)g","monkey"); +---- + +will assign the value "abmonkeyhi" to the variable v. + +sprintf +^^^^^^^ +sprintf(spec, variable list) will generate a string based on the specified format. +----- +Example: string s = sprintf("\t%s\n", "hello"); +----- + +Format specifiers +[width="100%",frame="topbot"] +|====================== +|%%| % sign +|%M| Filename output (waits for close) +|%p| Format variable according to an internal format +|%b| Boolean output +|%f| Float output +|%i| int output +|%s| String output +|%k| Variable sKipped, no output +|%q| Array output +|====================== + +strcat +^^^^^^ +strcat(a,b,c,d,...) will return a string containing all of the +strings passed as parameters joined into a single string. There may be +any number of parameters. + +The + operator concatenates two strings: strcat(a,b) is the same as +a + b + +strcut +^^^^^^ +strcut(input,pattern) will match the regular expression in the +pattern parameter against the supplied input string and return the +section that matches the first matching parenthesised group. + +For example: +---- +string t = "my name is John and i like puppies."; +string name = strcut(t, "my name is ([^ ]*) "); +string out = strcat("Your name is ",name); +trace(out); +---- + +This will output the message: Your name is John. + +strjoin +^^^^^^^ +strjoin(array, delimiter) will combine the elements of an array +into a single string separated by a given delimiter. The array +passed to strjoin must be of a primitive type (string, int, float, +or boolean). It will not join the contents of an array of files. + +Example: +---- +string test[] = ["this", "is", "a", "test" ]; +string mystring = strjoin(test, " "); +tracef("%s\n", mystring); +---- + +This will print the string "this is a test". + +strsplit +^^^^^^^^ +strsplit(input,pattern) will split the input string based on +separators that match the given pattern and return a string array. + +Example: +---- +string t = "my name is John and i like puppies."; +string words[] = strsplit(t, "\\s"); +foreach word in words { + trace(word); +} +---- + +This will output one word of the sentence on each line (though not +necessarily in order, due to the fact that foreach iterations execute in +parallel). + +toInt +^^^^^ +toInt(input) will parse its input string into an integer. This can be +used with arg() to pass input parameters to a Swift script as +integers. + +toFloat +^^^^^^^ +toFloat(input) will parse its input string into a floating point number. This can be +used with arg() to pass input parameters to a Swift script as +floating point numbers. + +toString +^^^^^^^^ +toString(input) will parse its input into a string. Input can be an int, float, string, +or boolean. + +trace +^^^^^ +trace will log its parameters. By default these will appear on both +stdout and in the run log file. Some formatting occurs to produce the +log message. The particular output format should not be relied upon. + +tracef +^^^^^^ ++tracef(_spec_, _variable list_)+ will log its parameters as formatted +by the formatter _spec_. _spec_ must be a string. Checks the type of +the specifiers arguments against the variable list and allows for +certain escape characters. + +Example: +---- +int i = 3; +tracef("%s: %i\n", "the value is", i); +---- + +Specifiers: + ++%s+:: Format a string. ++%b+:: Format a boolean. ++%i+:: Format a number as an integer. ++%f+:: Format a number as a floating point number. ++%q+:: Format an array. ++%M+:: Format a mapped variable's filename. ++%k+:: Wait for the given variable but do not format it. ++%p+:: Format variable according to an internal format. + +Escape sequences: + ++\n+:: Produce a newline. ++\t+:: Produce a tab. + +Known issues: :: Swift does not correctly scan certain backslash +sequences such as +\\+. + +java +^^^^ +java(class_name, static_method, method_arg) will call a java static method of the class class_name. + +writeData +^^^^^^^^^ +writeData will write out data structures in the format described for +readData. The following example demonstrates how one can write a string "foo" into a file "writeDataPrimitive.out": + +---- +include::../../tests/language-behaviour/IO/writeDataPrimitive.swift[] +---- + Deleted: branches/release-0.95/docs/userguide/log-processing =================================================================== --- branches/release-0.95/docs/userguide/log-processing 2014-01-08 22:04:50 UTC (rev 7462) +++ branches/release-0.95/docs/userguide/log-processing 2014-01-08 22:13:41 UTC (rev 7463) @@ -1,154 +0,0 @@ - -Log Processing --------------- - -To properly generate log plots, you must enable VDL/Karajan logging. -This can be done by putting the following lines in log4j.properties file found in the /etc directory of Swift installation: - --------------------------------------- -log4j.logger.swift=DEBUG -log4j.logger.org.globus.cog.abstraction.coaster.service.job.manager.Cpu=DEBUG -log4j.logger.org.globus.cog.abstraction.coaster.service.job.manager.Block=DEBUG --------------------------------------- - -All the executables, zsh and perl scripts mentioned in the following steps are -available in the libexec/log-processing directory of your Swift installation. - -Log plotting -~~~~~~~~~~~~ - -Normalize event times in the log to the run start time -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -* Generate the normalized log, assuming the log is titled +swift-run.log+ - ------------------------------------------- -./normalize-log.pl file.contains.start.time swift-run.log > swift-run.norm ------------------------------------------- -TODO:In what format does the start time be in 'file.contains.start.time' - - -Make a basic load plot from Coasters Cpu log lines -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -. Normalize the log. -. Build up a load data file: -+ ------------------------------------------- -./cpu-job-load.pl < swift-run.norm > load.data ------------------------------------------- -. Plot with the JFreeChart-based plotter in usertools/plotter: -+ ------------------------------------------- -swift_plotter.zsh -s load.cfg load.eps load.data ------------------------------------------- -Note: Th load.cfg is available from swift/libexec/log-processing/ - - -Make a basic job completion plot from Coasters Cpu log lines -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -. Normalize the log. - -. Build up a completed data file: -+ ------------------------------------------- -./cpu-job-completed.pl < swift-run.norm > completed.data ------------------------------------------- - -. Plot with the JFreeChart-based plotter in usertools/plotter: -+ ------------------------------------------- -swift_plotter.zsh -s completed.cfg completed.eps completed.data ------------------------------------------- - -Make a basic Block allocation plot from Coasters Block log lines -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -. Normalize the log. - -. Build up a block allocation data file: -+ ------------------------------------------- -./block-level.pl < swift-run.norm > blocks.data ------------------------------------------- - -. Plot with the JFreeChart-based plotter in usertools/plotter: -+ ------------------------------------------- -swift_plotter.zsh -s blocks.{cfg,eps,data} ------------------------------------------- - -Make a job runtime distribution plot from Coasters Cpu log lines -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -. Normalize the log. - -. Build up a job runtime file: -+ ------------------------------------------- -./extract-times.pl < swift-run.norm > times.data ------------------------------------------- - -. Put the job runtimes into 1-second buckets: -+ ------------------------------------------- -./ buckets.pl 1 times.data > buckets.data ------------------------------------------- - -. Plot with the JFreeChart-based plotter in usertools/plotter: -+ ------------------------------------------- -swift_plotter.zsh -s buckets.cfg buckets.eps buckets.data ------------------------------------------- - - -Meaning and interpretation of Swift log messages -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - -A Swift log file is typically a text file with the name of the Swift run and -its timestamp in the filename and an extension ".log". In addition, a ".rlog" -file is Swift's resume log which is used by Swift when a run is resumed using -the "-resume" option. The .rlog file is only for Swift's internal purpose and -not to be interpreted by the user. - -Each line in the log file typically consists of three parts. The first part -is the timestamp, the second is the type of log message and the third is the -message itself. The types of log messages follows the java log4j standard types -of TRACE, DEBUG, INFO, WARN, ERROR and FATAL. - -//// -This section lists the various Swift log messages and explains the meaning and -likely interpretation of those messages. Note that the list is not -comprehensive at this time. Also note that we will ignore the timestamps here. - -. _DEBUG Loader arguments: [-sites.file, sites.xml, -config, cf, -tc.file, tc, postproc-gridftp.swift]_ - Swift commandline arguments -. _DEBUG Loader Max heap: 5592449024_ - The java runtime heap size -. _DEBUG textfiles BEGIN_ - A dump of config and source files associated with this run -. _DEBUG VDL2ExecutionContext Stack dump_ -. _INFO SetFieldValue Set_ -. _INFO get__site STARTCOMPOUND thread=0-8 name=get__site_ -. _INFO vdl:execute START thread=0-8-0 tr=_ -. _INFO GlobalSubmitQueue No global submit throttle set. Using default (1024)_ -. _DEBUG vdl:execute2 THREAD_ASSOCIATION jobid=getsite-ymj72ook thread=0-8-0-1 host=localhost replicationGroup=xmj72ook_ -. _DEBUG vdl:execute2 JOB_START jobid=getsite-ymj72ook tr=getsite arguments=[644] tmpdir=postproc-gridftp-20120319-0942-adf1o1u2/jobs/y/getsite-ymj72ook host=localhost_ -. _INFO GridExec TASK_DEFINITION_ -. _WARN RemoteConfiguration Find: http://140.221.8.62:38260_ -. _INFO AbstractStreamKarajanChannel$Multiplexer Multiplexer 0 started_ -. _INFO AbstractStreamKarajanChannel$Multiplexer (0) Scheduling SC-null for addition_ -. _INFO AbstractStreamKarajanChannel Channel configured_ -. _INFO MetaChannel MetaChannel: 651528505[1478354072: {}] -> null.bind -> SC-null_ -. _INFO ReadBuffer Will ask for 1 buffers for a size of 6070_ -. _INFO ThrottleManager O maxBuffers=512, crtBuffers=0, allowedTransfers=256, active=0, suspended=0_ -. _INFO ThrottleManager mem=113.54 MB, heap=482.88 MB, maxHeap=5.21 GB_ -. _INFO ThrottleManager I maxBuffers=512, crtBuffers=0, allowedTransfers=256, active=0, suspended=0_ -. _INFO PerformanceDiagnosticInputStream [MEM] Heap total: 482.88 MB, Heap used: 118.58 MB_ -Heap sizes for performance -. _INFO vdl:execute END_SUCCESS thread=0-8-0 tr=getsite_ -The job ended successfully -. _INFO WeightedHostScoreScheduler CONTACT_SELECTED host=localhost, score=99.854_ -. _ -//// Deleted: branches/release-0.95/docs/userguide/mappers =================================================================== --- branches/release-0.95/docs/userguide/mappers 2014-01-08 22:04:50 UTC (rev 7462) +++ branches/release-0.95/docs/userguide/mappers 2014-01-08 22:13:41 UTC (rev 7463) @@ -1,898 +0,0 @@ -Mappers -~~~~~~~ -When a DSHandle represents a data file (or container of datafiles), it -is associated with a mapper. The mapper is used to identify which files -belong to that DSHandle. - -A dataset's physical representation is declared by a mapping descriptor, -which defines how each element in the dataset's logical schema is stored -in, and fetched from, physical structures such as directories, files, -and remote servers. - -Mappers are parameterized to take into account properties such as -varying dataset location. In order to access a dataset, we need to know -three things: its type, its mapping, and the value(s) of any -parameter(s) associated with the mapping descriptor. For example, if we -want to describe a dataset, of type imagefile, and whose physical -representation is a file called "file1.bin" located at -"/home/yongzh/data/", then the dataset might be declared as follows: - ----- -imagefile f1 ----- - -The above example declares a dataset called f1, which uses a single file -mapper to map a file from a specific location. - -Swift has a simplified syntax for this case, since -single_file_mapper is frequently used: - ----- -binaryfile f1<"/home/yongzh/data/file1.bin"> ----- - -Swift comes with a number of mappers that handle common mapping -patterns. These are documented in the mappers section of this -guide. - -More technical details about Swift script -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -The syntax of Swift script has a superficial resemblance to C and Java. -For example, { and } characters are used to enclose blocks of statements. - -A Swift script consists of a number of statements. Statements may -declare types, procedures and variables, assign values to variables, and -express operations over arrays. - - -Variables -^^^^^^^^^ -Variables in Swift scripts are declared to be of a specific type. -Assignments to those variables must be data of that type. Swift script -variables are single-assignment - a value may be assigned to a variable -at most once. This assignment can happen at declaration time or later on -in execution. When an attempt to read from a variable that has not yet -been assigned is made, the code performing the read is suspended until -that variable has been written to. This forms the basis for Swift's -ability to parallelise execution - all code will execute in parallel -unless there are variables shared between the code that cause sequencing. - - -Variable Declarations -^^^^^^^^^^^^^^^^^^^^^ -Variable declaration statements declare new variables. They can -optionally assign a value to them or map those variables to on-disk files. - -Declaration statements have the general form: - ----- -typename variablename ( | = initialValue ) ; ----- - -The format of the mapping expression is defined in the Mappers section. -initialValue may be either an expression or a procedure call that -returns a single value. - -Variables can also be declared in a multivalued-procedure statement, -described in another section. - - -Assignment Statements -^^^^^^^^^^^^^^^^^^^^^ -Assignment statements assign values to previously declared variables. -Assignments may only be made to variables that have not already been -assigned. Assignment statements have the general form: - ----- -variable = value; ----- - -where value can be either an expression or a procedure call that returns -a single value. - -Variables can also be assigned in a multivalued-procedure statement, -described in another section. - - -Procedures -~~~~~~~~~~ -There are two kinds of procedure: An atomic procedure, which describes -how an external program can be executed; and compound procedures which -consist of a sequence of Swift script statements. - -A procedure declaration defines the name of a procedure and its input -and output parameters. Swift script procedures can take multiple inputs -and produce multiple outputs. Inputs are specified to the right of the -function name, and outputs are specified to the left. For example: - ----- -(type3 out1, type4 out2) myproc (type1 in1, type2 in2) ----- - -The above example declares a procedure called myproc, which has two -inputs in1 (of type type1) and in2 (of type type2) and two -outputs out1 (of type type3) and out2 (of type type4). - -A procedure input parameter can be an optional parameter in which case -it must be declared with a default value. When calling a procedure, both -positional parameter and named parameter passings can be passed, -provided that all optional parameters are declared after the required -parameters and any optional parameter is bound using keyword parameter -passing. For example, if myproc1 is defined as: - ----- -(binaryfile bf) myproc1 (int i, string s="foo") ----- - -Then that procedure can be called like this, omitting the optional ----- -parameter s: -binaryfile mybf = myproc1(1); ----- - -or like this supplying a value for the optional parameter s: ----- -binaryfile mybf = myproc1 (1, s="bar"); ----- - -Atomic procedures -^^^^^^^^^^^^^^^^^ -An atomic procedure specifies how to invoke an external executable -program, and how logical data types are mapped to command line arguments. - -Atomic procedures are defined with the app keyword: - ----- -app (binaryfile bf) myproc (int i, string s="foo") { - myapp i s @filename(bf); -} ----- - -which specifies that myproc invokes an executable called myapp, -passing the values of i, s and the filename of bf as command line -arguments. - - -Compound procedures -^^^^^^^^^^^^^^^^^^^ -A compound procedure contains a set of Swift script statements: - ----- -(type2 b) foo_bar (type1 a) { - type3 c; - c = foo(a); // c holds the result of foo - b = bar(c); // c is an input to bar -} ----- - -Control Constructs -~~~~~~~~~~~~~~~~~~ -Swift script provides if, switch, foreach, and iterate -constructs, with syntax and semantics similar to comparable constructs -in other high-level languages. - - -foreach -^^^^^^^ -The foreach construct is used to apply a block of statements to each -element in an array. For example: - ----- -check_order (file a[]) { - foreach f in a { - compute(f); - } -} ----- - -foreach statements have the general form: - ----- -foreach controlvariable (,index) in expression { - statements -} ----- - -The block of statements is evaluated once for each element in -expression which must be an array, with controlvariable set to the -corresponding element and index (if specified) set to the integer -position in the array that is being iterated over. - - -if -^^ -The if statement allows one of two blocks of statements to be -executed, based on a boolean predicate. if statements generally have -the form: - ----- -if(predicate) { - statements -} else { - statements -} ----- - -where predicate is a boolean expression. - - -switch -^^^^^^ - -switch expressions allow one of a selection of blocks to be chosen -based on the value of a numerical control expression. switch -statements take the general form: - ----- -switch(controlExpression) { - case n1: - statements2 - case n2: - statements2 - [...] - default: - statements -} ----- - -The control expression is evaluated, the resulting numerical value used -to select a corresponding case, and the statements belonging to that -case block are evaluated. If no case corresponds, then the statements -belonging to the default block are evaluated. - -Unlike C or Java switch statements, execution does not fall through to -subsequent case blocks, and no break statement is necessary at the -end of each block. - -Following is an example of a switch expression in Swift: - ----- -int score=60; -switch (score){ -case 100: - tracef("%s\n", "Bravo!"); -case 90: - tracef("%s\n", "very good"); -case 80: - tracef("%s\n", "good"); -case 70: - tracef("%s\n", "fair"); -default: - tracef("%s\n", "unknown grade"); - } ----- - -iterate -^^^^^^^ -iterate expressions allow a block of code to be evaluated repeatedly, -with an iteration variable being incremented after each iteration. - -The general form is: - ----- -iterate var { - statements; -} until (terminationExpression); ----- - -Here _var_ is the iteration variable. Its initial value is 0. After each iteration, -but before _terminationExpression_ is evaluated, the iteration variable is incremented. -This means that if the termination expression is a function of only the iteration variable, -the body will never be executed while the termination expression is true. - -Example: - ----- -iterate i { - trace(i); // will print 0, 1, and 2 -} until (i == 3); ----- - -Variables declared inside the body of _iterate_ can be used in the termination expression. -However, their values will reflect the values calculated as part of the last invocation -of the body, and may not reflect the incremented value of the iteration variable: - ----- -iterate i { - trace(i); - int j = i; // will print 0, 1, 2, and 3 -} until (j == 3); ----- - -Operators -~~~~~~~~~ -The following infix operators are available for use in Swift script -expressions. - -[options="header, autowidth"] -|================= -|operator|purpose -|+|numeric addition; string concatenation -|-|numeric subtraction -|*|numeric multiplication -|/|floating point division -|%/|integer division -|%%|integer remainder of division -|== !=|comparison and not-equal-to -|< > <= >=|numerical ordering -|&& \|\||boolean and, or -|!|boolean not -|================= - -Global constants -~~~~~~~~~~~~~~~~ - -At the top level of a Swift script program, the global modified may be -added to a declaration so that it is visible throughout the program, -rather than only at the top level of the program. This allows global -constants (of any type) to be defined. (since Swift 0.10) - - -Imports -~~~~~~~ -The import directive can be used to import definitions from another -Swift file. - -For example, a Swift script might contain this: - ----- -import "defs"; -file f; ----- - -which would import the content of defs.swift: - ----- -type file; ----- - -Imported files are read from two places. They are either read from -the path that is specified from the import command, such as: ----- -import "definitions/file/defs"; ----- - -or they are read from the environment variable SWIFT_LIB. This -environment variable is used just like the PATH environment -variable. For example, if the command below was issued to the bash -shell: ----- -export SWIFT_LIB=${HOME}/Swift/defs:${HOME}/Swift/functions ----- -then the import command will check for the file defs.swift in both -"$\{HOME}/Swift/defs" and "$\{HOME}/Swift/functions" first before trying -the path that was specified in the import command. - -Other valid imports: ----- -import "../functions/func" -import "/home/user/Swift/definitions/defs" ----- - -There is no requirement that a module is imported only once. If a module -is imported multiple times, for example in different files, then Swift -will only process the imports once. - -Imports may contain anything that is valid in a Swift script, -including the code that causes remote execution. - -Mappers -------- -Mappers provide a mechanism to specify the layout of mapped datasets on -disk. This is needed when Swift must access files to transfer them to -remote sites for execution or to pass to applications. - -Swift provides a number of mappers that are useful in common cases. This -section details those mappers. For more complex cases, it is -possible to write application-specific mappers in Java and use them -within a Swift script. - - -The single file mapper -~~~~~~~~~~~~~~~~~~~~~~ -The single_file_mapper maps a single physical file to a dataset. - -[options="header, autowidth"] -|======================= -|Swift variable|Filename -|f|myfile -|f [0]|INVALID -|f.bar|INVALID -|======================= - -[options="header, autowidth"] -|================= -|parameter|meaning -|file|The location of the physical file including path and file name. -|================= - -Example: ----- -file f ; ----- - -There is a simplified syntax for this mapper: ----- -file f <"plot_outfile_param">; ----- - -The simple mapper -~~~~~~~~~~~~~~~~~ -The simple_mapper maps a file or a list of files into an array by -prefix, suffix, and pattern. If more than one file is matched, each of -the file names will be mapped as a subelement of the dataset. - -[options="header, autowidth"] -|==================== -|Parameter|Meaning -|location|A directory that the files are located. -|prefix|The prefix of the files -|suffix|The suffix of the files, for instance: ".txt" -|padding| The number of digits used to uniquely identify the mapped file. This is an optional parameter which defaults to 4. -|pattern|A UNIX glob style pattern, for instance: "\*foo*" would match -all file names that contain foo. When this mapper is used to specify -output filenames, pattern is ignored. -|==================== - ----- -type file; -file f ; ----- - -The above maps all filenames that start with foo and have an extension -.txt into file f. - -[options="header, autowidth"] -|================ -|Swift variable|Filename -|f|foo.txt -|================= ----- -type messagefile; - -(messagefile t) greeting(string m) {. - app { - echo m stdout=@filename(t); - } -} - -messagefile outfile ; - -outfile = greeting("hi"); ----- - -This will output the string 'hi' to the file foo.txt. - -The simple_mapper can be used to map arrays. It will map the array -index into the filename between the prefix and suffix. - ----- -type messagefile; - -(messagefile t) greeting(string m) { - app { - echo m stdout=@filename(t); - } -} - -messagefile outfile[] ; - -outfile[0] = greeting("hello"); -outfile[1] = greeting("middle"); -outfile[2] = greeting("goodbye"); ----- - -[options="header, autowidth"] -|======================= -|Swift variable|Filename -|outfile[0]|baz00.txt -|outfile[1]|baz01.txt -|outfile[2]|baz02.txt -|======================= - -simple_mapper can be used to map structures. It will map the name of -the structure member into the filename, between the prefix and the suffix. - ----- -type messagefile; - -type mystruct { - messagefile left; - messagefile right; -}; - -(messagefile t) greeting(string m) { - app { - echo m stdout=@filename(t); - } -} - -mystruct out ; - -out.left = greeting("hello"); -out.right = greeting("goodbye"); ----- - -This will output the string "hello" into the file qux.left.txt and the -string "goodbye" into the file qux.right.txt. - -[options="header, autowidth"] -|======================= -|Swift variable|Filename -|out.left|quxleft.txt -|out.right|quxright.txt -|======================= - -concurrent mapper -~~~~~~~~~~~~~~~~~ -The concurrent_mapper is almost the same as the simple mapper, except that -it is used to map an output file, and the filename generated will -contain an extract sequence that is unique. This mapper is the default -mapper for variables when no mapper is specified. - - -[options="header, autowidth"] -|================= -|Parameter|Meaning -|location|A directory that the files are located. -|prefix|The prefix of the files -|suffix|The suffix of the files, for instance: ".txt" -pattern A UNIX glob style pattern, for instance: "\*foo*" would match -all file names that contain foo. When this mapper is used to specify -output filenames, pattern is ignored. -|================= - -Example: ----- -file f1; -file f2 ; ----- -The above example would use concurrent mapper for f1 and f2, and -generate f2 filename with prefix "foo" and extension ".txt" - - -File system mapper -~~~~~~~~~~~~~~~~~~ -The filesys_mapper is similar to the simple mapper, but maps a file or a -list of files to an array. Each of the filename is mapped as an element -in the array. The order of files in the resulting array is not defined. - -TODO: note on difference between location as a relative vs absolute path -w.r.t. staging to remote location - as mihael said: It's because you -specify that location in the mapper. Try location="." instead of -location="/sandbox/..." - -[options="header, autowidth"] -|====================== -|parameter|meaning -|location|The directory where the files are located. -|prefix|The prefix of the files -|suffix|The suffix of the files, for instance: ".txt" -|pattern|A UNIX glob style pattern, for instance: "\*foo*" would match -all file names that contain foo. -|====================== - -Example: ----- -file texts[] ; ----- - -The above example would map all filenames that start with "foo" and -have an extension ".txt" into the array texts. For example, if the -specified directory contains files: foo1.txt, footest.txt, -foo__1.txt, then the mapping might be: - -[options="header, autowidth"] -|================= -|Swift variable|Filename -|texts[0]|footest.txt -|texts[1]|foo1.txt -|texts[2]|foo__1.txt -|================= - - - -fixed array mapper -~~~~~~~~~~~~~~~~~~ -The fixed_array_mapper maps from a string that contains a list of -filenames into a file array. - -[options="header, autowidth"] -|================= -|parameter|Meaning -|files|A string that contains a list of filenames, separated by space, -comma or colon -|================= - -Example: - ----- -file texts[] ; ----- - -would cause a mapping like this: - -[options="header, autowidth"] -|======== -|Swift variable|Filename -|texts[0]|file1.txt -|texts[1]|fileB.txt -|texts[2]|file3.txt -|======== - -array mapper -~~~~~~~~~~~~ -The array_mapper maps from an array of strings into a file - -[options="header, autowidth"] -|============ -|parameter|meaning -|files|An array of strings containing one filename per element -|============== - -Example: ----- -string s[] = [ "a.txt", "b.txt", "c.txt" ]; - -file f[] ; ----- - -This will establish the mapping: - -[options="header, autowidth"] -|========== -|Swift variable|Filename -|f[0]|a.txt -|f[1]|b.txt -|f[2]|c.txt -|========== - -regular expression mapper -~~~~~~~~~~~~~~~~~~~~~~~~~ -The regexp_mapper transforms one file name to another using regular -expression matching. - -[options="header, autowidth"] -|========== -|parameter|meaning -|source|The source file name -|match|Regular expression pattern to match, use |()| to match whatever -regular expression is inside the parentheses, and indicate the start and -end of a group; the contents of a group can be retrieved with the -|\\number|special sequence (two backslashes are needed because the -backslash is an escape sequence introducer) -|transform|The pattern of the file name to transform to, use \number to -reference the group matched. -|========== - -Example: ----- -file s <"picture.gif">; -file f ; ----- - -This example transforms a file ending gif into one ending jpg and -maps that to a file. - -[options="header, autowidth"] -|=========== -|Swift variable|Filename -|f|picture.jpg -|============= - -structured regular expression mapper -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - -The structured_regexp_mapper is similar to the regexp_mapper with the only -difference that it can be applied to arrays while the regexp_mapper cannot. - -[options="header, autowidth"] -|========== -|parameter|meaning -|source|The source file name -|match|Regular expression pattern to match, use |()| to match whatever -regular expression is inside the parentheses, and indicate the start and -end of a group; the contents of a group can be retrieved with the -|\\number|special sequence (two backslashes are needed because the -backslash is an escape sequence introducer) -|transform|The pattern of the file name to transform to, use \number to -reference the group matched. -|========== - -Example: ----- -file s[] ; - -file f[] ; ----- - -This example transforms all files in a list that end in gif to end in jpg and maps -the list to those files. - -csv mapper -~~~~~~~~~~ -The csv_mapper maps the content of a CSV (comma-separated value) file -into an array of structures. The dataset type needs to be correctly -defined to conform to the column names in the file. For instance, if the -file contains columns: name age GPA then the type needs to have member -elements like this: - ----- -type student { - file name; - file age; - file GPA; -} ----- - -If the file does not contain a header with column info, then the column -names are assumed as column1, column2, etc. - -[options="header, autowidth"] -|============ -|Parameter|Meaning -|file|The name of the CSV file to read mappings from. -|header|Whether the file has a line describing header info; default is |true| -|skip|The number of lines to skip at the beginning (after header line); -default is 0. -|hdelim|Header field delimiter; default is the value of the |delim| parameter -|delim|Content field delimiters; defaults are space, tab and comma -|============= - -Example: ----- -student stus[] ; ----- - -The above example would read a list of student info from file -"stu_list.txt" and map them into a student array. By default, the file -should contain a header line specifying the names of the columns. If -stu_list.txt contains the following: - ----- -name,age,gpa -101-name.txt, 101-age.txt, 101-gpa.txt -name55.txt, age55.txt, age55.txt -q, r, s ----- - -then some of the mappings produced by this example would be: - -[options="header, autowidth"] -|========= -|stus[0].name|101-name.txt -|stus[0].age|101-age.txt -|stus[0].gpa|101-gpa.txt -|stus[1].name|name55.txt -|stus[1].age|age55.txt -|stus[1].gpa|gpa55.txt -|stus[2].name|q -|stus[2].age|r -|stus[2].gpa|s -|========= - -external mapper -~~~~~~~~~~~~~~~ -The external mapper, ext maps based on the output of a supplied Unix -executable. - -[option="header, autowidth"] -|============= -|parameter|meaning -|exec|The name of the executable (relative to the current directory, if -an absolute path is not specified) -|*|Other parameters are passed to the executable prefixed with a - symbol -|============== - -The output (stdout) of the executable should consist of two columns of data, -separated by a space. The first column should be the path of the mapped -variable, in Swift script syntax (for example [2] means the 2nd element of an -array) or the symbol $ to represent the root of the mapped variable. The -following table shows the symbols that should appear in the first column -corresponding to the mapping of different types of swift constructs such as -scalars, arrays and structs. - -[option="header, autowidth"] -|============= -|Swift construct|first column|second column -|scalar|$|file_name -|anarray[]|[]|file_name -|2dimarray[][]|[][]|file_name -|astruct.fld|fld|file_name -|astructarray[].fldname|[].fldname|file_name -|============== - -Example: With the following in mapper.sh, - ----- -#!/bin/bash -echo "[2] qux" -echo "[0] foo" -echo "[1] bar" ----- - -then a mapping statement: - ----- -student stus[] ; ----- - -would map - -[options="header, autowidth"] -|============ -|Swift variable|Filename -|stus[0]|foo -|stus[1]|bar -|stus[2]|qux -|=========== - -Advanced Example: The following mapper.sh is an advanced example of an external -mapper that maps a two-dimensional array to a directory of files. The files in -the said directory are identified by their names appended by a number between -000 and 099. The first index of the array maps to the first part of the -filename while the second index of the array maps to the second part of the -filename. - ----- -#!/bin/sh - -#take care of the mapper args -while [ $# -gt 0 ]; do - case $1 in - -location) location=$2;; - -padding) padding=$2;; - -prefix) prefix=$2;; - -suffix) suffix=$2;; - -mod_index) mod_index=$2;; - -outer_index) outer_index=$2;; - *) echo "$0: bad mapper args" 1>&2 - exit 1;; - esac - shift 2 -done - -for i in `seq 0 ${outer_index}` -do - for j in `seq -w 000 ${mod_index}` - do - fj=`echo ${j} | awk '{print $1 +0}'` #format j by removing leading zeros - echo "["${i}"]["${fj}"]" ${location}"/"${prefix}${j}${suffix} - done -done ----- - -The mapper definition is as follows: - ----- -file_dat dat_files[][] < ext; - exec="mapper.sh", - padding=3, - location="output", - prefix=@strcat( str_root, "_" ), - suffix=".dat", - outer_index=pid, - mod_index=n >; - ----- - -Assuming there are 4 files with name aaa, bbb, ccc, ddd and a mod_index of 10, -we will have 4x10=40 files mapped to a two-dimensional array in the following -pattern: - -[options="header, autowidth"] -|============ -|Swift variable|Filename -|stus[0][0]|output/aaa_000.dat -|stus[0][1]|output/aaa_001.dat -|stus[0][2]|output/aaa_002.dat -|stus[0][3]|output/aaa_003.dat -|...|... -|stus[0][9]|output/aaa_009.dat -|stus[1][0]|output/bbb_000.dat -|stus[1][1]|output/bbb_001.dat -|...|... -|stus[3][9]|output/ddd_009.dat -|=========== Modified: branches/release-0.95/docs/userguide/overview =================================================================== --- branches/release-0.95/docs/userguide/overview 2014-01-08 22:04:50 UTC (rev 7462) +++ branches/release-0.95/docs/userguide/overview 2014-01-08 22:13:41 UTC (rev 7463) @@ -1,10 +1,5 @@ Overview -------- -This manual provides reference material for Swift: the Swift -language and the Swift runtime system. For introductory material, -consult the -http://www.ci.uchicago.edu/swift/guides/trunk/tutorial/tutorial.html[Swift tutorial]. - Swift is a data-flow oriented coarse grained scripting language that supports dataset typing and mapping, dataset iteration, conditional branching, and procedural composition. Deleted: branches/release-0.95/docs/userguide/reliability_mechanisms =================================================================== --- branches/release-0.95/docs/userguide/reliability_mechanisms 2014-01-08 22:04:50 UTC (rev 7462) +++ branches/release-0.95/docs/userguide/reliability_mechanisms 2014-01-08 22:13:41 UTC (rev 7463) @@ -1,101 +0,0 @@ -Reliability mechanisms ----------------------- -This section details reliabilty mechanisms in Swift: retries, restarts -and replication. - -Retries -~~~~~~~ -If an application procedure execution fails, Swift will attempt that -execution again repeatedly until it succeeds, up until the limit defined -in the execution.retries configuration property. - -Site selection will occur for retried jobs in the same way that it -happens for new jobs. Retried jobs may run on the same site or may run -on a different site. - -If the retry limit execution.retries is reached for an application -procedure, then that application procedure will fail. This will cause -the entire run to fail - either immediately (if the lazy.errors -property is false) or after all other possible work has been attempted -(if the lazy.errors property is true). - -With or without lazy errors, each app is re-tried -times before it is considered failed for good. An app that has failed -but still has retries left will appear as "Failed but can retry". - -Without lazy errors, once the first (time-wise) app has run out of -retries, the whole run is stopped and the error reported. - -With lazy errors, if an app fails after all retries, its outputs are -marked as failed. All apps that depend on failed outputs will also fail -and their outputs marked as failed. All apps that have non-failed -outputs will continue to run normally until everything that can proceed -completes. - -For example, if you have: - ----- -foreach x in [1:1024] { - app(x); -} ----- - -... and if the first started app fails, all the other ones can still -continue, and if they don't otherwise fail, the run will only terminate -when all 1023 of them will complete. - -So basically the idea behind lazy errors is to run EVERYTHING that can -safely be run before stopping. - -Some types of errors (such as internal swift errors happening in an app -thread) will still stop the run immediately even in lazy errors mode. -But we all know there are no such things as internal swift errors :) - - - -Restarts -~~~~~~~~ -If a run fails, Swift can resume the program from the point of failure. -When a run fails, a restart log file will be left behind in a file named -using the unique job ID and a .rlog extension. This restart log can -then be passed to a subsequent Swift invocation using the -resume -parameter. Swift will resume execution, avoiding execution of -invocations that have previously completed successfully. The Swift -source file and input data files should not be modified between runs. - -Every run creates a restart log file with a named composed of the file -name of the workflow being executed, an invocation ID, a numeric ID, and -the .rlog extension. For example, example.swift, when executed, -could produce the following restart log file: -example-ht0adgi315l61.0.rlog. Normally, if the run completes -successfully, the restart log file is deleted. If however the workflow -fails, swift can use the restart log file to continue execution from a -point before the failure occurred. In order to restart from a restart -log file, the -resume logfile argument can be used after the -Swift script file name. Example: - ----- -$ swift -resume example-ht0adgi315l61.0.rlog example.swift. ----- - -Replication -~~~~~~~~~~~ -When an execution job has been waiting in a site queue for a certain -period of time, Swift can resubmit replicas of that job (up to the limit -defined in the replication.limit configuration property). When any of -those jobs moves from queued to active state, all of the other replicas -will be cancelled. - -This is intended to deal with situations where some sites have a -substantially longer (sometimes effectively infinite) queue time than -other sites. Selecting those slower sites can cause a very large delay -in overall run time. - -Replication can be enabled by setting the replication.enabled -configuration property to true. The maximum number of replicas that -will be submitted for a job is controlled by the replication.limit -configuration property. - -When replication is enabled, Swift will also enforce the maxwalltime -profile setting for jobs as documented in the profiles section. - Deleted: branches/release-0.95/docs/userguide/site_catalog =================================================================== --- branches/release-0.95/docs/userguide/site_catalog 2014-01-08 22:04:50 UTC (rev 7462) +++ branches/release-0.95/docs/userguide/site_catalog 2014-01-08 22:13:41 UTC (rev 7463) @@ -1,186 +0,0 @@ -The Site Catalog - sites.xml ----------------------------- -The site catalog lists details of each site that Swift can use. The -default file contains one entry for local execution, and a large number -of commented-out example entries for other sites. - -By default, the site catalog is stored in etc/sites.xml. This path can -be overridden with the sites.file configuration property, either in -the Swift configuration file or on the command line. - -The sites file is formatted as XML. It consists of elements, -one for each site that Swift will use. - -Pool element -~~~~~~~~~~~~ -Each pool element must have a handle attribute, giving a symbolic -name for the site. This can be any name, but must correspond to entries -for that site in the transformation catalog. - -Optionally, the gridlaunch attribute can be used to specify the path -to kickstart on the site. - -Each pool must specify a file transfer method, an execution method and -a remote working directory. Optionally, profile settings can -be specified. - -File transfer method -~~~~~~~~~~~~~~~~~~~~ -Transfer methods are specified with either the element or -the element. - -To use gridftp or local filesystem copy, use the element: - ----- - ----- - -The url attribute may specify a GridFTP server, using the gsiftp URI -scheme; or it may specify that filesystem copying will be used (which -assumes that the site has access to the same filesystem as the -submitting machine) using the URI local://localhost. - -Filesystem access using scp (the SSH copy protocol) can be specified -using the element: - ----- - ----- - -For additional ssh configuration information, see the ssh execution -provider documentation below. - -Filesystem access using CoG coasters can be also be -specified using the element. More detail about -configuring that can be found in the CoG coasters section. - -Execution method -~~~~~~~~~~~~~~~~ -Execution methods may be specified either with the or - element. - -The element can be used to specify execution through -GRAM2. For example, - ----- - ----- -The universe attribute should always be set to vanilla. The url -attribute should specify the name of the GRAM2 gatekeeper host, and the -name of the jobmanager to use. The major attribute should always be set -to 2. - -The element can be used to specify execution through other -execution providers: - -To use GRAM4, specify the gt4 provider. For example: - ----- - ----- - -The url attribute should specify the GRAM4 submission site. The -jobmanager attribute should specify which GRAM4 jobmanager will be used. - -For local execution, the local provider should be used, like this: - ----- - ----- - -For PBS execution, the pbs provider should be used: - ----- - ----- - -The GLOBUS::queue profile key can be used to -specify which PBS queue jobs will be submitted to. - -For execution through a local Condor installation, the condor provider -should be used. This provider can run jobs either in the default vanilla -universe, or can use Condor-G to run jobs on remote sites. - -When running locally, only the element needs to be specified: - ----- - ----- - -When running with Condor-G, it is necessary to specify the Condor grid -universe and the contact string for the remote site. For example: - ----- - - grid - gt2 belhaven-1.renci.org/jobmanager-fork ----- - -For execution through SSH, the ssh provider should be used: - ----- - ----- -with configuration made in ~/.ssh/auth.defaults with the string -'www11.i2u2.org' changed to the appropriate host name: - ----- -www11.i2u2.org.type=key -www11.i2u2.org.username=hategan -www11.i2u2.org.key=/home/mike/.ssh/i2u2portal -www11.i2u2.org.passphrase=XXXX ----- - -For execution using the CoG Coaster mechanism, the coaster -provider should be used: - ----- - ----- - -More details about configuration of coasters can be found in the section -on coasters. - -Work directory -~~~~~~~~~~~~~~ -The workdirectory element specifies where on the site files can be -stored. - ----- -/tmp/swift.workdir ----- - -This directory must be accessible through the specified transfer mechanism and -also mounted on all worker nodes that will be used for execution. A shared -cluster scratch filesystem is appropriate for this. Note that you need to -specify _absolute pathname_ for this field. - - -Scratch -~~~~~~~ - -The scratch element takes in a value of a directory on a shared filesystem. For example: - ----- -/work/01739/ketan/lab/swift/myscratch ----- - -The scratch element specifies that the underlying Swift wrapper will copy the -input files into the scratch directory and the job will be run from that -directory. In the absence of scratch tag, Swift will run the job from -workdirectory by creating symlinks to input files in a shared directory. - -Profiles -~~~~~~~~ -Profile keys can be specified using the element. -For example: - ----- -fast ----- - -The site catalog format is an evolution of the VDS site catalog format -which is documented here -. - Deleted: branches/release-0.95/docs/userguide/transformation_catalog =================================================================== --- branches/release-0.95/docs/userguide/transformation_catalog 2014-01-08 22:04:50 UTC (rev 7462) +++ branches/release-0.95/docs/userguide/transformation_catalog 2014-01-08 22:13:41 UTC (rev 7463) @@ -1,55 +0,0 @@ -The Transformation Catalog - tc -------------------------------- -The transformation catalog lists where application executables are -located on execution sites. - -By default, the site catalog is stored in etc/tc.data. This path can -be overridden with the tc.file configuration property, either in the -Swift configuration file or on the command line. - -The format is one line per executable per site, with fields separated by space or tab. - -Some example entries: ----- -localhost cat /bin/cat null null null -localhost vasp /home/ketan/runvasp.sh null null null -fusion echo /bin/echo INSTALLED INTEL32::LINUX null -TGUC touch /usr/bin/touch INSTALLED INTEL32::LINUX GLOBUS::maxwalltime="0:1" ----- - -The fields are: site, transformation name, executable path, installation -status, platform, and profile entries. - -The site field should correspond to a site name listed in the sites catalog. - -The transformation name should correspond to the transformation name -used in a Swift script app procedure. - -The executable path should specify where the executable is -located on that site. - -The installation status and platform fields are not used. Set them to -INSTALLED and INTEL32::LINUX respectively. Alternatively, they could be set to null. - -The profiles field should be set to null if no profile entries are to -be specified. - -Setting Environment Variables -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -It is often useful to set environment variables when running an application. -This can be accomplished using *env* in the profile entry. For example, -the following application sets an environment variable called R_LIBS to -/home/user/R_libs. - ------ -localhost R /usr/bin/R INSTALLED INTEL32::LINUX env::R_LIBS=/home/user/r_libs ------ - -Setting Multiple Profiles -~~~~~~~~~~~~~~~~~~~~~~~~~ -Multiple profile entries can be added by using a semicolon. The example below -sets two environment variables: R_LIBS and R_HOME. - ------ -localhost R /usr/bin/R INSTALLED INTEL32::LINUX env::R_LIBS=/home/user/r_libs;env::R_HOME=/home/user/r ------ Modified: branches/release-0.95/docs/userguide/userguide.txt =================================================================== --- branches/release-0.95/docs/userguide/userguide.txt 2014-01-08 22:04:50 UTC (rev 7462) +++ branches/release-0.95/docs/userguide/userguide.txt 2014-01-08 22:13:41 UTC (rev 7463) @@ -3,41 +3,16 @@ :toc: :icons: -:website: http://www.ci.uchicago.edu/swift/guides/userguide.php :numbered: include::overview[] +include::gettingStarted[] + include::language[] -include::mappers[] +include::configuration[] -include::commands[] +include::debugging[] -include::app_procedures[] - -include::configuration_properties[] - -include::profiles[] - -include::site_catalog[] - -include::transformation_catalog[] - -include::build_options[] - -include::kickstart[] - -include::reliability_mechanisms[] - -include::clustering[] - -include::coasters[] - -include::howto_tips[] - -include::cdm[] - -include::log-processing[] - -link:http://www.ci.uchicago.edu/swift/docs/index.php[home] +link:http://swift-lang.org/docs/index.php[home] From ketan at ci.uchicago.edu Fri Jan 24 10:34:22 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Fri, 24 Jan 2014 10:34:22 -0600 (CST) Subject: [Swift-commit] r7507 - in SwiftApps/swift-galaxy: . swift swift/lungsearch Message-ID: <20140124163422.DD5E1178884@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-24 10:34:22 -0600 (Fri, 24 Jan 2014) New Revision: 7507 Added: SwiftApps/swift-galaxy/README SwiftApps/swift-galaxy/swift/ SwiftApps/swift-galaxy/swift/2stage.xml SwiftApps/swift-galaxy/swift/Illinois.tgz SwiftApps/swift-galaxy/swift/catsn.swift SwiftApps/swift-galaxy/swift/catsn.xml SwiftApps/swift-galaxy/swift/cf SwiftApps/swift-galaxy/swift/data.txt SwiftApps/swift-galaxy/swift/datlist.txt SwiftApps/swift-galaxy/swift/delog SwiftApps/swift-galaxy/swift/dogftp.sh SwiftApps/swift-galaxy/swift/dssat.xml SwiftApps/swift-galaxy/swift/edrevised.mod SwiftApps/swift-galaxy/swift/face-it/ SwiftApps/swift-galaxy/swift/gftplist.swift SwiftApps/swift-galaxy/swift/lungsearch/ SwiftApps/swift-galaxy/swift/lungsearch/Consortium_expr_full_pheno_no_affx.csv SwiftApps/swift-galaxy/swift/lungsearch/HG-U133A_2.na33.annot.csv SwiftApps/swift-galaxy/swift/lungsearch/egsearch.swift SwiftApps/swift-galaxy/swift/lungsearch/exsearch.py SwiftApps/swift-galaxy/swift/lungsearch/lungsearch.xml SwiftApps/swift-galaxy/swift/lungsearch/midway.cdm SwiftApps/swift-galaxy/swift/lungsearch/midway.cf SwiftApps/swift-galaxy/swift/lungsearch/midway.xml SwiftApps/swift-galaxy/swift/lungsearch/swift-lungsearch SwiftApps/swift-galaxy/swift/lungsearch/tc.data SwiftApps/swift-galaxy/swift/lungsearch/wrapper.sh SwiftApps/swift-galaxy/swift/mysim.xml SwiftApps/swift-galaxy/swift/plotswiftlogs SwiftApps/swift-galaxy/swift/powergrid.xml SwiftApps/swift-galaxy/swift/print_results_revised.inc SwiftApps/swift-galaxy/swift/set_data_ascii.inc SwiftApps/swift-galaxy/swift/sites.xml SwiftApps/swift-galaxy/swift/statswift.xml SwiftApps/swift-galaxy/swift/stochmodel.run SwiftApps/swift-galaxy/swift/swift-2stage SwiftApps/swift-galaxy/swift/swift-3stage SwiftApps/swift-galaxy/swift/swift-catsn SwiftApps/swift-galaxy/swift/swift-galaxy SwiftApps/swift-galaxy/swift/swift-mysim SwiftApps/swift-galaxy/swift/swift-powergrid SwiftApps/swift-galaxy/swift/swift-stats SwiftApps/swift-galaxy/swift/swift-try SwiftApps/swift-galaxy/swift/swift.xml SwiftApps/swift-galaxy/swift/tc SwiftApps/swift-galaxy/swift/tmp.out SwiftApps/swift-galaxy/swift/try.xml SwiftApps/swift-galaxy/swift/wind_data.dat Log: Swift galaxy directory Added: SwiftApps/swift-galaxy/README =================================================================== --- SwiftApps/swift-galaxy/README (rev 0) +++ SwiftApps/swift-galaxy/README 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,7 @@ +=How to install this into Galaxy= + +=Notes= + +1. Untar Illinois.tgz before running powergrid application +2. The csvs in the lungsearch application are not complete, they contain just the first 50 lines + Added: SwiftApps/swift-galaxy/swift/2stage.xml =================================================================== --- SwiftApps/swift-galaxy/swift/2stage.xml (rev 0) +++ SwiftApps/swift-galaxy/swift/2stage.xml 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,23 @@ + + A 2 stage Swift workflow + + + swift-2stage "$site" "$data" "$n" "$html_file.files_path" "$log_file" "$html_file" + + + + + + + + + + + + + + + + + + Added: SwiftApps/swift-galaxy/swift/Illinois.tgz =================================================================== (Binary files differ) Property changes on: SwiftApps/swift-galaxy/swift/Illinois.tgz ___________________________________________________________________ Added: svn:mime-type + application/octet-stream Added: SwiftApps/swift-galaxy/swift/catsn.swift =================================================================== --- SwiftApps/swift-galaxy/swift/catsn.swift (rev 0) +++ SwiftApps/swift-galaxy/swift/catsn.swift 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,11 @@ +type file; + +app (file o) cat (file i) { + cat @i stdout=@o; +} +file out[]; + +foreach j in [1:1000] { + file data; + out[j] = cat(data); +} Added: SwiftApps/swift-galaxy/swift/catsn.xml =================================================================== --- SwiftApps/swift-galaxy/swift/catsn.xml (rev 0) +++ SwiftApps/swift-galaxy/swift/catsn.xml 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,22 @@ + + A Swift tool to run the catsn workflow + + + swift-catsn "$site" "$data" "$n" "$html_file.files_path" "$log_file" "$html_file" + + + + + + + + + + + + + + + + + Added: SwiftApps/swift-galaxy/swift/cf =================================================================== --- SwiftApps/swift-galaxy/swift/cf (rev 0) +++ SwiftApps/swift-galaxy/swift/cf 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,7 @@ +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=0 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +use.wrapper.staging=false Added: SwiftApps/swift-galaxy/swift/data.txt =================================================================== --- SwiftApps/swift-galaxy/swift/data.txt (rev 0) +++ SwiftApps/swift-galaxy/swift/data.txt 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,7508 @@ +2013-08-27 01:13:50,544+0000 DEBUG Loader setting: sites.file to: /tmp/sites.xml +2013-08-27 01:13:50,546+0000 DEBUG Loader setting: tc.file to: /tmp/tc +2013-08-27 01:13:50,546+0000 INFO Loader VERSION Swift trunk swift-r7005 cog-r3767 +2013-08-27 01:13:50,546+0000 INFO Loader RUN_ID 20130827-0113-r1k3cjmc +2013-08-27 01:13:50,547+0000 INFO Loader ARGUMENTS [-sites.file, /tmp/sites.xml, -tc.file, /tmp/tc, -config, /tmp/cf, /tmp/inference4galaxy.swift, -batch=20] +2013-08-27 01:13:50,547+0000 INFO Loader MAX_HEAP 954466304 +2013-08-27 01:13:50,547+0000 INFO Loader GLOBUS_HOSTNAME swift.rcc.uchicago.edu +2013-08-27 01:13:50,547+0000 INFO Loader CWD /scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/. +2013-08-27 01:13:50,547+0000 DEBUG Loader SWIFT_CONFIGURATION Swift configuration ([/tmp/cf]): {throttle.score.job.factor=4, throttle.file.operations=8, throttle.host.submit=2, pgraph.node.options=color="seagreen", style="filled", wrapper.parameter.mode=args, provenance.log=false, throttle.submit=4, ticker.prefix=Progress: time:, provider.staging.pin.swiftfiles=false, clustering.enabled=false, replication.min.queue.time=60, sites.file=/tmp/sites.xml, cdm.broadcast.mode=file, kickstart.enabled=maybe, wrapperlog.always.transfer=true, caching.algorithm=LRU, use.provider.staging=true, use.wrapper.staging=true, status.mode=files, clustering.min.time=60, ticker.date.format=, kickstart.always.transfer=false, file.gc.enabled=true, throttle.transfers=4, execution.retries=1, sitedir.keep=true, pgraph.graph.options=splines="compound", rankdir="TB", replication.enabled=false, clustering.queue.delay=4, pgraph=false, mapping.checker=on, wrapper.invocation.mode=absolute, tc.file=/tmp/tc, replication.limit=3, lazy.errors=false} +2013-08-27 01:13:50,547+0000 INFO Loader SITES_FILE /tmp/sites.xml +2013-08-27 01:13:50,548+0000 DEBUG textfiles BEGIN SITES: + + + + sandyb + 16 + 02:00:00 + 7500 + 100 + 100 + 2 + 1 + 1 + .31 + 10000 + /tmp/swift.work + + + + +2013-08-27 01:13:50,548+0000 DEBUG textfiles END SITES: +2013-08-27 01:13:50,548+0000 INFO Loader TC_FILE /tmp/tc +2013-08-27 01:13:50,548+0000 DEBUG textfiles BEGIN TC: +midway echo echo +midway cat cat +midway gensample /home/maheshwari/powergridapps/bin/gensample.py +midway runampl /home/maheshwari/powergridapps/bin/run_ampl.py +midway runampl_l /home/maheshwari/powergridapps/bin/run_ampl_l.py +midway runampl_u /home/maheshwari/powergridapps/bin/run_ampl_u.py + + +2013-08-27 01:13:50,548+0000 DEBUG textfiles END TC: +2013-08-27 01:13:50,549+0000 DEBUG textfiles BEGIN SWIFTSCRIPT: +type file; + +app ( file _obj_out, file _xhat_out1, file _xhat_out2, file _ampl_res, file _out) + ampl_app ( int _s, + int _fix_x, + file _stoch_model, + file _illinois, + file _edrevised_model, + file _ascii_data, + file _print_results, + file _wind_data + ) { + runampl _s _fix_x @_stoch_model @_xhat_out1 @_xhat_out2 @_obj_out @_illinois @_edrevised_model @_ascii_data @_print_results @_ampl_res @_wind_data stdout=@_out; +} + +app (file _obj_out, file _ampl_l_res, file _out) ampl_app_L ( + int _s, + int _fix_x, + file _stoch_model, + file _illinois, + file _edrevised_model, + file _ascii_data, + file _print_results + ) { + + runampl_l _s _fix_x @_stoch_model @_obj_out @_illinois @_edrevised_model @_ascii_data @_print_results @_ampl_l_res stdout=@_out; +} + +app (file _obj_out, file _ampl_u_res, file _out) ampl_app_U ( + int _s, + int _fix_x, + file _stoch_model, + file _xhat, + file _illinois, + file _edrevised_model, + file _ascii_data, + file _print_results, + file _wind_data + ) { + + runampl_u _s _fix_x @_stoch_model @_xhat @_obj_out @_illinois @_edrevised_model @_ascii_data @_print_results @_ampl_u_res @_wind_data stdout=@_out; +} + +file stoch_model<"/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run">; +file edrevised_model<"/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod">; +file ascii_data<"/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc">; +file print_results<"/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc">; +file illinois<"/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz">; +file wind_data<"/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat">; + +file out[] ; +file obj_out[] ; +file ampl_res[] ; + +file xhat_out1[] ; +file xhat_out2[] ; + +file out_l[][][] ; +file obj_out_l[][][] ; +file ampl_l_res[][][] ; +file xhat_out_l1[][][] ; +file xhat_out_l2[][][] ; + +file out_u[][][] ; +file obj_out_u[][][] ; +file ampl_u_res[][][] ; +#file upper_out[][][] ; +#file lower_out[][][] ; + +int nS[] = [10]; //number of scenario sweeps +int Batch = @toInt(@arg("batch", "20")); + +foreach S, idxs in nS{ +(obj_out[idxs], xhat_out1[idxs], xhat_out2[idxs], ampl_res[idxs], out[idxs]) = ampl_app (S, 0, stoch_model, illinois, edrevised_model, ascii_data, print_results, wind_data); + + +foreach B, idxb in [10:Batch:10]{ + foreach k in [0:B]{ + (obj_out_l[idxs][idxb][k], xhat_out_l1[idxs][idxb][k], xhat_out_l2[idxs][idxb][k], ampl_l_res[idxs][idxb][k], out_l[idxs][idxb][k]) = ampl_app (S, 0, stoch_model, illinois, edrevised_model, ascii_data, print_results, wind_data); + + (obj_out_u[idxs][idxb][k], ampl_u_res[idxs][idxb][k], out_u[idxs][idxb][k]) = ampl_app_U(S, 1, stoch_model, xhat_out1[idxs], illinois, edrevised_model, ascii_data, print_results, wind_data); + +} +} +} + + +2013-08-27 01:13:50,549+0000 DEBUG textfiles END SWIFTSCRIPT: +2013-08-27 01:13:50,549+0000 INFO Loader /tmp/inference4galaxy.swift: source file is new. Recompiling. +2013-08-27 01:13:50,549+0000 DEBUG Loader kmlversion is >acc037ee-2fa6-4e7c-a365-1d291ab1f8a6-no-provenance< +2013-08-27 01:13:50,549+0000 DEBUG Loader build version is >acc037ee-2fa6-4e7c-a365-1d291ab1f8a6-no-provenance< +2013-08-27 01:13:51,281+0000 INFO Warnings Warning: The @ syntax for function invocation is deprecated +2013-08-27 01:13:51,848+0000 INFO Loader RUN_START +2013-08-27 01:13:51,850+0000 INFO SwiftExecutor swift.home = /home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/.. +2013-08-27 01:13:51,860+0000 INFO swift Using sites file: /tmp/sites.xml +2013-08-27 01:13:51,886+0000 INFO swift Using tc.data: /tmp/tc +2013-08-27 01:13:51,956+0000 INFO SiteCatalogParser [Error] sites.xml, line 1, col 9: cvc-elt.1: Cannot find the declaration of element 'config'. +2013-08-27 01:13:51,983+0000 INFO AbstractScheduler Setting resources to: {midway=midway} +2013-08-27 01:13:51,986+0000 INFO swift Swift trunk swift-r7005 cog-r3767 + +2013-08-27 01:13:51,987+0000 INFO swift RUNID id=run:20130827-0113-r1k3cjmc +2013-08-27 01:13:52,006+0000 INFO RuntimeStats$ProgressTicker +2013-08-27 01:13:52,020+0000 INFO CreateArray CREATEARRAY START array=dataset:20130827-0113-jpj1ff9e:720000000001 +2013-08-27 01:13:52,020+0000 INFO CreateArray CREATEARRAY MEMBER array=dataset:20130827-0113-jpj1ff9e:720000000001 index=0 member=dataset:20130827-0113-jpj1ff9e:720000000002 +2013-08-27 01:13:52,020+0000 INFO CreateArray CREATEARRAY COMPLETED array=dataset:20130827-0113-jpj1ff9e:720000000001 +2013-08-27 01:13:52,020+0000 INFO AbstractDataNode All partial closes for Batch:int = 20 - Closed have happened. Closing fully. +2013-08-27 01:13:52,022+0000 INFO AbstractDataNode All partial closes for nS:int[int] - Closed have happened. Closing fully. +2013-08-27 01:13:52,023+0000 DEBUG swift FOREACH_IT_START line=73 thread=R-42-0 +2013-08-27 01:13:52,023+0000 DEBUG swift SCOPE thread=R-42-0 +2013-08-27 01:13:52,023+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0x2 name=ampl_app +2013-08-27 01:13:52,026+0000 DEBUG swift FOREACH_IT_START line=77 thread=R-42-0-1-0 +2013-08-27 01:13:52,026+0000 DEBUG swift SCOPE thread=R-42-0-1-0 +2013-08-27 01:13:52,026+0000 DEBUG swift FOREACH_IT_START line=77 thread=R-42-0-1x2 +2013-08-27 01:13:52,026+0000 DEBUG swift SCOPE thread=R-42-0-1x2 +2013-08-27 01:13:52,026+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1-0x2 +2013-08-27 01:13:52,026+0000 DEBUG swift SCOPE thread=R-42-0-1-0x2 +2013-08-27 01:13:52,026+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-0 +2013-08-27 01:13:52,026+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1-0-1 +2013-08-27 01:13:52,026+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x3 +2013-08-27 01:13:52,026+0000 DEBUG swift SCOPE thread=R-42-0-1-0-1 +2013-08-27 01:13:52,026+0000 DEBUG swift SCOPE thread=R-42-0-1x3 +2013-08-27 01:13:52,026+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-2 +2013-08-27 01:13:52,026+0000 DEBUG swift SCOPE thread=R-42-0-1x2-0 +2013-08-27 01:13:52,026+0000 DEBUG swift SCOPE thread=R-42-0-1x2-2 +2013-08-27 01:13:52,026+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-3 +2013-08-27 01:13:52,026+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1-0-4 +2013-08-27 01:13:52,026+0000 DEBUG swift SCOPE thread=R-42-0-1x2-3 +2013-08-27 01:13:52,026+0000 DEBUG swift SCOPE thread=R-42-0-1-0-4 +2013-08-27 01:13:52,026+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1-0-3 +2013-08-27 01:13:52,027+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-5 +2013-08-27 01:13:52,027+0000 DEBUG swift SCOPE thread=R-42-0-1x2-5 +2013-08-27 01:13:52,027+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1-0-6 +2013-08-27 01:13:52,027+0000 DEBUG swift SCOPE thread=R-42-0-1-0-6 +2013-08-27 01:13:52,027+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-6 +2013-08-27 01:13:52,027+0000 DEBUG swift SCOPE thread=R-42-0-1x2-6 +2013-08-27 01:13:52,027+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1-0-7 +2013-08-27 01:13:52,027+0000 DEBUG swift SCOPE thread=R-42-0-1-0-7 +2013-08-27 01:13:52,027+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-7 +2013-08-27 01:13:52,027+0000 DEBUG swift SCOPE thread=R-42-0-1x2-7 +2013-08-27 01:13:52,027+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1-0-8 +2013-08-27 01:13:52,027+0000 DEBUG swift SCOPE thread=R-42-0-1-0-8 +2013-08-27 01:13:52,027+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1-0x3 name=ampl_app +2013-08-27 01:13:52,027+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1-0-1x2 name=ampl_app_U +2013-08-27 01:13:52,027+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x4 name=ampl_app_U +2013-08-27 01:13:52,027+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-8 +2013-08-27 01:13:52,027+0000 DEBUG swift SCOPE thread=R-42-0-1x2-8 +2013-08-27 01:13:52,027+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1-0-1-0 name=ampl_app +2013-08-27 01:13:52,027+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x3-0 name=ampl_app +2013-08-27 01:13:52,027+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-0-1 name=ampl_app_U +2013-08-27 01:13:52,027+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-0x2 name=ampl_app +2013-08-27 01:13:52,027+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1-0-9 +2013-08-27 01:13:52,027+0000 DEBUG swift SCOPE thread=R-42-0-1-0-9 +2013-08-27 01:13:52,027+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-9 +2013-08-27 01:13:52,027+0000 DEBUG swift SCOPE thread=R-42-0-1x2-9 +2013-08-27 01:13:52,027+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1-0-10 +2013-08-27 01:13:52,026+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1-0-2 +2013-08-27 01:13:52,027+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-2-1 name=ampl_app_U +2013-08-27 01:13:52,027+0000 DEBUG swift SCOPE thread=R-42-0-1-0-2 +2013-08-27 01:13:52,027+0000 DEBUG swift SCOPE thread=R-42-0-1-0-10 +2013-08-27 01:13:52,027+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-3-1 name=ampl_app_U +2013-08-27 01:13:52,027+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-10 +2013-08-27 01:13:52,027+0000 DEBUG swift SCOPE thread=R-42-0-1x2-10 +2013-08-27 01:13:52,027+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-11 +2013-08-27 01:13:52,027+0000 DEBUG swift SCOPE thread=R-42-0-1x2-11 +2013-08-27 01:13:52,028+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-3-0 name=ampl_app +2013-08-27 01:13:52,028+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1-0-4-1 name=ampl_app_U +2013-08-27 01:13:52,028+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-12 +2013-08-27 01:13:52,028+0000 DEBUG swift SCOPE thread=R-42-0-1x2-12 +2013-08-27 01:13:52,028+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-5-1 name=ampl_app_U +2013-08-27 01:13:52,028+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1-0-4-0 name=ampl_app +2013-08-27 01:13:52,028+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-5-0 name=ampl_app +2013-08-27 01:13:52,028+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1-0-6-0 name=ampl_app +2013-08-27 01:13:52,028+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-13 +2013-08-27 01:13:52,028+0000 DEBUG swift SCOPE thread=R-42-0-1x2-13 +2013-08-27 01:13:52,028+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1-0-6-1 name=ampl_app_U +2013-08-27 01:13:52,028+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-14 +2013-08-27 01:13:52,028+0000 DEBUG swift SCOPE thread=R-42-0-1x2-14 +2013-08-27 01:13:52,028+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-6-0 name=ampl_app +2013-08-27 01:13:52,029+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1-0x2-1 name=ampl_app_U +2013-08-27 01:13:52,029+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-15 +2013-08-27 01:13:52,029+0000 DEBUG swift SCOPE thread=R-42-0-1x2-15 +2013-08-27 01:13:52,029+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-16 +2013-08-27 01:13:52,029+0000 DEBUG swift SCOPE thread=R-42-0-1x2-16 +2013-08-27 01:13:52,029+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-17 +2013-08-27 01:13:52,029+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1-0-7-1 name=ampl_app_U +2013-08-27 01:13:52,029+0000 DEBUG swift SCOPE thread=R-42-0-1x2-17 +2013-08-27 01:13:52,029+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-18 +2013-08-27 01:13:52,029+0000 DEBUG swift SCOPE thread=R-42-0-1x2-18 +2013-08-27 01:13:52,029+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-19 +2013-08-27 01:13:52,029+0000 DEBUG swift SCOPE thread=R-42-0-1x2-19 +2013-08-27 01:13:52,029+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-20 +2013-08-27 01:13:52,029+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-7-1 name=ampl_app_U +2013-08-27 01:13:52,029+0000 DEBUG swift SCOPE thread=R-42-0-1x2-20 +2013-08-27 01:13:52,029+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-7-0 name=ampl_app +2013-08-27 01:13:52,027+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-2-0 name=ampl_app +2013-08-27 01:13:52,027+0000 DEBUG swift SCOPE thread=R-42-0-1-0-3 +2013-08-27 01:13:52,026+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1-0-5 +2013-08-27 01:13:52,026+0000 DEBUG swift FOREACH_IT_START line=78 thread=R-42-0-1x2-4 +2013-08-27 01:13:52,029+0000 DEBUG swift SCOPE thread=R-42-0-1-0-5 +2013-08-27 01:13:52,029+0000 DEBUG swift SCOPE thread=R-42-0-1x2-4 +2013-08-27 01:13:52,030+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1-0-8-1 name=ampl_app_U +2013-08-27 01:13:52,030+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-6-1 name=ampl_app_U +2013-08-27 01:13:52,030+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-8-1 name=ampl_app_U +2013-08-27 01:13:52,030+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-8-0 name=ampl_app +2013-08-27 01:13:52,030+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1-0-2-1 name=ampl_app_U +2013-08-27 01:13:52,030+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1-0-10-1 name=ampl_app_U +2013-08-27 01:13:52,030+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-10-0 name=ampl_app +2013-08-27 01:13:52,030+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-10-1 name=ampl_app_U +2013-08-27 01:13:52,030+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1-0-9-0 name=ampl_app +2013-08-27 01:13:52,030+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1-0-10-0 name=ampl_app +2013-08-27 01:13:52,030+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-11-0 name=ampl_app +2013-08-27 01:13:52,031+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-12-0 name=ampl_app +2013-08-27 01:13:52,031+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-13-0 name=ampl_app +2013-08-27 01:13:52,031+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1-0-9-1 name=ampl_app_U +2013-08-27 01:13:52,031+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-14-0 name=ampl_app +2013-08-27 01:13:52,032+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-15-0 name=ampl_app +2013-08-27 01:13:52,032+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1-0-2-0 name=ampl_app +2013-08-27 01:13:52,032+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-9-0 name=ampl_app +2013-08-27 01:13:52,032+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1-0-7-0 name=ampl_app +2013-08-27 01:13:52,032+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-11-1 name=ampl_app_U +2013-08-27 01:13:52,032+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-15-1 name=ampl_app_U +2013-08-27 01:13:52,032+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-16-0 name=ampl_app +2013-08-27 01:13:52,032+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1-0-8-0 name=ampl_app +2013-08-27 01:13:52,033+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-17-1 name=ampl_app_U +2013-08-27 01:13:52,033+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-17-0 name=ampl_app +2013-08-27 01:13:52,033+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-18-1 name=ampl_app_U +2013-08-27 01:13:52,033+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-18-0 name=ampl_app +2013-08-27 01:13:52,033+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-19-1 name=ampl_app_U +2013-08-27 01:13:52,033+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-20-1 name=ampl_app_U +2013-08-27 01:13:52,033+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-19-0 name=ampl_app +2013-08-27 01:13:52,033+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1-0-3-1 name=ampl_app_U +2013-08-27 01:13:52,034+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1-0-5-1 name=ampl_app_U +2013-08-27 01:13:52,034+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-4-1 name=ampl_app_U +2013-08-27 01:13:52,034+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1-0-3-0 name=ampl_app +2013-08-27 01:13:52,034+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1-0-5-0 name=ampl_app +2013-08-27 01:13:52,034+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-4-0 name=ampl_app +2013-08-27 01:13:52,035+0000 DEBUG swift PROCEDURE line=3 thread=R-42-0-1x2-20-0 name=ampl_app +2013-08-27 01:13:52,035+0000 INFO GlobalSubmitQueue No global submit throttle set. Using default (1024) +2013-08-27 01:13:52,036+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-16-1 name=ampl_app_U +2013-08-27 01:13:52,036+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-9-1 name=ampl_app_U +2013-08-27 01:13:52,036+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-14-1 name=ampl_app_U +2013-08-27 01:13:52,036+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-13-1 name=ampl_app_U +2013-08-27 01:13:52,036+0000 DEBUG swift PROCEDURE line=29 thread=R-42-0-1x2-12-1 name=ampl_app_U +2013-08-27 01:13:52,037+0000 INFO LateBindingScheduler jobs queued: 6 +2013-08-27 01:13:52,039+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:13:52,039+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-6cztedel thread=R-42-0-1x2-3-0 host=midway replicationGroup=null +2013-08-27 01:13:52,039+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-7cztedel thread=R-42-0-1x2-0x2 host=midway replicationGroup=null +2013-08-27 01:13:52,039+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-bcztedel thread=R-42-0-1x2-8-0 host=midway replicationGroup=null +2013-08-27 01:13:52,039+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-9cztedel thread=R-42-0-1x2-7-0 host=midway replicationGroup=null +2013-08-27 01:13:52,039+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-ccztedel thread=R-42-0-1x2-10-0 host=midway replicationGroup=null +2013-08-27 01:13:52,039+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-fcztedel thread=R-42-0-1-0-9-0 host=midway replicationGroup=null +2013-08-27 01:13:52,039+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-ecztedel thread=R-42-0-1x2-12-0 host=midway replicationGroup=null +2013-08-27 01:13:52,039+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-gcztedel thread=R-42-0x2 host=midway replicationGroup=null +2013-08-27 01:13:52,039+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-5cztedel thread=R-42-0-1x3-0 host=midway replicationGroup=null +2013-08-27 01:13:52,039+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-acztedel thread=R-42-0-1-0x3 host=midway replicationGroup=null +2013-08-27 01:13:52,039+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-dcztedel thread=R-42-0-1-0-10-0 host=midway replicationGroup=null +2013-08-27 01:13:52,040+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-8cztedel thread=R-42-0-1x2-2-0 host=midway replicationGroup=null +2013-08-27 01:13:52,040+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-hcztedel thread=R-42-0-1x2-13-0 host=midway replicationGroup=null +2013-08-27 01:13:52,040+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-icztedel thread=R-42-0-1x2-14-0 host=midway replicationGroup=null +2013-08-27 01:13:52,040+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-jcztedel thread=R-42-0-1x2-9-0 host=midway replicationGroup=null +2013-08-27 01:13:52,040+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-kcztedel thread=R-42-0-1-0-2-0 host=midway replicationGroup=null +2013-08-27 01:13:52,040+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-lcztedel thread=R-42-0-1x2-16-0 host=midway replicationGroup=null +2013-08-27 01:13:52,040+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-ncztedel thread=R-42-0-1-0-4-0 host=midway replicationGroup=null +2013-08-27 01:13:52,040+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-ocztedel thread=R-42-0-1x2-11-0 host=midway replicationGroup=null +2013-08-27 01:13:52,040+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-pcztedel thread=R-42-0-1x2-18-0 host=midway replicationGroup=null +2013-08-27 01:13:52,040+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-rcztedel thread=R-42-0-1-0-8-0 host=midway replicationGroup=null +2013-08-27 01:13:52,040+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-qcztedel thread=R-42-0-1-0-1-0 host=midway replicationGroup=null +2013-08-27 01:13:52,040+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-scztedel thread=R-42-0-1-0-3-0 host=midway replicationGroup=null +2013-08-27 01:13:52,040+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-mcztedel thread=R-42-0-1x2-15-0 host=midway replicationGroup=null +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-gcztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat10000.out, outdir/xhat20000.out, obj_outdir/obj_ampl0000.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res0000.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/g/runampl-gcztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-dcztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0010.out, outdir/xhat_l20000_0000.0010.out, obj_outdir/obj_out_l0000_0000.0010.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0010.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/d/runampl-dcztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-ccztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0010.out, outdir/xhat_l20000_0001.0010.out, obj_outdir/obj_out_l0000_0001.0010.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0010.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/c/runampl-ccztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-8cztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0002.out, outdir/xhat_l20000_0001.0002.out, obj_outdir/obj_out_l0000_0001.0002.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0002.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/8/runampl-8cztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-9cztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0007.out, outdir/xhat_l20000_0001.0007.out, obj_outdir/obj_out_l0000_0001.0007.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0007.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/9/runampl-9cztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-hcztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0013.out, outdir/xhat_l20000_0001.0013.out, obj_outdir/obj_out_l0000_0001.0013.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0013.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/h/runampl-hcztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-kcztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0002.out, outdir/xhat_l20000_0000.0002.out, obj_outdir/obj_out_l0000_0000.0002.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0002.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/k/runampl-kcztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-mcztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0015.out, outdir/xhat_l20000_0001.0015.out, obj_outdir/obj_out_l0000_0001.0015.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0015.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/m/runampl-mcztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-lcztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0016.out, outdir/xhat_l20000_0001.0016.out, obj_outdir/obj_out_l0000_0001.0016.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0016.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/l/runampl-lcztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-7cztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0000.out, outdir/xhat_l20000_0001.0000.out, obj_outdir/obj_out_l0000_0001.0000.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0000.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/7/runampl-7cztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-6cztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0003.out, outdir/xhat_l20000_0001.0003.out, obj_outdir/obj_out_l0000_0001.0003.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0003.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/6/runampl-6cztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-fcztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0009.out, outdir/xhat_l20000_0000.0009.out, obj_outdir/obj_out_l0000_0000.0009.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0009.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/f/runampl-fcztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-acztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0000.out, outdir/xhat_l20000_0000.0000.out, obj_outdir/obj_out_l0000_0000.0000.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0000.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/a/runampl-acztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-scztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0003.out, outdir/xhat_l20000_0000.0003.out, obj_outdir/obj_out_l0000_0000.0003.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0003.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/s/runampl-scztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-ncztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0004.out, outdir/xhat_l20000_0000.0004.out, obj_outdir/obj_out_l0000_0000.0004.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0004.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/n/runampl-ncztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-jcztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0009.out, outdir/xhat_l20000_0001.0009.out, obj_outdir/obj_out_l0000_0001.0009.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0009.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/j/runampl-jcztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-qcztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0001.out, outdir/xhat_l20000_0000.0001.out, obj_outdir/obj_out_l0000_0000.0001.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0001.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/q/runampl-qcztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-rcztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0008.out, outdir/xhat_l20000_0000.0008.out, obj_outdir/obj_out_l0000_0000.0008.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0008.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/r/runampl-rcztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-5cztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0001.out, outdir/xhat_l20000_0001.0001.out, obj_outdir/obj_out_l0000_0001.0001.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0001.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/5/runampl-5cztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-ecztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0012.out, outdir/xhat_l20000_0001.0012.out, obj_outdir/obj_out_l0000_0001.0012.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0012.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/e/runampl-ecztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-bcztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0008.out, outdir/xhat_l20000_0001.0008.out, obj_outdir/obj_out_l0000_0001.0008.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0008.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/b/runampl-bcztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-ocztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0011.out, outdir/xhat_l20000_0001.0011.out, obj_outdir/obj_out_l0000_0001.0011.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0011.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/o/runampl-ocztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-icztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0014.out, outdir/xhat_l20000_0001.0014.out, obj_outdir/obj_out_l0000_0001.0014.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0014.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/i/runampl-icztedel host=midway +2013-08-27 01:13:52,041+0000 DEBUG swift JOB_START jobid=runampl-pcztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0018.out, outdir/xhat_l20000_0001.0018.out, obj_outdir/obj_out_l0000_0001.0018.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0018.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/p/runampl-pcztedel host=midway +2013-08-27 01:13:52,056+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-tcztedel thread=R-42-0-1x2-17-0 host=midway replicationGroup=null +2013-08-27 01:13:52,056+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-xcztedel thread=R-42-0-1x2-6-0 host=midway replicationGroup=null +2013-08-27 01:13:52,056+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-ycztedel thread=R-42-0-1x2-4-0 host=midway replicationGroup=null +2013-08-27 01:13:52,056+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-1dztedel thread=R-42-0-1x2-19-0 host=midway replicationGroup=null +2013-08-27 01:13:52,056+0000 DEBUG swift JOB_START jobid=runampl-tcztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0017.out, outdir/xhat_l20000_0001.0017.out, obj_outdir/obj_out_l0000_0001.0017.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0017.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/t/runampl-tcztedel host=midway +2013-08-27 01:13:52,056+0000 DEBUG swift JOB_START jobid=runampl-xcztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0006.out, outdir/xhat_l20000_0001.0006.out, obj_outdir/obj_out_l0000_0001.0006.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0006.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/x/runampl-xcztedel host=midway +2013-08-27 01:13:52,056+0000 DEBUG swift JOB_START jobid=runampl-ycztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0004.out, outdir/xhat_l20000_0001.0004.out, obj_outdir/obj_out_l0000_0001.0004.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0004.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/y/runampl-ycztedel host=midway +2013-08-27 01:13:52,056+0000 DEBUG swift JOB_START jobid=runampl-1dztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0019.out, outdir/xhat_l20000_0001.0019.out, obj_outdir/obj_out_l0000_0001.0019.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0019.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/1/runampl-1dztedel host=midway +2013-08-27 01:13:52,056+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-ucztedel thread=R-42-0-1-0-7-0 host=midway replicationGroup=null +2013-08-27 01:13:52,056+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-vcztedel thread=R-42-0-1-0-5-0 host=midway replicationGroup=null +2013-08-27 01:13:52,056+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-zcztedel thread=R-42-0-1x2-5-0 host=midway replicationGroup=null +2013-08-27 01:13:52,056+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-0dztedel thread=R-42-0-1-0-6-0 host=midway replicationGroup=null +2013-08-27 01:13:52,057+0000 DEBUG swift JOB_START jobid=runampl-ucztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0007.out, outdir/xhat_l20000_0000.0007.out, obj_outdir/obj_out_l0000_0000.0007.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0007.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/u/runampl-ucztedel host=midway +2013-08-27 01:13:52,057+0000 DEBUG swift JOB_START jobid=runampl-vcztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0005.out, outdir/xhat_l20000_0000.0005.out, obj_outdir/obj_out_l0000_0000.0005.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0005.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/v/runampl-vcztedel host=midway +2013-08-27 01:13:52,057+0000 DEBUG swift JOB_START jobid=runampl-0dztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0006.out, outdir/xhat_l20000_0000.0006.out, obj_outdir/obj_out_l0000_0000.0006.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0006.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/0/runampl-0dztedel host=midway +2013-08-27 01:13:52,057+0000 DEBUG swift JOB_START jobid=runampl-zcztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0005.out, outdir/xhat_l20000_0001.0005.out, obj_outdir/obj_out_l0000_0001.0005.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0005.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/z/runampl-zcztedel host=midway +2013-08-27 01:13:52,089+0000 INFO LocalService Started local service: 128.135.112.73:50000 +2013-08-27 01:13:52,094+0000 INFO BootstrapService Socket bound. URL is http://swift.rcc.uchicago.edu:50001 +2013-08-27 01:13:52,124+0000 INFO Settings Local contacts: [http://128.135.112.73:50003, http://172.25.181.1:50003, http://10.50.181.1:50003] +2013-08-27 01:13:52,126+0000 INFO CoasterService Started local service: http://128.135.112.73:50003 +2013-08-27 01:13:52,126+0000 INFO CoasterService Reserving channel for registration +2013-08-27 01:13:52,141+0000 INFO MetaChannel MetaChannel [context: cpipe, boundTo: null] binding to cpipe://1 +2013-08-27 01:13:52,142+0000 INFO MetaChannel MetaChannel [context: spipe, boundTo: null] binding to spipe://1 +2013-08-27 01:13:52,142+0000 INFO CoasterService Sending registration +2013-08-27 01:13:52,145+0000 INFO MetaChannel Trying to re-bind current channel +2013-08-27 01:13:52,146+0000 INFO RequestHandler Handler(tag: 1, REGISTER) unregistering (send) +2013-08-27 01:13:52,146+0000 INFO CoasterService Registration complete +2013-08-27 01:13:52,146+0000 INFO CoasterService Started coaster service: http://128.135.112.73:50002 +2013-08-27 01:13:52,148+0000 INFO RequestHandler Handler(tag: 1, CONFIGSERVICE) unregistering (send) +2013-08-27 01:13:52,160+0000 INFO BlockQueueProcessor Starting... id=0827-1301520 +2013-08-27 01:13:52,163+0000 INFO RequestHandler Handler(tag: 3, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,164+0000 INFO RequestHandler Handler(tag: 2, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,165+0000 INFO RequestHandler Handler(tag: 4, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,166+0000 INFO RequestHandler Handler(tag: 5, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,167+0000 INFO RequestHandler Handler(tag: 6, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,167+0000 INFO BlockQueueProcessor +Settings { + slots = 2 + jobsPerNode = 16 + workersPerNode = 16 + nodeGranularity = 1 + allocationStepSize = 0.1 + maxNodes = 1 + lowOverallocation = 100.0 + highOverallocation = 100.0 + overallocationDecayFactor = 0.001 + spread = 0.9 + reserve = 60.000s + maxtime = 7500 + remoteMonitorEnabled = false + internalHostname = 10.50.181.1 + hookClass = null + workerManager = block + workerLoggingLevel = NONE + workerLoggingDirectory = DEFAULT + ldLibraryPath = null + workerCopies = null + directory = null + useHashBang = null + parallelism = 0.01 + coresPerNode = 1 + attributes = {queue=sandyb} +} + +2013-08-27 01:13:52,167+0000 INFO BlockQueueProcessor Jobs in holding queue: 2 +2013-08-27 01:13:52,167+0000 INFO BlockQueueProcessor Time estimate for holding queue (seconds): 2 +2013-08-27 01:13:52,168+0000 INFO BlockQueueProcessor Allocating blocks for a total walltime of: 2s +2013-08-27 01:13:52,168+0000 INFO BlockQueueProcessor Considering: Job(id:1 7200.000s) +2013-08-27 01:13:52,168+0000 INFO BlockQueueProcessor Max Walltime (seconds): 7200 +2013-08-27 01:13:52,168+0000 INFO RequestHandler Handler(tag: 7, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,168+0000 INFO BlockQueueProcessor Time estimate (seconds): 7440 +2013-08-27 01:13:52,168+0000 INFO BlockQueueProcessor Total for this new Block (est. seconds): 1 +2013-08-27 01:13:52,168+0000 INFO RequestHandler Handler(tag: 8, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,169+0000 INFO RequestHandler Handler(tag: 9, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,170+0000 INFO RequestHandler Handler(tag: 11, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,170+0000 INFO BlockQueueProcessor index: 1, last: 0, holding.size(): 2 +2013-08-27 01:13:52,170+0000 INFO BlockQueueProcessor Queued: 2 jobs to new Block +2013-08-27 01:13:52,170+0000 INFO BlockQueueProcessor index: 1, last: 0, ii: 2, holding.size(): 2 +2013-08-27 01:13:52,170+0000 INFO Block Starting block: workers=16, walltime=7440.000s +2013-08-27 01:13:52,171+0000 INFO RequestHandler Handler(tag: 10, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,172+0000 INFO RequestHandler Handler(tag: 12, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,172+0000 INFO RemoteLogHandler BLOCK_REQUESTED id=0827-1301520-000000, cores=16, coresPerWorker=1, walltime=7440 +2013-08-27 01:13:52,172+0000 INFO RequestHandler Handler(tag: 2, RLOG) unregistering (send) +2013-08-27 01:13:52,172+0000 INFO RequestHandler Handler(tag: 13, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,173+0000 INFO BlockTaskSubmitter Queuing block Block 0827-1301520-000000 (16x7440.000s) for submission +2013-08-27 01:13:52,173+0000 INFO BlockQueueProcessor Added 2 jobs to new blocks +2013-08-27 01:13:52,173+0000 INFO BlockTaskSubmitter Submitting block Block 0827-1301520-000000 (16x7440.000s) +2013-08-27 01:13:52,173+0000 INFO BlockQueueProcessor Committed 10 new jobs +2013-08-27 01:13:52,173+0000 INFO ExecutionTaskHandler provider=slurm +2013-08-27 01:13:52,173+0000 INFO RequestHandler Handler(tag: 14, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,174+0000 INFO RequestHandler Handler(tag: 15, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,175+0000 INFO RequestHandler Handler(tag: 17, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,176+0000 INFO RequestHandler Handler(tag: 16, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,176+0000 INFO Block Block task status changed: Submitting +2013-08-27 01:13:52,177+0000 INFO RequestHandler Handler(tag: 18, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,177+0000 INFO RequestHandler Handler(tag: 19, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,178+0000 INFO RequestHandler Handler(tag: 20, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,179+0000 INFO RequestHandler Handler(tag: 21, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,180+0000 INFO RequestHandler Handler(tag: 22, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,180+0000 INFO RequestHandler Handler(tag: 23, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,181+0000 INFO RequestHandler Handler(tag: 24, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,182+0000 INFO RequestHandler Handler(tag: 25, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,182+0000 INFO RequestHandler Handler(tag: 26, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,183+0000 INFO RequestHandler Handler(tag: 27, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,183+0000 INFO RequestHandler Handler(tag: 28, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,184+0000 INFO RequestHandler Handler(tag: 29, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,184+0000 INFO RequestHandler Handler(tag: 30, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,185+0000 INFO RequestHandler Handler(tag: 31, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,185+0000 INFO RequestHandler Handler(tag: 32, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,185+0000 INFO RequestHandler Handler(tag: 33, SUBMITJOB) unregistering (send) +2013-08-27 01:13:52,191+0000 DEBUG AbstractExecutor Writing Slurm script to /home/maheshwari/.globus/scripts/Slurm3927061060097759195.submit +2013-08-27 01:13:52,192+0000 DEBUG AbstractExecutor Wrote Slurm script to /home/maheshwari/.globus/scripts/Slurm3927061060097759195.submit +2013-08-27 01:13:52,192+0000 DEBUG AbstractExecutor Command line: sbatch /home/maheshwari/.globus/scripts/Slurm3927061060097759195.submit +2013-08-27 01:13:52,208+0000 DEBUG AbstractExecutor sbatch done (exit code 0) +2013-08-27 01:13:52,208+0000 DEBUG AbstractExecutor Waiting for output from sbatch +2013-08-27 01:13:52,208+0000 DEBUG AbstractExecutor Output from sbatch is: "Submitted batch job 5212616" +2013-08-27 01:13:52,208+0000 DEBUG AbstractExecutor Submitted job with id '5212616' +2013-08-27 01:13:52,209+0000 INFO Block Block task status changed: Submitted +2013-08-27 01:13:52,459+0000 INFO AbstractQueuePoller Actively monitored: 0, New: 1, Done: 0 +2013-08-27 01:13:53,006+0000 INFO RuntimeStats$ProgressTicker Selecting site:1 Submitted:32 +2013-08-27 01:13:53,333+0000 INFO BlockQueueProcessor Jobs in holding queue: 16 +2013-08-27 01:13:53,333+0000 INFO BlockQueueProcessor Time estimate for holding queue (seconds): 18 +2013-08-27 01:13:53,333+0000 INFO BlockQueueProcessor Allocating blocks for a total walltime of: 18s +2013-08-27 01:13:53,333+0000 INFO BlockQueueProcessor Considering: Job(id:31 7200.000s) +2013-08-27 01:13:53,333+0000 INFO BlockQueueProcessor Max Walltime (seconds): 7200 +2013-08-27 01:13:53,333+0000 INFO BlockQueueProcessor Time estimate (seconds): 7440 +2013-08-27 01:13:53,333+0000 INFO BlockQueueProcessor Total for this new Block (est. seconds): 15 +2013-08-27 01:13:53,333+0000 INFO BlockQueueProcessor index: 15, last: 0, holding.size(): 16 +2013-08-27 01:13:53,334+0000 INFO BlockQueueProcessor Queued: 16 jobs to new Block +2013-08-27 01:13:53,334+0000 INFO BlockQueueProcessor index: 15, last: 0, ii: 16, holding.size(): 16 +2013-08-27 01:13:53,334+0000 INFO Block Starting block: workers=16, walltime=7440.000s +2013-08-27 01:13:53,334+0000 INFO RemoteLogHandler BLOCK_REQUESTED id=0827-1301520-000001, cores=16, coresPerWorker=1, walltime=7440 +2013-08-27 01:13:53,334+0000 INFO BlockTaskSubmitter Queuing block Block 0827-1301520-000001 (16x7440.000s) for submission +2013-08-27 01:13:53,334+0000 INFO RequestHandler Handler(tag: 3, RLOG) unregistering (send) +2013-08-27 01:13:53,334+0000 INFO BlockQueueProcessor Added 16 jobs to new blocks +2013-08-27 01:13:53,334+0000 INFO BlockTaskSubmitter Submitting block Block 0827-1301520-000001 (16x7440.000s) +2013-08-27 01:13:53,334+0000 INFO ExecutionTaskHandler provider=slurm +2013-08-27 01:13:53,334+0000 INFO Block Block task status changed: Submitting +2013-08-27 01:13:53,345+0000 DEBUG AbstractExecutor Writing Slurm script to /home/maheshwari/.globus/scripts/Slurm3983017732998933676.submit +2013-08-27 01:13:53,345+0000 DEBUG AbstractExecutor Wrote Slurm script to /home/maheshwari/.globus/scripts/Slurm3983017732998933676.submit +2013-08-27 01:13:53,345+0000 DEBUG AbstractExecutor Command line: sbatch /home/maheshwari/.globus/scripts/Slurm3983017732998933676.submit +2013-08-27 01:13:53,357+0000 DEBUG AbstractExecutor sbatch done (exit code 0) +2013-08-27 01:13:53,357+0000 DEBUG AbstractExecutor Waiting for output from sbatch +2013-08-27 01:13:53,357+0000 DEBUG AbstractExecutor Output from sbatch is: "Submitted batch job 5212617" +2013-08-27 01:13:53,357+0000 DEBUG AbstractExecutor Submitted job with id '5212617' +2013-08-27 01:13:53,357+0000 INFO Block Block task status changed: Submitted +2013-08-27 01:13:54,007+0000 INFO RuntimeStats$ProgressTicker Selecting site:1 Submitted:32 +2013-08-27 01:13:55,007+0000 INFO RuntimeStats$ProgressTicker Selecting site:1 Submitted:32 +2013-08-27 01:13:56,007+0000 INFO RuntimeStats$ProgressTicker Selecting site:1 Submitted:32 +2013-08-27 01:13:57,007+0000 INFO RuntimeStats$ProgressTicker Selecting site:1 Submitted:32 +2013-08-27 01:13:57,472+0000 INFO AbstractQueuePoller Actively monitored: 1, New: 1, Done: 0 +2013-08-27 01:13:58,008+0000 INFO RuntimeStats$ProgressTicker Selecting site:1 Submitted:32 +2013-08-27 01:13:59,008+0000 INFO RuntimeStats$ProgressTicker Selecting site:1 Submitted:32 +2013-08-27 01:13:59,349+0000 INFO AbstractCoasterChannel Timeout check started for TCPChannel [type: server, contact: unknown] +2013-08-27 01:13:59,353+0000 INFO AbstractTCPChannel Channel started: TCPChannel [type: server, contact: 10.50.182.128:49546] +2013-08-27 01:13:59,354+0000 INFO LocalTCPService Received registration: blockid = 0827-1301520-000001, url = midway384 +2013-08-27 01:13:59,354+0000 INFO MetaChannel MetaChannel [context: worker-1, boundTo: null] binding to TCPChannel [type: server, contact: 10.50.182.128:49546] +2013-08-27 01:13:59,355+0000 INFO RemoteLogHandler WORKER_ACTIVE blockid=0827-1301520-000001 +2013-08-27 01:13:59,356+0000 INFO RequestHandler Handler(tag: 4, RLOG) unregistering (send) +2013-08-27 01:13:59,357+0000 DEBUG Cpu worker started: block=0827-1301520-000001 host=midway384 id=0 +2013-08-27 01:13:59,357+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=0 +2013-08-27 01:13:59,358+0000 INFO Block Started CPU 0:1377566039s +2013-08-27 01:13:59,358+0000 DEBUG Cpu worker started: block=0827-1301520-000001 host=midway384 id=1 +2013-08-27 01:13:59,358+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=1 +2013-08-27 01:13:59,358+0000 INFO Block Started CPU 1:1377566039s +2013-08-27 01:13:59,358+0000 DEBUG Cpu worker started: block=0827-1301520-000001 host=midway384 id=2 +2013-08-27 01:13:59,358+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=0 Cpus sleeping: 1 +2013-08-27 01:13:59,358+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=2 +2013-08-27 01:13:59,358+0000 INFO Block Started CPU 2:1377566039s +2013-08-27 01:13:59,358+0000 DEBUG Cpu worker started: block=0827-1301520-000001 host=midway384 id=3 +2013-08-27 01:13:59,358+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=3 +2013-08-27 01:13:59,358+0000 INFO Block Started CPU 3:1377566039s +2013-08-27 01:13:59,358+0000 DEBUG Cpu worker started: block=0827-1301520-000001 host=midway384 id=4 +2013-08-27 01:13:59,358+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=4 +2013-08-27 01:13:59,358+0000 INFO Block Started CPU 4:1377566039s +2013-08-27 01:13:59,358+0000 DEBUG Cpu worker started: block=0827-1301520-000001 host=midway384 id=5 +2013-08-27 01:13:59,358+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=5 +2013-08-27 01:13:59,358+0000 INFO Block Started CPU 5:1377566039s +2013-08-27 01:13:59,358+0000 DEBUG Cpu worker started: block=0827-1301520-000001 host=midway384 id=6 +2013-08-27 01:13:59,358+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=6 +2013-08-27 01:13:59,358+0000 INFO Block Started CPU 6:1377566039s +2013-08-27 01:13:59,358+0000 DEBUG Cpu worker started: block=0827-1301520-000001 host=midway384 id=7 +2013-08-27 01:13:59,358+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=7 +2013-08-27 01:13:59,358+0000 INFO Block Started CPU 7:1377566039s +2013-08-27 01:13:59,358+0000 DEBUG Cpu worker started: block=0827-1301520-000001 host=midway384 id=8 +2013-08-27 01:13:59,358+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=8 +2013-08-27 01:13:59,358+0000 INFO Block Started CPU 8:1377566039s +2013-08-27 01:13:59,358+0000 DEBUG Cpu worker started: block=0827-1301520-000001 host=midway384 id=9 +2013-08-27 01:13:59,358+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=9 +2013-08-27 01:13:59,358+0000 INFO Block Started CPU 9:1377566039s +2013-08-27 01:13:59,358+0000 DEBUG Cpu worker started: block=0827-1301520-000001 host=midway384 id=10 +2013-08-27 01:13:59,358+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=10 +2013-08-27 01:13:59,358+0000 INFO Block Started CPU 10:1377566039s +2013-08-27 01:13:59,358+0000 DEBUG Cpu worker started: block=0827-1301520-000001 host=midway384 id=11 +2013-08-27 01:13:59,358+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=11 +2013-08-27 01:13:59,358+0000 INFO Block Started CPU 11:1377566039s +2013-08-27 01:13:59,358+0000 DEBUG Cpu worker started: block=0827-1301520-000001 host=midway384 id=12 +2013-08-27 01:13:59,358+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=12 +2013-08-27 01:13:59,358+0000 INFO Block Started CPU 12:1377566039s +2013-08-27 01:13:59,358+0000 DEBUG Cpu worker started: block=0827-1301520-000001 host=midway384 id=13 +2013-08-27 01:13:59,359+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=13 +2013-08-27 01:13:59,359+0000 INFO Block Started CPU 13:1377566039s +2013-08-27 01:13:59,359+0000 DEBUG Cpu worker started: block=0827-1301520-000001 host=midway384 id=14 +2013-08-27 01:13:59,359+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=14 +2013-08-27 01:13:59,359+0000 INFO Block Started CPU 14:1377566039s +2013-08-27 01:13:59,359+0000 DEBUG Cpu worker started: block=0827-1301520-000001 host=midway384 id=15 +2013-08-27 01:13:59,359+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=15 +2013-08-27 01:13:59,359+0000 INFO Block Started CPU 15:1377566039s +2013-08-27 01:13:59,359+0000 INFO Block Started worker 0827-1301520-000001:000000 +2013-08-27 01:13:59,359+0000 INFO AbstractStreamCoasterChannel Using NIO sender for TCPChannel [type: server, contact: 0827-1301520-000001-000000] +2013-08-27 01:13:59,359+0000 INFO Cpu 0827-1301520-000001:0 (quality: 1.0) submitting urn:1377566031931-1377566031969-1377566031970: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0009.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0009.out|outdir/xhat_l10000_000 0.0009.out|outdir/xhat_l20000_0000.0009.out|Results/ampl_res_l0000_0000.0009.out|outdir/out_l0000_0000.0009.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0009.out outdir/xhat_l20000_0000.0009.out obj_outdir/obj_out_l0000_0000.0009.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0009.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,360+0000 INFO RequestHandler Handler(tag: 5, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,361+0000 INFO RequestHandler Handler(tag: 2537, REGISTER) unregistering (send) +2013-08-27 01:13:59,361+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=1 Cpus sleeping: 1 +2013-08-27 01:13:59,361+0000 INFO Cpu 0827-1301520-000001:1 (quality: 1.0) submitting urn:1377566031946-1377566031972-1377566031973: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0013.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0013.out|outdir/xhat_l10000_000 1.0013.out|outdir/xhat_l20000_0001.0013.out|Results/ampl_res_l0000_0001.0013.out|outdir/out_l0000_0001.0013.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0013.out outdir/xhat_l20000_0001.0013.out obj_outdir/obj_out_l0000_0001.0013.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0013.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,361+0000 INFO RequestHandler Handler(tag: 6, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,362+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=2 Cpus sleeping: 1 +2013-08-27 01:13:59,362+0000 INFO Cpu 0827-1301520-000001:2 (quality: 1.0) submitting urn:1377566031939-1377566031975-1377566031976: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0009.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0009.out|outdir/xhat_l10000_000 1.0009.out|outdir/xhat_l20000_0001.0009.out|Results/ampl_res_l0000_0001.0009.out|outdir/out_l0000_0001.0009.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0009.out outdir/xhat_l20000_0001.0009.out obj_outdir/obj_out_l0000_0001.0009.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0009.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,362+0000 INFO RequestHandler Handler(tag: 7, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,362+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=3 Cpus sleeping: 1 +2013-08-27 01:13:59,362+0000 INFO Cpu 0827-1301520-000001:3 (quality: 1.0) submitting urn:1377566031947-1377566031978-1377566031979: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0000.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0000.out|outdir/xhat_l10000_000 0.0000.out|outdir/xhat_l20000_0000.0000.out|Results/ampl_res_l0000_0000.0000.out|outdir/out_l0000_0000.0000.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0000.out outdir/xhat_l20000_0000.0000.out obj_outdir/obj_out_l0000_0000.0000.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0000.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,362+0000 INFO RequestHandler Handler(tag: 8, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,363+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=4 Cpus sleeping: 1 +2013-08-27 01:13:59,363+0000 INFO Cpu 0827-1301520-000001:4 (quality: 1.0) submitting urn:1377566031937-1377566031981-1377566031982: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0002.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0002.out|outdir/xhat_l10000_000 1.0002.out|outdir/xhat_l20000_0001.0002.out|Results/ampl_res_l0000_0001.0002.out|outdir/out_l0000_0001.0002.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0002.out outdir/xhat_l20000_0001.0002.out obj_outdir/obj_out_l0000_0001.0002.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0002.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,363+0000 INFO RequestHandler Handler(tag: 9, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,363+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=5 Cpus sleeping: 1 +2013-08-27 01:13:59,363+0000 INFO Cpu 0827-1301520-000001:5 (quality: 1.0) submitting urn:1377566031944-1377566031984-1377566031985: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0003.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0003.out|outdir/xhat_l10000_000 1.0003.out|outdir/xhat_l20000_0001.0003.out|Results/ampl_res_l0000_0001.0003.out|outdir/out_l0000_0001.0003.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0003.out outdir/xhat_l20000_0001.0003.out obj_outdir/obj_out_l0000_0001.0003.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0003.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,363+0000 INFO RequestHandler Handler(tag: 10, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,363+0000 INFO TCPBufferManager Adjusting buffer size to 8650752 for 2 sockets +2013-08-27 01:13:59,363+0000 INFO AbstractCoasterChannel Timeout check started for TCPChannel [type: server, contact: unknown] +2013-08-27 01:13:59,363+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=6 Cpus sleeping: 1 +2013-08-27 01:13:59,363+0000 INFO AbstractTCPChannel Channel started: TCPChannel [type: server, contact: 10.50.181.33:37280] +2013-08-27 01:13:59,363+0000 INFO Cpu 0827-1301520-000001:6 (quality: 1.0) submitting urn:1377566031938-1377566031987-1377566031988: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0011.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0011.out|outdir/xhat_l10000_000 1.0011.out|outdir/xhat_l20000_0001.0011.out|Results/ampl_res_l0000_0001.0011.out|outdir/out_l0000_0001.0011.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0011.out outdir/xhat_l20000_0001.0011.out obj_outdir/obj_out_l0000_0001.0011.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0011.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,364+0000 INFO RequestHandler Handler(tag: 11, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,364+0000 INFO LocalTCPService Received registration: blockid = 0827-1301520-000000, url = midway033 +2013-08-27 01:13:59,364+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=7 Cpus sleeping: 1 +2013-08-27 01:13:59,364+0000 INFO MetaChannel MetaChannel [context: worker-2, boundTo: null] binding to TCPChannel [type: server, contact: 10.50.181.33:37280] +2013-08-27 01:13:59,364+0000 INFO Cpu 0827-1301520-000001:7 (quality: 1.0) submitting urn:1377566031945-1377566031990-1377566031991: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0007.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0007.out|outdir/xhat_l10000_000 1.0007.out|outdir/xhat_l20000_0001.0007.out|Results/ampl_res_l0000_0001.0007.out|outdir/out_l0000_0001.0007.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0007.out outdir/xhat_l20000_0001.0007.out obj_outdir/obj_out_l0000_0001.0007.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0007.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,364+0000 DEBUG Cpu worker started: block=0827-1301520-000000 host=midway033 id=0 +2013-08-27 01:13:59,364+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=0 +2013-08-27 01:13:59,364+0000 INFO Block Started CPU 0:1377566039s +2013-08-27 01:13:59,364+0000 INFO RemoteLogHandler WORKER_ACTIVE blockid=0827-1301520-000000 +2013-08-27 01:13:59,364+0000 DEBUG Cpu worker started: block=0827-1301520-000000 host=midway033 id=1 +2013-08-27 01:13:59,364+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=1 +2013-08-27 01:13:59,364+0000 INFO RequestHandler Handler(tag: 12, RLOG) unregistering (send) +2013-08-27 01:13:59,364+0000 INFO Block Started CPU 1:1377566039s +2013-08-27 01:13:59,364+0000 DEBUG Cpu worker started: block=0827-1301520-000000 host=midway033 id=2 +2013-08-27 01:13:59,364+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=2 +2013-08-27 01:13:59,364+0000 INFO Block Started CPU 2:1377566039s +2013-08-27 01:13:59,364+0000 DEBUG Cpu worker started: block=0827-1301520-000000 host=midway033 id=3 +2013-08-27 01:13:59,364+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=3 +2013-08-27 01:13:59,365+0000 INFO Block Started CPU 3:1377566039s +2013-08-27 01:13:59,365+0000 INFO RequestHandler Handler(tag: 13, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,365+0000 DEBUG Cpu worker started: block=0827-1301520-000000 host=midway033 id=4 +2013-08-27 01:13:59,365+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=4 +2013-08-27 01:13:59,365+0000 INFO Block Started CPU 4:1377566039s +2013-08-27 01:13:59,365+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=8 Cpus sleeping: 1 +2013-08-27 01:13:59,365+0000 DEBUG Cpu worker started: block=0827-1301520-000000 host=midway033 id=5 +2013-08-27 01:13:59,365+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=5 +2013-08-27 01:13:59,365+0000 INFO Block Started CPU 5:1377566039s +2013-08-27 01:13:59,365+0000 DEBUG Cpu worker started: block=0827-1301520-000000 host=midway033 id=6 +2013-08-27 01:13:59,365+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=6 +2013-08-27 01:13:59,365+0000 INFO Cpu 0827-1301520-000001:8 (quality: 1.0) submitting urn:1377566031935-1377566031993-1377566031994: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0008.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0008.out|outdir/xhat_l10000_000 0.0008.out|outdir/xhat_l20000_0000.0008.out|Results/ampl_res_l0000_0000.0008.out|outdir/out_l0000_0000.0008.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0008.out outdir/xhat_l20000_0000.0008.out obj_outdir/obj_out_l0000_0000.0008.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0008.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,365+0000 INFO Block Started CPU 6:1377566039s +2013-08-27 01:13:59,365+0000 DEBUG Cpu worker started: block=0827-1301520-000000 host=midway033 id=7 +2013-08-27 01:13:59,365+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=7 +2013-08-27 01:13:59,365+0000 INFO Block Started CPU 7:1377566039s +2013-08-27 01:13:59,365+0000 DEBUG Cpu worker started: block=0827-1301520-000000 host=midway033 id=8 +2013-08-27 01:13:59,365+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=8 +2013-08-27 01:13:59,365+0000 INFO Block Started CPU 8:1377566039s +2013-08-27 01:13:59,365+0000 DEBUG Cpu worker started: block=0827-1301520-000000 host=midway033 id=9 +2013-08-27 01:13:59,365+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=9 +2013-08-27 01:13:59,365+0000 INFO Block Started CPU 9:1377566039s +2013-08-27 01:13:59,365+0000 DEBUG Cpu worker started: block=0827-1301520-000000 host=midway033 id=10 +2013-08-27 01:13:59,365+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=10 +2013-08-27 01:13:59,365+0000 INFO RequestHandler Handler(tag: 14, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,365+0000 INFO Block Started CPU 10:1377566039s +2013-08-27 01:13:59,365+0000 DEBUG Cpu worker started: block=0827-1301520-000000 host=midway033 id=11 +2013-08-27 01:13:59,365+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=11 +2013-08-27 01:13:59,365+0000 INFO Block Started CPU 11:1377566039s +2013-08-27 01:13:59,365+0000 DEBUG Cpu worker started: block=0827-1301520-000000 host=midway033 id=12 +2013-08-27 01:13:59,365+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=12 +2013-08-27 01:13:59,365+0000 INFO Block Started CPU 12:1377566039s +2013-08-27 01:13:59,365+0000 DEBUG Cpu worker started: block=0827-1301520-000000 host=midway033 id=13 +2013-08-27 01:13:59,365+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=13 +2013-08-27 01:13:59,365+0000 INFO Block Started CPU 13:1377566039s +2013-08-27 01:13:59,365+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=9 Cpus sleeping: 1 +2013-08-27 01:13:59,365+0000 DEBUG Cpu worker started: block=0827-1301520-000000 host=midway033 id=14 +2013-08-27 01:13:59,365+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=14 +2013-08-27 01:13:59,365+0000 INFO Block Started CPU 14:1377566039s +2013-08-27 01:13:59,365+0000 DEBUG Cpu worker started: block=0827-1301520-000000 host=midway033 id=15 +2013-08-27 01:13:59,365+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=15 +2013-08-27 01:13:59,365+0000 INFO Cpu 0827-1301520-000001:9 (quality: 1.0) submitting urn:1377566031936-1377566031996-1377566031997: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/ampl0000.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_ampl0000.out|outdir/xhat10000.out|outdir/xhat20000.out|Re sults/ampl_res0000.out|outdir/ampl0000.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat10000.out outdir/xhat20000.out obj_outdir/obj_ampl0000.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res0000.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,365+0000 INFO Block Started CPU 15:1377566039s +2013-08-27 01:13:59,365+0000 INFO Block Started worker 0827-1301520-000000:000000 +2013-08-27 01:13:59,365+0000 INFO RequestHandler Handler(tag: 3002, REGISTER) unregistering (send) +2013-08-27 01:13:59,365+0000 INFO RequestHandler Handler(tag: 15, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,366+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=10 Cpus sleeping: 1 +2013-08-27 01:13:59,366+0000 INFO Cpu 0827-1301520-000001:10 (quality: 1.0) submitting urn:1377566031933-1377566031999-1377566032000: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0000.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0000.out|outdir/xhat_l10000_00 01.0000.out|outdir/xhat_l20000_0001.0000.out|Results/ampl_res_l0000_0001.0000.out|outdir/out_l0000_0001.0000.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0000.out outdir/xhat_l20000_0001.0000.out obj_outdir/obj_out_l0000_0001.0000.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0000.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,366+0000 INFO RequestHandler Handler(tag: 16, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,366+0000 INFO RequestHandler Handler(tag: 17, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,366+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=11 Cpus sleeping: 1 +2013-08-27 01:13:59,366+0000 INFO Cpu 0827-1301520-000001:11 (quality: 1.0) submitting urn:1377566031930-1377566032002-1377566032003: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0010.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0010.out|outdir/xhat_l10000_00 00.0010.out|outdir/xhat_l20000_0000.0010.out|Results/ampl_res_l0000_0000.0010.out|outdir/out_l0000_0000.0010.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0010.out outdir/xhat_l20000_0000.0010.out obj_outdir/obj_out_l0000_0000.0010.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0010.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,366+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,367+0000 INFO RequestHandler Handler(tag: 18, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,367+0000 INFO RequestHandler Handler(tag: 2538, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,367+0000 INFO RequestHandler Handler(tag: 19, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,367+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=12 Cpus sleeping: 1 +2013-08-27 01:13:59,367+0000 INFO Cpu 0827-1301520-000001:12 (quality: 1.0) submitting urn:1377566031929-1377566032006-1377566032007: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0016.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0016.out|outdir/xhat_l10000_00 01.0016.out|outdir/xhat_l20000_0001.0016.out|Results/ampl_res_l0000_0001.0016.out|outdir/out_l0000_0001.0016.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0016.out outdir/xhat_l20000_0001.0016.out obj_outdir/obj_out_l0000_0001.0016.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0016.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,367+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=13 Cpus sleeping: 1 +2013-08-27 01:13:59,367+0000 INFO Cpu 0827-1301520-000001:13 (quality: 1.0) submitting urn:1377566031948-1377566032009-1377566032010: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0001.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0001.out|outdir/xhat_l10000_00 00.0001.out|outdir/xhat_l20000_0000.0001.out|Results/ampl_res_l0000_0000.0001.out|outdir/out_l0000_0000.0001.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0001.out outdir/xhat_l20000_0000.0001.out obj_outdir/obj_out_l0000_0000.0001.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0001.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,367+0000 INFO RequestHandler Handler(tag: 20, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,368+0000 INFO RequestHandler Handler(tag: 21, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,368+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=14 Cpus sleeping: 1 +2013-08-27 01:13:59,368+0000 INFO Cpu 0827-1301520-000001:14 (quality: 1.0) submitting urn:1377566031928-1377566032012-1377566032013: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0012.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0012.out|outdir/xhat_l10000_00 01.0012.out|outdir/xhat_l20000_0001.0012.out|Results/ampl_res_l0000_0001.0012.out|outdir/out_l0000_0001.0012.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0012.out outdir/xhat_l20000_0001.0012.out obj_outdir/obj_out_l0000_0001.0012.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0012.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,368+0000 INFO GetFileHandler Handler(tag: 2539, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,368+0000 INFO RequestHandler Handler(tag: 22, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,368+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=15 Cpus sleeping: 1 +2013-08-27 01:13:59,368+0000 INFO Cpu 0827-1301520-000001:15 (quality: 1.0) submitting urn:1377566031950-1377566032015-1377566032016: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0004.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0004.out|outdir/xhat_l10000_00 00.0004.out|outdir/xhat_l20000_0000.0004.out|Results/ampl_res_l0000_0000.0004.out|outdir/out_l0000_0000.0004.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0004.out outdir/xhat_l20000_0000.0004.out obj_outdir/obj_out_l0000_0000.0004.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0004.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,368+0000 INFO RequestHandler Handler(tag: 23, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,369+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=0 Cpus sleeping: 1 +2013-08-27 01:13:59,369+0000 INFO Cpu 0827-1301520-000000:0 (quality: 1.0) submitting urn:1377566031932-1377566032018-1377566032019: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0010.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0010.out|outdir/xhat_l10000_000 1.0010.out|outdir/xhat_l20000_0001.0010.out|Results/ampl_res_l0000_0001.0010.out|outdir/out_l0000_0001.0010.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0010.out outdir/xhat_l20000_0001.0010.out obj_outdir/obj_out_l0000_0001.0010.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0010.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,369+0000 INFO RequestHandler Handler(tag: 24, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,370+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=1 Cpus sleeping: 1 +2013-08-27 01:13:59,370+0000 INFO Cpu 0827-1301520-000000:1 (quality: 1.0) submitting urn:1377566031934-1377566032021-1377566032022: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0015.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0015.out|outdir/xhat_l10000_000 1.0015.out|outdir/xhat_l20000_0001.0015.out|Results/ampl_res_l0000_0001.0015.out|outdir/out_l0000_0001.0015.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0015.out outdir/xhat_l20000_0001.0015.out obj_outdir/obj_out_l0000_0001.0015.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0015.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,370+0000 INFO RequestHandler Handler(tag: 25, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,370+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=2 Cpus sleeping: 1 +2013-08-27 01:13:59,370+0000 INFO Cpu 0827-1301520-000000:2 (quality: 1.0) submitting urn:1377566031927-1377566032024-1377566032025: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0008.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0008.out|outdir/xhat_l10000_000 1.0008.out|outdir/xhat_l20000_0001.0008.out|Results/ampl_res_l0000_0001.0008.out|outdir/out_l0000_0001.0008.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0008.out outdir/xhat_l20000_0001.0008.out obj_outdir/obj_out_l0000_0001.0008.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0008.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,370+0000 INFO RequestHandler Handler(tag: 26, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,371+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=3 Cpus sleeping: 1 +2013-08-27 01:13:59,371+0000 INFO Cpu 0827-1301520-000000:3 (quality: 1.0) submitting urn:1377566031943-1377566032027-1377566032028: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0014.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0014.out|outdir/xhat_l10000_000 1.0014.out|outdir/xhat_l20000_0001.0014.out|Results/ampl_res_l0000_0001.0014.out|outdir/out_l0000_0001.0014.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0014.out outdir/xhat_l20000_0001.0014.out obj_outdir/obj_out_l0000_0001.0014.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0014.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,371+0000 INFO RequestHandler Handler(tag: 27, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,371+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=4 Cpus sleeping: 1 +2013-08-27 01:13:59,371+0000 INFO Cpu 0827-1301520-000000:4 (quality: 1.0) submitting urn:1377566031940-1377566032030-1377566032031: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0002.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0002.out|outdir/xhat_l10000_000 0.0002.out|outdir/xhat_l20000_0000.0002.out|Results/ampl_res_l0000_0000.0002.out|outdir/out_l0000_0000.0002.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0002.out outdir/xhat_l20000_0000.0002.out obj_outdir/obj_out_l0000_0000.0002.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0002.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,371+0000 INFO RequestHandler Handler(tag: 28, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,371+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=5 Cpus sleeping: 1 +2013-08-27 01:13:59,372+0000 INFO Cpu 0827-1301520-000000:5 (quality: 1.0) submitting urn:1377566031949-1377566032033-1377566032034: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0003.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0003.out|outdir/xhat_l10000_000 0.0003.out|outdir/xhat_l20000_0000.0003.out|Results/ampl_res_l0000_0000.0003.out|outdir/out_l0000_0000.0003.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0003.out outdir/xhat_l20000_0000.0003.out obj_outdir/obj_out_l0000_0000.0003.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0003.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,372+0000 INFO RequestHandler Handler(tag: 29, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,372+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=6 Cpus sleeping: 1 +2013-08-27 01:13:59,372+0000 INFO Cpu 0827-1301520-000000:6 (quality: 1.0) submitting urn:1377566031942-1377566032036-1377566032037: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0018.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0018.out|outdir/xhat_l10000_000 1.0018.out|outdir/xhat_l20000_0001.0018.out|Results/ampl_res_l0000_0001.0018.out|outdir/out_l0000_0001.0018.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0018.out outdir/xhat_l20000_0001.0018.out obj_outdir/obj_out_l0000_0001.0018.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0018.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,372+0000 INFO RequestHandler Handler(tag: 30, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,372+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=7 Cpus sleeping: 1 +2013-08-27 01:13:59,372+0000 INFO Cpu 0827-1301520-000000:7 (quality: 1.0) submitting urn:1377566031941-1377566032039-1377566032040: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0001.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0001.out|outdir/xhat_l10000_000 1.0001.out|outdir/xhat_l20000_0001.0001.out|Results/ampl_res_l0000_0001.0001.out|outdir/out_l0000_0001.0001.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0001.out outdir/xhat_l20000_0001.0001.out obj_outdir/obj_out_l0000_0001.0001.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0001.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,373+0000 INFO RequestHandler Handler(tag: 31, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,373+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=8 Cpus sleeping: 1 +2013-08-27 01:13:59,373+0000 INFO Cpu 0827-1301520-000000:8 (quality: 1.0) submitting urn:1377566031953-1377566032042-1377566032043: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0005.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0005.out|outdir/xhat_l10000_000 0.0005.out|outdir/xhat_l20000_0000.0005.out|Results/ampl_res_l0000_0000.0005.out|outdir/out_l0000_0000.0005.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0005.out outdir/xhat_l20000_0000.0005.out obj_outdir/obj_out_l0000_0000.0005.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0005.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,373+0000 INFO RequestHandler Handler(tag: 32, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,373+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=9 Cpus sleeping: 1 +2013-08-27 01:13:59,373+0000 INFO Cpu 0827-1301520-000000:9 (quality: 1.0) submitting urn:1377566031954-1377566032045-1377566032046: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0005.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0005.out|outdir/xhat_l10000_000 1.0005.out|outdir/xhat_l20000_0001.0005.out|Results/ampl_res_l0000_0001.0005.out|outdir/out_l0000_0001.0005.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0005.out outdir/xhat_l20000_0001.0005.out obj_outdir/obj_out_l0000_0001.0005.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0005.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,373+0000 INFO RequestHandler Handler(tag: 33, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,374+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=10 Cpus sleeping: 1 +2013-08-27 01:13:59,374+0000 INFO Cpu 0827-1301520-000000:10 (quality: 1.0) submitting urn:1377566031957-1377566032048-1377566032049: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0017.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0017.out|outdir/xhat_l10000_00 01.0017.out|outdir/xhat_l20000_0001.0017.out|Results/ampl_res_l0000_0001.0017.out|outdir/out_l0000_0001.0017.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0017.out outdir/xhat_l20000_0001.0017.out obj_outdir/obj_out_l0000_0001.0017.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0017.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,374+0000 INFO RequestHandler Handler(tag: 34, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,374+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=11 Cpus sleeping: 1 +2013-08-27 01:13:59,374+0000 INFO Cpu 0827-1301520-000000:11 (quality: 1.0) submitting urn:1377566031958-1377566032051-1377566032052: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0006.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0006.out|outdir/xhat_l10000_00 01.0006.out|outdir/xhat_l20000_0001.0006.out|Results/ampl_res_l0000_0001.0006.out|outdir/out_l0000_0001.0006.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0006.out outdir/xhat_l20000_0001.0006.out obj_outdir/obj_out_l0000_0001.0006.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0006.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,374+0000 INFO RequestHandler Handler(tag: 35, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,375+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=12 Cpus sleeping: 1 +2013-08-27 01:13:59,375+0000 INFO Cpu 0827-1301520-000000:12 (quality: 1.0) submitting urn:1377566031962-1377566032054-1377566032055: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0019.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0019.out|outdir/xhat_l10000_00 01.0019.out|outdir/xhat_l20000_0001.0019.out|Results/ampl_res_l0000_0001.0019.out|outdir/out_l0000_0001.0019.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0019.out outdir/xhat_l20000_0001.0019.out obj_outdir/obj_out_l0000_0001.0019.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0019.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,375+0000 INFO RequestHandler Handler(tag: 36, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,375+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=13 Cpus sleeping: 1 +2013-08-27 01:13:59,375+0000 INFO Cpu 0827-1301520-000000:13 (quality: 1.0) submitting urn:1377566031963-1377566032057-1377566032058: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0004.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0004.out|outdir/xhat_l10000_00 01.0004.out|outdir/xhat_l20000_0001.0004.out|Results/ampl_res_l0000_0001.0004.out|outdir/out_l0000_0001.0004.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0004.out outdir/xhat_l20000_0001.0004.out obj_outdir/obj_out_l0000_0001.0004.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0004.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,375+0000 INFO RequestHandler Handler(tag: 37, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,375+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=14 Cpus sleeping: 1 +2013-08-27 01:13:59,376+0000 INFO Cpu 0827-1301520-000000:14 (quality: 1.0) submitting urn:1377566031964-1377566032060-1377566032061: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0006.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0006.out|outdir/xhat_l10000_00 00.0006.out|outdir/xhat_l20000_0000.0006.out|Results/ampl_res_l0000_0000.0006.out|outdir/out_l0000_0000.0006.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0006.out outdir/xhat_l20000_0000.0006.out obj_outdir/obj_out_l0000_0000.0006.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0006.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,376+0000 INFO RequestHandler Handler(tag: 38, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,376+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=15 Cpus sleeping: 1 +2013-08-27 01:13:59,376+0000 INFO Cpu 0827-1301520-000000:15 (quality: 1.0) submitting urn:1377566031966-1377566032063-1377566032064: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0007.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0007.out|outdir/xhat_l10000_00 00.0007.out|outdir/xhat_l20000_0000.0007.out|Results/ampl_res_l0000_0000.0007.out|outdir/out_l0000_0000.0007.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0007.out outdir/xhat_l20000_0000.0007.out obj_outdir/obj_out_l0000_0000.0007.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0007.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:13:59,376+0000 INFO RequestHandler Handler(tag: 39, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,381+0000 INFO GetFileHandler Handler(tag: 2539, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,381+0000 INFO GetFileHandler Handler(tag: 2539, GET) -> 40 +2013-08-27 01:13:59,381+0000 INFO GetFileHandler Handler(tag: 40, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,382+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,383+0000 INFO RequestHandler Handler(tag: 3003, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,383+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,383+0000 INFO RequestHandler Handler(tag: 2540, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,383+0000 INFO GetFileHandler Handler(tag: 40, GET) reader: LR-Handler(tag: 40, GET) +2013-08-27 01:13:59,383+0000 INFO GetFileHandler Handler(tag: 40, GET) sending length: 1925, 579976243 +2013-08-27 01:13:59,383+0000 INFO GetFileHandler Handler(tag: 2539, GET) sending length: 1925, 232442368 +2013-08-27 01:13:59,383+0000 INFO GetFileHandler Handler(tag: 3004, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,383+0000 INFO GetFileHandler Handler(tag: 3004, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,383+0000 INFO GetFileHandler Handler(tag: 3004, GET) -> 45 +2013-08-27 01:13:59,383+0000 INFO GetFileHandler Handler(tag: 2541, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,383+0000 INFO GetFileHandler Handler(tag: 2541, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,383+0000 INFO GetFileHandler Handler(tag: 2541, GET) -> 46 +2013-08-27 01:13:59,384+0000 INFO ReadBuffer RB-LR-Handler(tag: 40, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,384+0000 INFO ReadBuffer RB-LR-Handler(tag: 40, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,384+0000 INFO LocalIOProvider LR-Handler(tag: 40, GET) rbuf: RB-LR-Handler(tag: 40, GET) +2013-08-27 01:13:59,384+0000 INFO Buffers I allocated buffers: {RB-LR-Handler(tag: 40, GET) -> 1} (1) +2013-08-27 01:13:59,384+0000 INFO RequestHandler Handler(tag: 41, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,384+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,385+0000 INFO RequestHandler Handler(tag: 3005, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,385+0000 INFO RequestHandler Handler(tag: 42, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,385+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,385+0000 INFO RequestHandler Handler(tag: 43, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,385+0000 INFO RequestHandler Handler(tag: 2542, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,385+0000 INFO RequestHandler Handler(tag: 44, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,385+0000 INFO GetFileHandler Handler(tag: 40, GET) unregistering (last) +2013-08-27 01:13:59,385+0000 INFO GetFileHandler Handler(tag: 45, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,386+0000 INFO ReadBuffer RB-LR-Handler(tag: 40, GET) de-allocating 1 buffers +2013-08-27 01:13:59,386+0000 INFO GetFileHandler Handler(tag: 45, GET) reader: LR-Handler(tag: 45, GET) +2013-08-27 01:13:59,386+0000 INFO Buffers O allocated buffers: {POW-Command(tag: -1, GET) -> 1} (1) +2013-08-27 01:13:59,386+0000 INFO GetFileHandler Handler(tag: 45, GET) sending length: 1925, 2474267 +2013-08-27 01:13:59,386+0000 INFO GetFileHandler Handler(tag: 2539, GET) unregistering (last) +2013-08-27 01:13:59,386+0000 INFO ReadBuffer RB-LR-Handler(tag: 45, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,386+0000 INFO GetFileHandler Handler(tag: 3006, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,386+0000 INFO GetFileHandler Handler(tag: 3004, GET) sending length: 1925, 673733348 +2013-08-27 01:13:59,386+0000 INFO ReadBuffer RB-LR-Handler(tag: 45, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,386+0000 INFO LocalIOProvider LR-Handler(tag: 45, GET) rbuf: RB-LR-Handler(tag: 45, GET) +2013-08-27 01:13:59,386+0000 INFO GetFileHandler Handler(tag: 3006, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,386+0000 INFO GetFileHandler Handler(tag: 45, GET) unregistering (last) +2013-08-27 01:13:59,386+0000 INFO GetFileHandler Handler(tag: 3006, GET) -> 51 +2013-08-27 01:13:59,386+0000 INFO ReadBuffer RB-LR-Handler(tag: 45, GET) de-allocating 1 buffers +2013-08-27 01:13:59,386+0000 INFO GetFileHandler Handler(tag: 3004, GET) unregistering (last) +2013-08-27 01:13:59,386+0000 INFO GetFileHandler Handler(tag: 46, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,386+0000 INFO GetFileHandler Handler(tag: 2543, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,386+0000 INFO GetFileHandler Handler(tag: 46, GET) reader: LR-Handler(tag: 46, GET) +2013-08-27 01:13:59,386+0000 INFO GetFileHandler Handler(tag: 2543, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,386+0000 INFO GetFileHandler Handler(tag: 46, GET) sending length: 1925, 1460675721 +2013-08-27 01:13:59,386+0000 INFO GetFileHandler Handler(tag: 2543, GET) -> 52 +2013-08-27 01:13:59,386+0000 INFO ReadBuffer RB-LR-Handler(tag: 46, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,386+0000 INFO GetFileHandler Handler(tag: 2541, GET) sending length: 1925, 1691273990 +2013-08-27 01:13:59,386+0000 INFO ReadBuffer RB-LR-Handler(tag: 46, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,386+0000 INFO LocalIOProvider LR-Handler(tag: 46, GET) rbuf: RB-LR-Handler(tag: 46, GET) +2013-08-27 01:13:59,386+0000 INFO GetFileHandler Handler(tag: 46, GET) unregistering (last) +2013-08-27 01:13:59,387+0000 INFO ReadBuffer RB-LR-Handler(tag: 46, GET) de-allocating 1 buffers +2013-08-27 01:13:59,387+0000 INFO GetFileHandler Handler(tag: 2541, GET) unregistering (last) +2013-08-27 01:13:59,387+0000 INFO RequestHandler Handler(tag: 47, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,387+0000 INFO RequestHandler Handler(tag: 48, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,387+0000 INFO RequestHandler Handler(tag: 49, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,387+0000 INFO RequestHandler Handler(tag: 50, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,387+0000 INFO GetFileHandler Handler(tag: 51, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,387+0000 INFO GetFileHandler Handler(tag: 51, GET) reader: LR-Handler(tag: 51, GET) +2013-08-27 01:13:59,387+0000 INFO GetFileHandler Handler(tag: 51, GET) sending length: 1925, 1032247301 +2013-08-27 01:13:59,387+0000 INFO GetFileHandler Handler(tag: 3006, GET) sending length: 1925, 1607487441 +2013-08-27 01:13:59,387+0000 INFO ReadBuffer RB-LR-Handler(tag: 51, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,387+0000 INFO ReadBuffer RB-LR-Handler(tag: 51, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,388+0000 INFO LocalIOProvider LR-Handler(tag: 51, GET) rbuf: RB-LR-Handler(tag: 51, GET) +2013-08-27 01:13:59,388+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,388+0000 INFO GetFileHandler Handler(tag: 51, GET) unregistering (last) +2013-08-27 01:13:59,388+0000 INFO RequestHandler Handler(tag: 3007, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,388+0000 INFO ReadBuffer RB-LR-Handler(tag: 51, GET) de-allocating 1 buffers +2013-08-27 01:13:59,388+0000 INFO GetFileHandler Handler(tag: 52, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,388+0000 INFO GetFileHandler Handler(tag: 3006, GET) unregistering (last) +2013-08-27 01:13:59,388+0000 INFO GetFileHandler Handler(tag: 52, GET) reader: LR-Handler(tag: 52, GET) +2013-08-27 01:13:59,388+0000 INFO GetFileHandler Handler(tag: 52, GET) sending length: 1925, 895071792 +2013-08-27 01:13:59,388+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,388+0000 INFO GetFileHandler Handler(tag: 2543, GET) sending length: 1925, 1034567771 +2013-08-27 01:13:59,388+0000 INFO ReadBuffer RB-LR-Handler(tag: 52, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,388+0000 INFO ReadBuffer RB-LR-Handler(tag: 52, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,388+0000 INFO RequestHandler Handler(tag: 2544, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,388+0000 INFO LocalIOProvider LR-Handler(tag: 52, GET) rbuf: RB-LR-Handler(tag: 52, GET) +2013-08-27 01:13:59,388+0000 INFO GetFileHandler Handler(tag: 52, GET) unregistering (last) +2013-08-27 01:13:59,388+0000 INFO ReadBuffer RB-LR-Handler(tag: 52, GET) de-allocating 1 buffers +2013-08-27 01:13:59,388+0000 INFO GetFileHandler Handler(tag: 2543, GET) unregistering (last) +2013-08-27 01:13:59,388+0000 INFO RequestHandler Handler(tag: 53, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,388+0000 INFO RequestHandler Handler(tag: 54, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,389+0000 INFO GetFileHandler Handler(tag: 3008, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,389+0000 INFO RequestHandler Handler(tag: 55, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,389+0000 INFO GetFileHandler Handler(tag: 3008, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,389+0000 INFO GetFileHandler Handler(tag: 3008, GET) -> 57 +2013-08-27 01:13:59,389+0000 INFO RequestHandler Handler(tag: 56, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,389+0000 INFO GetFileHandler Handler(tag: 2545, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,389+0000 INFO GetFileHandler Handler(tag: 2545, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,389+0000 INFO GetFileHandler Handler(tag: 57, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,389+0000 INFO GetFileHandler Handler(tag: 2545, GET) -> 58 +2013-08-27 01:13:59,389+0000 INFO GetFileHandler Handler(tag: 57, GET) reader: LR-Handler(tag: 57, GET) +2013-08-27 01:13:59,389+0000 INFO GetFileHandler Handler(tag: 57, GET) sending length: 1925, 1292849429 +2013-08-27 01:13:59,389+0000 INFO GetFileHandler Handler(tag: 3008, GET) sending length: 1925, 680812857 +2013-08-27 01:13:59,389+0000 INFO ReadBuffer RB-LR-Handler(tag: 57, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,389+0000 INFO ReadBuffer RB-LR-Handler(tag: 57, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,389+0000 INFO LocalIOProvider LR-Handler(tag: 57, GET) rbuf: RB-LR-Handler(tag: 57, GET) +2013-08-27 01:13:59,389+0000 INFO GetFileHandler Handler(tag: 57, GET) unregistering (last) +2013-08-27 01:13:59,389+0000 INFO GetFileHandler Handler(tag: 58, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,390+0000 INFO ReadBuffer RB-LR-Handler(tag: 57, GET) de-allocating 1 buffers +2013-08-27 01:13:59,390+0000 INFO GetFileHandler Handler(tag: 3008, GET) unregistering (last) +2013-08-27 01:13:59,390+0000 INFO GetFileHandler Handler(tag: 58, GET) reader: LR-Handler(tag: 58, GET) +2013-08-27 01:13:59,390+0000 INFO GetFileHandler Handler(tag: 58, GET) sending length: 1925, 515737837 +2013-08-27 01:13:59,390+0000 INFO GetFileHandler Handler(tag: 2545, GET) sending length: 1925, 1062047763 +2013-08-27 01:13:59,390+0000 INFO ReadBuffer RB-LR-Handler(tag: 58, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,390+0000 INFO ReadBuffer RB-LR-Handler(tag: 58, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,390+0000 INFO LocalIOProvider LR-Handler(tag: 58, GET) rbuf: RB-LR-Handler(tag: 58, GET) +2013-08-27 01:13:59,390+0000 INFO GetFileHandler Handler(tag: 58, GET) unregistering (last) +2013-08-27 01:13:59,390+0000 INFO ReadBuffer RB-LR-Handler(tag: 58, GET) de-allocating 1 buffers +2013-08-27 01:13:59,390+0000 INFO GetFileHandler Handler(tag: 2545, GET) unregistering (last) +2013-08-27 01:13:59,390+0000 INFO RequestHandler Handler(tag: 59, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,390+0000 INFO RequestHandler Handler(tag: 60, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,390+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,391+0000 INFO RequestHandler Handler(tag: 3009, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,391+0000 INFO RequestHandler Handler(tag: 61, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,391+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,391+0000 INFO RequestHandler Handler(tag: 2546, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,391+0000 INFO RequestHandler Handler(tag: 62, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,391+0000 INFO GetFileHandler Handler(tag: 3010, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,391+0000 INFO GetFileHandler Handler(tag: 3010, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,391+0000 INFO GetFileHandler Handler(tag: 3010, GET) -> 63 +2013-08-27 01:13:59,391+0000 INFO GetFileHandler Handler(tag: 63, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,391+0000 INFO GetFileHandler Handler(tag: 2547, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,391+0000 INFO GetFileHandler Handler(tag: 2547, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,392+0000 INFO GetFileHandler Handler(tag: 63, GET) reader: LR-Handler(tag: 63, GET) +2013-08-27 01:13:59,392+0000 INFO GetFileHandler Handler(tag: 2547, GET) -> 64 +2013-08-27 01:13:59,392+0000 INFO GetFileHandler Handler(tag: 63, GET) sending length: 1925, 393903022 +2013-08-27 01:13:59,392+0000 INFO GetFileHandler Handler(tag: 3010, GET) sending length: 1925, 1783490700 +2013-08-27 01:13:59,392+0000 INFO ReadBuffer RB-LR-Handler(tag: 63, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,392+0000 INFO ReadBuffer RB-LR-Handler(tag: 63, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,392+0000 INFO LocalIOProvider LR-Handler(tag: 63, GET) rbuf: RB-LR-Handler(tag: 63, GET) +2013-08-27 01:13:59,392+0000 INFO GetFileHandler Handler(tag: 63, GET) unregistering (last) +2013-08-27 01:13:59,392+0000 INFO GetFileHandler Handler(tag: 64, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,392+0000 INFO ReadBuffer RB-LR-Handler(tag: 63, GET) de-allocating 1 buffers +2013-08-27 01:13:59,392+0000 INFO GetFileHandler Handler(tag: 3010, GET) unregistering (last) +2013-08-27 01:13:59,392+0000 INFO GetFileHandler Handler(tag: 64, GET) reader: LR-Handler(tag: 64, GET) +2013-08-27 01:13:59,392+0000 INFO GetFileHandler Handler(tag: 64, GET) sending length: 1925, 1951428684 +2013-08-27 01:13:59,392+0000 INFO ReadBuffer RB-LR-Handler(tag: 64, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,392+0000 INFO GetFileHandler Handler(tag: 2547, GET) sending length: 1925, 1104772279 +2013-08-27 01:13:59,392+0000 INFO ReadBuffer RB-LR-Handler(tag: 64, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,392+0000 INFO LocalIOProvider LR-Handler(tag: 64, GET) rbuf: RB-LR-Handler(tag: 64, GET) +2013-08-27 01:13:59,392+0000 INFO GetFileHandler Handler(tag: 64, GET) unregistering (last) +2013-08-27 01:13:59,392+0000 INFO ReadBuffer RB-LR-Handler(tag: 64, GET) de-allocating 1 buffers +2013-08-27 01:13:59,392+0000 INFO GetFileHandler Handler(tag: 2547, GET) unregistering (last) +2013-08-27 01:13:59,392+0000 INFO RequestHandler Handler(tag: 65, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,393+0000 INFO RequestHandler Handler(tag: 66, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,393+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,393+0000 INFO RequestHandler Handler(tag: 3011, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,393+0000 INFO RequestHandler Handler(tag: 67, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,393+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,393+0000 INFO RequestHandler Handler(tag: 2548, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,393+0000 INFO RequestHandler Handler(tag: 68, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,394+0000 INFO GetFileHandler Handler(tag: 3012, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,394+0000 INFO GetFileHandler Handler(tag: 3012, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,394+0000 INFO GetFileHandler Handler(tag: 3012, GET) -> 69 +2013-08-27 01:13:59,394+0000 INFO GetFileHandler Handler(tag: 69, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,394+0000 INFO GetFileHandler Handler(tag: 2549, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,394+0000 INFO GetFileHandler Handler(tag: 2549, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,394+0000 INFO GetFileHandler Handler(tag: 69, GET) reader: LR-Handler(tag: 69, GET) +2013-08-27 01:13:59,394+0000 INFO GetFileHandler Handler(tag: 2549, GET) -> 70 +2013-08-27 01:13:59,394+0000 INFO GetFileHandler Handler(tag: 69, GET) sending length: 1925, 1280890835 +2013-08-27 01:13:59,394+0000 INFO ReadBuffer RB-LR-Handler(tag: 69, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,394+0000 INFO GetFileHandler Handler(tag: 3012, GET) sending length: 1925, 1556186317 +2013-08-27 01:13:59,394+0000 INFO ReadBuffer RB-LR-Handler(tag: 69, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,394+0000 INFO LocalIOProvider LR-Handler(tag: 69, GET) rbuf: RB-LR-Handler(tag: 69, GET) +2013-08-27 01:13:59,394+0000 INFO GetFileHandler Handler(tag: 69, GET) unregistering (last) +2013-08-27 01:13:59,394+0000 INFO GetFileHandler Handler(tag: 70, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,394+0000 INFO ReadBuffer RB-LR-Handler(tag: 69, GET) de-allocating 1 buffers +2013-08-27 01:13:59,394+0000 INFO GetFileHandler Handler(tag: 3012, GET) unregistering (last) +2013-08-27 01:13:59,394+0000 INFO GetFileHandler Handler(tag: 70, GET) reader: LR-Handler(tag: 70, GET) +2013-08-27 01:13:59,395+0000 INFO GetFileHandler Handler(tag: 70, GET) sending length: 1925, 757303999 +2013-08-27 01:13:59,395+0000 INFO GetFileHandler Handler(tag: 2549, GET) sending length: 1925, 102017729 +2013-08-27 01:13:59,395+0000 INFO ReadBuffer RB-LR-Handler(tag: 70, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,395+0000 INFO ReadBuffer RB-LR-Handler(tag: 70, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,395+0000 INFO LocalIOProvider LR-Handler(tag: 70, GET) rbuf: RB-LR-Handler(tag: 70, GET) +2013-08-27 01:13:59,395+0000 INFO GetFileHandler Handler(tag: 70, GET) unregistering (last) +2013-08-27 01:13:59,395+0000 INFO GetFileHandler Handler(tag: 2549, GET) unregistering (last) +2013-08-27 01:13:59,395+0000 INFO ReadBuffer RB-LR-Handler(tag: 70, GET) de-allocating 1 buffers +2013-08-27 01:13:59,395+0000 INFO RequestHandler Handler(tag: 71, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,395+0000 INFO RequestHandler Handler(tag: 72, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,395+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,395+0000 INFO RequestHandler Handler(tag: 3013, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,396+0000 INFO RequestHandler Handler(tag: 73, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,396+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,396+0000 INFO RequestHandler Handler(tag: 2550, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,396+0000 INFO RequestHandler Handler(tag: 74, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,396+0000 INFO GetFileHandler Handler(tag: 3014, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,396+0000 INFO GetFileHandler Handler(tag: 3014, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,396+0000 INFO GetFileHandler Handler(tag: 3014, GET) -> 75 +2013-08-27 01:13:59,396+0000 INFO GetFileHandler Handler(tag: 75, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,396+0000 INFO GetFileHandler Handler(tag: 2551, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,396+0000 INFO GetFileHandler Handler(tag: 75, GET) reader: LR-Handler(tag: 75, GET) +2013-08-27 01:13:59,396+0000 INFO GetFileHandler Handler(tag: 2551, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,396+0000 INFO GetFileHandler Handler(tag: 75, GET) sending length: 1925, 2111640038 +2013-08-27 01:13:59,396+0000 INFO GetFileHandler Handler(tag: 2551, GET) -> 76 +2013-08-27 01:13:59,396+0000 INFO GetFileHandler Handler(tag: 3014, GET) sending length: 1925, 1019368344 +2013-08-27 01:13:59,396+0000 INFO ReadBuffer RB-LR-Handler(tag: 75, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,396+0000 INFO ReadBuffer RB-LR-Handler(tag: 75, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,396+0000 INFO LocalIOProvider LR-Handler(tag: 75, GET) rbuf: RB-LR-Handler(tag: 75, GET) +2013-08-27 01:13:59,396+0000 INFO GetFileHandler Handler(tag: 75, GET) unregistering (last) +2013-08-27 01:13:59,397+0000 INFO ReadBuffer RB-LR-Handler(tag: 75, GET) de-allocating 1 buffers +2013-08-27 01:13:59,397+0000 INFO GetFileHandler Handler(tag: 3014, GET) unregistering (last) +2013-08-27 01:13:59,397+0000 INFO GetFileHandler Handler(tag: 76, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,397+0000 INFO GetFileHandler Handler(tag: 76, GET) reader: LR-Handler(tag: 76, GET) +2013-08-27 01:13:59,397+0000 INFO GetFileHandler Handler(tag: 76, GET) sending length: 1925, 822207122 +2013-08-27 01:13:59,397+0000 INFO ReadBuffer RB-LR-Handler(tag: 76, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,397+0000 INFO GetFileHandler Handler(tag: 2551, GET) sending length: 1925, 2091003888 +2013-08-27 01:13:59,397+0000 INFO ReadBuffer RB-LR-Handler(tag: 76, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,397+0000 INFO LocalIOProvider LR-Handler(tag: 76, GET) rbuf: RB-LR-Handler(tag: 76, GET) +2013-08-27 01:13:59,397+0000 INFO GetFileHandler Handler(tag: 76, GET) unregistering (last) +2013-08-27 01:13:59,397+0000 INFO ReadBuffer RB-LR-Handler(tag: 76, GET) de-allocating 1 buffers +2013-08-27 01:13:59,397+0000 INFO GetFileHandler Handler(tag: 2551, GET) unregistering (last) +2013-08-27 01:13:59,397+0000 INFO RequestHandler Handler(tag: 77, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,397+0000 INFO RequestHandler Handler(tag: 78, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,398+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,398+0000 INFO RequestHandler Handler(tag: 3015, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,398+0000 INFO RequestHandler Handler(tag: 79, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,398+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,398+0000 INFO RequestHandler Handler(tag: 2552, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,398+0000 INFO RequestHandler Handler(tag: 80, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,398+0000 INFO GetFileHandler Handler(tag: 3016, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,398+0000 INFO GetFileHandler Handler(tag: 3016, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,398+0000 INFO GetFileHandler Handler(tag: 3016, GET) -> 81 +2013-08-27 01:13:59,398+0000 INFO GetFileHandler Handler(tag: 81, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,398+0000 INFO GetFileHandler Handler(tag: 2553, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,398+0000 INFO GetFileHandler Handler(tag: 2553, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,398+0000 INFO GetFileHandler Handler(tag: 81, GET) reader: LR-Handler(tag: 81, GET) +2013-08-27 01:13:59,399+0000 INFO GetFileHandler Handler(tag: 2553, GET) -> 82 +2013-08-27 01:13:59,399+0000 INFO GetFileHandler Handler(tag: 81, GET) sending length: 1925, 1585222203 +2013-08-27 01:13:59,399+0000 INFO GetFileHandler Handler(tag: 3016, GET) sending length: 1925, 1147441139 +2013-08-27 01:13:59,399+0000 INFO ReadBuffer RB-LR-Handler(tag: 81, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,399+0000 INFO ReadBuffer RB-LR-Handler(tag: 81, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,399+0000 INFO LocalIOProvider LR-Handler(tag: 81, GET) rbuf: RB-LR-Handler(tag: 81, GET) +2013-08-27 01:13:59,399+0000 INFO GetFileHandler Handler(tag: 81, GET) unregistering (last) +2013-08-27 01:13:59,399+0000 INFO GetFileHandler Handler(tag: 82, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,399+0000 INFO ReadBuffer RB-LR-Handler(tag: 81, GET) de-allocating 1 buffers +2013-08-27 01:13:59,399+0000 INFO GetFileHandler Handler(tag: 3016, GET) unregistering (last) +2013-08-27 01:13:59,399+0000 INFO GetFileHandler Handler(tag: 82, GET) reader: LR-Handler(tag: 82, GET) +2013-08-27 01:13:59,399+0000 INFO GetFileHandler Handler(tag: 82, GET) sending length: 1925, 362965846 +2013-08-27 01:13:59,399+0000 INFO GetFileHandler Handler(tag: 2553, GET) sending length: 1925, 27107283 +2013-08-27 01:13:59,399+0000 INFO ReadBuffer RB-LR-Handler(tag: 82, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,399+0000 INFO ReadBuffer RB-LR-Handler(tag: 82, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,399+0000 INFO LocalIOProvider LR-Handler(tag: 82, GET) rbuf: RB-LR-Handler(tag: 82, GET) +2013-08-27 01:13:59,399+0000 INFO GetFileHandler Handler(tag: 82, GET) unregistering (last) +2013-08-27 01:13:59,399+0000 INFO ReadBuffer RB-LR-Handler(tag: 82, GET) de-allocating 1 buffers +2013-08-27 01:13:59,399+0000 INFO GetFileHandler Handler(tag: 2553, GET) unregistering (last) +2013-08-27 01:13:59,399+0000 INFO RequestHandler Handler(tag: 83, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,400+0000 INFO RequestHandler Handler(tag: 84, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,400+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,400+0000 INFO RequestHandler Handler(tag: 3017, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,400+0000 INFO RequestHandler Handler(tag: 85, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,400+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,400+0000 INFO RequestHandler Handler(tag: 2554, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,400+0000 INFO RequestHandler Handler(tag: 86, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,400+0000 INFO GetFileHandler Handler(tag: 3018, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,400+0000 INFO GetFileHandler Handler(tag: 3018, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,401+0000 INFO GetFileHandler Handler(tag: 3018, GET) -> 87 +2013-08-27 01:13:59,401+0000 INFO GetFileHandler Handler(tag: 87, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,401+0000 INFO GetFileHandler Handler(tag: 2555, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,401+0000 INFO GetFileHandler Handler(tag: 2555, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,401+0000 INFO GetFileHandler Handler(tag: 87, GET) reader: LR-Handler(tag: 87, GET) +2013-08-27 01:13:59,401+0000 INFO GetFileHandler Handler(tag: 2555, GET) -> 88 +2013-08-27 01:13:59,401+0000 INFO GetFileHandler Handler(tag: 87, GET) sending length: 1925, 1958960935 +2013-08-27 01:13:59,401+0000 INFO GetFileHandler Handler(tag: 3018, GET) sending length: 1925, 1184642388 +2013-08-27 01:13:59,401+0000 INFO ReadBuffer RB-LR-Handler(tag: 87, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,401+0000 INFO ReadBuffer RB-LR-Handler(tag: 87, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,401+0000 INFO LocalIOProvider LR-Handler(tag: 87, GET) rbuf: RB-LR-Handler(tag: 87, GET) +2013-08-27 01:13:59,401+0000 INFO GetFileHandler Handler(tag: 87, GET) unregistering (last) +2013-08-27 01:13:59,401+0000 INFO GetFileHandler Handler(tag: 88, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,401+0000 INFO ReadBuffer RB-LR-Handler(tag: 87, GET) de-allocating 1 buffers +2013-08-27 01:13:59,401+0000 INFO GetFileHandler Handler(tag: 3018, GET) unregistering (last) +2013-08-27 01:13:59,401+0000 INFO GetFileHandler Handler(tag: 88, GET) reader: LR-Handler(tag: 88, GET) +2013-08-27 01:13:59,401+0000 INFO GetFileHandler Handler(tag: 88, GET) sending length: 1925, 11877363 +2013-08-27 01:13:59,401+0000 INFO ReadBuffer RB-LR-Handler(tag: 88, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,401+0000 INFO GetFileHandler Handler(tag: 2555, GET) sending length: 1925, 229464416 +2013-08-27 01:13:59,401+0000 INFO ReadBuffer RB-LR-Handler(tag: 88, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,401+0000 INFO LocalIOProvider LR-Handler(tag: 88, GET) rbuf: RB-LR-Handler(tag: 88, GET) +2013-08-27 01:13:59,401+0000 INFO GetFileHandler Handler(tag: 88, GET) unregistering (last) +2013-08-27 01:13:59,401+0000 INFO ReadBuffer RB-LR-Handler(tag: 88, GET) de-allocating 1 buffers +2013-08-27 01:13:59,401+0000 INFO RequestHandler Handler(tag: 89, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,401+0000 INFO GetFileHandler Handler(tag: 2555, GET) unregistering (last) +2013-08-27 01:13:59,402+0000 INFO RequestHandler Handler(tag: 90, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,402+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,402+0000 INFO RequestHandler Handler(tag: 3019, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,402+0000 INFO RequestHandler Handler(tag: 91, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,402+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,402+0000 INFO RequestHandler Handler(tag: 2556, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,402+0000 INFO RequestHandler Handler(tag: 92, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,403+0000 INFO GetFileHandler Handler(tag: 3020, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,403+0000 INFO GetFileHandler Handler(tag: 3020, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,403+0000 INFO GetFileHandler Handler(tag: 3020, GET) -> 93 +2013-08-27 01:13:59,403+0000 INFO GetFileHandler Handler(tag: 93, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,403+0000 INFO GetFileHandler Handler(tag: 2557, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,403+0000 INFO GetFileHandler Handler(tag: 2557, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,403+0000 INFO GetFileHandler Handler(tag: 93, GET) reader: LR-Handler(tag: 93, GET) +2013-08-27 01:13:59,403+0000 INFO GetFileHandler Handler(tag: 2557, GET) -> 94 +2013-08-27 01:13:59,403+0000 INFO GetFileHandler Handler(tag: 93, GET) sending length: 1925, 1724859291 +2013-08-27 01:13:59,403+0000 INFO GetFileHandler Handler(tag: 3020, GET) sending length: 1925, 828352984 +2013-08-27 01:13:59,403+0000 INFO ReadBuffer RB-LR-Handler(tag: 93, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,403+0000 INFO ReadBuffer RB-LR-Handler(tag: 93, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,403+0000 INFO LocalIOProvider LR-Handler(tag: 93, GET) rbuf: RB-LR-Handler(tag: 93, GET) +2013-08-27 01:13:59,403+0000 INFO GetFileHandler Handler(tag: 93, GET) unregistering (last) +2013-08-27 01:13:59,403+0000 INFO GetFileHandler Handler(tag: 94, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,403+0000 INFO GetFileHandler Handler(tag: 3020, GET) unregistering (last) +2013-08-27 01:13:59,403+0000 INFO ReadBuffer RB-LR-Handler(tag: 93, GET) de-allocating 1 buffers +2013-08-27 01:13:59,403+0000 INFO GetFileHandler Handler(tag: 94, GET) reader: LR-Handler(tag: 94, GET) +2013-08-27 01:13:59,403+0000 INFO GetFileHandler Handler(tag: 94, GET) sending length: 1925, 113324400 +2013-08-27 01:13:59,403+0000 INFO ReadBuffer RB-LR-Handler(tag: 94, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,403+0000 INFO GetFileHandler Handler(tag: 2557, GET) sending length: 1925, 1972679558 +2013-08-27 01:13:59,403+0000 INFO ReadBuffer RB-LR-Handler(tag: 94, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,403+0000 INFO LocalIOProvider LR-Handler(tag: 94, GET) rbuf: RB-LR-Handler(tag: 94, GET) +2013-08-27 01:13:59,403+0000 INFO GetFileHandler Handler(tag: 94, GET) unregistering (last) +2013-08-27 01:13:59,404+0000 INFO ReadBuffer RB-LR-Handler(tag: 94, GET) de-allocating 1 buffers +2013-08-27 01:13:59,404+0000 INFO GetFileHandler Handler(tag: 2557, GET) unregistering (last) +2013-08-27 01:13:59,404+0000 INFO RequestHandler Handler(tag: 95, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,404+0000 INFO RequestHandler Handler(tag: 96, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,404+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,404+0000 INFO RequestHandler Handler(tag: 3021, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,404+0000 INFO RequestHandler Handler(tag: 97, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,404+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,404+0000 INFO RequestHandler Handler(tag: 2558, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,405+0000 INFO RequestHandler Handler(tag: 98, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,405+0000 INFO GetFileHandler Handler(tag: 3022, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,405+0000 INFO GetFileHandler Handler(tag: 3022, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,405+0000 INFO GetFileHandler Handler(tag: 3022, GET) -> 99 +2013-08-27 01:13:59,405+0000 INFO GetFileHandler Handler(tag: 99, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,405+0000 INFO GetFileHandler Handler(tag: 2559, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,405+0000 INFO GetFileHandler Handler(tag: 2559, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,405+0000 INFO GetFileHandler Handler(tag: 99, GET) reader: LR-Handler(tag: 99, GET) +2013-08-27 01:13:59,405+0000 INFO GetFileHandler Handler(tag: 2559, GET) -> 100 +2013-08-27 01:13:59,405+0000 INFO GetFileHandler Handler(tag: 99, GET) sending length: 1925, 1266137668 +2013-08-27 01:13:59,405+0000 INFO ReadBuffer RB-LR-Handler(tag: 99, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,405+0000 INFO GetFileHandler Handler(tag: 3022, GET) sending length: 1925, 560327953 +2013-08-27 01:13:59,405+0000 INFO ReadBuffer RB-LR-Handler(tag: 99, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,405+0000 INFO LocalIOProvider LR-Handler(tag: 99, GET) rbuf: RB-LR-Handler(tag: 99, GET) +2013-08-27 01:13:59,405+0000 INFO GetFileHandler Handler(tag: 99, GET) unregistering (last) +2013-08-27 01:13:59,405+0000 INFO GetFileHandler Handler(tag: 100, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,406+0000 INFO ReadBuffer RB-LR-Handler(tag: 99, GET) de-allocating 1 buffers +2013-08-27 01:13:59,406+0000 INFO GetFileHandler Handler(tag: 3022, GET) unregistering (last) +2013-08-27 01:13:59,406+0000 INFO GetFileHandler Handler(tag: 100, GET) reader: LR-Handler(tag: 100, GET) +2013-08-27 01:13:59,406+0000 INFO GetFileHandler Handler(tag: 100, GET) sending length: 1925, 861309059 +2013-08-27 01:13:59,406+0000 INFO ReadBuffer RB-LR-Handler(tag: 100, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,406+0000 INFO GetFileHandler Handler(tag: 2559, GET) sending length: 1925, 1981573833 +2013-08-27 01:13:59,406+0000 INFO ReadBuffer RB-LR-Handler(tag: 100, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,406+0000 INFO LocalIOProvider LR-Handler(tag: 100, GET) rbuf: RB-LR-Handler(tag: 100, GET) +2013-08-27 01:13:59,406+0000 INFO GetFileHandler Handler(tag: 100, GET) unregistering (last) +2013-08-27 01:13:59,406+0000 INFO GetFileHandler Handler(tag: 2559, GET) unregistering (last) +2013-08-27 01:13:59,406+0000 INFO ReadBuffer RB-LR-Handler(tag: 100, GET) de-allocating 1 buffers +2013-08-27 01:13:59,406+0000 INFO RequestHandler Handler(tag: 101, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,406+0000 INFO RequestHandler Handler(tag: 102, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,407+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,407+0000 INFO RequestHandler Handler(tag: 3023, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,407+0000 INFO RequestHandler Handler(tag: 103, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,407+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,407+0000 INFO RequestHandler Handler(tag: 2560, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,407+0000 INFO RequestHandler Handler(tag: 104, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,407+0000 INFO GetFileHandler Handler(tag: 3024, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,407+0000 INFO GetFileHandler Handler(tag: 3024, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,407+0000 INFO GetFileHandler Handler(tag: 3024, GET) -> 105 +2013-08-27 01:13:59,407+0000 INFO GetFileHandler Handler(tag: 105, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,407+0000 INFO GetFileHandler Handler(tag: 2561, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,407+0000 INFO GetFileHandler Handler(tag: 2561, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,407+0000 INFO GetFileHandler Handler(tag: 105, GET) reader: LR-Handler(tag: 105, GET) +2013-08-27 01:13:59,407+0000 INFO GetFileHandler Handler(tag: 2561, GET) -> 106 +2013-08-27 01:13:59,407+0000 INFO GetFileHandler Handler(tag: 105, GET) sending length: 1925, 962070825 +2013-08-27 01:13:59,407+0000 INFO GetFileHandler Handler(tag: 3024, GET) sending length: 1925, 1119977512 +2013-08-27 01:13:59,407+0000 INFO ReadBuffer RB-LR-Handler(tag: 105, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,407+0000 INFO ReadBuffer RB-LR-Handler(tag: 105, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,407+0000 INFO LocalIOProvider LR-Handler(tag: 105, GET) rbuf: RB-LR-Handler(tag: 105, GET) +2013-08-27 01:13:59,407+0000 INFO GetFileHandler Handler(tag: 105, GET) unregistering (last) +2013-08-27 01:13:59,407+0000 INFO GetFileHandler Handler(tag: 106, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,408+0000 INFO ReadBuffer RB-LR-Handler(tag: 105, GET) de-allocating 1 buffers +2013-08-27 01:13:59,408+0000 INFO GetFileHandler Handler(tag: 3024, GET) unregistering (last) +2013-08-27 01:13:59,408+0000 INFO GetFileHandler Handler(tag: 106, GET) reader: LR-Handler(tag: 106, GET) +2013-08-27 01:13:59,408+0000 INFO GetFileHandler Handler(tag: 106, GET) sending length: 1925, 1251476784 +2013-08-27 01:13:59,408+0000 INFO GetFileHandler Handler(tag: 2561, GET) sending length: 1925, 1275442086 +2013-08-27 01:13:59,408+0000 INFO ReadBuffer RB-LR-Handler(tag: 106, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,408+0000 INFO ReadBuffer RB-LR-Handler(tag: 106, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,408+0000 INFO LocalIOProvider LR-Handler(tag: 106, GET) rbuf: RB-LR-Handler(tag: 106, GET) +2013-08-27 01:13:59,408+0000 INFO GetFileHandler Handler(tag: 106, GET) unregistering (last) +2013-08-27 01:13:59,408+0000 INFO ReadBuffer RB-LR-Handler(tag: 106, GET) de-allocating 1 buffers +2013-08-27 01:13:59,408+0000 INFO GetFileHandler Handler(tag: 2561, GET) unregistering (last) +2013-08-27 01:13:59,408+0000 INFO RequestHandler Handler(tag: 107, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,408+0000 INFO RequestHandler Handler(tag: 108, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,408+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,408+0000 INFO RequestHandler Handler(tag: 3025, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,409+0000 INFO RequestHandler Handler(tag: 109, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,409+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,409+0000 INFO RequestHandler Handler(tag: 2562, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,409+0000 INFO RequestHandler Handler(tag: 110, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,409+0000 INFO GetFileHandler Handler(tag: 3026, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,409+0000 INFO GetFileHandler Handler(tag: 3026, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,409+0000 INFO GetFileHandler Handler(tag: 3026, GET) -> 111 +2013-08-27 01:13:59,409+0000 INFO GetFileHandler Handler(tag: 111, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,409+0000 INFO GetFileHandler Handler(tag: 2563, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,409+0000 INFO GetFileHandler Handler(tag: 2563, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,409+0000 INFO GetFileHandler Handler(tag: 111, GET) reader: LR-Handler(tag: 111, GET) +2013-08-27 01:13:59,409+0000 INFO GetFileHandler Handler(tag: 2563, GET) -> 112 +2013-08-27 01:13:59,409+0000 INFO GetFileHandler Handler(tag: 111, GET) sending length: 1925, 943319734 +2013-08-27 01:13:59,409+0000 INFO GetFileHandler Handler(tag: 3026, GET) sending length: 1925, 1650487184 +2013-08-27 01:13:59,409+0000 INFO ReadBuffer RB-LR-Handler(tag: 111, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,409+0000 INFO ReadBuffer RB-LR-Handler(tag: 111, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,409+0000 INFO LocalIOProvider LR-Handler(tag: 111, GET) rbuf: RB-LR-Handler(tag: 111, GET) +2013-08-27 01:13:59,409+0000 INFO GetFileHandler Handler(tag: 111, GET) unregistering (last) +2013-08-27 01:13:59,409+0000 INFO GetFileHandler Handler(tag: 112, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,409+0000 INFO ReadBuffer RB-LR-Handler(tag: 111, GET) de-allocating 1 buffers +2013-08-27 01:13:59,409+0000 INFO GetFileHandler Handler(tag: 3026, GET) unregistering (last) +2013-08-27 01:13:59,409+0000 INFO GetFileHandler Handler(tag: 112, GET) reader: LR-Handler(tag: 112, GET) +2013-08-27 01:13:59,409+0000 INFO GetFileHandler Handler(tag: 112, GET) sending length: 1925, 1848873994 +2013-08-27 01:13:59,410+0000 INFO GetFileHandler Handler(tag: 2563, GET) sending length: 1925, 2006582799 +2013-08-27 01:13:59,410+0000 INFO ReadBuffer RB-LR-Handler(tag: 112, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,410+0000 INFO ReadBuffer RB-LR-Handler(tag: 112, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,410+0000 INFO LocalIOProvider LR-Handler(tag: 112, GET) rbuf: RB-LR-Handler(tag: 112, GET) +2013-08-27 01:13:59,410+0000 INFO GetFileHandler Handler(tag: 112, GET) unregistering (last) +2013-08-27 01:13:59,410+0000 INFO ReadBuffer RB-LR-Handler(tag: 112, GET) de-allocating 1 buffers +2013-08-27 01:13:59,410+0000 INFO GetFileHandler Handler(tag: 2563, GET) unregistering (last) +2013-08-27 01:13:59,410+0000 INFO RequestHandler Handler(tag: 113, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,410+0000 INFO RequestHandler Handler(tag: 114, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,410+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,410+0000 INFO RequestHandler Handler(tag: 3027, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,410+0000 INFO RequestHandler Handler(tag: 115, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,410+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,410+0000 INFO RequestHandler Handler(tag: 2564, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,411+0000 INFO RequestHandler Handler(tag: 116, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,411+0000 INFO GetFileHandler Handler(tag: 3028, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,411+0000 INFO GetFileHandler Handler(tag: 3028, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,411+0000 INFO GetFileHandler Handler(tag: 3028, GET) -> 117 +2013-08-27 01:13:59,411+0000 INFO GetFileHandler Handler(tag: 117, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,411+0000 INFO GetFileHandler Handler(tag: 2565, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,411+0000 INFO GetFileHandler Handler(tag: 2565, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,411+0000 INFO GetFileHandler Handler(tag: 117, GET) reader: LR-Handler(tag: 117, GET) +2013-08-27 01:13:59,411+0000 INFO GetFileHandler Handler(tag: 2565, GET) -> 118 +2013-08-27 01:13:59,411+0000 INFO GetFileHandler Handler(tag: 117, GET) sending length: 1925, 664712664 +2013-08-27 01:13:59,411+0000 INFO GetFileHandler Handler(tag: 3028, GET) sending length: 1925, 615812154 +2013-08-27 01:13:59,411+0000 INFO ReadBuffer RB-LR-Handler(tag: 117, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,411+0000 INFO ReadBuffer RB-LR-Handler(tag: 117, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,411+0000 INFO LocalIOProvider LR-Handler(tag: 117, GET) rbuf: RB-LR-Handler(tag: 117, GET) +2013-08-27 01:13:59,411+0000 INFO GetFileHandler Handler(tag: 117, GET) unregistering (last) +2013-08-27 01:13:59,411+0000 INFO GetFileHandler Handler(tag: 118, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,411+0000 INFO ReadBuffer RB-LR-Handler(tag: 117, GET) de-allocating 1 buffers +2013-08-27 01:13:59,411+0000 INFO GetFileHandler Handler(tag: 3028, GET) unregistering (last) +2013-08-27 01:13:59,411+0000 INFO GetFileHandler Handler(tag: 118, GET) reader: LR-Handler(tag: 118, GET) +2013-08-27 01:13:59,411+0000 INFO GetFileHandler Handler(tag: 118, GET) sending length: 1925, 1222518691 +2013-08-27 01:13:59,411+0000 INFO GetFileHandler Handler(tag: 2565, GET) sending length: 1925, 864373480 +2013-08-27 01:13:59,411+0000 INFO ReadBuffer RB-LR-Handler(tag: 118, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,411+0000 INFO ReadBuffer RB-LR-Handler(tag: 118, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,411+0000 INFO LocalIOProvider LR-Handler(tag: 118, GET) rbuf: RB-LR-Handler(tag: 118, GET) +2013-08-27 01:13:59,412+0000 INFO GetFileHandler Handler(tag: 118, GET) unregistering (last) +2013-08-27 01:13:59,412+0000 INFO ReadBuffer RB-LR-Handler(tag: 118, GET) de-allocating 1 buffers +2013-08-27 01:13:59,412+0000 INFO GetFileHandler Handler(tag: 2565, GET) unregistering (last) +2013-08-27 01:13:59,412+0000 INFO RequestHandler Handler(tag: 119, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,412+0000 INFO RequestHandler Handler(tag: 120, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,412+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,412+0000 INFO RequestHandler Handler(tag: 3029, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,412+0000 INFO RequestHandler Handler(tag: 121, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,412+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,412+0000 INFO RequestHandler Handler(tag: 2566, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,412+0000 INFO RequestHandler Handler(tag: 122, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,413+0000 INFO GetFileHandler Handler(tag: 3030, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,413+0000 INFO GetFileHandler Handler(tag: 3030, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,413+0000 INFO GetFileHandler Handler(tag: 3030, GET) -> 123 +2013-08-27 01:13:59,413+0000 INFO GetFileHandler Handler(tag: 123, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,413+0000 INFO GetFileHandler Handler(tag: 2567, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,413+0000 INFO GetFileHandler Handler(tag: 2567, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,413+0000 INFO GetFileHandler Handler(tag: 123, GET) reader: LR-Handler(tag: 123, GET) +2013-08-27 01:13:59,413+0000 INFO GetFileHandler Handler(tag: 2567, GET) -> 124 +2013-08-27 01:13:59,413+0000 INFO GetFileHandler Handler(tag: 123, GET) sending length: 1925, 200473361 +2013-08-27 01:13:59,413+0000 INFO ReadBuffer RB-LR-Handler(tag: 123, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,413+0000 INFO GetFileHandler Handler(tag: 3030, GET) sending length: 1925, 2101419831 +2013-08-27 01:13:59,413+0000 INFO ReadBuffer RB-LR-Handler(tag: 123, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,413+0000 INFO LocalIOProvider LR-Handler(tag: 123, GET) rbuf: RB-LR-Handler(tag: 123, GET) +2013-08-27 01:13:59,413+0000 INFO GetFileHandler Handler(tag: 123, GET) unregistering (last) +2013-08-27 01:13:59,413+0000 INFO GetFileHandler Handler(tag: 124, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,413+0000 INFO GetFileHandler Handler(tag: 3030, GET) unregistering (last) +2013-08-27 01:13:59,413+0000 INFO ReadBuffer RB-LR-Handler(tag: 123, GET) de-allocating 1 buffers +2013-08-27 01:13:59,413+0000 INFO GetFileHandler Handler(tag: 124, GET) reader: LR-Handler(tag: 124, GET) +2013-08-27 01:13:59,413+0000 INFO GetFileHandler Handler(tag: 124, GET) sending length: 1925, 1274071252 +2013-08-27 01:13:59,413+0000 INFO GetFileHandler Handler(tag: 2567, GET) sending length: 1925, 1861630750 +2013-08-27 01:13:59,413+0000 INFO ReadBuffer RB-LR-Handler(tag: 124, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,413+0000 INFO ReadBuffer RB-LR-Handler(tag: 124, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,413+0000 INFO LocalIOProvider LR-Handler(tag: 124, GET) rbuf: RB-LR-Handler(tag: 124, GET) +2013-08-27 01:13:59,413+0000 INFO GetFileHandler Handler(tag: 124, GET) unregistering (last) +2013-08-27 01:13:59,413+0000 INFO ReadBuffer RB-LR-Handler(tag: 124, GET) de-allocating 1 buffers +2013-08-27 01:13:59,413+0000 INFO GetFileHandler Handler(tag: 2567, GET) unregistering (last) +2013-08-27 01:13:59,413+0000 INFO RequestHandler Handler(tag: 125, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,414+0000 INFO RequestHandler Handler(tag: 126, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,414+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,414+0000 INFO RequestHandler Handler(tag: 3031, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,414+0000 INFO RequestHandler Handler(tag: 127, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,414+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,414+0000 INFO RequestHandler Handler(tag: 2568, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,414+0000 INFO RequestHandler Handler(tag: 128, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,414+0000 INFO GetFileHandler Handler(tag: 3032, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,414+0000 INFO GetFileHandler Handler(tag: 3032, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,414+0000 INFO GetFileHandler Handler(tag: 3032, GET) -> 129 +2013-08-27 01:13:59,415+0000 INFO GetFileHandler Handler(tag: 129, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,415+0000 INFO GetFileHandler Handler(tag: 2569, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,415+0000 INFO GetFileHandler Handler(tag: 2569, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,415+0000 INFO GetFileHandler Handler(tag: 129, GET) reader: LR-Handler(tag: 129, GET) +2013-08-27 01:13:59,415+0000 INFO GetFileHandler Handler(tag: 2569, GET) -> 130 +2013-08-27 01:13:59,415+0000 INFO GetFileHandler Handler(tag: 129, GET) sending length: 1925, 108063412 +2013-08-27 01:13:59,415+0000 INFO GetFileHandler Handler(tag: 3032, GET) sending length: 1925, 1598083769 +2013-08-27 01:13:59,415+0000 INFO ReadBuffer RB-LR-Handler(tag: 129, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,415+0000 INFO ReadBuffer RB-LR-Handler(tag: 129, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,415+0000 INFO LocalIOProvider LR-Handler(tag: 129, GET) rbuf: RB-LR-Handler(tag: 129, GET) +2013-08-27 01:13:59,415+0000 INFO GetFileHandler Handler(tag: 129, GET) unregistering (last) +2013-08-27 01:13:59,415+0000 INFO GetFileHandler Handler(tag: 130, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,415+0000 INFO ReadBuffer RB-LR-Handler(tag: 129, GET) de-allocating 1 buffers +2013-08-27 01:13:59,415+0000 INFO GetFileHandler Handler(tag: 3032, GET) unregistering (last) +2013-08-27 01:13:59,415+0000 INFO GetFileHandler Handler(tag: 130, GET) reader: LR-Handler(tag: 130, GET) +2013-08-27 01:13:59,415+0000 INFO GetFileHandler Handler(tag: 130, GET) sending length: 1925, 803246987 +2013-08-27 01:13:59,415+0000 INFO GetFileHandler Handler(tag: 2569, GET) sending length: 1925, 889755445 +2013-08-27 01:13:59,415+0000 INFO ReadBuffer RB-LR-Handler(tag: 130, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,415+0000 INFO ReadBuffer RB-LR-Handler(tag: 130, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,415+0000 INFO LocalIOProvider LR-Handler(tag: 130, GET) rbuf: RB-LR-Handler(tag: 130, GET) +2013-08-27 01:13:59,415+0000 INFO GetFileHandler Handler(tag: 130, GET) unregistering (last) +2013-08-27 01:13:59,415+0000 INFO ReadBuffer RB-LR-Handler(tag: 130, GET) de-allocating 1 buffers +2013-08-27 01:13:59,415+0000 INFO GetFileHandler Handler(tag: 2569, GET) unregistering (last) +2013-08-27 01:13:59,415+0000 INFO GetFileHandler Handler(tag: 2570, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,415+0000 INFO RequestHandler Handler(tag: 131, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,415+0000 INFO GetFileHandler Handler(tag: 2570, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,415+0000 INFO GetFileHandler Handler(tag: 2570, GET) -> 132 +2013-08-27 01:13:59,416+0000 INFO GetFileHandler Handler(tag: 132, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,416+0000 INFO GetFileHandler Handler(tag: 132, GET) reader: LR-Handler(tag: 132, GET) +2013-08-27 01:13:59,416+0000 INFO GetFileHandler Handler(tag: 132, GET) sending length: 14799449, 1215840334 +2013-08-27 01:13:59,416+0000 INFO ReadBuffer RB-LR-Handler(tag: 132, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,416+0000 INFO GetFileHandler Handler(tag: 2570, GET) sending length: 14799449, 1321592333 +2013-08-27 01:13:59,416+0000 INFO ReadBuffer RB-LR-Handler(tag: 132, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,416+0000 INFO LocalIOProvider LR-Handler(tag: 132, GET) rbuf: RB-LR-Handler(tag: 132, GET) +2013-08-27 01:13:59,416+0000 INFO GetFileHandler Handler(tag: 2571, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,416+0000 INFO GetFileHandler Handler(tag: 2571, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,416+0000 INFO GetFileHandler Handler(tag: 2571, GET) -> 133 +2013-08-27 01:13:59,416+0000 INFO GetFileHandler Handler(tag: 133, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,416+0000 INFO GetFileHandler Handler(tag: 133, GET) reader: LR-Handler(tag: 133, GET) +2013-08-27 01:13:59,416+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:13:59,416+0000 INFO GetFileHandler Handler(tag: 133, GET) sending length: 14799449, 2115195389 +2013-08-27 01:13:59,416+0000 INFO ReadBuffer RB-LR-Handler(tag: 133, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,416+0000 INFO RequestHandler Handler(tag: 3033, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,416+0000 INFO GetFileHandler Handler(tag: 2571, GET) sending length: 14799449, 2060905927 +2013-08-27 01:13:59,416+0000 INFO ReadBuffer RB-LR-Handler(tag: 133, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,416+0000 INFO LocalIOProvider LR-Handler(tag: 133, GET) rbuf: RB-LR-Handler(tag: 133, GET) +2013-08-27 01:13:59,416+0000 INFO RequestHandler Handler(tag: 134, JOBSTATUS) unregistering (send) +2013-08-27 01:13:59,416+0000 INFO GetFileHandler Handler(tag: 2572, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,416+0000 INFO GetFileHandler Handler(tag: 2572, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 2572, GET) -> 135 +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 135, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 3034, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 135, GET) reader: LR-Handler(tag: 135, GET) +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 135, GET) sending length: 14799449, 837249672 +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 3034, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,417+0000 INFO ReadBuffer RB-LR-Handler(tag: 135, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 2572, GET) sending length: 14799449, 1342382160 +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 3034, GET) -> 136 +2013-08-27 01:13:59,417+0000 INFO ReadBuffer RB-LR-Handler(tag: 135, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,417+0000 INFO LocalIOProvider LR-Handler(tag: 135, GET) rbuf: RB-LR-Handler(tag: 135, GET) +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 136, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 136, GET) reader: LR-Handler(tag: 136, GET) +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 136, GET) sending length: 1925, 363452780 +2013-08-27 01:13:59,417+0000 INFO ReadBuffer RB-LR-Handler(tag: 136, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 3034, GET) sending length: 1925, 1665770442 +2013-08-27 01:13:59,417+0000 INFO ReadBuffer RB-LR-Handler(tag: 136, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:13:59,417+0000 INFO LocalIOProvider LR-Handler(tag: 136, GET) rbuf: RB-LR-Handler(tag: 136, GET) +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 2573, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 2573, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 2573, GET) -> 137 +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 137, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 3035, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 137, GET) reader: LR-Handler(tag: 137, GET) +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 3035, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 137, GET) sending length: 14799449, 1062884985 +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 3035, GET) -> 138 +2013-08-27 01:13:59,417+0000 INFO ReadBuffer RB-LR-Handler(tag: 137, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,417+0000 INFO ReadBuffer RB-LR-Handler(tag: 137, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,417+0000 INFO LocalIOProvider LR-Handler(tag: 137, GET) rbuf: RB-LR-Handler(tag: 137, GET) +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 2573, GET) sending length: 14799449, 2099127532 +2013-08-27 01:13:59,417+0000 INFO GetFileHandler Handler(tag: 138, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,418+0000 INFO GetFileHandler Handler(tag: 138, GET) reader: LR-Handler(tag: 138, GET) +2013-08-27 01:13:59,418+0000 INFO GetFileHandler Handler(tag: 138, GET) sending length: 14799449, 871046072 +2013-08-27 01:13:59,418+0000 INFO ReadBuffer RB-LR-Handler(tag: 138, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,418+0000 INFO ReadBuffer RB-LR-Handler(tag: 138, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,418+0000 INFO LocalIOProvider LR-Handler(tag: 138, GET) rbuf: RB-LR-Handler(tag: 138, GET) +2013-08-27 01:13:59,418+0000 INFO GetFileHandler Handler(tag: 2574, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,418+0000 INFO GetFileHandler Handler(tag: 3035, GET) sending length: 14799449, 1463881897 +2013-08-27 01:13:59,418+0000 INFO GetFileHandler Handler(tag: 2574, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,418+0000 INFO GetFileHandler Handler(tag: 2574, GET) -> 139 +2013-08-27 01:13:59,418+0000 INFO GetFileHandler Handler(tag: 139, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,418+0000 INFO GetFileHandler Handler(tag: 3036, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,418+0000 INFO GetFileHandler Handler(tag: 139, GET) reader: LR-Handler(tag: 139, GET) +2013-08-27 01:13:59,418+0000 INFO GetFileHandler Handler(tag: 3036, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,418+0000 INFO GetFileHandler Handler(tag: 139, GET) sending length: 14799449, 1791435811 +2013-08-27 01:13:59,418+0000 INFO GetFileHandler Handler(tag: 3036, GET) -> 140 +2013-08-27 01:13:59,418+0000 INFO ReadBuffer RB-LR-Handler(tag: 139, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,418+0000 INFO ReadBuffer RB-LR-Handler(tag: 139, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,418+0000 INFO GetFileHandler Handler(tag: 136, GET) unregistering (last) +2013-08-27 01:13:59,418+0000 INFO LocalIOProvider LR-Handler(tag: 139, GET) rbuf: RB-LR-Handler(tag: 139, GET) +2013-08-27 01:13:59,418+0000 INFO ReadBuffer RB-LR-Handler(tag: 136, GET) de-allocating 1 buffers +2013-08-27 01:13:59,418+0000 INFO GetFileHandler Handler(tag: 2574, GET) sending length: 14799449, 162554077 +2013-08-27 01:13:59,418+0000 INFO GetFileHandler Handler(tag: 140, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,418+0000 INFO GetFileHandler Handler(tag: 140, GET) reader: LR-Handler(tag: 140, GET) +2013-08-27 01:13:59,418+0000 INFO GetFileHandler Handler(tag: 3034, GET) unregistering (last) +2013-08-27 01:13:59,418+0000 INFO GetFileHandler Handler(tag: 140, GET) sending length: 14799449, 1145414168 +2013-08-27 01:13:59,419+0000 INFO ReadBuffer RB-LR-Handler(tag: 140, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 2575, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,419+0000 INFO ReadBuffer RB-LR-Handler(tag: 140, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 3036, GET) sending length: 14799449, 984397737 +2013-08-27 01:13:59,419+0000 INFO LocalIOProvider LR-Handler(tag: 140, GET) rbuf: RB-LR-Handler(tag: 140, GET) +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 2575, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 2575, GET) -> 141 +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 141, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 141, GET) reader: LR-Handler(tag: 141, GET) +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 3037, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 141, GET) sending length: 14799449, 30749609 +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 3037, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 2575, GET) sending length: 14799449, 481990858 +2013-08-27 01:13:59,419+0000 INFO ReadBuffer RB-LR-Handler(tag: 141, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 3037, GET) -> 142 +2013-08-27 01:13:59,419+0000 INFO ReadBuffer RB-LR-Handler(tag: 141, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,419+0000 INFO LocalIOProvider LR-Handler(tag: 141, GET) rbuf: RB-LR-Handler(tag: 141, GET) +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 142, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 142, GET) reader: LR-Handler(tag: 142, GET) +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 142, GET) sending length: 14799449, 787153525 +2013-08-27 01:13:59,419+0000 INFO ReadBuffer RB-LR-Handler(tag: 142, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 3037, GET) sending length: 14799449, 1304803574 +2013-08-27 01:13:59,419+0000 INFO ReadBuffer RB-LR-Handler(tag: 142, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,419+0000 INFO LocalIOProvider LR-Handler(tag: 142, GET) rbuf: RB-LR-Handler(tag: 142, GET) +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 2576, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 2576, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 2576, GET) -> 143 +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 143, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 3038, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,419+0000 INFO GetFileHandler Handler(tag: 143, GET) reader: LR-Handler(tag: 143, GET) +2013-08-27 01:13:59,420+0000 INFO GetFileHandler Handler(tag: 3038, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,420+0000 INFO GetFileHandler Handler(tag: 143, GET) sending length: 14799449, 183090454 +2013-08-27 01:13:59,420+0000 INFO ReadBuffer RB-LR-Handler(tag: 143, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,420+0000 INFO GetFileHandler Handler(tag: 3038, GET) -> 144 +2013-08-27 01:13:59,420+0000 INFO ReadBuffer RB-LR-Handler(tag: 143, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,420+0000 INFO LocalIOProvider LR-Handler(tag: 143, GET) rbuf: RB-LR-Handler(tag: 143, GET) +2013-08-27 01:13:59,420+0000 INFO GetFileHandler Handler(tag: 2576, GET) sending length: 14799449, 1787309096 +2013-08-27 01:13:59,420+0000 INFO GetFileHandler Handler(tag: 144, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,420+0000 INFO GetFileHandler Handler(tag: 144, GET) reader: LR-Handler(tag: 144, GET) +2013-08-27 01:13:59,420+0000 INFO GetFileHandler Handler(tag: 144, GET) sending length: 14799449, 741297553 +2013-08-27 01:13:59,420+0000 INFO GetFileHandler Handler(tag: 3038, GET) sending length: 14799449, 1435337024 +2013-08-27 01:13:59,420+0000 INFO ReadBuffer RB-LR-Handler(tag: 144, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,420+0000 INFO ReadBuffer RB-LR-Handler(tag: 144, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,420+0000 INFO GetFileHandler Handler(tag: 2577, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,420+0000 INFO LocalIOProvider LR-Handler(tag: 144, GET) rbuf: RB-LR-Handler(tag: 144, GET) +2013-08-27 01:13:59,420+0000 INFO GetFileHandler Handler(tag: 2577, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,420+0000 INFO GetFileHandler Handler(tag: 2577, GET) -> 145 +2013-08-27 01:13:59,420+0000 INFO GetFileHandler Handler(tag: 145, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,420+0000 INFO GetFileHandler Handler(tag: 3039, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,420+0000 INFO GetFileHandler Handler(tag: 145, GET) reader: LR-Handler(tag: 145, GET) +2013-08-27 01:13:59,420+0000 INFO GetFileHandler Handler(tag: 3039, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,420+0000 INFO GetFileHandler Handler(tag: 145, GET) sending length: 14799449, 809504097 +2013-08-27 01:13:59,420+0000 INFO GetFileHandler Handler(tag: 3039, GET) -> 146 +2013-08-27 01:13:59,420+0000 INFO ReadBuffer RB-LR-Handler(tag: 145, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,420+0000 INFO GetFileHandler Handler(tag: 2577, GET) sending length: 14799449, 1026454534 +2013-08-27 01:13:59,420+0000 INFO ReadBuffer RB-LR-Handler(tag: 145, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,420+0000 INFO LocalIOProvider LR-Handler(tag: 145, GET) rbuf: RB-LR-Handler(tag: 145, GET) +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 146, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 146, GET) reader: LR-Handler(tag: 146, GET) +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 146, GET) sending length: 14799449, 1218523345 +2013-08-27 01:13:59,421+0000 INFO ReadBuffer RB-LR-Handler(tag: 146, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 3039, GET) sending length: 14799449, 1293026250 +2013-08-27 01:13:59,421+0000 INFO ReadBuffer RB-LR-Handler(tag: 146, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 2578, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,421+0000 INFO LocalIOProvider LR-Handler(tag: 146, GET) rbuf: RB-LR-Handler(tag: 146, GET) +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 2578, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 2578, GET) -> 147 +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 147, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 3040, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 147, GET) reader: LR-Handler(tag: 147, GET) +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 147, GET) sending length: 14799449, 1505159757 +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 3040, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,421+0000 INFO ReadBuffer RB-LR-Handler(tag: 147, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 3040, GET) -> 148 +2013-08-27 01:13:59,421+0000 INFO ReadBuffer RB-LR-Handler(tag: 147, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 2578, GET) sending length: 14799449, 510855398 +2013-08-27 01:13:59,421+0000 INFO LocalIOProvider LR-Handler(tag: 147, GET) rbuf: RB-LR-Handler(tag: 147, GET) +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 148, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 148, GET) reader: LR-Handler(tag: 148, GET) +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 148, GET) sending length: 14799449, 244634619 +2013-08-27 01:13:59,421+0000 INFO ReadBuffer RB-LR-Handler(tag: 148, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 2579, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,421+0000 INFO ReadBuffer RB-LR-Handler(tag: 148, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 3040, GET) sending length: 14799449, 1474260819 +2013-08-27 01:13:59,421+0000 INFO LocalIOProvider LR-Handler(tag: 148, GET) rbuf: RB-LR-Handler(tag: 148, GET) +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 2579, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 2579, GET) -> 149 +2013-08-27 01:13:59,421+0000 INFO GetFileHandler Handler(tag: 149, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 3041, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 149, GET) reader: LR-Handler(tag: 149, GET) +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 3041, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 149, GET) sending length: 14799449, 235265847 +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 3041, GET) -> 150 +2013-08-27 01:13:59,422+0000 INFO ReadBuffer RB-LR-Handler(tag: 149, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 2579, GET) sending length: 14799449, 300666100 +2013-08-27 01:13:59,422+0000 INFO ReadBuffer RB-LR-Handler(tag: 149, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,422+0000 INFO LocalIOProvider LR-Handler(tag: 149, GET) rbuf: RB-LR-Handler(tag: 149, GET) +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 150, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 150, GET) reader: LR-Handler(tag: 150, GET) +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 150, GET) sending length: 14799449, 266121309 +2013-08-27 01:13:59,422+0000 INFO ReadBuffer RB-LR-Handler(tag: 150, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 2580, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,422+0000 INFO ReadBuffer RB-LR-Handler(tag: 150, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 3041, GET) sending length: 14799449, 1315205412 +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 2580, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,422+0000 INFO LocalIOProvider LR-Handler(tag: 150, GET) rbuf: RB-LR-Handler(tag: 150, GET) +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 2580, GET) -> 151 +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 151, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 3042, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 151, GET) reader: LR-Handler(tag: 151, GET) +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 3042, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 151, GET) sending length: 14799449, 608180913 +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 3042, GET) -> 152 +2013-08-27 01:13:59,422+0000 INFO ReadBuffer RB-LR-Handler(tag: 151, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,422+0000 INFO ReadBuffer RB-LR-Handler(tag: 151, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 2580, GET) sending length: 14799449, 186640853 +2013-08-27 01:13:59,422+0000 INFO LocalIOProvider LR-Handler(tag: 151, GET) rbuf: RB-LR-Handler(tag: 151, GET) +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 152, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 152, GET) reader: LR-Handler(tag: 152, GET) +2013-08-27 01:13:59,422+0000 INFO GetFileHandler Handler(tag: 152, GET) sending length: 14799449, 1546691751 +2013-08-27 01:13:59,423+0000 INFO ReadBuffer RB-LR-Handler(tag: 152, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 2581, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,423+0000 INFO ReadBuffer RB-LR-Handler(tag: 152, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,423+0000 INFO LocalIOProvider LR-Handler(tag: 152, GET) rbuf: RB-LR-Handler(tag: 152, GET) +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 3042, GET) sending length: 14799449, 1376667533 +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 2581, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 2581, GET) -> 153 +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 153, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 3043, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 153, GET) reader: LR-Handler(tag: 153, GET) +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 153, GET) sending length: 14799449, 642804823 +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 3043, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,423+0000 INFO ReadBuffer RB-LR-Handler(tag: 153, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 3043, GET) -> 154 +2013-08-27 01:13:59,423+0000 INFO ReadBuffer RB-LR-Handler(tag: 153, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 2581, GET) sending length: 14799449, 1342562699 +2013-08-27 01:13:59,423+0000 INFO LocalIOProvider LR-Handler(tag: 153, GET) rbuf: RB-LR-Handler(tag: 153, GET) +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 154, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 154, GET) reader: LR-Handler(tag: 154, GET) +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 154, GET) sending length: 14799449, 840603064 +2013-08-27 01:13:59,423+0000 INFO ReadBuffer RB-LR-Handler(tag: 154, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,423+0000 INFO ReadBuffer RB-LR-Handler(tag: 154, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,423+0000 INFO LocalIOProvider LR-Handler(tag: 154, GET) rbuf: RB-LR-Handler(tag: 154, GET) +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 2582, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 3043, GET) sending length: 14799449, 1599721587 +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 2582, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 2582, GET) -> 155 +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 155, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 3044, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 155, GET) reader: LR-Handler(tag: 155, GET) +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 3044, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 155, GET) sending length: 14799449, 427039330 +2013-08-27 01:13:59,423+0000 INFO GetFileHandler Handler(tag: 3044, GET) -> 156 +2013-08-27 01:13:59,423+0000 INFO ReadBuffer RB-LR-Handler(tag: 155, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,423+0000 INFO ReadBuffer RB-LR-Handler(tag: 155, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,423+0000 INFO LocalIOProvider LR-Handler(tag: 155, GET) rbuf: RB-LR-Handler(tag: 155, GET) +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 156, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 2582, GET) sending length: 14799449, 1972119394 +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 156, GET) reader: LR-Handler(tag: 156, GET) +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 156, GET) sending length: 14799449, 1148047160 +2013-08-27 01:13:59,424+0000 INFO ReadBuffer RB-LR-Handler(tag: 156, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,424+0000 INFO ReadBuffer RB-LR-Handler(tag: 156, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 2583, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,424+0000 INFO LocalIOProvider LR-Handler(tag: 156, GET) rbuf: RB-LR-Handler(tag: 156, GET) +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 2583, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 3044, GET) sending length: 14799449, 487248712 +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 2583, GET) -> 157 +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 157, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 3045, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 157, GET) reader: LR-Handler(tag: 157, GET) +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 3045, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 157, GET) sending length: 14799449, 1829842089 +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 3045, GET) -> 158 +2013-08-27 01:13:59,424+0000 INFO ReadBuffer RB-LR-Handler(tag: 157, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,424+0000 INFO ReadBuffer RB-LR-Handler(tag: 157, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,424+0000 INFO LocalIOProvider LR-Handler(tag: 157, GET) rbuf: RB-LR-Handler(tag: 157, GET) +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 158, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 2583, GET) sending length: 14799449, 82314654 +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 158, GET) reader: LR-Handler(tag: 158, GET) +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 158, GET) sending length: 14799449, 482921110 +2013-08-27 01:13:59,424+0000 INFO ReadBuffer RB-LR-Handler(tag: 158, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,424+0000 INFO ReadBuffer RB-LR-Handler(tag: 158, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 2584, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,424+0000 INFO LocalIOProvider LR-Handler(tag: 158, GET) rbuf: RB-LR-Handler(tag: 158, GET) +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 2584, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 2584, GET) -> 159 +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 159, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,424+0000 INFO GetFileHandler Handler(tag: 3045, GET) sending length: 14799449, 1410988412 +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 3046, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 159, GET) reader: LR-Handler(tag: 159, GET) +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 3046, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 159, GET) sending length: 14799449, 1967810310 +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 3046, GET) -> 160 +2013-08-27 01:13:59,425+0000 INFO ReadBuffer RB-LR-Handler(tag: 159, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,425+0000 INFO ReadBuffer RB-LR-Handler(tag: 159, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,425+0000 INFO LocalIOProvider LR-Handler(tag: 159, GET) rbuf: RB-LR-Handler(tag: 159, GET) +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 160, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 2584, GET) sending length: 14799449, 657684509 +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 160, GET) reader: LR-Handler(tag: 160, GET) +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 160, GET) sending length: 14799449, 605211654 +2013-08-27 01:13:59,425+0000 INFO ReadBuffer RB-LR-Handler(tag: 160, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 2585, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,425+0000 INFO ReadBuffer RB-LR-Handler(tag: 160, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,425+0000 INFO LocalIOProvider LR-Handler(tag: 160, GET) rbuf: RB-LR-Handler(tag: 160, GET) +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 2585, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 2585, GET) -> 161 +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 161, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 3046, GET) sending length: 14799449, 699279152 +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 3047, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 161, GET) reader: LR-Handler(tag: 161, GET) +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 3047, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 161, GET) sending length: 14799449, 1754191280 +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 3047, GET) -> 162 +2013-08-27 01:13:59,425+0000 INFO ReadBuffer RB-LR-Handler(tag: 161, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,425+0000 INFO ReadBuffer RB-LR-Handler(tag: 161, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,425+0000 INFO LocalIOProvider LR-Handler(tag: 161, GET) rbuf: RB-LR-Handler(tag: 161, GET) +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 162, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 162, GET) reader: LR-Handler(tag: 162, GET) +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 2585, GET) sending length: 14799449, 678857691 +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 162, GET) sending length: 14799449, 2128079773 +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 3048, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,425+0000 INFO ReadBuffer RB-LR-Handler(tag: 162, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 3048, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,425+0000 INFO ReadBuffer RB-LR-Handler(tag: 162, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,425+0000 INFO LocalIOProvider LR-Handler(tag: 162, GET) rbuf: RB-LR-Handler(tag: 162, GET) +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 3048, GET) -> 163 +2013-08-27 01:13:59,425+0000 INFO GetFileHandler Handler(tag: 163, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,426+0000 INFO GetFileHandler Handler(tag: 163, GET) reader: LR-Handler(tag: 163, GET) +2013-08-27 01:13:59,426+0000 INFO GetFileHandler Handler(tag: 163, GET) sending length: 14799449, 714320295 +2013-08-27 01:13:59,426+0000 INFO GetFileHandler Handler(tag: 3049, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,426+0000 INFO GetFileHandler Handler(tag: 3047, GET) sending length: 14799449, 1147611335 +2013-08-27 01:13:59,427+0000 INFO ReadBuffer RB-LR-Handler(tag: 163, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,427+0000 INFO GetFileHandler Handler(tag: 3049, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,427+0000 INFO ReadBuffer RB-LR-Handler(tag: 163, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,427+0000 INFO LocalIOProvider LR-Handler(tag: 163, GET) rbuf: RB-LR-Handler(tag: 163, GET) +2013-08-27 01:13:59,427+0000 INFO GetFileHandler Handler(tag: 3049, GET) -> 164 +2013-08-27 01:13:59,427+0000 INFO GetFileHandler Handler(tag: 164, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,428+0000 INFO GetFileHandler Handler(tag: 164, GET) reader: LR-Handler(tag: 164, GET) +2013-08-27 01:13:59,428+0000 INFO GetFileHandler Handler(tag: 164, GET) sending length: 14799449, 1225872710 +2013-08-27 01:13:59,428+0000 INFO ReadBuffer RB-LR-Handler(tag: 164, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,428+0000 INFO GetFileHandler Handler(tag: 3050, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,428+0000 INFO ReadBuffer RB-LR-Handler(tag: 164, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,428+0000 INFO LocalIOProvider LR-Handler(tag: 164, GET) rbuf: RB-LR-Handler(tag: 164, GET) +2013-08-27 01:13:59,428+0000 INFO GetFileHandler Handler(tag: 3050, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,428+0000 INFO GetFileHandler Handler(tag: 3050, GET) -> 165 +2013-08-27 01:13:59,428+0000 INFO GetFileHandler Handler(tag: 165, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:13:59,428+0000 INFO GetFileHandler Handler(tag: 165, GET) reader: LR-Handler(tag: 165, GET) +2013-08-27 01:13:59,428+0000 INFO GetFileHandler Handler(tag: 165, GET) sending length: 14799449, 1757648942 +2013-08-27 01:13:59,428+0000 INFO ReadBuffer RB-LR-Handler(tag: 165, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:13:59,428+0000 INFO ReadBuffer RB-LR-Handler(tag: 165, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:13:59,428+0000 INFO LocalIOProvider LR-Handler(tag: 165, GET) rbuf: RB-LR-Handler(tag: 165, GET) +2013-08-27 01:13:59,429+0000 INFO GetFileHandler Handler(tag: 3048, GET) sending length: 14799449, 364561223 +2013-08-27 01:13:59,429+0000 INFO GetFileHandler Handler(tag: 3049, GET) sending length: 14799449, 409630070 +2013-08-27 01:13:59,430+0000 INFO GetFileHandler Handler(tag: 3050, GET) sending length: 14799449, 783252479 +2013-08-27 01:13:59,880+0000 INFO ThrottleManager O maxBuffers=1024, crtBuffers=1023, allowedTransfers=0, active=0, suspended=0 +2013-08-27 01:13:59,881+0000 INFO ThrottleManager mem=109.09 MB, heap=361.69 MB, maxHeap=910.25 MB +2013-08-27 01:13:59,881+0000 INFO ThrottleManager I maxBuffers=1024, crtBuffers=256, allowedTransfers=94, active=0, suspended=0 +2013-08-27 01:14:00,008+0000 INFO RuntimeStats$ProgressTicker Selecting site:1 Stage in:32 +2013-08-27 01:14:00,380+0000 INFO ThrottleManager O maxBuffers=1024, crtBuffers=1023, allowedTransfers=0, active=0, suspended=0 +2013-08-27 01:14:00,380+0000 INFO ThrottleManager mem=105.72 MB, heap=361.69 MB, maxHeap=910.25 MB +2013-08-27 01:14:00,381+0000 INFO ThrottleManager I maxBuffers=1024, crtBuffers=256, allowedTransfers=94, active=0, suspended=0 +2013-08-27 01:14:00,880+0000 INFO ThrottleManager O maxBuffers=1024, crtBuffers=1023, allowedTransfers=0, active=0, suspended=0 +2013-08-27 01:14:00,880+0000 INFO ThrottleManager mem=97.68 MB, heap=361.69 MB, maxHeap=910.25 MB +2013-08-27 01:14:00,881+0000 INFO ThrottleManager I maxBuffers=1024, crtBuffers=256, allowedTransfers=94, active=0, suspended=0 +2013-08-27 01:14:01,009+0000 INFO RuntimeStats$ProgressTicker Selecting site:1 Stage in:32 +2013-08-27 01:14:01,380+0000 INFO ThrottleManager O maxBuffers=1024, crtBuffers=1023, allowedTransfers=0, active=0, suspended=0 +2013-08-27 01:14:01,380+0000 INFO ThrottleManager mem=152.99 MB, heap=361.69 MB, maxHeap=910.25 MB +2013-08-27 01:14:01,381+0000 INFO ThrottleManager I maxBuffers=1024, crtBuffers=256, allowedTransfers=94, active=0, suspended=0 +2013-08-27 01:14:01,880+0000 INFO ThrottleManager O maxBuffers=1024, crtBuffers=1023, allowedTransfers=0, active=0, suspended=0 +2013-08-27 01:14:01,880+0000 INFO ThrottleManager mem=138.58 MB, heap=359.38 MB, maxHeap=910.25 MB +2013-08-27 01:14:01,881+0000 INFO ThrottleManager I maxBuffers=1024, crtBuffers=256, allowedTransfers=94, active=0, suspended=0 +2013-08-27 01:14:02,009+0000 INFO RuntimeStats$ProgressTicker Selecting site:1 Stage in:32 +2013-08-27 01:14:02,380+0000 INFO ThrottleManager O maxBuffers=1024, crtBuffers=1023, allowedTransfers=0, active=0, suspended=0 +2013-08-27 01:14:02,380+0000 INFO ThrottleManager mem=197.81 MB, heap=359.38 MB, maxHeap=910.25 MB +2013-08-27 01:14:02,381+0000 INFO ThrottleManager I maxBuffers=1024, crtBuffers=256, allowedTransfers=94, active=0, suspended=0 +2013-08-27 01:14:02,501+0000 INFO Block Block task status changed: Active +2013-08-27 01:14:02,501+0000 INFO Block Block task status changed: Active +2013-08-27 01:14:02,501+0000 INFO RemoteLogHandler BLOCK_ACTIVE id=0827-1301520-000000 +2013-08-27 01:14:02,501+0000 INFO RequestHandler Handler(tag: 166, RLOG) unregistering (send) +2013-08-27 01:14:02,501+0000 INFO RemoteLogHandler BLOCK_ACTIVE id=0827-1301520-000001 +2013-08-27 01:14:02,501+0000 INFO RequestHandler Handler(tag: 167, RLOG) unregistering (send) +2013-08-27 01:14:02,502+0000 INFO AbstractQueuePoller Actively monitored: 2, New: 0, Done: 0 +2013-08-27 01:14:02,635+0000 INFO GetFileHandler Handler(tag: 132, GET) unregistering (last) +2013-08-27 01:14:02,635+0000 INFO ReadBuffer RB-LR-Handler(tag: 132, GET) de-allocating 8 buffers +2013-08-27 01:14:02,707+0000 INFO GetFileHandler Handler(tag: 2570, GET) unregistering (last) +2013-08-27 01:14:02,733+0000 INFO GetFileHandler Handler(tag: 133, GET) unregistering (last) +2013-08-27 01:14:02,733+0000 INFO ReadBuffer RB-LR-Handler(tag: 133, GET) de-allocating 8 buffers +2013-08-27 01:14:02,798+0000 INFO GetFileHandler Handler(tag: 2571, GET) unregistering (last) +2013-08-27 01:14:02,815+0000 INFO GetFileHandler Handler(tag: 135, GET) unregistering (last) +2013-08-27 01:14:02,815+0000 INFO ReadBuffer RB-LR-Handler(tag: 135, GET) de-allocating 8 buffers +2013-08-27 01:14:02,856+0000 INFO GetFileHandler Handler(tag: 137, GET) unregistering (last) +2013-08-27 01:14:02,856+0000 INFO ReadBuffer RB-LR-Handler(tag: 137, GET) de-allocating 8 buffers +2013-08-27 01:14:02,876+0000 INFO GetFileHandler Handler(tag: 138, GET) unregistering (last) +2013-08-27 01:14:02,876+0000 INFO ReadBuffer RB-LR-Handler(tag: 138, GET) de-allocating 8 buffers +2013-08-27 01:14:02,880+0000 INFO ThrottleManager O maxBuffers=1024, crtBuffers=1023, allowedTransfers=0, active=0, suspended=0 +2013-08-27 01:14:02,880+0000 INFO ThrottleManager mem=191.87 MB, heap=399.94 MB, maxHeap=910.25 MB +2013-08-27 01:14:02,881+0000 INFO ThrottleManager I maxBuffers=1024, crtBuffers=216, allowedTransfers=115, active=0, suspended=0 +2013-08-27 01:14:02,881+0000 INFO GetFileHandler Handler(tag: 2572, GET) unregistering (last) +2013-08-27 01:14:02,894+0000 INFO GetFileHandler Handler(tag: 139, GET) unregistering (last) +2013-08-27 01:14:02,894+0000 INFO ReadBuffer RB-LR-Handler(tag: 139, GET) de-allocating 8 buffers +2013-08-27 01:14:02,905+0000 INFO GetFileHandler Handler(tag: 140, GET) unregistering (last) +2013-08-27 01:14:02,905+0000 INFO ReadBuffer RB-LR-Handler(tag: 140, GET) de-allocating 8 buffers +2013-08-27 01:14:02,912+0000 INFO GetFileHandler Handler(tag: 141, GET) unregistering (last) +2013-08-27 01:14:02,912+0000 INFO ReadBuffer RB-LR-Handler(tag: 141, GET) de-allocating 8 buffers +2013-08-27 01:14:02,921+0000 INFO GetFileHandler Handler(tag: 2573, GET) unregistering (last) +2013-08-27 01:14:02,923+0000 INFO GetFileHandler Handler(tag: 142, GET) unregistering (last) +2013-08-27 01:14:02,923+0000 INFO ReadBuffer RB-LR-Handler(tag: 142, GET) de-allocating 8 buffers +2013-08-27 01:14:02,931+0000 INFO GetFileHandler Handler(tag: 143, GET) unregistering (last) +2013-08-27 01:14:02,931+0000 INFO ReadBuffer RB-LR-Handler(tag: 143, GET) de-allocating 8 buffers +2013-08-27 01:14:02,938+0000 INFO GetFileHandler Handler(tag: 3035, GET) unregistering (last) +2013-08-27 01:14:02,939+0000 INFO GetFileHandler Handler(tag: 144, GET) unregistering (last) +2013-08-27 01:14:02,939+0000 INFO ReadBuffer RB-LR-Handler(tag: 144, GET) de-allocating 8 buffers +2013-08-27 01:14:02,946+0000 INFO GetFileHandler Handler(tag: 3051, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:02,946+0000 INFO GetFileHandler Handler(tag: 3051, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:02,946+0000 INFO GetFileHandler Handler(tag: 3051, GET) -> 168 +2013-08-27 01:14:02,946+0000 INFO GetFileHandler Handler(tag: 168, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:02,947+0000 INFO GetFileHandler Handler(tag: 168, GET) reader: LR-Handler(tag: 168, GET) +2013-08-27 01:14:02,947+0000 INFO GetFileHandler Handler(tag: 168, GET) sending length: 148937, 161475341 +2013-08-27 01:14:02,947+0000 INFO ReadBuffer RB-LR-Handler(tag: 168, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:02,947+0000 INFO ReadBuffer RB-LR-Handler(tag: 168, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:02,947+0000 INFO LocalIOProvider LR-Handler(tag: 168, GET) rbuf: RB-LR-Handler(tag: 168, GET) +2013-08-27 01:14:02,947+0000 INFO GetFileHandler Handler(tag: 168, GET) unregistering (last) +2013-08-27 01:14:02,947+0000 INFO ReadBuffer RB-LR-Handler(tag: 168, GET) de-allocating 5 buffers +2013-08-27 01:14:02,949+0000 INFO GetFileHandler Handler(tag: 145, GET) unregistering (last) +2013-08-27 01:14:02,949+0000 INFO ReadBuffer RB-LR-Handler(tag: 145, GET) de-allocating 8 buffers +2013-08-27 01:14:02,949+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:02,953+0000 INFO GetFileHandler Handler(tag: 2574, GET) unregistering (last) +2013-08-27 01:14:02,959+0000 INFO GetFileHandler Handler(tag: 146, GET) unregistering (last) +2013-08-27 01:14:02,959+0000 INFO ReadBuffer RB-LR-Handler(tag: 146, GET) de-allocating 8 buffers +2013-08-27 01:14:02,961+0000 INFO GetFileHandler Handler(tag: 147, GET) unregistering (last) +2013-08-27 01:14:02,961+0000 INFO ReadBuffer RB-LR-Handler(tag: 147, GET) de-allocating 8 buffers +2013-08-27 01:14:02,964+0000 INFO GetFileHandler Handler(tag: 148, GET) unregistering (last) +2013-08-27 01:14:02,964+0000 INFO ReadBuffer RB-LR-Handler(tag: 148, GET) de-allocating 8 buffers +2013-08-27 01:14:02,964+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:02,964+0000 INFO GetFileHandler Handler(tag: 3036, GET) unregistering (last) +2013-08-27 01:14:02,965+0000 INFO GetFileHandler Handler(tag: 149, GET) unregistering (last) +2013-08-27 01:14:02,965+0000 INFO ReadBuffer RB-LR-Handler(tag: 149, GET) de-allocating 8 buffers +2013-08-27 01:14:02,968+0000 INFO GetFileHandler Handler(tag: 150, GET) unregistering (last) +2013-08-27 01:14:02,968+0000 INFO ReadBuffer RB-LR-Handler(tag: 150, GET) de-allocating 8 buffers +2013-08-27 01:14:02,968+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:02,970+0000 INFO GetFileHandler Handler(tag: 2575, GET) unregistering (last) +2013-08-27 01:14:02,972+0000 INFO GetFileHandler Handler(tag: 151, GET) unregistering (last) +2013-08-27 01:14:02,972+0000 INFO ReadBuffer RB-LR-Handler(tag: 151, GET) de-allocating 8 buffers +2013-08-27 01:14:02,972+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:02,975+0000 INFO GetFileHandler Handler(tag: 152, GET) unregistering (last) +2013-08-27 01:14:02,975+0000 INFO ReadBuffer RB-LR-Handler(tag: 152, GET) de-allocating 8 buffers +2013-08-27 01:14:02,975+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:02,976+0000 INFO GetFileHandler Handler(tag: 3037, GET) unregistering (last) +2013-08-27 01:14:02,977+0000 INFO GetFileHandler Handler(tag: 153, GET) unregistering (last) +2013-08-27 01:14:02,977+0000 INFO ReadBuffer RB-LR-Handler(tag: 153, GET) de-allocating 8 buffers +2013-08-27 01:14:02,977+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:02,980+0000 INFO GetFileHandler Handler(tag: 154, GET) unregistering (last) +2013-08-27 01:14:02,980+0000 INFO ReadBuffer RB-LR-Handler(tag: 154, GET) de-allocating 8 buffers +2013-08-27 01:14:02,980+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:02,982+0000 INFO GetFileHandler Handler(tag: 2576, GET) unregistering (last) +2013-08-27 01:14:02,985+0000 INFO GetFileHandler Handler(tag: 155, GET) unregistering (last) +2013-08-27 01:14:02,985+0000 INFO ReadBuffer RB-LR-Handler(tag: 155, GET) de-allocating 8 buffers +2013-08-27 01:14:02,985+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:02,989+0000 INFO GetFileHandler Handler(tag: 156, GET) unregistering (last) +2013-08-27 01:14:02,989+0000 INFO ReadBuffer RB-LR-Handler(tag: 156, GET) de-allocating 8 buffers +2013-08-27 01:14:02,989+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:02,989+0000 INFO GetFileHandler Handler(tag: 3052, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:02,989+0000 INFO GetFileHandler Handler(tag: 3052, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:02,989+0000 INFO GetFileHandler Handler(tag: 3052, GET) -> 169 +2013-08-27 01:14:02,989+0000 INFO GetFileHandler Handler(tag: 169, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:02,989+0000 INFO GetFileHandler Handler(tag: 169, GET) reader: LR-Handler(tag: 169, GET) +2013-08-27 01:14:02,989+0000 INFO GetFileHandler Handler(tag: 169, GET) sending length: 148937, 583779936 +2013-08-27 01:14:02,989+0000 INFO ReadBuffer RB-LR-Handler(tag: 169, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:02,989+0000 INFO ReadBuffer RB-LR-Handler(tag: 169, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:02,989+0000 INFO LocalIOProvider LR-Handler(tag: 169, GET) rbuf: RB-LR-Handler(tag: 169, GET) +2013-08-27 01:14:02,989+0000 INFO GetFileHandler Handler(tag: 3038, GET) unregistering (last) +2013-08-27 01:14:02,989+0000 INFO GetFileHandler Handler(tag: 169, GET) unregistering (last) +2013-08-27 01:14:02,989+0000 INFO ReadBuffer RB-LR-Handler(tag: 169, GET) de-allocating 5 buffers +2013-08-27 01:14:02,990+0000 INFO GetFileHandler Handler(tag: 157, GET) unregistering (last) +2013-08-27 01:14:02,990+0000 INFO ReadBuffer RB-LR-Handler(tag: 157, GET) de-allocating 8 buffers +2013-08-27 01:14:02,990+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:02,994+0000 INFO GetFileHandler Handler(tag: 158, GET) unregistering (last) +2013-08-27 01:14:02,994+0000 INFO ReadBuffer RB-LR-Handler(tag: 158, GET) de-allocating 8 buffers +2013-08-27 01:14:02,994+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:02,997+0000 INFO GetFileHandler Handler(tag: 159, GET) unregistering (last) +2013-08-27 01:14:02,997+0000 INFO GetFileHandler Handler(tag: 3051, GET) sending length: 148937, 91992343 +2013-08-27 01:14:02,997+0000 INFO ReadBuffer RB-LR-Handler(tag: 159, GET) de-allocating 8 buffers +2013-08-27 01:14:02,997+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:02,998+0000 INFO GetFileHandler Handler(tag: 3051, GET) unregistering (last) +2013-08-27 01:14:02,998+0000 INFO GetFileHandler Handler(tag: 3053, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:02,998+0000 INFO GetFileHandler Handler(tag: 3053, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:02,998+0000 INFO GetFileHandler Handler(tag: 3053, GET) -> 170 +2013-08-27 01:14:02,999+0000 INFO GetFileHandler Handler(tag: 170, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:02,999+0000 INFO GetFileHandler Handler(tag: 170, GET) reader: LR-Handler(tag: 170, GET) +2013-08-27 01:14:02,999+0000 INFO GetFileHandler Handler(tag: 170, GET) sending length: 148937, 1227704800 +2013-08-27 01:14:02,999+0000 INFO ReadBuffer RB-LR-Handler(tag: 170, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:02,999+0000 INFO ReadBuffer RB-LR-Handler(tag: 170, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:02,999+0000 INFO LocalIOProvider LR-Handler(tag: 170, GET) rbuf: RB-LR-Handler(tag: 170, GET) +2013-08-27 01:14:02,999+0000 INFO GetFileHandler Handler(tag: 170, GET) unregistering (last) +2013-08-27 01:14:02,999+0000 INFO ReadBuffer RB-LR-Handler(tag: 170, GET) de-allocating 5 buffers +2013-08-27 01:14:03,000+0000 INFO GetFileHandler Handler(tag: 2577, GET) unregistering (last) +2013-08-27 01:14:03,000+0000 INFO GetFileHandler Handler(tag: 160, GET) unregistering (last) +2013-08-27 01:14:03,000+0000 INFO ReadBuffer RB-LR-Handler(tag: 160, GET) de-allocating 8 buffers +2013-08-27 01:14:03,000+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,002+0000 INFO GetFileHandler Handler(tag: 161, GET) unregistering (last) +2013-08-27 01:14:03,002+0000 INFO ReadBuffer RB-LR-Handler(tag: 161, GET) de-allocating 8 buffers +2013-08-27 01:14:03,002+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,005+0000 INFO GetFileHandler Handler(tag: 3039, GET) unregistering (last) +2013-08-27 01:14:03,005+0000 INFO GetFileHandler Handler(tag: 162, GET) unregistering (last) +2013-08-27 01:14:03,005+0000 INFO ReadBuffer RB-LR-Handler(tag: 162, GET) de-allocating 8 buffers +2013-08-27 01:14:03,005+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,005+0000 INFO GetFileHandler Handler(tag: 163, GET) unregistering (last) +2013-08-27 01:14:03,005+0000 INFO ReadBuffer RB-LR-Handler(tag: 163, GET) de-allocating 8 buffers +2013-08-27 01:14:03,005+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,006+0000 INFO GetFileHandler Handler(tag: 2578, GET) unregistering (last) +2013-08-27 01:14:03,007+0000 INFO GetFileHandler Handler(tag: 164, GET) unregistering (last) +2013-08-27 01:14:03,007+0000 INFO ReadBuffer RB-LR-Handler(tag: 164, GET) de-allocating 8 buffers +2013-08-27 01:14:03,007+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,007+0000 INFO GetFileHandler Handler(tag: 165, GET) unregistering (last) +2013-08-27 01:14:03,007+0000 INFO ReadBuffer RB-LR-Handler(tag: 165, GET) de-allocating 8 buffers +2013-08-27 01:14:03,008+0000 INFO GetFileHandler Handler(tag: 3040, GET) unregistering (last) +2013-08-27 01:14:03,008+0000 INFO GetFileHandler Handler(tag: 2579, GET) unregistering (last) +2013-08-27 01:14:03,009+0000 INFO GetFileHandler Handler(tag: 3041, GET) unregistering (last) +2013-08-27 01:14:03,009+0000 INFO RuntimeStats$ProgressTicker Selecting site:1 Stage in:32 +2013-08-27 01:14:03,010+0000 INFO GetFileHandler Handler(tag: 3054, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,010+0000 INFO GetFileHandler Handler(tag: 3054, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,010+0000 INFO GetFileHandler Handler(tag: 3054, GET) -> 171 +2013-08-27 01:14:03,010+0000 INFO GetFileHandler Handler(tag: 171, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,010+0000 INFO GetFileHandler Handler(tag: 2580, GET) unregistering (last) +2013-08-27 01:14:03,010+0000 INFO GetFileHandler Handler(tag: 171, GET) reader: LR-Handler(tag: 171, GET) +2013-08-27 01:14:03,010+0000 INFO GetFileHandler Handler(tag: 171, GET) sending length: 148937, 1444230150 +2013-08-27 01:14:03,010+0000 INFO ReadBuffer RB-LR-Handler(tag: 171, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,010+0000 INFO ReadBuffer RB-LR-Handler(tag: 171, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,010+0000 INFO LocalIOProvider LR-Handler(tag: 171, GET) rbuf: RB-LR-Handler(tag: 171, GET) +2013-08-27 01:14:03,010+0000 INFO GetFileHandler Handler(tag: 171, GET) unregistering (last) +2013-08-27 01:14:03,010+0000 INFO ReadBuffer RB-LR-Handler(tag: 171, GET) de-allocating 5 buffers +2013-08-27 01:14:03,011+0000 INFO GetFileHandler Handler(tag: 3042, GET) unregistering (last) +2013-08-27 01:14:03,012+0000 INFO GetFileHandler Handler(tag: 2581, GET) unregistering (last) +2013-08-27 01:14:03,014+0000 INFO GetFileHandler Handler(tag: 3043, GET) unregistering (last) +2013-08-27 01:14:03,015+0000 INFO GetFileHandler Handler(tag: 2582, GET) unregistering (last) +2013-08-27 01:14:03,016+0000 INFO GetFileHandler Handler(tag: 3044, GET) unregistering (last) +2013-08-27 01:14:03,016+0000 INFO GetFileHandler Handler(tag: 3052, GET) sending length: 148937, 662618683 +2013-08-27 01:14:03,016+0000 INFO GetFileHandler Handler(tag: 3052, GET) unregistering (last) +2013-08-27 01:14:03,017+0000 INFO GetFileHandler Handler(tag: 3055, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,017+0000 INFO GetFileHandler Handler(tag: 3055, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,017+0000 INFO GetFileHandler Handler(tag: 3055, GET) -> 172 +2013-08-27 01:14:03,017+0000 INFO GetFileHandler Handler(tag: 172, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,017+0000 INFO GetFileHandler Handler(tag: 172, GET) reader: LR-Handler(tag: 172, GET) +2013-08-27 01:14:03,017+0000 INFO GetFileHandler Handler(tag: 172, GET) sending length: 543, 428637515 +2013-08-27 01:14:03,017+0000 INFO ReadBuffer RB-LR-Handler(tag: 172, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,017+0000 INFO ReadBuffer RB-LR-Handler(tag: 172, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,017+0000 INFO LocalIOProvider LR-Handler(tag: 172, GET) rbuf: RB-LR-Handler(tag: 172, GET) +2013-08-27 01:14:03,017+0000 INFO GetFileHandler Handler(tag: 172, GET) unregistering (last) +2013-08-27 01:14:03,017+0000 INFO ReadBuffer RB-LR-Handler(tag: 172, GET) de-allocating 1 buffers +2013-08-27 01:14:03,017+0000 INFO GetFileHandler Handler(tag: 2583, GET) unregistering (last) +2013-08-27 01:14:03,018+0000 INFO GetFileHandler Handler(tag: 3045, GET) unregistering (last) +2013-08-27 01:14:03,019+0000 INFO GetFileHandler Handler(tag: 2584, GET) unregistering (last) +2013-08-27 01:14:03,019+0000 INFO GetFileHandler Handler(tag: 3053, GET) sending length: 148937, 1541393422 +2013-08-27 01:14:03,020+0000 INFO GetFileHandler Handler(tag: 3053, GET) unregistering (last) +2013-08-27 01:14:03,021+0000 INFO GetFileHandler Handler(tag: 3046, GET) unregistering (last) +2013-08-27 01:14:03,022+0000 INFO GetFileHandler Handler(tag: 2585, GET) unregistering (last) +2013-08-27 01:14:03,022+0000 INFO GetFileHandler Handler(tag: 3047, GET) unregistering (last) +2013-08-27 01:14:03,023+0000 INFO GetFileHandler Handler(tag: 3048, GET) unregistering (last) +2013-08-27 01:14:03,023+0000 INFO GetFileHandler Handler(tag: 3049, GET) unregistering (last) +2013-08-27 01:14:03,023+0000 INFO GetFileHandler Handler(tag: 3050, GET) unregistering (last) +2013-08-27 01:14:03,023+0000 INFO GetFileHandler Handler(tag: 3054, GET) sending length: 148937, 396532217 +2013-08-27 01:14:03,023+0000 INFO GetFileHandler Handler(tag: 3056, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,023+0000 INFO GetFileHandler Handler(tag: 3054, GET) unregistering (last) +2013-08-27 01:14:03,023+0000 INFO GetFileHandler Handler(tag: 3055, GET) sending length: 543, 1260563950 +2013-08-27 01:14:03,023+0000 INFO GetFileHandler Handler(tag: 3055, GET) unregistering (last) +2013-08-27 01:14:03,023+0000 INFO GetFileHandler Handler(tag: 3056, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,023+0000 INFO GetFileHandler Handler(tag: 3056, GET) -> 173 +2013-08-27 01:14:03,023+0000 INFO GetFileHandler Handler(tag: 173, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,023+0000 INFO GetFileHandler Handler(tag: 173, GET) reader: LR-Handler(tag: 173, GET) +2013-08-27 01:14:03,023+0000 INFO GetFileHandler Handler(tag: 173, GET) sending length: 148937, 1709424479 +2013-08-27 01:14:03,023+0000 INFO GetFileHandler Handler(tag: 3056, GET) sending length: 148937, 1260988987 +2013-08-27 01:14:03,023+0000 INFO ReadBuffer RB-LR-Handler(tag: 173, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,023+0000 INFO ReadBuffer RB-LR-Handler(tag: 173, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,023+0000 INFO LocalIOProvider LR-Handler(tag: 173, GET) rbuf: RB-LR-Handler(tag: 173, GET) +2013-08-27 01:14:03,024+0000 INFO GetFileHandler Handler(tag: 173, GET) unregistering (last) +2013-08-27 01:14:03,024+0000 INFO GetFileHandler Handler(tag: 3056, GET) unregistering (last) +2013-08-27 01:14:03,024+0000 INFO ReadBuffer RB-LR-Handler(tag: 173, GET) de-allocating 5 buffers +2013-08-27 01:14:03,024+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,024+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,024+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,024+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,041+0000 INFO GetFileHandler Handler(tag: 3057, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,041+0000 INFO GetFileHandler Handler(tag: 3057, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,041+0000 INFO GetFileHandler Handler(tag: 3057, GET) -> 174 +2013-08-27 01:14:03,041+0000 INFO GetFileHandler Handler(tag: 174, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,041+0000 INFO GetFileHandler Handler(tag: 174, GET) reader: LR-Handler(tag: 174, GET) +2013-08-27 01:14:03,041+0000 INFO GetFileHandler Handler(tag: 174, GET) sending length: 148937, 23965417 +2013-08-27 01:14:03,042+0000 INFO GetFileHandler Handler(tag: 3057, GET) sending length: 148937, 1207321530 +2013-08-27 01:14:03,042+0000 INFO ReadBuffer RB-LR-Handler(tag: 174, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,042+0000 INFO ReadBuffer RB-LR-Handler(tag: 174, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,042+0000 INFO LocalIOProvider LR-Handler(tag: 174, GET) rbuf: RB-LR-Handler(tag: 174, GET) +2013-08-27 01:14:03,042+0000 INFO GetFileHandler Handler(tag: 174, GET) unregistering (last) +2013-08-27 01:14:03,042+0000 INFO GetFileHandler Handler(tag: 3057, GET) unregistering (last) +2013-08-27 01:14:03,042+0000 INFO ReadBuffer RB-LR-Handler(tag: 174, GET) de-allocating 5 buffers +2013-08-27 01:14:03,042+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,042+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,042+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,042+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,043+0000 INFO GetFileHandler Handler(tag: 3058, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,043+0000 INFO GetFileHandler Handler(tag: 3058, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,043+0000 INFO GetFileHandler Handler(tag: 3058, GET) -> 175 +2013-08-27 01:14:03,043+0000 INFO GetFileHandler Handler(tag: 175, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,043+0000 INFO GetFileHandler Handler(tag: 175, GET) reader: LR-Handler(tag: 175, GET) +2013-08-27 01:14:03,043+0000 INFO GetFileHandler Handler(tag: 175, GET) sending length: 148937, 443097568 +2013-08-27 01:14:03,043+0000 INFO GetFileHandler Handler(tag: 3058, GET) sending length: 148937, 1815021227 +2013-08-27 01:14:03,043+0000 INFO ReadBuffer RB-LR-Handler(tag: 175, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,043+0000 INFO ReadBuffer RB-LR-Handler(tag: 175, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,043+0000 INFO LocalIOProvider LR-Handler(tag: 175, GET) rbuf: RB-LR-Handler(tag: 175, GET) +2013-08-27 01:14:03,043+0000 INFO GetFileHandler Handler(tag: 175, GET) unregistering (last) +2013-08-27 01:14:03,043+0000 INFO GetFileHandler Handler(tag: 3058, GET) unregistering (last) +2013-08-27 01:14:03,043+0000 INFO ReadBuffer RB-LR-Handler(tag: 175, GET) de-allocating 5 buffers +2013-08-27 01:14:03,043+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,043+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,043+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,043+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,045+0000 INFO GetFileHandler Handler(tag: 3059, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,045+0000 INFO GetFileHandler Handler(tag: 3059, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,045+0000 INFO GetFileHandler Handler(tag: 3059, GET) -> 176 +2013-08-27 01:14:03,045+0000 INFO GetFileHandler Handler(tag: 176, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,045+0000 INFO GetFileHandler Handler(tag: 176, GET) reader: LR-Handler(tag: 176, GET) +2013-08-27 01:14:03,045+0000 INFO GetFileHandler Handler(tag: 176, GET) sending length: 148937, 2047058042 +2013-08-27 01:14:03,045+0000 INFO GetFileHandler Handler(tag: 3059, GET) sending length: 148937, 69003307 +2013-08-27 01:14:03,045+0000 INFO ReadBuffer RB-LR-Handler(tag: 176, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,045+0000 INFO ReadBuffer RB-LR-Handler(tag: 176, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,045+0000 INFO LocalIOProvider LR-Handler(tag: 176, GET) rbuf: RB-LR-Handler(tag: 176, GET) +2013-08-27 01:14:03,045+0000 INFO GetFileHandler Handler(tag: 176, GET) unregistering (last) +2013-08-27 01:14:03,045+0000 INFO ReadBuffer RB-LR-Handler(tag: 176, GET) de-allocating 5 buffers +2013-08-27 01:14:03,045+0000 INFO GetFileHandler Handler(tag: 3059, GET) unregistering (last) +2013-08-27 01:14:03,045+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,045+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,045+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,045+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,046+0000 INFO GetFileHandler Handler(tag: 3060, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,046+0000 INFO GetFileHandler Handler(tag: 3060, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,046+0000 INFO GetFileHandler Handler(tag: 3060, GET) -> 177 +2013-08-27 01:14:03,046+0000 INFO GetFileHandler Handler(tag: 177, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,046+0000 INFO GetFileHandler Handler(tag: 177, GET) reader: LR-Handler(tag: 177, GET) +2013-08-27 01:14:03,046+0000 INFO GetFileHandler Handler(tag: 177, GET) sending length: 148937, 521180963 +2013-08-27 01:14:03,046+0000 INFO GetFileHandler Handler(tag: 3060, GET) sending length: 148937, 2050132675 +2013-08-27 01:14:03,046+0000 INFO ReadBuffer RB-LR-Handler(tag: 177, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,046+0000 INFO ReadBuffer RB-LR-Handler(tag: 177, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,047+0000 INFO LocalIOProvider LR-Handler(tag: 177, GET) rbuf: RB-LR-Handler(tag: 177, GET) +2013-08-27 01:14:03,047+0000 INFO GetFileHandler Handler(tag: 177, GET) unregistering (last) +2013-08-27 01:14:03,047+0000 INFO GetFileHandler Handler(tag: 3060, GET) unregistering (last) +2013-08-27 01:14:03,047+0000 INFO ReadBuffer RB-LR-Handler(tag: 177, GET) de-allocating 5 buffers +2013-08-27 01:14:03,047+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,047+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,047+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,047+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,048+0000 INFO GetFileHandler Handler(tag: 3061, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,048+0000 INFO GetFileHandler Handler(tag: 3061, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,048+0000 INFO GetFileHandler Handler(tag: 3061, GET) -> 178 +2013-08-27 01:14:03,048+0000 INFO GetFileHandler Handler(tag: 178, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,048+0000 INFO GetFileHandler Handler(tag: 178, GET) reader: LR-Handler(tag: 178, GET) +2013-08-27 01:14:03,048+0000 INFO GetFileHandler Handler(tag: 178, GET) sending length: 148937, 1263086663 +2013-08-27 01:14:03,048+0000 INFO GetFileHandler Handler(tag: 3061, GET) sending length: 148937, 821694446 +2013-08-27 01:14:03,048+0000 INFO ReadBuffer RB-LR-Handler(tag: 178, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,048+0000 INFO ReadBuffer RB-LR-Handler(tag: 178, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,048+0000 INFO LocalIOProvider LR-Handler(tag: 178, GET) rbuf: RB-LR-Handler(tag: 178, GET) +2013-08-27 01:14:03,048+0000 INFO GetFileHandler Handler(tag: 178, GET) unregistering (last) +2013-08-27 01:14:03,048+0000 INFO GetFileHandler Handler(tag: 3061, GET) unregistering (last) +2013-08-27 01:14:03,048+0000 INFO ReadBuffer RB-LR-Handler(tag: 178, GET) de-allocating 5 buffers +2013-08-27 01:14:03,048+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,048+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,048+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,048+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,050+0000 INFO GetFileHandler Handler(tag: 3062, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,050+0000 INFO GetFileHandler Handler(tag: 3062, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,050+0000 INFO GetFileHandler Handler(tag: 3062, GET) -> 179 +2013-08-27 01:14:03,050+0000 INFO GetFileHandler Handler(tag: 179, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,050+0000 INFO GetFileHandler Handler(tag: 179, GET) reader: LR-Handler(tag: 179, GET) +2013-08-27 01:14:03,050+0000 INFO GetFileHandler Handler(tag: 179, GET) sending length: 543, 2131040067 +2013-08-27 01:14:03,050+0000 INFO GetFileHandler Handler(tag: 3062, GET) sending length: 543, 658141403 +2013-08-27 01:14:03,050+0000 INFO ReadBuffer RB-LR-Handler(tag: 179, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,050+0000 INFO ReadBuffer RB-LR-Handler(tag: 179, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,050+0000 INFO LocalIOProvider LR-Handler(tag: 179, GET) rbuf: RB-LR-Handler(tag: 179, GET) +2013-08-27 01:14:03,050+0000 INFO GetFileHandler Handler(tag: 179, GET) unregistering (last) +2013-08-27 01:14:03,050+0000 INFO ReadBuffer RB-LR-Handler(tag: 179, GET) de-allocating 1 buffers +2013-08-27 01:14:03,050+0000 INFO GetFileHandler Handler(tag: 3062, GET) unregistering (last) +2013-08-27 01:14:03,051+0000 INFO GetFileHandler Handler(tag: 3063, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,051+0000 INFO GetFileHandler Handler(tag: 3063, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,051+0000 INFO GetFileHandler Handler(tag: 3063, GET) -> 180 +2013-08-27 01:14:03,051+0000 INFO GetFileHandler Handler(tag: 180, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,051+0000 INFO GetFileHandler Handler(tag: 180, GET) reader: LR-Handler(tag: 180, GET) +2013-08-27 01:14:03,051+0000 INFO GetFileHandler Handler(tag: 180, GET) sending length: 148937, 220931271 +2013-08-27 01:14:03,051+0000 INFO GetFileHandler Handler(tag: 3063, GET) sending length: 148937, 192646034 +2013-08-27 01:14:03,051+0000 INFO ReadBuffer RB-LR-Handler(tag: 180, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,051+0000 INFO ReadBuffer RB-LR-Handler(tag: 180, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,051+0000 INFO LocalIOProvider LR-Handler(tag: 180, GET) rbuf: RB-LR-Handler(tag: 180, GET) +2013-08-27 01:14:03,052+0000 INFO GetFileHandler Handler(tag: 180, GET) unregistering (last) +2013-08-27 01:14:03,052+0000 INFO GetFileHandler Handler(tag: 3063, GET) unregistering (last) +2013-08-27 01:14:03,052+0000 INFO ReadBuffer RB-LR-Handler(tag: 180, GET) de-allocating 5 buffers +2013-08-27 01:14:03,052+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,052+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,052+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,052+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,054+0000 INFO GetFileHandler Handler(tag: 3064, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,054+0000 INFO GetFileHandler Handler(tag: 3064, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,054+0000 INFO GetFileHandler Handler(tag: 3064, GET) -> 181 +2013-08-27 01:14:03,054+0000 INFO GetFileHandler Handler(tag: 181, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,054+0000 INFO GetFileHandler Handler(tag: 181, GET) reader: LR-Handler(tag: 181, GET) +2013-08-27 01:14:03,054+0000 INFO GetFileHandler Handler(tag: 181, GET) sending length: 543, 714233355 +2013-08-27 01:14:03,054+0000 INFO GetFileHandler Handler(tag: 3064, GET) sending length: 543, 1833894402 +2013-08-27 01:14:03,054+0000 INFO ReadBuffer RB-LR-Handler(tag: 181, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,054+0000 INFO ReadBuffer RB-LR-Handler(tag: 181, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,054+0000 INFO LocalIOProvider LR-Handler(tag: 181, GET) rbuf: RB-LR-Handler(tag: 181, GET) +2013-08-27 01:14:03,054+0000 INFO GetFileHandler Handler(tag: 181, GET) unregistering (last) +2013-08-27 01:14:03,054+0000 INFO ReadBuffer RB-LR-Handler(tag: 181, GET) de-allocating 1 buffers +2013-08-27 01:14:03,054+0000 INFO GetFileHandler Handler(tag: 3064, GET) unregistering (last) +2013-08-27 01:14:03,055+0000 INFO GetFileHandler Handler(tag: 3065, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,055+0000 INFO GetFileHandler Handler(tag: 3065, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,055+0000 INFO GetFileHandler Handler(tag: 3065, GET) -> 182 +2013-08-27 01:14:03,056+0000 INFO GetFileHandler Handler(tag: 182, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,056+0000 INFO GetFileHandler Handler(tag: 182, GET) reader: LR-Handler(tag: 182, GET) +2013-08-27 01:14:03,056+0000 INFO GetFileHandler Handler(tag: 182, GET) sending length: 148937, 556589322 +2013-08-27 01:14:03,056+0000 INFO GetFileHandler Handler(tag: 3065, GET) sending length: 148937, 157968522 +2013-08-27 01:14:03,056+0000 INFO ReadBuffer RB-LR-Handler(tag: 182, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,056+0000 INFO ReadBuffer RB-LR-Handler(tag: 182, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,056+0000 INFO LocalIOProvider LR-Handler(tag: 182, GET) rbuf: RB-LR-Handler(tag: 182, GET) +2013-08-27 01:14:03,056+0000 INFO GetFileHandler Handler(tag: 182, GET) unregistering (last) +2013-08-27 01:14:03,056+0000 INFO GetFileHandler Handler(tag: 3065, GET) unregistering (last) +2013-08-27 01:14:03,056+0000 INFO ReadBuffer RB-LR-Handler(tag: 182, GET) de-allocating 5 buffers +2013-08-27 01:14:03,056+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,056+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,056+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,056+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,057+0000 INFO GetFileHandler Handler(tag: 3066, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,057+0000 INFO GetFileHandler Handler(tag: 3066, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,057+0000 INFO GetFileHandler Handler(tag: 3066, GET) -> 183 +2013-08-27 01:14:03,057+0000 INFO GetFileHandler Handler(tag: 183, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,057+0000 INFO GetFileHandler Handler(tag: 183, GET) reader: LR-Handler(tag: 183, GET) +2013-08-27 01:14:03,057+0000 INFO GetFileHandler Handler(tag: 183, GET) sending length: 148937, 137489369 +2013-08-27 01:14:03,057+0000 INFO GetFileHandler Handler(tag: 3066, GET) sending length: 148937, 91420611 +2013-08-27 01:14:03,057+0000 INFO ReadBuffer RB-LR-Handler(tag: 183, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,057+0000 INFO ReadBuffer RB-LR-Handler(tag: 183, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,057+0000 INFO LocalIOProvider LR-Handler(tag: 183, GET) rbuf: RB-LR-Handler(tag: 183, GET) +2013-08-27 01:14:03,057+0000 INFO GetFileHandler Handler(tag: 183, GET) unregistering (last) +2013-08-27 01:14:03,057+0000 INFO GetFileHandler Handler(tag: 3066, GET) unregistering (last) +2013-08-27 01:14:03,057+0000 INFO ReadBuffer RB-LR-Handler(tag: 183, GET) de-allocating 5 buffers +2013-08-27 01:14:03,057+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,057+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,057+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,057+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,059+0000 INFO GetFileHandler Handler(tag: 3067, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,059+0000 INFO GetFileHandler Handler(tag: 3067, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,059+0000 INFO GetFileHandler Handler(tag: 3067, GET) -> 184 +2013-08-27 01:14:03,059+0000 INFO GetFileHandler Handler(tag: 184, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,059+0000 INFO GetFileHandler Handler(tag: 184, GET) reader: LR-Handler(tag: 184, GET) +2013-08-27 01:14:03,059+0000 INFO GetFileHandler Handler(tag: 184, GET) sending length: 148937, 783837048 +2013-08-27 01:14:03,059+0000 INFO GetFileHandler Handler(tag: 3067, GET) sending length: 148937, 1284575038 +2013-08-27 01:14:03,059+0000 INFO ReadBuffer RB-LR-Handler(tag: 184, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,059+0000 INFO ReadBuffer RB-LR-Handler(tag: 184, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,059+0000 INFO LocalIOProvider LR-Handler(tag: 184, GET) rbuf: RB-LR-Handler(tag: 184, GET) +2013-08-27 01:14:03,059+0000 INFO GetFileHandler Handler(tag: 184, GET) unregistering (last) +2013-08-27 01:14:03,059+0000 INFO GetFileHandler Handler(tag: 3067, GET) unregistering (last) +2013-08-27 01:14:03,059+0000 INFO ReadBuffer RB-LR-Handler(tag: 184, GET) de-allocating 5 buffers +2013-08-27 01:14:03,059+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,059+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,059+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,059+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,060+0000 INFO GetFileHandler Handler(tag: 3068, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,060+0000 INFO GetFileHandler Handler(tag: 3068, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,060+0000 INFO GetFileHandler Handler(tag: 3068, GET) -> 185 +2013-08-27 01:14:03,060+0000 INFO GetFileHandler Handler(tag: 185, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,060+0000 INFO GetFileHandler Handler(tag: 185, GET) reader: LR-Handler(tag: 185, GET) +2013-08-27 01:14:03,061+0000 INFO GetFileHandler Handler(tag: 185, GET) sending length: 148937, 523754722 +2013-08-27 01:14:03,061+0000 INFO GetFileHandler Handler(tag: 3068, GET) sending length: 148937, 210143601 +2013-08-27 01:14:03,061+0000 INFO ReadBuffer RB-LR-Handler(tag: 185, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,061+0000 INFO ReadBuffer RB-LR-Handler(tag: 185, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,061+0000 INFO LocalIOProvider LR-Handler(tag: 185, GET) rbuf: RB-LR-Handler(tag: 185, GET) +2013-08-27 01:14:03,061+0000 INFO GetFileHandler Handler(tag: 185, GET) unregistering (last) +2013-08-27 01:14:03,061+0000 INFO GetFileHandler Handler(tag: 3068, GET) unregistering (last) +2013-08-27 01:14:03,061+0000 INFO ReadBuffer RB-LR-Handler(tag: 185, GET) de-allocating 5 buffers +2013-08-27 01:14:03,061+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,061+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,061+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,061+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,062+0000 INFO GetFileHandler Handler(tag: 3069, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,062+0000 INFO GetFileHandler Handler(tag: 3069, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,062+0000 INFO GetFileHandler Handler(tag: 3069, GET) -> 186 +2013-08-27 01:14:03,062+0000 INFO GetFileHandler Handler(tag: 186, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,062+0000 INFO GetFileHandler Handler(tag: 186, GET) reader: LR-Handler(tag: 186, GET) +2013-08-27 01:14:03,062+0000 INFO GetFileHandler Handler(tag: 186, GET) sending length: 148937, 1641998555 +2013-08-27 01:14:03,062+0000 INFO GetFileHandler Handler(tag: 3069, GET) sending length: 148937, 1904849935 +2013-08-27 01:14:03,062+0000 INFO ReadBuffer RB-LR-Handler(tag: 186, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,062+0000 INFO ReadBuffer RB-LR-Handler(tag: 186, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,062+0000 INFO LocalIOProvider LR-Handler(tag: 186, GET) rbuf: RB-LR-Handler(tag: 186, GET) +2013-08-27 01:14:03,062+0000 INFO GetFileHandler Handler(tag: 186, GET) unregistering (last) +2013-08-27 01:14:03,062+0000 INFO GetFileHandler Handler(tag: 3069, GET) unregistering (last) +2013-08-27 01:14:03,062+0000 INFO ReadBuffer RB-LR-Handler(tag: 186, GET) de-allocating 5 buffers +2013-08-27 01:14:03,062+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,062+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,062+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,062+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,064+0000 INFO GetFileHandler Handler(tag: 3070, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,064+0000 INFO GetFileHandler Handler(tag: 3070, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,064+0000 INFO GetFileHandler Handler(tag: 3070, GET) -> 187 +2013-08-27 01:14:03,064+0000 INFO GetFileHandler Handler(tag: 187, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,064+0000 INFO GetFileHandler Handler(tag: 187, GET) reader: LR-Handler(tag: 187, GET) +2013-08-27 01:14:03,064+0000 INFO GetFileHandler Handler(tag: 187, GET) sending length: 543, 1191209411 +2013-08-27 01:14:03,064+0000 INFO GetFileHandler Handler(tag: 3070, GET) sending length: 543, 1814013343 +2013-08-27 01:14:03,064+0000 INFO ReadBuffer RB-LR-Handler(tag: 187, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,064+0000 INFO ReadBuffer RB-LR-Handler(tag: 187, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,064+0000 INFO LocalIOProvider LR-Handler(tag: 187, GET) rbuf: RB-LR-Handler(tag: 187, GET) +2013-08-27 01:14:03,064+0000 INFO GetFileHandler Handler(tag: 187, GET) unregistering (last) +2013-08-27 01:14:03,065+0000 INFO GetFileHandler Handler(tag: 3070, GET) unregistering (last) +2013-08-27 01:14:03,065+0000 INFO GetFileHandler Handler(tag: 3071, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,065+0000 INFO ReadBuffer RB-LR-Handler(tag: 187, GET) de-allocating 1 buffers +2013-08-27 01:14:03,065+0000 INFO GetFileHandler Handler(tag: 3071, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,065+0000 INFO GetFileHandler Handler(tag: 3071, GET) -> 188 +2013-08-27 01:14:03,065+0000 INFO GetFileHandler Handler(tag: 188, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,065+0000 INFO GetFileHandler Handler(tag: 188, GET) reader: LR-Handler(tag: 188, GET) +2013-08-27 01:14:03,065+0000 INFO GetFileHandler Handler(tag: 188, GET) sending length: 2093, 813732571 +2013-08-27 01:14:03,065+0000 INFO GetFileHandler Handler(tag: 3071, GET) sending length: 2093, 1227456701 +2013-08-27 01:14:03,065+0000 INFO ReadBuffer RB-LR-Handler(tag: 188, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,065+0000 INFO ReadBuffer RB-LR-Handler(tag: 188, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,065+0000 INFO LocalIOProvider LR-Handler(tag: 188, GET) rbuf: RB-LR-Handler(tag: 188, GET) +2013-08-27 01:14:03,065+0000 INFO GetFileHandler Handler(tag: 188, GET) unregistering (last) +2013-08-27 01:14:03,065+0000 INFO ReadBuffer RB-LR-Handler(tag: 188, GET) de-allocating 1 buffers +2013-08-27 01:14:03,065+0000 INFO GetFileHandler Handler(tag: 3071, GET) unregistering (last) +2013-08-27 01:14:03,067+0000 INFO GetFileHandler Handler(tag: 3072, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,067+0000 INFO GetFileHandler Handler(tag: 3072, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,067+0000 INFO GetFileHandler Handler(tag: 3072, GET) -> 189 +2013-08-27 01:14:03,067+0000 INFO GetFileHandler Handler(tag: 189, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,067+0000 INFO GetFileHandler Handler(tag: 189, GET) reader: LR-Handler(tag: 189, GET) +2013-08-27 01:14:03,067+0000 INFO GetFileHandler Handler(tag: 189, GET) sending length: 543, 1363276325 +2013-08-27 01:14:03,067+0000 INFO GetFileHandler Handler(tag: 3072, GET) sending length: 543, 1082164432 +2013-08-27 01:14:03,067+0000 INFO ReadBuffer RB-LR-Handler(tag: 189, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,067+0000 INFO ReadBuffer RB-LR-Handler(tag: 189, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,067+0000 INFO LocalIOProvider LR-Handler(tag: 189, GET) rbuf: RB-LR-Handler(tag: 189, GET) +2013-08-27 01:14:03,067+0000 INFO GetFileHandler Handler(tag: 189, GET) unregistering (last) +2013-08-27 01:14:03,067+0000 INFO ReadBuffer RB-LR-Handler(tag: 189, GET) de-allocating 1 buffers +2013-08-27 01:14:03,067+0000 INFO GetFileHandler Handler(tag: 3072, GET) unregistering (last) +2013-08-27 01:14:03,069+0000 INFO GetFileHandler Handler(tag: 3073, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,069+0000 INFO GetFileHandler Handler(tag: 3073, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,069+0000 INFO GetFileHandler Handler(tag: 3073, GET) -> 190 +2013-08-27 01:14:03,069+0000 INFO GetFileHandler Handler(tag: 190, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,069+0000 INFO GetFileHandler Handler(tag: 190, GET) reader: LR-Handler(tag: 190, GET) +2013-08-27 01:14:03,069+0000 INFO GetFileHandler Handler(tag: 190, GET) sending length: 543, 1851880922 +2013-08-27 01:14:03,069+0000 INFO GetFileHandler Handler(tag: 3073, GET) sending length: 543, 1082160083 +2013-08-27 01:14:03,070+0000 INFO ReadBuffer RB-LR-Handler(tag: 190, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,070+0000 INFO ReadBuffer RB-LR-Handler(tag: 190, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,070+0000 INFO LocalIOProvider LR-Handler(tag: 190, GET) rbuf: RB-LR-Handler(tag: 190, GET) +2013-08-27 01:14:03,070+0000 INFO GetFileHandler Handler(tag: 190, GET) unregistering (last) +2013-08-27 01:14:03,070+0000 INFO ReadBuffer RB-LR-Handler(tag: 190, GET) de-allocating 1 buffers +2013-08-27 01:14:03,070+0000 INFO GetFileHandler Handler(tag: 3073, GET) unregistering (last) +2013-08-27 01:14:03,072+0000 INFO GetFileHandler Handler(tag: 3074, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,072+0000 INFO GetFileHandler Handler(tag: 3074, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,072+0000 INFO GetFileHandler Handler(tag: 3074, GET) -> 191 +2013-08-27 01:14:03,072+0000 INFO GetFileHandler Handler(tag: 191, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,072+0000 INFO GetFileHandler Handler(tag: 191, GET) reader: LR-Handler(tag: 191, GET) +2013-08-27 01:14:03,072+0000 INFO GetFileHandler Handler(tag: 191, GET) sending length: 543, 1841754451 +2013-08-27 01:14:03,072+0000 INFO GetFileHandler Handler(tag: 3074, GET) sending length: 543, 537770099 +2013-08-27 01:14:03,072+0000 INFO ReadBuffer RB-LR-Handler(tag: 191, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,072+0000 INFO ReadBuffer RB-LR-Handler(tag: 191, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,072+0000 INFO LocalIOProvider LR-Handler(tag: 191, GET) rbuf: RB-LR-Handler(tag: 191, GET) +2013-08-27 01:14:03,072+0000 INFO GetFileHandler Handler(tag: 191, GET) unregistering (last) +2013-08-27 01:14:03,072+0000 INFO ReadBuffer RB-LR-Handler(tag: 191, GET) de-allocating 1 buffers +2013-08-27 01:14:03,072+0000 INFO GetFileHandler Handler(tag: 3074, GET) unregistering (last) +2013-08-27 01:14:03,075+0000 INFO GetFileHandler Handler(tag: 3075, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,075+0000 INFO GetFileHandler Handler(tag: 3075, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,075+0000 INFO GetFileHandler Handler(tag: 3075, GET) -> 192 +2013-08-27 01:14:03,075+0000 INFO GetFileHandler Handler(tag: 192, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,075+0000 INFO GetFileHandler Handler(tag: 192, GET) reader: LR-Handler(tag: 192, GET) +2013-08-27 01:14:03,075+0000 INFO GetFileHandler Handler(tag: 192, GET) sending length: 543, 15244440 +2013-08-27 01:14:03,075+0000 INFO GetFileHandler Handler(tag: 3075, GET) sending length: 543, 662749087 +2013-08-27 01:14:03,075+0000 INFO ReadBuffer RB-LR-Handler(tag: 192, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,075+0000 INFO ReadBuffer RB-LR-Handler(tag: 192, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,075+0000 INFO LocalIOProvider LR-Handler(tag: 192, GET) rbuf: RB-LR-Handler(tag: 192, GET) +2013-08-27 01:14:03,075+0000 INFO GetFileHandler Handler(tag: 192, GET) unregistering (last) +2013-08-27 01:14:03,075+0000 INFO ReadBuffer RB-LR-Handler(tag: 192, GET) de-allocating 1 buffers +2013-08-27 01:14:03,075+0000 INFO GetFileHandler Handler(tag: 3075, GET) unregistering (last) +2013-08-27 01:14:03,077+0000 INFO GetFileHandler Handler(tag: 3076, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,077+0000 INFO GetFileHandler Handler(tag: 3076, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,077+0000 INFO GetFileHandler Handler(tag: 3076, GET) -> 193 +2013-08-27 01:14:03,077+0000 INFO GetFileHandler Handler(tag: 193, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,077+0000 INFO GetFileHandler Handler(tag: 193, GET) reader: LR-Handler(tag: 193, GET) +2013-08-27 01:14:03,077+0000 INFO GetFileHandler Handler(tag: 193, GET) sending length: 543, 383169910 +2013-08-27 01:14:03,077+0000 INFO GetFileHandler Handler(tag: 3076, GET) sending length: 543, 1780703664 +2013-08-27 01:14:03,077+0000 INFO ReadBuffer RB-LR-Handler(tag: 193, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,077+0000 INFO ReadBuffer RB-LR-Handler(tag: 193, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,077+0000 INFO LocalIOProvider LR-Handler(tag: 193, GET) rbuf: RB-LR-Handler(tag: 193, GET) +2013-08-27 01:14:03,077+0000 INFO GetFileHandler Handler(tag: 193, GET) unregistering (last) +2013-08-27 01:14:03,077+0000 INFO ReadBuffer RB-LR-Handler(tag: 193, GET) de-allocating 1 buffers +2013-08-27 01:14:03,077+0000 INFO GetFileHandler Handler(tag: 3076, GET) unregistering (last) +2013-08-27 01:14:03,080+0000 INFO GetFileHandler Handler(tag: 3077, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,080+0000 INFO GetFileHandler Handler(tag: 3077, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,080+0000 INFO GetFileHandler Handler(tag: 3077, GET) -> 194 +2013-08-27 01:14:03,080+0000 INFO GetFileHandler Handler(tag: 194, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,080+0000 INFO GetFileHandler Handler(tag: 194, GET) reader: LR-Handler(tag: 194, GET) +2013-08-27 01:14:03,080+0000 INFO GetFileHandler Handler(tag: 194, GET) sending length: 543, 1544057083 +2013-08-27 01:14:03,080+0000 INFO GetFileHandler Handler(tag: 3077, GET) sending length: 543, 775003633 +2013-08-27 01:14:03,080+0000 INFO ReadBuffer RB-LR-Handler(tag: 194, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,080+0000 INFO ReadBuffer RB-LR-Handler(tag: 194, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,080+0000 INFO LocalIOProvider LR-Handler(tag: 194, GET) rbuf: RB-LR-Handler(tag: 194, GET) +2013-08-27 01:14:03,080+0000 INFO GetFileHandler Handler(tag: 194, GET) unregistering (last) +2013-08-27 01:14:03,080+0000 INFO GetFileHandler Handler(tag: 3078, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,080+0000 INFO GetFileHandler Handler(tag: 3077, GET) unregistering (last) +2013-08-27 01:14:03,080+0000 INFO ReadBuffer RB-LR-Handler(tag: 194, GET) de-allocating 1 buffers +2013-08-27 01:14:03,080+0000 INFO GetFileHandler Handler(tag: 3078, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,080+0000 INFO GetFileHandler Handler(tag: 3078, GET) -> 195 +2013-08-27 01:14:03,080+0000 INFO GetFileHandler Handler(tag: 195, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,080+0000 INFO GetFileHandler Handler(tag: 195, GET) reader: LR-Handler(tag: 195, GET) +2013-08-27 01:14:03,080+0000 INFO GetFileHandler Handler(tag: 195, GET) sending length: 2093, 1154926722 +2013-08-27 01:14:03,080+0000 INFO GetFileHandler Handler(tag: 3078, GET) sending length: 2093, 1896215068 +2013-08-27 01:14:03,080+0000 INFO ReadBuffer RB-LR-Handler(tag: 195, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,080+0000 INFO ReadBuffer RB-LR-Handler(tag: 195, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,080+0000 INFO LocalIOProvider LR-Handler(tag: 195, GET) rbuf: RB-LR-Handler(tag: 195, GET) +2013-08-27 01:14:03,080+0000 INFO GetFileHandler Handler(tag: 195, GET) unregistering (last) +2013-08-27 01:14:03,080+0000 INFO GetFileHandler Handler(tag: 3078, GET) unregistering (last) +2013-08-27 01:14:03,080+0000 INFO ReadBuffer RB-LR-Handler(tag: 195, GET) de-allocating 1 buffers +2013-08-27 01:14:03,082+0000 INFO GetFileHandler Handler(tag: 3079, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,082+0000 INFO GetFileHandler Handler(tag: 3079, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,082+0000 INFO GetFileHandler Handler(tag: 3079, GET) -> 196 +2013-08-27 01:14:03,082+0000 INFO GetFileHandler Handler(tag: 196, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,082+0000 INFO GetFileHandler Handler(tag: 196, GET) reader: LR-Handler(tag: 196, GET) +2013-08-27 01:14:03,082+0000 INFO GetFileHandler Handler(tag: 196, GET) sending length: 543, 682231079 +2013-08-27 01:14:03,082+0000 INFO GetFileHandler Handler(tag: 3079, GET) sending length: 543, 842553420 +2013-08-27 01:14:03,082+0000 INFO ReadBuffer RB-LR-Handler(tag: 196, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,082+0000 INFO ReadBuffer RB-LR-Handler(tag: 196, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,082+0000 INFO LocalIOProvider LR-Handler(tag: 196, GET) rbuf: RB-LR-Handler(tag: 196, GET) +2013-08-27 01:14:03,082+0000 INFO GetFileHandler Handler(tag: 196, GET) unregistering (last) +2013-08-27 01:14:03,082+0000 INFO ReadBuffer RB-LR-Handler(tag: 196, GET) de-allocating 1 buffers +2013-08-27 01:14:03,082+0000 INFO GetFileHandler Handler(tag: 3079, GET) unregistering (last) +2013-08-27 01:14:03,082+0000 INFO GetFileHandler Handler(tag: 3080, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,082+0000 INFO GetFileHandler Handler(tag: 3080, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,083+0000 INFO GetFileHandler Handler(tag: 3080, GET) -> 197 +2013-08-27 01:14:03,083+0000 INFO GetFileHandler Handler(tag: 197, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,083+0000 INFO GetFileHandler Handler(tag: 197, GET) reader: LR-Handler(tag: 197, GET) +2013-08-27 01:14:03,083+0000 INFO GetFileHandler Handler(tag: 197, GET) sending length: 2093, 2030607121 +2013-08-27 01:14:03,083+0000 INFO GetFileHandler Handler(tag: 3080, GET) sending length: 2093, 603764523 +2013-08-27 01:14:03,083+0000 INFO ReadBuffer RB-LR-Handler(tag: 197, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,083+0000 INFO ReadBuffer RB-LR-Handler(tag: 197, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,083+0000 INFO LocalIOProvider LR-Handler(tag: 197, GET) rbuf: RB-LR-Handler(tag: 197, GET) +2013-08-27 01:14:03,083+0000 INFO GetFileHandler Handler(tag: 197, GET) unregistering (last) +2013-08-27 01:14:03,083+0000 INFO ReadBuffer RB-LR-Handler(tag: 197, GET) de-allocating 1 buffers +2013-08-27 01:14:03,083+0000 INFO GetFileHandler Handler(tag: 3080, GET) unregistering (last) +2013-08-27 01:14:03,085+0000 INFO GetFileHandler Handler(tag: 3081, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,085+0000 INFO GetFileHandler Handler(tag: 3081, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,085+0000 INFO GetFileHandler Handler(tag: 3081, GET) -> 198 +2013-08-27 01:14:03,085+0000 INFO GetFileHandler Handler(tag: 198, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,085+0000 INFO GetFileHandler Handler(tag: 198, GET) reader: LR-Handler(tag: 198, GET) +2013-08-27 01:14:03,085+0000 INFO GetFileHandler Handler(tag: 198, GET) sending length: 543, 2074868858 +2013-08-27 01:14:03,085+0000 INFO GetFileHandler Handler(tag: 3081, GET) sending length: 543, 1481436420 +2013-08-27 01:14:03,085+0000 INFO ReadBuffer RB-LR-Handler(tag: 198, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,085+0000 INFO ReadBuffer RB-LR-Handler(tag: 198, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,085+0000 INFO LocalIOProvider LR-Handler(tag: 198, GET) rbuf: RB-LR-Handler(tag: 198, GET) +2013-08-27 01:14:03,085+0000 INFO GetFileHandler Handler(tag: 198, GET) unregistering (last) +2013-08-27 01:14:03,085+0000 INFO ReadBuffer RB-LR-Handler(tag: 198, GET) de-allocating 1 buffers +2013-08-27 01:14:03,085+0000 INFO GetFileHandler Handler(tag: 3081, GET) unregistering (last) +2013-08-27 01:14:03,087+0000 INFO GetFileHandler Handler(tag: 3082, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,087+0000 INFO GetFileHandler Handler(tag: 3082, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,087+0000 INFO GetFileHandler Handler(tag: 3082, GET) -> 199 +2013-08-27 01:14:03,087+0000 INFO GetFileHandler Handler(tag: 199, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,087+0000 INFO GetFileHandler Handler(tag: 199, GET) reader: LR-Handler(tag: 199, GET) +2013-08-27 01:14:03,087+0000 INFO GetFileHandler Handler(tag: 199, GET) sending length: 543, 1900896764 +2013-08-27 01:14:03,087+0000 INFO GetFileHandler Handler(tag: 3082, GET) sending length: 543, 257696129 +2013-08-27 01:14:03,087+0000 INFO ReadBuffer RB-LR-Handler(tag: 199, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,087+0000 INFO ReadBuffer RB-LR-Handler(tag: 199, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,087+0000 INFO LocalIOProvider LR-Handler(tag: 199, GET) rbuf: RB-LR-Handler(tag: 199, GET) +2013-08-27 01:14:03,087+0000 INFO GetFileHandler Handler(tag: 199, GET) unregistering (last) +2013-08-27 01:14:03,087+0000 INFO ReadBuffer RB-LR-Handler(tag: 199, GET) de-allocating 1 buffers +2013-08-27 01:14:03,087+0000 INFO GetFileHandler Handler(tag: 3082, GET) unregistering (last) +2013-08-27 01:14:03,089+0000 INFO GetFileHandler Handler(tag: 3083, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,089+0000 INFO GetFileHandler Handler(tag: 3083, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,089+0000 INFO GetFileHandler Handler(tag: 3083, GET) -> 200 +2013-08-27 01:14:03,089+0000 INFO GetFileHandler Handler(tag: 200, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,089+0000 INFO GetFileHandler Handler(tag: 200, GET) reader: LR-Handler(tag: 200, GET) +2013-08-27 01:14:03,089+0000 INFO GetFileHandler Handler(tag: 200, GET) sending length: 543, 1587291032 +2013-08-27 01:14:03,089+0000 INFO GetFileHandler Handler(tag: 3083, GET) sending length: 543, 1558511790 +2013-08-27 01:14:03,089+0000 INFO ReadBuffer RB-LR-Handler(tag: 200, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,089+0000 INFO ReadBuffer RB-LR-Handler(tag: 200, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,089+0000 INFO LocalIOProvider LR-Handler(tag: 200, GET) rbuf: RB-LR-Handler(tag: 200, GET) +2013-08-27 01:14:03,089+0000 INFO GetFileHandler Handler(tag: 200, GET) unregistering (last) +2013-08-27 01:14:03,089+0000 INFO ReadBuffer RB-LR-Handler(tag: 200, GET) de-allocating 1 buffers +2013-08-27 01:14:03,089+0000 INFO GetFileHandler Handler(tag: 3083, GET) unregistering (last) +2013-08-27 01:14:03,091+0000 INFO GetFileHandler Handler(tag: 3084, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,091+0000 INFO GetFileHandler Handler(tag: 3084, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,091+0000 INFO GetFileHandler Handler(tag: 3084, GET) -> 201 +2013-08-27 01:14:03,091+0000 INFO GetFileHandler Handler(tag: 201, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,092+0000 INFO GetFileHandler Handler(tag: 201, GET) reader: LR-Handler(tag: 201, GET) +2013-08-27 01:14:03,092+0000 INFO GetFileHandler Handler(tag: 201, GET) sending length: 543, 1787983760 +2013-08-27 01:14:03,092+0000 INFO GetFileHandler Handler(tag: 3084, GET) sending length: 543, 904381849 +2013-08-27 01:14:03,092+0000 INFO ReadBuffer RB-LR-Handler(tag: 201, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,092+0000 INFO ReadBuffer RB-LR-Handler(tag: 201, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,092+0000 INFO LocalIOProvider LR-Handler(tag: 201, GET) rbuf: RB-LR-Handler(tag: 201, GET) +2013-08-27 01:14:03,092+0000 INFO GetFileHandler Handler(tag: 201, GET) unregistering (last) +2013-08-27 01:14:03,092+0000 INFO GetFileHandler Handler(tag: 3084, GET) unregistering (last) +2013-08-27 01:14:03,092+0000 INFO ReadBuffer RB-LR-Handler(tag: 201, GET) de-allocating 1 buffers +2013-08-27 01:14:03,093+0000 INFO GetFileHandler Handler(tag: 3085, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,093+0000 INFO GetFileHandler Handler(tag: 3085, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,093+0000 INFO GetFileHandler Handler(tag: 3085, GET) -> 202 +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 202, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 202, GET) reader: LR-Handler(tag: 202, GET) +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 202, GET) sending length: 543, 758111104 +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 3085, GET) sending length: 543, 552847277 +2013-08-27 01:14:03,094+0000 INFO ReadBuffer RB-LR-Handler(tag: 202, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,094+0000 INFO ReadBuffer RB-LR-Handler(tag: 202, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,094+0000 INFO LocalIOProvider LR-Handler(tag: 202, GET) rbuf: RB-LR-Handler(tag: 202, GET) +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 202, GET) unregistering (last) +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 3086, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,094+0000 INFO ReadBuffer RB-LR-Handler(tag: 202, GET) de-allocating 1 buffers +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 3085, GET) unregistering (last) +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 3086, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 3086, GET) -> 203 +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 203, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 203, GET) reader: LR-Handler(tag: 203, GET) +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 203, GET) sending length: 2093, 1026776958 +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 3086, GET) sending length: 2093, 2009229461 +2013-08-27 01:14:03,094+0000 INFO ReadBuffer RB-LR-Handler(tag: 203, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,094+0000 INFO ReadBuffer RB-LR-Handler(tag: 203, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,094+0000 INFO LocalIOProvider LR-Handler(tag: 203, GET) rbuf: RB-LR-Handler(tag: 203, GET) +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 3087, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 203, GET) unregistering (last) +2013-08-27 01:14:03,094+0000 INFO ReadBuffer RB-LR-Handler(tag: 203, GET) de-allocating 1 buffers +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 3086, GET) unregistering (last) +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 3087, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 3087, GET) -> 204 +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 204, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 204, GET) reader: LR-Handler(tag: 204, GET) +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 204, GET) sending length: 5032, 567175767 +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 3087, GET) sending length: 5032, 1990690583 +2013-08-27 01:14:03,094+0000 INFO ReadBuffer RB-LR-Handler(tag: 204, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,094+0000 INFO ReadBuffer RB-LR-Handler(tag: 204, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,094+0000 INFO LocalIOProvider LR-Handler(tag: 204, GET) rbuf: RB-LR-Handler(tag: 204, GET) +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 204, GET) unregistering (last) +2013-08-27 01:14:03,094+0000 INFO ReadBuffer RB-LR-Handler(tag: 204, GET) de-allocating 1 buffers +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 3087, GET) unregistering (last) +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 3088, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 3088, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 3088, GET) -> 205 +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 205, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 205, GET) reader: LR-Handler(tag: 205, GET) +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 205, GET) sending length: 2093, 960635056 +2013-08-27 01:14:03,094+0000 INFO GetFileHandler Handler(tag: 3088, GET) sending length: 2093, 611328046 +2013-08-27 01:14:03,094+0000 INFO ReadBuffer RB-LR-Handler(tag: 205, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,094+0000 INFO ReadBuffer RB-LR-Handler(tag: 205, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,095+0000 INFO LocalIOProvider LR-Handler(tag: 205, GET) rbuf: RB-LR-Handler(tag: 205, GET) +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3089, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 205, GET) unregistering (last) +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3088, GET) unregistering (last) +2013-08-27 01:14:03,095+0000 INFO ReadBuffer RB-LR-Handler(tag: 205, GET) de-allocating 1 buffers +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3089, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3089, GET) -> 206 +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 206, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 206, GET) reader: LR-Handler(tag: 206, GET) +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 206, GET) sending length: 2093, 472445342 +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3089, GET) sending length: 2093, 1141820035 +2013-08-27 01:14:03,095+0000 INFO ReadBuffer RB-LR-Handler(tag: 206, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,095+0000 INFO ReadBuffer RB-LR-Handler(tag: 206, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,095+0000 INFO LocalIOProvider LR-Handler(tag: 206, GET) rbuf: RB-LR-Handler(tag: 206, GET) +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 206, GET) unregistering (last) +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3090, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,095+0000 INFO ReadBuffer RB-LR-Handler(tag: 206, GET) de-allocating 1 buffers +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3089, GET) unregistering (last) +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3090, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3090, GET) -> 207 +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 207, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 207, GET) reader: LR-Handler(tag: 207, GET) +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 207, GET) sending length: 2093, 1472287907 +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3090, GET) sending length: 2093, 1436272215 +2013-08-27 01:14:03,095+0000 INFO ReadBuffer RB-LR-Handler(tag: 207, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3091, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,095+0000 INFO ReadBuffer RB-LR-Handler(tag: 207, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,095+0000 INFO LocalIOProvider LR-Handler(tag: 207, GET) rbuf: RB-LR-Handler(tag: 207, GET) +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 207, GET) unregistering (last) +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3091, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,095+0000 INFO ReadBuffer RB-LR-Handler(tag: 207, GET) de-allocating 1 buffers +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3090, GET) unregistering (last) +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3091, GET) -> 208 +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 208, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 208, GET) reader: LR-Handler(tag: 208, GET) +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 208, GET) sending length: 2093, 338029290 +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3091, GET) sending length: 2093, 1164030715 +2013-08-27 01:14:03,095+0000 INFO ReadBuffer RB-LR-Handler(tag: 208, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,095+0000 INFO ReadBuffer RB-LR-Handler(tag: 208, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,095+0000 INFO LocalIOProvider LR-Handler(tag: 208, GET) rbuf: RB-LR-Handler(tag: 208, GET) +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 208, GET) unregistering (last) +2013-08-27 01:14:03,095+0000 INFO ReadBuffer RB-LR-Handler(tag: 208, GET) de-allocating 1 buffers +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3091, GET) unregistering (last) +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3092, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3092, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 3092, GET) -> 209 +2013-08-27 01:14:03,095+0000 INFO GetFileHandler Handler(tag: 209, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 209, GET) reader: LR-Handler(tag: 209, GET) +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 209, GET) sending length: 2093, 630205034 +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 3092, GET) sending length: 2093, 466659434 +2013-08-27 01:14:03,096+0000 INFO ReadBuffer RB-LR-Handler(tag: 209, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,096+0000 INFO ReadBuffer RB-LR-Handler(tag: 209, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,096+0000 INFO LocalIOProvider LR-Handler(tag: 209, GET) rbuf: RB-LR-Handler(tag: 209, GET) +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 209, GET) unregistering (last) +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 3093, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 3092, GET) unregistering (last) +2013-08-27 01:14:03,096+0000 INFO ReadBuffer RB-LR-Handler(tag: 209, GET) de-allocating 1 buffers +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 3093, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 3093, GET) -> 210 +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 210, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 210, GET) reader: LR-Handler(tag: 210, GET) +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 210, GET) sending length: 2093, 997520141 +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 3093, GET) sending length: 2093, 2063661305 +2013-08-27 01:14:03,096+0000 INFO ReadBuffer RB-LR-Handler(tag: 210, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,096+0000 INFO ReadBuffer RB-LR-Handler(tag: 210, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,096+0000 INFO LocalIOProvider LR-Handler(tag: 210, GET) rbuf: RB-LR-Handler(tag: 210, GET) +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 210, GET) unregistering (last) +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 3093, GET) unregistering (last) +2013-08-27 01:14:03,096+0000 INFO ReadBuffer RB-LR-Handler(tag: 210, GET) de-allocating 1 buffers +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 3094, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 3094, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 3094, GET) -> 211 +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 211, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 211, GET) reader: LR-Handler(tag: 211, GET) +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 211, GET) sending length: 5032, 1682698427 +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 3094, GET) sending length: 5032, 900315246 +2013-08-27 01:14:03,096+0000 INFO ReadBuffer RB-LR-Handler(tag: 211, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,096+0000 INFO ReadBuffer RB-LR-Handler(tag: 211, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,096+0000 INFO LocalIOProvider LR-Handler(tag: 211, GET) rbuf: RB-LR-Handler(tag: 211, GET) +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 211, GET) unregistering (last) +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 3095, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 3094, GET) unregistering (last) +2013-08-27 01:14:03,096+0000 INFO ReadBuffer RB-LR-Handler(tag: 211, GET) de-allocating 1 buffers +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 3095, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 3095, GET) -> 212 +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 212, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 212, GET) reader: LR-Handler(tag: 212, GET) +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 212, GET) sending length: 2093, 883641278 +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 3095, GET) sending length: 2093, 1509540341 +2013-08-27 01:14:03,096+0000 INFO ReadBuffer RB-LR-Handler(tag: 212, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,096+0000 INFO ReadBuffer RB-LR-Handler(tag: 212, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,096+0000 INFO LocalIOProvider LR-Handler(tag: 212, GET) rbuf: RB-LR-Handler(tag: 212, GET) +2013-08-27 01:14:03,096+0000 INFO GetFileHandler Handler(tag: 212, GET) unregistering (last) +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3095, GET) unregistering (last) +2013-08-27 01:14:03,097+0000 INFO ReadBuffer RB-LR-Handler(tag: 212, GET) de-allocating 1 buffers +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3096, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3096, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3096, GET) -> 213 +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 213, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 213, GET) reader: LR-Handler(tag: 213, GET) +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 213, GET) sending length: 5032, 1166982606 +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3096, GET) sending length: 5032, 508510991 +2013-08-27 01:14:03,097+0000 INFO ReadBuffer RB-LR-Handler(tag: 213, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,097+0000 INFO ReadBuffer RB-LR-Handler(tag: 213, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,097+0000 INFO LocalIOProvider LR-Handler(tag: 213, GET) rbuf: RB-LR-Handler(tag: 213, GET) +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 213, GET) unregistering (last) +2013-08-27 01:14:03,097+0000 INFO ReadBuffer RB-LR-Handler(tag: 213, GET) de-allocating 1 buffers +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3096, GET) unregistering (last) +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3097, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3097, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3097, GET) -> 214 +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 214, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 214, GET) reader: LR-Handler(tag: 214, GET) +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 214, GET) sending length: 2093, 1865721865 +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3097, GET) sending length: 2093, 1778655208 +2013-08-27 01:14:03,097+0000 INFO ReadBuffer RB-LR-Handler(tag: 214, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,097+0000 INFO ReadBuffer RB-LR-Handler(tag: 214, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,097+0000 INFO LocalIOProvider LR-Handler(tag: 214, GET) rbuf: RB-LR-Handler(tag: 214, GET) +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3098, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 214, GET) unregistering (last) +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3097, GET) unregistering (last) +2013-08-27 01:14:03,097+0000 INFO ReadBuffer RB-LR-Handler(tag: 214, GET) de-allocating 1 buffers +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3098, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3098, GET) -> 215 +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 215, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 215, GET) reader: LR-Handler(tag: 215, GET) +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 215, GET) sending length: 2093, 1019898453 +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3098, GET) sending length: 2093, 218829217 +2013-08-27 01:14:03,097+0000 INFO ReadBuffer RB-LR-Handler(tag: 215, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,097+0000 INFO ReadBuffer RB-LR-Handler(tag: 215, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,097+0000 INFO LocalIOProvider LR-Handler(tag: 215, GET) rbuf: RB-LR-Handler(tag: 215, GET) +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 215, GET) unregistering (last) +2013-08-27 01:14:03,097+0000 INFO ReadBuffer RB-LR-Handler(tag: 215, GET) de-allocating 1 buffers +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3098, GET) unregistering (last) +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3099, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3099, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,097+0000 INFO GetFileHandler Handler(tag: 3099, GET) -> 216 +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 216, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 216, GET) reader: LR-Handler(tag: 216, GET) +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 216, GET) sending length: 2093, 872217871 +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 3099, GET) sending length: 2093, 642383475 +2013-08-27 01:14:03,098+0000 INFO ReadBuffer RB-LR-Handler(tag: 216, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 3100, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,098+0000 INFO ReadBuffer RB-LR-Handler(tag: 216, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,098+0000 INFO LocalIOProvider LR-Handler(tag: 216, GET) rbuf: RB-LR-Handler(tag: 216, GET) +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 216, GET) unregistering (last) +2013-08-27 01:14:03,098+0000 INFO ReadBuffer RB-LR-Handler(tag: 216, GET) de-allocating 1 buffers +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 3099, GET) unregistering (last) +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 3100, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 3100, GET) -> 217 +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 217, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 217, GET) reader: LR-Handler(tag: 217, GET) +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 217, GET) sending length: 2093, 719362507 +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 3100, GET) sending length: 2093, 2140206186 +2013-08-27 01:14:03,098+0000 INFO ReadBuffer RB-LR-Handler(tag: 217, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,098+0000 INFO ReadBuffer RB-LR-Handler(tag: 217, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,098+0000 INFO LocalIOProvider LR-Handler(tag: 217, GET) rbuf: RB-LR-Handler(tag: 217, GET) +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 3101, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 217, GET) unregistering (last) +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 3100, GET) unregistering (last) +2013-08-27 01:14:03,098+0000 INFO ReadBuffer RB-LR-Handler(tag: 217, GET) de-allocating 1 buffers +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 3101, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 3101, GET) -> 218 +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 218, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 218, GET) reader: LR-Handler(tag: 218, GET) +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 218, GET) sending length: 2093, 445936141 +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 3101, GET) sending length: 2093, 130793757 +2013-08-27 01:14:03,098+0000 INFO ReadBuffer RB-LR-Handler(tag: 218, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,098+0000 INFO ReadBuffer RB-LR-Handler(tag: 218, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,098+0000 INFO LocalIOProvider LR-Handler(tag: 218, GET) rbuf: RB-LR-Handler(tag: 218, GET) +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 3102, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 218, GET) unregistering (last) +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 3101, GET) unregistering (last) +2013-08-27 01:14:03,098+0000 INFO ReadBuffer RB-LR-Handler(tag: 218, GET) de-allocating 1 buffers +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 3102, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 3102, GET) -> 219 +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 219, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 219, GET) reader: LR-Handler(tag: 219, GET) +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 219, GET) sending length: 5032, 1261965694 +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 3102, GET) sending length: 5032, 1308921286 +2013-08-27 01:14:03,098+0000 INFO ReadBuffer RB-LR-Handler(tag: 219, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,098+0000 INFO ReadBuffer RB-LR-Handler(tag: 219, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,098+0000 INFO LocalIOProvider LR-Handler(tag: 219, GET) rbuf: RB-LR-Handler(tag: 219, GET) +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 3103, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,098+0000 INFO GetFileHandler Handler(tag: 219, GET) unregistering (last) +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 3102, GET) unregistering (last) +2013-08-27 01:14:03,099+0000 INFO ReadBuffer RB-LR-Handler(tag: 219, GET) de-allocating 1 buffers +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 3103, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 3103, GET) -> 220 +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 220, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 220, GET) reader: LR-Handler(tag: 220, GET) +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 220, GET) sending length: 6078, 1142899061 +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 3103, GET) sending length: 6078, 1610779459 +2013-08-27 01:14:03,099+0000 INFO ReadBuffer RB-LR-Handler(tag: 220, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,099+0000 INFO ReadBuffer RB-LR-Handler(tag: 220, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 3104, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,099+0000 INFO LocalIOProvider LR-Handler(tag: 220, GET) rbuf: RB-LR-Handler(tag: 220, GET) +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 220, GET) unregistering (last) +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 3104, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,099+0000 INFO ReadBuffer RB-LR-Handler(tag: 220, GET) de-allocating 1 buffers +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 3103, GET) unregistering (last) +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 3104, GET) -> 221 +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 221, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 221, GET) reader: LR-Handler(tag: 221, GET) +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 221, GET) sending length: 5032, 970015136 +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 3104, GET) sending length: 5032, 1496026375 +2013-08-27 01:14:03,099+0000 INFO ReadBuffer RB-LR-Handler(tag: 221, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,099+0000 INFO ReadBuffer RB-LR-Handler(tag: 221, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,099+0000 INFO LocalIOProvider LR-Handler(tag: 221, GET) rbuf: RB-LR-Handler(tag: 221, GET) +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 3105, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 221, GET) unregistering (last) +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 3104, GET) unregistering (last) +2013-08-27 01:14:03,099+0000 INFO ReadBuffer RB-LR-Handler(tag: 221, GET) de-allocating 1 buffers +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 3105, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 3105, GET) -> 222 +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 222, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 222, GET) reader: LR-Handler(tag: 222, GET) +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 222, GET) sending length: 5032, 1942381564 +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 3105, GET) sending length: 5032, 1708028101 +2013-08-27 01:14:03,099+0000 INFO ReadBuffer RB-LR-Handler(tag: 222, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,099+0000 INFO ReadBuffer RB-LR-Handler(tag: 222, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,099+0000 INFO LocalIOProvider LR-Handler(tag: 222, GET) rbuf: RB-LR-Handler(tag: 222, GET) +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 222, GET) unregistering (last) +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 3106, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 3105, GET) unregistering (last) +2013-08-27 01:14:03,099+0000 INFO ReadBuffer RB-LR-Handler(tag: 222, GET) de-allocating 1 buffers +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 3106, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 3106, GET) -> 223 +2013-08-27 01:14:03,099+0000 INFO GetFileHandler Handler(tag: 223, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 223, GET) reader: LR-Handler(tag: 223, GET) +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 223, GET) sending length: 5032, 1701072366 +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 3106, GET) sending length: 5032, 473462851 +2013-08-27 01:14:03,100+0000 INFO ReadBuffer RB-LR-Handler(tag: 223, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,100+0000 INFO ReadBuffer RB-LR-Handler(tag: 223, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,100+0000 INFO LocalIOProvider LR-Handler(tag: 223, GET) rbuf: RB-LR-Handler(tag: 223, GET) +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 223, GET) unregistering (last) +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 3107, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,100+0000 INFO ReadBuffer RB-LR-Handler(tag: 223, GET) de-allocating 1 buffers +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 3106, GET) unregistering (last) +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 3107, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 3107, GET) -> 224 +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 224, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 224, GET) reader: LR-Handler(tag: 224, GET) +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 224, GET) sending length: 5032, 310439165 +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 3107, GET) sending length: 5032, 1313267592 +2013-08-27 01:14:03,100+0000 INFO ReadBuffer RB-LR-Handler(tag: 224, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,100+0000 INFO ReadBuffer RB-LR-Handler(tag: 224, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 3108, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,100+0000 INFO LocalIOProvider LR-Handler(tag: 224, GET) rbuf: RB-LR-Handler(tag: 224, GET) +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 224, GET) unregistering (last) +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 3107, GET) unregistering (last) +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 3108, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,100+0000 INFO ReadBuffer RB-LR-Handler(tag: 224, GET) de-allocating 1 buffers +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 3108, GET) -> 225 +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 225, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 225, GET) reader: LR-Handler(tag: 225, GET) +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 225, GET) sending length: 5032, 690610498 +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 3108, GET) sending length: 5032, 2089011498 +2013-08-27 01:14:03,100+0000 INFO ReadBuffer RB-LR-Handler(tag: 225, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,100+0000 INFO ReadBuffer RB-LR-Handler(tag: 225, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,100+0000 INFO LocalIOProvider LR-Handler(tag: 225, GET) rbuf: RB-LR-Handler(tag: 225, GET) +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 225, GET) unregistering (last) +2013-08-27 01:14:03,100+0000 INFO ReadBuffer RB-LR-Handler(tag: 225, GET) de-allocating 1 buffers +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 3108, GET) unregistering (last) +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 3109, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 3109, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 3109, GET) -> 226 +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 226, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 226, GET) reader: LR-Handler(tag: 226, GET) +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 226, GET) sending length: 5032, 1528401192 +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 3109, GET) sending length: 5032, 1786932177 +2013-08-27 01:14:03,100+0000 INFO ReadBuffer RB-LR-Handler(tag: 226, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,100+0000 INFO ReadBuffer RB-LR-Handler(tag: 226, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,100+0000 INFO GetFileHandler Handler(tag: 3110, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,100+0000 INFO LocalIOProvider LR-Handler(tag: 226, GET) rbuf: RB-LR-Handler(tag: 226, GET) +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 226, GET) unregistering (last) +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 3109, GET) unregistering (last) +2013-08-27 01:14:03,101+0000 INFO ReadBuffer RB-LR-Handler(tag: 226, GET) de-allocating 1 buffers +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 3110, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 3110, GET) -> 227 +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 227, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 227, GET) reader: LR-Handler(tag: 227, GET) +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 227, GET) sending length: 6078, 1544698800 +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 3110, GET) sending length: 6078, 822923017 +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 3111, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,101+0000 INFO ReadBuffer RB-LR-Handler(tag: 227, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,101+0000 INFO ReadBuffer RB-LR-Handler(tag: 227, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,101+0000 INFO LocalIOProvider LR-Handler(tag: 227, GET) rbuf: RB-LR-Handler(tag: 227, GET) +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 3111, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 227, GET) unregistering (last) +2013-08-27 01:14:03,101+0000 INFO ReadBuffer RB-LR-Handler(tag: 227, GET) de-allocating 1 buffers +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 3110, GET) unregistering (last) +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 3111, GET) -> 228 +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 228, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 228, GET) reader: LR-Handler(tag: 228, GET) +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 228, GET) sending length: 5032, 794520776 +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 3111, GET) sending length: 5032, 457365186 +2013-08-27 01:14:03,101+0000 INFO ReadBuffer RB-LR-Handler(tag: 228, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 3112, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,101+0000 INFO ReadBuffer RB-LR-Handler(tag: 228, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,101+0000 INFO LocalIOProvider LR-Handler(tag: 228, GET) rbuf: RB-LR-Handler(tag: 228, GET) +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 228, GET) unregistering (last) +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 3111, GET) unregistering (last) +2013-08-27 01:14:03,101+0000 INFO ReadBuffer RB-LR-Handler(tag: 228, GET) de-allocating 1 buffers +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 3112, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 3112, GET) -> 229 +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 229, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 229, GET) reader: LR-Handler(tag: 229, GET) +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 229, GET) sending length: 6078, 1360909638 +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 3112, GET) sending length: 6078, 2107445316 +2013-08-27 01:14:03,101+0000 INFO ReadBuffer RB-LR-Handler(tag: 229, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,101+0000 INFO ReadBuffer RB-LR-Handler(tag: 229, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 3113, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,101+0000 INFO LocalIOProvider LR-Handler(tag: 229, GET) rbuf: RB-LR-Handler(tag: 229, GET) +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 229, GET) unregistering (last) +2013-08-27 01:14:03,101+0000 INFO ReadBuffer RB-LR-Handler(tag: 229, GET) de-allocating 1 buffers +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 3113, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 3112, GET) unregistering (last) +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 3113, GET) -> 230 +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 230, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,101+0000 INFO GetFileHandler Handler(tag: 230, GET) reader: LR-Handler(tag: 230, GET) +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 230, GET) sending length: 5032, 5445987 +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3113, GET) sending length: 5032, 1336390335 +2013-08-27 01:14:03,102+0000 INFO ReadBuffer RB-LR-Handler(tag: 230, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,102+0000 INFO ReadBuffer RB-LR-Handler(tag: 230, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3114, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,102+0000 INFO LocalIOProvider LR-Handler(tag: 230, GET) rbuf: RB-LR-Handler(tag: 230, GET) +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 230, GET) unregistering (last) +2013-08-27 01:14:03,102+0000 INFO ReadBuffer RB-LR-Handler(tag: 230, GET) de-allocating 1 buffers +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3113, GET) unregistering (last) +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3114, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3114, GET) -> 231 +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 231, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 231, GET) reader: LR-Handler(tag: 231, GET) +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 231, GET) sending length: 5032, 1894667608 +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3114, GET) sending length: 5032, 790969940 +2013-08-27 01:14:03,102+0000 INFO ReadBuffer RB-LR-Handler(tag: 231, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,102+0000 INFO ReadBuffer RB-LR-Handler(tag: 231, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,102+0000 INFO LocalIOProvider LR-Handler(tag: 231, GET) rbuf: RB-LR-Handler(tag: 231, GET) +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3115, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 231, GET) unregistering (last) +2013-08-27 01:14:03,102+0000 INFO ReadBuffer RB-LR-Handler(tag: 231, GET) de-allocating 1 buffers +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3114, GET) unregistering (last) +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3115, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3115, GET) -> 232 +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 232, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 232, GET) reader: LR-Handler(tag: 232, GET) +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 232, GET) sending length: 5032, 1739180957 +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3115, GET) sending length: 5032, 1014424982 +2013-08-27 01:14:03,102+0000 INFO ReadBuffer RB-LR-Handler(tag: 232, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,102+0000 INFO ReadBuffer RB-LR-Handler(tag: 232, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,102+0000 INFO LocalIOProvider LR-Handler(tag: 232, GET) rbuf: RB-LR-Handler(tag: 232, GET) +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3116, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 232, GET) unregistering (last) +2013-08-27 01:14:03,102+0000 INFO ReadBuffer RB-LR-Handler(tag: 232, GET) de-allocating 1 buffers +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3115, GET) unregistering (last) +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3116, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3116, GET) -> 233 +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 233, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 233, GET) reader: LR-Handler(tag: 233, GET) +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 233, GET) sending length: 5032, 476804695 +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3116, GET) sending length: 5032, 1395021908 +2013-08-27 01:14:03,102+0000 INFO ReadBuffer RB-LR-Handler(tag: 233, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,102+0000 INFO ReadBuffer RB-LR-Handler(tag: 233, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,102+0000 INFO LocalIOProvider LR-Handler(tag: 233, GET) rbuf: RB-LR-Handler(tag: 233, GET) +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3117, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 233, GET) unregistering (last) +2013-08-27 01:14:03,102+0000 INFO ReadBuffer RB-LR-Handler(tag: 233, GET) de-allocating 1 buffers +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3116, GET) unregistering (last) +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3117, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,102+0000 INFO GetFileHandler Handler(tag: 3117, GET) -> 234 +2013-08-27 01:14:03,103+0000 INFO GetFileHandler Handler(tag: 234, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,103+0000 INFO GetFileHandler Handler(tag: 234, GET) reader: LR-Handler(tag: 234, GET) +2013-08-27 01:14:03,103+0000 INFO GetFileHandler Handler(tag: 234, GET) sending length: 5032, 117281144 +2013-08-27 01:14:03,103+0000 INFO GetFileHandler Handler(tag: 3117, GET) sending length: 5032, 1901682909 +2013-08-27 01:14:03,103+0000 INFO ReadBuffer RB-LR-Handler(tag: 234, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,103+0000 INFO ReadBuffer RB-LR-Handler(tag: 234, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,103+0000 INFO LocalIOProvider LR-Handler(tag: 234, GET) rbuf: RB-LR-Handler(tag: 234, GET) +2013-08-27 01:14:03,103+0000 INFO GetFileHandler Handler(tag: 234, GET) unregistering (last) +2013-08-27 01:14:03,103+0000 INFO GetFileHandler Handler(tag: 3118, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,103+0000 INFO GetFileHandler Handler(tag: 3117, GET) unregistering (last) +2013-08-27 01:14:03,103+0000 INFO ReadBuffer RB-LR-Handler(tag: 234, GET) de-allocating 1 buffers +2013-08-27 01:14:03,103+0000 INFO GetFileHandler Handler(tag: 3118, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,103+0000 INFO GetFileHandler Handler(tag: 3118, GET) -> 235 +2013-08-27 01:14:03,103+0000 INFO GetFileHandler Handler(tag: 235, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,103+0000 INFO GetFileHandler Handler(tag: 235, GET) reader: LR-Handler(tag: 235, GET) +2013-08-27 01:14:03,103+0000 INFO GetFileHandler Handler(tag: 235, GET) sending length: 6078, 1850846567 +2013-08-27 01:14:03,103+0000 INFO GetFileHandler Handler(tag: 3118, GET) sending length: 6078, 877624774 +2013-08-27 01:14:03,103+0000 INFO ReadBuffer RB-LR-Handler(tag: 235, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,103+0000 INFO ReadBuffer RB-LR-Handler(tag: 235, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,103+0000 INFO LocalIOProvider LR-Handler(tag: 235, GET) rbuf: RB-LR-Handler(tag: 235, GET) +2013-08-27 01:14:03,103+0000 INFO GetFileHandler Handler(tag: 235, GET) unregistering (last) +2013-08-27 01:14:03,103+0000 INFO GetFileHandler Handler(tag: 3118, GET) unregistering (last) +2013-08-27 01:14:03,103+0000 INFO ReadBuffer RB-LR-Handler(tag: 235, GET) de-allocating 1 buffers +2013-08-27 01:14:03,104+0000 DEBUG Cpu Active workerid=0827-1301520-000000:000000 +2013-08-27 01:14:03,104+0000 INFO RequestHandler Handler(tag: 3119, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,104+0000 INFO RequestHandler Handler(tag: 236, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,104+0000 INFO GetFileHandler Handler(tag: 3120, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,104+0000 INFO GetFileHandler Handler(tag: 3120, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,104+0000 INFO GetFileHandler Handler(tag: 3120, GET) -> 237 +2013-08-27 01:14:03,104+0000 INFO GetFileHandler Handler(tag: 237, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,104+0000 INFO GetFileHandler Handler(tag: 237, GET) reader: LR-Handler(tag: 237, GET) +2013-08-27 01:14:03,104+0000 INFO GetFileHandler Handler(tag: 237, GET) sending length: 6078, 705361098 +2013-08-27 01:14:03,104+0000 INFO GetFileHandler Handler(tag: 3120, GET) sending length: 6078, 894242646 +2013-08-27 01:14:03,104+0000 INFO ReadBuffer RB-LR-Handler(tag: 237, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,104+0000 INFO ReadBuffer RB-LR-Handler(tag: 237, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,104+0000 INFO LocalIOProvider LR-Handler(tag: 237, GET) rbuf: RB-LR-Handler(tag: 237, GET) +2013-08-27 01:14:03,104+0000 INFO GetFileHandler Handler(tag: 3121, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,104+0000 INFO GetFileHandler Handler(tag: 237, GET) unregistering (last) +2013-08-27 01:14:03,104+0000 INFO GetFileHandler Handler(tag: 3120, GET) unregistering (last) +2013-08-27 01:14:03,104+0000 INFO ReadBuffer RB-LR-Handler(tag: 237, GET) de-allocating 1 buffers +2013-08-27 01:14:03,104+0000 INFO GetFileHandler Handler(tag: 3121, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,104+0000 INFO GetFileHandler Handler(tag: 3121, GET) -> 238 +2013-08-27 01:14:03,104+0000 INFO GetFileHandler Handler(tag: 238, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 238, GET) reader: LR-Handler(tag: 238, GET) +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 238, GET) sending length: 6078, 183756732 +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3122, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,105+0000 INFO ReadBuffer RB-LR-Handler(tag: 238, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3121, GET) sending length: 6078, 317910338 +2013-08-27 01:14:03,105+0000 INFO ReadBuffer RB-LR-Handler(tag: 238, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,105+0000 INFO LocalIOProvider LR-Handler(tag: 238, GET) rbuf: RB-LR-Handler(tag: 238, GET) +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3122, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 238, GET) unregistering (last) +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3122, GET) -> 239 +2013-08-27 01:14:03,105+0000 INFO ReadBuffer RB-LR-Handler(tag: 238, GET) de-allocating 1 buffers +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3121, GET) unregistering (last) +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 239, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 239, GET) reader: LR-Handler(tag: 239, GET) +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 239, GET) sending length: 6078, 1118901176 +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3122, GET) sending length: 6078, 2005251900 +2013-08-27 01:14:03,105+0000 INFO ReadBuffer RB-LR-Handler(tag: 239, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,105+0000 INFO ReadBuffer RB-LR-Handler(tag: 239, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,105+0000 INFO LocalIOProvider LR-Handler(tag: 239, GET) rbuf: RB-LR-Handler(tag: 239, GET) +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 239, GET) unregistering (last) +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3123, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,105+0000 INFO ReadBuffer RB-LR-Handler(tag: 239, GET) de-allocating 1 buffers +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3122, GET) unregistering (last) +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3123, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3123, GET) -> 240 +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 240, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 240, GET) reader: LR-Handler(tag: 240, GET) +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 240, GET) sending length: 6078, 168584795 +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3124, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3123, GET) sending length: 6078, 873719172 +2013-08-27 01:14:03,105+0000 INFO ReadBuffer RB-LR-Handler(tag: 240, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,105+0000 INFO ReadBuffer RB-LR-Handler(tag: 240, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3124, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,105+0000 INFO LocalIOProvider LR-Handler(tag: 240, GET) rbuf: RB-LR-Handler(tag: 240, GET) +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 240, GET) unregistering (last) +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3124, GET) -> 241 +2013-08-27 01:14:03,105+0000 INFO ReadBuffer RB-LR-Handler(tag: 240, GET) de-allocating 1 buffers +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3123, GET) unregistering (last) +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 241, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 241, GET) reader: LR-Handler(tag: 241, GET) +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 241, GET) sending length: 6078, 1160688957 +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3124, GET) sending length: 6078, 2105334598 +2013-08-27 01:14:03,105+0000 INFO ReadBuffer RB-LR-Handler(tag: 241, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,105+0000 INFO ReadBuffer RB-LR-Handler(tag: 241, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3125, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,105+0000 INFO LocalIOProvider LR-Handler(tag: 241, GET) rbuf: RB-LR-Handler(tag: 241, GET) +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 241, GET) unregistering (last) +2013-08-27 01:14:03,105+0000 INFO ReadBuffer RB-LR-Handler(tag: 241, GET) de-allocating 1 buffers +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3124, GET) unregistering (last) +2013-08-27 01:14:03,105+0000 INFO GetFileHandler Handler(tag: 3125, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,106+0000 INFO GetFileHandler Handler(tag: 3125, GET) -> 242 +2013-08-27 01:14:03,106+0000 INFO GetFileHandler Handler(tag: 242, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,106+0000 INFO GetFileHandler Handler(tag: 242, GET) reader: LR-Handler(tag: 242, GET) +2013-08-27 01:14:03,106+0000 INFO GetFileHandler Handler(tag: 242, GET) sending length: 6078, 1298625981 +2013-08-27 01:14:03,106+0000 INFO GetFileHandler Handler(tag: 3125, GET) sending length: 6078, 1130558206 +2013-08-27 01:14:03,106+0000 INFO ReadBuffer RB-LR-Handler(tag: 242, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,106+0000 INFO ReadBuffer RB-LR-Handler(tag: 242, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,106+0000 INFO LocalIOProvider LR-Handler(tag: 242, GET) rbuf: RB-LR-Handler(tag: 242, GET) +2013-08-27 01:14:03,106+0000 INFO GetFileHandler Handler(tag: 242, GET) unregistering (last) +2013-08-27 01:14:03,106+0000 INFO ReadBuffer RB-LR-Handler(tag: 242, GET) de-allocating 1 buffers +2013-08-27 01:14:03,106+0000 INFO GetFileHandler Handler(tag: 3125, GET) unregistering (last) +2013-08-27 01:14:03,106+0000 DEBUG Cpu Active workerid=0827-1301520-000000:000000 +2013-08-27 01:14:03,106+0000 INFO RequestHandler Handler(tag: 3126, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,106+0000 INFO RequestHandler Handler(tag: 243, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,107+0000 INFO GetFileHandler Handler(tag: 3127, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,107+0000 INFO GetFileHandler Handler(tag: 3127, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,107+0000 INFO GetFileHandler Handler(tag: 3127, GET) -> 244 +2013-08-27 01:14:03,107+0000 INFO GetFileHandler Handler(tag: 244, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,107+0000 INFO GetFileHandler Handler(tag: 244, GET) reader: LR-Handler(tag: 244, GET) +2013-08-27 01:14:03,107+0000 INFO GetFileHandler Handler(tag: 244, GET) sending length: 6078, 1894736744 +2013-08-27 01:14:03,107+0000 INFO GetFileHandler Handler(tag: 3127, GET) sending length: 6078, 1952938692 +2013-08-27 01:14:03,107+0000 INFO ReadBuffer RB-LR-Handler(tag: 244, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,107+0000 INFO ReadBuffer RB-LR-Handler(tag: 244, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,107+0000 INFO LocalIOProvider LR-Handler(tag: 244, GET) rbuf: RB-LR-Handler(tag: 244, GET) +2013-08-27 01:14:03,107+0000 INFO GetFileHandler Handler(tag: 244, GET) unregistering (last) +2013-08-27 01:14:03,107+0000 INFO ReadBuffer RB-LR-Handler(tag: 244, GET) de-allocating 1 buffers +2013-08-27 01:14:03,107+0000 INFO GetFileHandler Handler(tag: 3127, GET) unregistering (last) +2013-08-27 01:14:03,107+0000 DEBUG Cpu Active workerid=0827-1301520-000000:000000 +2013-08-27 01:14:03,107+0000 INFO RequestHandler Handler(tag: 3128, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,108+0000 INFO RequestHandler Handler(tag: 245, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 3129, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 3129, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 3129, GET) -> 246 +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 246, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 246, GET) reader: LR-Handler(tag: 246, GET) +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 246, GET) sending length: 6078, 2037886922 +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 3130, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 3129, GET) sending length: 6078, 548812051 +2013-08-27 01:14:03,108+0000 INFO ReadBuffer RB-LR-Handler(tag: 246, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,108+0000 INFO ReadBuffer RB-LR-Handler(tag: 246, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 3130, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,108+0000 INFO LocalIOProvider LR-Handler(tag: 246, GET) rbuf: RB-LR-Handler(tag: 246, GET) +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 246, GET) unregistering (last) +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 3130, GET) -> 247 +2013-08-27 01:14:03,108+0000 INFO ReadBuffer RB-LR-Handler(tag: 246, GET) de-allocating 1 buffers +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 3129, GET) unregistering (last) +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 247, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 247, GET) reader: LR-Handler(tag: 247, GET) +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 247, GET) sending length: 6078, 579340670 +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 3130, GET) sending length: 6078, 287785192 +2013-08-27 01:14:03,108+0000 INFO ReadBuffer RB-LR-Handler(tag: 247, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,108+0000 INFO ReadBuffer RB-LR-Handler(tag: 247, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,108+0000 INFO LocalIOProvider LR-Handler(tag: 247, GET) rbuf: RB-LR-Handler(tag: 247, GET) +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 3131, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 247, GET) unregistering (last) +2013-08-27 01:14:03,108+0000 INFO ReadBuffer RB-LR-Handler(tag: 247, GET) de-allocating 1 buffers +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 3130, GET) unregistering (last) +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 3131, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 3131, GET) -> 248 +2013-08-27 01:14:03,108+0000 INFO GetFileHandler Handler(tag: 248, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 248, GET) reader: LR-Handler(tag: 248, GET) +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 248, GET) sending length: 6078, 1524650473 +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 3132, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 3131, GET) sending length: 6078, 1025623707 +2013-08-27 01:14:03,109+0000 INFO ReadBuffer RB-LR-Handler(tag: 248, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,109+0000 INFO ReadBuffer RB-LR-Handler(tag: 248, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 3132, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,109+0000 INFO LocalIOProvider LR-Handler(tag: 248, GET) rbuf: RB-LR-Handler(tag: 248, GET) +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 248, GET) unregistering (last) +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 3132, GET) -> 249 +2013-08-27 01:14:03,109+0000 INFO ReadBuffer RB-LR-Handler(tag: 248, GET) de-allocating 1 buffers +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 3131, GET) unregistering (last) +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 249, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 249, GET) reader: LR-Handler(tag: 249, GET) +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 249, GET) sending length: 6078, 6051787 +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 3132, GET) sending length: 6078, 780652700 +2013-08-27 01:14:03,109+0000 INFO ReadBuffer RB-LR-Handler(tag: 249, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,109+0000 INFO ReadBuffer RB-LR-Handler(tag: 249, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,109+0000 INFO LocalIOProvider LR-Handler(tag: 249, GET) rbuf: RB-LR-Handler(tag: 249, GET) +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 249, GET) unregistering (last) +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 3133, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,109+0000 INFO ReadBuffer RB-LR-Handler(tag: 249, GET) de-allocating 1 buffers +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 3132, GET) unregistering (last) +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 3133, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 3133, GET) -> 250 +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 250, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 250, GET) reader: LR-Handler(tag: 250, GET) +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 250, GET) sending length: 6078, 767405246 +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 3133, GET) sending length: 6078, 2140669287 +2013-08-27 01:14:03,109+0000 INFO ReadBuffer RB-LR-Handler(tag: 250, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,109+0000 INFO ReadBuffer RB-LR-Handler(tag: 250, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,109+0000 INFO LocalIOProvider LR-Handler(tag: 250, GET) rbuf: RB-LR-Handler(tag: 250, GET) +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 250, GET) unregistering (last) +2013-08-27 01:14:03,109+0000 INFO ReadBuffer RB-LR-Handler(tag: 250, GET) de-allocating 1 buffers +2013-08-27 01:14:03,109+0000 INFO GetFileHandler Handler(tag: 3133, GET) unregistering (last) +2013-08-27 01:14:03,110+0000 DEBUG Cpu Active workerid=0827-1301520-000000:000000 +2013-08-27 01:14:03,110+0000 INFO RequestHandler Handler(tag: 3134, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,110+0000 INFO RequestHandler Handler(tag: 251, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,111+0000 DEBUG Cpu Active workerid=0827-1301520-000000:000000 +2013-08-27 01:14:03,111+0000 INFO RequestHandler Handler(tag: 3135, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,111+0000 INFO RequestHandler Handler(tag: 252, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,111+0000 DEBUG Cpu Active workerid=0827-1301520-000000:000000 +2013-08-27 01:14:03,111+0000 INFO RequestHandler Handler(tag: 3136, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,111+0000 INFO RequestHandler Handler(tag: 253, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,112+0000 DEBUG Cpu Active workerid=0827-1301520-000000:000000 +2013-08-27 01:14:03,112+0000 INFO RequestHandler Handler(tag: 3137, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,112+0000 INFO RequestHandler Handler(tag: 254, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,113+0000 DEBUG Cpu Active workerid=0827-1301520-000000:000000 +2013-08-27 01:14:03,113+0000 INFO RequestHandler Handler(tag: 3138, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,113+0000 INFO RequestHandler Handler(tag: 255, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,114+0000 DEBUG Cpu Active workerid=0827-1301520-000000:000000 +2013-08-27 01:14:03,114+0000 INFO RequestHandler Handler(tag: 3139, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,114+0000 INFO RequestHandler Handler(tag: 256, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,115+0000 DEBUG Cpu Active workerid=0827-1301520-000000:000000 +2013-08-27 01:14:03,115+0000 INFO RequestHandler Handler(tag: 3140, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,115+0000 INFO RequestHandler Handler(tag: 257, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,116+0000 DEBUG Cpu Active workerid=0827-1301520-000000:000000 +2013-08-27 01:14:03,116+0000 INFO RequestHandler Handler(tag: 3141, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,116+0000 INFO RequestHandler Handler(tag: 258, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,116+0000 DEBUG Cpu Active workerid=0827-1301520-000000:000000 +2013-08-27 01:14:03,116+0000 INFO RequestHandler Handler(tag: 3142, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,116+0000 INFO RequestHandler Handler(tag: 259, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,117+0000 DEBUG Cpu Active workerid=0827-1301520-000000:000000 +2013-08-27 01:14:03,117+0000 INFO RequestHandler Handler(tag: 3143, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,117+0000 INFO RequestHandler Handler(tag: 260, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,118+0000 DEBUG Cpu Active workerid=0827-1301520-000000:000000 +2013-08-27 01:14:03,118+0000 INFO RequestHandler Handler(tag: 3144, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,118+0000 INFO RequestHandler Handler(tag: 261, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,119+0000 DEBUG Cpu Active workerid=0827-1301520-000000:000000 +2013-08-27 01:14:03,119+0000 INFO RequestHandler Handler(tag: 3145, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,119+0000 INFO RequestHandler Handler(tag: 262, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,120+0000 DEBUG Cpu Active workerid=0827-1301520-000000:000000 +2013-08-27 01:14:03,120+0000 INFO RequestHandler Handler(tag: 3146, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,120+0000 INFO RequestHandler Handler(tag: 263, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,294+0000 INFO GetFileHandler Handler(tag: 2586, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,295+0000 INFO GetFileHandler Handler(tag: 2586, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,295+0000 INFO GetFileHandler Handler(tag: 2586, GET) -> 264 +2013-08-27 01:14:03,295+0000 INFO GetFileHandler Handler(tag: 264, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,295+0000 INFO GetFileHandler Handler(tag: 264, GET) reader: LR-Handler(tag: 264, GET) +2013-08-27 01:14:03,295+0000 INFO GetFileHandler Handler(tag: 264, GET) sending length: 148937, 1691809533 +2013-08-27 01:14:03,295+0000 INFO ReadBuffer RB-LR-Handler(tag: 264, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,295+0000 INFO GetFileHandler Handler(tag: 2586, GET) sending length: 148937, 1997896416 +2013-08-27 01:14:03,295+0000 INFO ReadBuffer RB-LR-Handler(tag: 264, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,295+0000 INFO LocalIOProvider LR-Handler(tag: 264, GET) rbuf: RB-LR-Handler(tag: 264, GET) +2013-08-27 01:14:03,295+0000 INFO GetFileHandler Handler(tag: 264, GET) unregistering (last) +2013-08-27 01:14:03,295+0000 INFO GetFileHandler Handler(tag: 2586, GET) unregistering (last) +2013-08-27 01:14:03,295+0000 INFO ReadBuffer RB-LR-Handler(tag: 264, GET) de-allocating 5 buffers +2013-08-27 01:14:03,295+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,295+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,295+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,295+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,341+0000 INFO GetFileHandler Handler(tag: 2587, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,341+0000 INFO GetFileHandler Handler(tag: 2587, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,341+0000 INFO GetFileHandler Handler(tag: 2587, GET) -> 265 +2013-08-27 01:14:03,341+0000 INFO GetFileHandler Handler(tag: 265, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,341+0000 INFO GetFileHandler Handler(tag: 265, GET) reader: LR-Handler(tag: 265, GET) +2013-08-27 01:14:03,341+0000 INFO GetFileHandler Handler(tag: 265, GET) sending length: 148937, 1073310459 +2013-08-27 01:14:03,341+0000 INFO GetFileHandler Handler(tag: 2587, GET) sending length: 148937, 266249613 +2013-08-27 01:14:03,341+0000 INFO ReadBuffer RB-LR-Handler(tag: 265, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,341+0000 INFO ReadBuffer RB-LR-Handler(tag: 265, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,341+0000 INFO LocalIOProvider LR-Handler(tag: 265, GET) rbuf: RB-LR-Handler(tag: 265, GET) +2013-08-27 01:14:03,341+0000 INFO GetFileHandler Handler(tag: 265, GET) unregistering (last) +2013-08-27 01:14:03,341+0000 INFO ReadBuffer RB-LR-Handler(tag: 265, GET) de-allocating 5 buffers +2013-08-27 01:14:03,341+0000 INFO GetFileHandler Handler(tag: 2587, GET) unregistering (last) +2013-08-27 01:14:03,341+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,341+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,341+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,380+0000 INFO GetFileHandler Handler(tag: 2588, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,380+0000 INFO GetFileHandler Handler(tag: 2588, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,380+0000 INFO GetFileHandler Handler(tag: 2588, GET) -> 266 +2013-08-27 01:14:03,381+0000 INFO GetFileHandler Handler(tag: 266, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,381+0000 INFO GetFileHandler Handler(tag: 266, GET) reader: LR-Handler(tag: 266, GET) +2013-08-27 01:14:03,381+0000 INFO GetFileHandler Handler(tag: 266, GET) sending length: 148937, 1321063021 +2013-08-27 01:14:03,381+0000 INFO GetFileHandler Handler(tag: 2588, GET) sending length: 148937, 272767614 +2013-08-27 01:14:03,381+0000 INFO ReadBuffer RB-LR-Handler(tag: 266, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,381+0000 INFO ReadBuffer RB-LR-Handler(tag: 266, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,381+0000 INFO LocalIOProvider LR-Handler(tag: 266, GET) rbuf: RB-LR-Handler(tag: 266, GET) +2013-08-27 01:14:03,381+0000 INFO ThrottleManager I maxBuffers=1024, crtBuffers=5, allowedTransfers=252, active=0, suspended=0 +2013-08-27 01:14:03,381+0000 INFO ThrottleManager O maxBuffers=1024, crtBuffers=1, allowedTransfers=255, active=0, suspended=0 +2013-08-27 01:14:03,381+0000 INFO GetFileHandler Handler(tag: 266, GET) unregistering (last) +2013-08-27 01:14:03,381+0000 INFO ReadBuffer RB-LR-Handler(tag: 266, GET) de-allocating 5 buffers +2013-08-27 01:14:03,381+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,381+0000 INFO ThrottleManager mem=223.81 MB, heap=399.94 MB, maxHeap=910.25 MB +2013-08-27 01:14:03,381+0000 INFO GetFileHandler Handler(tag: 2588, GET) unregistering (last) +2013-08-27 01:14:03,399+0000 INFO GetFileHandler Handler(tag: 2589, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,399+0000 INFO GetFileHandler Handler(tag: 2589, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,399+0000 INFO GetFileHandler Handler(tag: 2589, GET) -> 267 +2013-08-27 01:14:03,400+0000 INFO GetFileHandler Handler(tag: 267, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,400+0000 INFO GetFileHandler Handler(tag: 267, GET) reader: LR-Handler(tag: 267, GET) +2013-08-27 01:14:03,400+0000 INFO GetFileHandler Handler(tag: 267, GET) sending length: 148937, 357102764 +2013-08-27 01:14:03,400+0000 INFO GetFileHandler Handler(tag: 2589, GET) sending length: 148937, 1756844830 +2013-08-27 01:14:03,400+0000 INFO ReadBuffer RB-LR-Handler(tag: 267, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,400+0000 INFO ReadBuffer RB-LR-Handler(tag: 267, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,400+0000 INFO LocalIOProvider LR-Handler(tag: 267, GET) rbuf: RB-LR-Handler(tag: 267, GET) +2013-08-27 01:14:03,400+0000 INFO GetFileHandler Handler(tag: 267, GET) unregistering (last) +2013-08-27 01:14:03,400+0000 INFO GetFileHandler Handler(tag: 2589, GET) unregistering (last) +2013-08-27 01:14:03,400+0000 INFO ReadBuffer RB-LR-Handler(tag: 267, GET) de-allocating 5 buffers +2013-08-27 01:14:03,400+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,400+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,400+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,414+0000 INFO GetFileHandler Handler(tag: 2590, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,414+0000 INFO GetFileHandler Handler(tag: 2590, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,414+0000 INFO GetFileHandler Handler(tag: 2590, GET) -> 268 +2013-08-27 01:14:03,414+0000 INFO GetFileHandler Handler(tag: 268, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,414+0000 INFO GetFileHandler Handler(tag: 268, GET) reader: LR-Handler(tag: 268, GET) +2013-08-27 01:14:03,414+0000 INFO GetFileHandler Handler(tag: 268, GET) sending length: 148937, 1376434098 +2013-08-27 01:14:03,414+0000 INFO GetFileHandler Handler(tag: 2590, GET) sending length: 148937, 1034039602 +2013-08-27 01:14:03,414+0000 INFO ReadBuffer RB-LR-Handler(tag: 268, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,414+0000 INFO ReadBuffer RB-LR-Handler(tag: 268, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,414+0000 INFO LocalIOProvider LR-Handler(tag: 268, GET) rbuf: RB-LR-Handler(tag: 268, GET) +2013-08-27 01:14:03,415+0000 INFO GetFileHandler Handler(tag: 268, GET) unregistering (last) +2013-08-27 01:14:03,415+0000 INFO GetFileHandler Handler(tag: 2590, GET) unregistering (last) +2013-08-27 01:14:03,415+0000 INFO ReadBuffer RB-LR-Handler(tag: 268, GET) de-allocating 5 buffers +2013-08-27 01:14:03,415+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,415+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,415+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,422+0000 INFO GetFileHandler Handler(tag: 2591, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,422+0000 INFO GetFileHandler Handler(tag: 2591, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,422+0000 INFO GetFileHandler Handler(tag: 2591, GET) -> 269 +2013-08-27 01:14:03,422+0000 INFO GetFileHandler Handler(tag: 269, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,422+0000 INFO GetFileHandler Handler(tag: 269, GET) reader: LR-Handler(tag: 269, GET) +2013-08-27 01:14:03,422+0000 INFO GetFileHandler Handler(tag: 269, GET) sending length: 148937, 284152826 +2013-08-27 01:14:03,422+0000 INFO GetFileHandler Handler(tag: 2591, GET) sending length: 148937, 1900399301 +2013-08-27 01:14:03,422+0000 INFO ReadBuffer RB-LR-Handler(tag: 269, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,422+0000 INFO ReadBuffer RB-LR-Handler(tag: 269, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,422+0000 INFO LocalIOProvider LR-Handler(tag: 269, GET) rbuf: RB-LR-Handler(tag: 269, GET) +2013-08-27 01:14:03,422+0000 INFO GetFileHandler Handler(tag: 269, GET) unregistering (last) +2013-08-27 01:14:03,422+0000 INFO GetFileHandler Handler(tag: 2591, GET) unregistering (last) +2013-08-27 01:14:03,422+0000 INFO ReadBuffer RB-LR-Handler(tag: 269, GET) de-allocating 5 buffers +2013-08-27 01:14:03,422+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,422+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,422+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,428+0000 INFO GetFileHandler Handler(tag: 2592, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,428+0000 INFO GetFileHandler Handler(tag: 2592, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,428+0000 INFO GetFileHandler Handler(tag: 2592, GET) -> 270 +2013-08-27 01:14:03,428+0000 INFO GetFileHandler Handler(tag: 270, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,428+0000 INFO GetFileHandler Handler(tag: 270, GET) reader: LR-Handler(tag: 270, GET) +2013-08-27 01:14:03,428+0000 INFO GetFileHandler Handler(tag: 270, GET) sending length: 148937, 1232199135 +2013-08-27 01:14:03,428+0000 INFO GetFileHandler Handler(tag: 2592, GET) sending length: 148937, 1386053924 +2013-08-27 01:14:03,428+0000 INFO ReadBuffer RB-LR-Handler(tag: 270, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,428+0000 INFO ReadBuffer RB-LR-Handler(tag: 270, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,428+0000 INFO LocalIOProvider LR-Handler(tag: 270, GET) rbuf: RB-LR-Handler(tag: 270, GET) +2013-08-27 01:14:03,428+0000 INFO GetFileHandler Handler(tag: 270, GET) unregistering (last) +2013-08-27 01:14:03,428+0000 INFO ReadBuffer RB-LR-Handler(tag: 270, GET) de-allocating 5 buffers +2013-08-27 01:14:03,428+0000 INFO GetFileHandler Handler(tag: 2592, GET) unregistering (last) +2013-08-27 01:14:03,428+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,428+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,428+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,428+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,435+0000 INFO GetFileHandler Handler(tag: 2593, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,435+0000 INFO GetFileHandler Handler(tag: 2593, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,436+0000 INFO GetFileHandler Handler(tag: 2593, GET) -> 271 +2013-08-27 01:14:03,436+0000 INFO GetFileHandler Handler(tag: 271, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,436+0000 INFO GetFileHandler Handler(tag: 271, GET) reader: LR-Handler(tag: 271, GET) +2013-08-27 01:14:03,436+0000 INFO GetFileHandler Handler(tag: 271, GET) sending length: 148937, 2134119327 +2013-08-27 01:14:03,436+0000 INFO GetFileHandler Handler(tag: 2593, GET) sending length: 148937, 871656695 +2013-08-27 01:14:03,436+0000 INFO ReadBuffer RB-LR-Handler(tag: 271, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,436+0000 INFO ReadBuffer RB-LR-Handler(tag: 271, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,436+0000 INFO LocalIOProvider LR-Handler(tag: 271, GET) rbuf: RB-LR-Handler(tag: 271, GET) +2013-08-27 01:14:03,436+0000 INFO GetFileHandler Handler(tag: 271, GET) unregistering (last) +2013-08-27 01:14:03,436+0000 INFO GetFileHandler Handler(tag: 2593, GET) unregistering (last) +2013-08-27 01:14:03,436+0000 INFO ReadBuffer RB-LR-Handler(tag: 271, GET) de-allocating 5 buffers +2013-08-27 01:14:03,436+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,436+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,436+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,436+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,439+0000 INFO GetFileHandler Handler(tag: 2594, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,439+0000 INFO GetFileHandler Handler(tag: 2594, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,439+0000 INFO GetFileHandler Handler(tag: 2594, GET) -> 272 +2013-08-27 01:14:03,439+0000 INFO GetFileHandler Handler(tag: 272, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,439+0000 INFO GetFileHandler Handler(tag: 272, GET) reader: LR-Handler(tag: 272, GET) +2013-08-27 01:14:03,439+0000 INFO GetFileHandler Handler(tag: 272, GET) sending length: 148937, 788065887 +2013-08-27 01:14:03,439+0000 INFO GetFileHandler Handler(tag: 2594, GET) sending length: 148937, 1491711760 +2013-08-27 01:14:03,439+0000 INFO ReadBuffer RB-LR-Handler(tag: 272, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,439+0000 INFO ReadBuffer RB-LR-Handler(tag: 272, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,439+0000 INFO LocalIOProvider LR-Handler(tag: 272, GET) rbuf: RB-LR-Handler(tag: 272, GET) +2013-08-27 01:14:03,439+0000 INFO GetFileHandler Handler(tag: 272, GET) unregistering (last) +2013-08-27 01:14:03,439+0000 INFO GetFileHandler Handler(tag: 2594, GET) unregistering (last) +2013-08-27 01:14:03,439+0000 INFO ReadBuffer RB-LR-Handler(tag: 272, GET) de-allocating 5 buffers +2013-08-27 01:14:03,439+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,439+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,439+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,439+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,440+0000 INFO GetFileHandler Handler(tag: 2595, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,440+0000 INFO GetFileHandler Handler(tag: 2595, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,440+0000 INFO GetFileHandler Handler(tag: 2595, GET) -> 273 +2013-08-27 01:14:03,440+0000 INFO GetFileHandler Handler(tag: 273, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,440+0000 INFO GetFileHandler Handler(tag: 273, GET) reader: LR-Handler(tag: 273, GET) +2013-08-27 01:14:03,440+0000 INFO GetFileHandler Handler(tag: 273, GET) sending length: 148937, 838473809 +2013-08-27 01:14:03,440+0000 INFO GetFileHandler Handler(tag: 2595, GET) sending length: 148937, 441616249 +2013-08-27 01:14:03,440+0000 INFO ReadBuffer RB-LR-Handler(tag: 273, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,440+0000 INFO ReadBuffer RB-LR-Handler(tag: 273, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,440+0000 INFO LocalIOProvider LR-Handler(tag: 273, GET) rbuf: RB-LR-Handler(tag: 273, GET) +2013-08-27 01:14:03,440+0000 INFO GetFileHandler Handler(tag: 273, GET) unregistering (last) +2013-08-27 01:14:03,440+0000 INFO GetFileHandler Handler(tag: 2595, GET) unregistering (last) +2013-08-27 01:14:03,440+0000 INFO ReadBuffer RB-LR-Handler(tag: 273, GET) de-allocating 5 buffers +2013-08-27 01:14:03,440+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,440+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,440+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,440+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,441+0000 INFO GetFileHandler Handler(tag: 2596, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,441+0000 INFO GetFileHandler Handler(tag: 2596, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,441+0000 INFO GetFileHandler Handler(tag: 2596, GET) -> 274 +2013-08-27 01:14:03,441+0000 INFO GetFileHandler Handler(tag: 274, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,441+0000 INFO GetFileHandler Handler(tag: 274, GET) reader: LR-Handler(tag: 274, GET) +2013-08-27 01:14:03,441+0000 INFO GetFileHandler Handler(tag: 274, GET) sending length: 148937, 2096061374 +2013-08-27 01:14:03,441+0000 INFO GetFileHandler Handler(tag: 2596, GET) sending length: 148937, 1181767430 +2013-08-27 01:14:03,441+0000 INFO ReadBuffer RB-LR-Handler(tag: 274, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,441+0000 INFO ReadBuffer RB-LR-Handler(tag: 274, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,441+0000 INFO LocalIOProvider LR-Handler(tag: 274, GET) rbuf: RB-LR-Handler(tag: 274, GET) +2013-08-27 01:14:03,441+0000 INFO GetFileHandler Handler(tag: 274, GET) unregistering (last) +2013-08-27 01:14:03,441+0000 INFO GetFileHandler Handler(tag: 2596, GET) unregistering (last) +2013-08-27 01:14:03,441+0000 INFO ReadBuffer RB-LR-Handler(tag: 274, GET) de-allocating 5 buffers +2013-08-27 01:14:03,441+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,441+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,441+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,442+0000 INFO GetFileHandler Handler(tag: 2597, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,442+0000 INFO GetFileHandler Handler(tag: 2597, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,442+0000 INFO GetFileHandler Handler(tag: 2597, GET) -> 275 +2013-08-27 01:14:03,442+0000 INFO GetFileHandler Handler(tag: 275, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,442+0000 INFO GetFileHandler Handler(tag: 275, GET) reader: LR-Handler(tag: 275, GET) +2013-08-27 01:14:03,442+0000 INFO GetFileHandler Handler(tag: 275, GET) sending length: 148937, 2028897604 +2013-08-27 01:14:03,442+0000 INFO GetFileHandler Handler(tag: 2597, GET) sending length: 148937, 1936683362 +2013-08-27 01:14:03,442+0000 INFO ReadBuffer RB-LR-Handler(tag: 275, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,442+0000 INFO ReadBuffer RB-LR-Handler(tag: 275, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,442+0000 INFO LocalIOProvider LR-Handler(tag: 275, GET) rbuf: RB-LR-Handler(tag: 275, GET) +2013-08-27 01:14:03,442+0000 INFO GetFileHandler Handler(tag: 275, GET) unregistering (last) +2013-08-27 01:14:03,442+0000 INFO GetFileHandler Handler(tag: 2597, GET) unregistering (last) +2013-08-27 01:14:03,442+0000 INFO ReadBuffer RB-LR-Handler(tag: 275, GET) de-allocating 5 buffers +2013-08-27 01:14:03,443+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,443+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,443+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,443+0000 INFO GetFileHandler Handler(tag: 2598, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,443+0000 INFO GetFileHandler Handler(tag: 2598, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,443+0000 INFO GetFileHandler Handler(tag: 2598, GET) -> 276 +2013-08-27 01:14:03,443+0000 INFO GetFileHandler Handler(tag: 276, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,443+0000 INFO GetFileHandler Handler(tag: 276, GET) reader: LR-Handler(tag: 276, GET) +2013-08-27 01:14:03,443+0000 INFO GetFileHandler Handler(tag: 276, GET) sending length: 148937, 1105636392 +2013-08-27 01:14:03,443+0000 INFO GetFileHandler Handler(tag: 2598, GET) sending length: 148937, 254842853 +2013-08-27 01:14:03,443+0000 INFO ReadBuffer RB-LR-Handler(tag: 276, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,443+0000 INFO ReadBuffer RB-LR-Handler(tag: 276, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,443+0000 INFO LocalIOProvider LR-Handler(tag: 276, GET) rbuf: RB-LR-Handler(tag: 276, GET) +2013-08-27 01:14:03,443+0000 INFO GetFileHandler Handler(tag: 276, GET) unregistering (last) +2013-08-27 01:14:03,443+0000 INFO GetFileHandler Handler(tag: 2598, GET) unregistering (last) +2013-08-27 01:14:03,443+0000 INFO ReadBuffer RB-LR-Handler(tag: 276, GET) de-allocating 5 buffers +2013-08-27 01:14:03,443+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,443+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,443+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,444+0000 INFO GetFileHandler Handler(tag: 2599, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,444+0000 INFO GetFileHandler Handler(tag: 2599, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,444+0000 INFO GetFileHandler Handler(tag: 2599, GET) -> 277 +2013-08-27 01:14:03,444+0000 INFO GetFileHandler Handler(tag: 277, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,444+0000 INFO GetFileHandler Handler(tag: 277, GET) reader: LR-Handler(tag: 277, GET) +2013-08-27 01:14:03,444+0000 INFO GetFileHandler Handler(tag: 277, GET) sending length: 148937, 1647217756 +2013-08-27 01:14:03,444+0000 INFO GetFileHandler Handler(tag: 2599, GET) sending length: 148937, 1577131615 +2013-08-27 01:14:03,444+0000 INFO ReadBuffer RB-LR-Handler(tag: 277, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,444+0000 INFO ReadBuffer RB-LR-Handler(tag: 277, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,444+0000 INFO LocalIOProvider LR-Handler(tag: 277, GET) rbuf: RB-LR-Handler(tag: 277, GET) +2013-08-27 01:14:03,445+0000 INFO GetFileHandler Handler(tag: 277, GET) unregistering (last) +2013-08-27 01:14:03,445+0000 INFO GetFileHandler Handler(tag: 2599, GET) unregistering (last) +2013-08-27 01:14:03,445+0000 INFO ReadBuffer RB-LR-Handler(tag: 277, GET) de-allocating 5 buffers +2013-08-27 01:14:03,445+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,445+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,445+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,445+0000 INFO GetFileHandler Handler(tag: 2600, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,445+0000 INFO GetFileHandler Handler(tag: 2600, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,445+0000 INFO GetFileHandler Handler(tag: 2600, GET) -> 278 +2013-08-27 01:14:03,445+0000 INFO GetFileHandler Handler(tag: 278, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,445+0000 INFO GetFileHandler Handler(tag: 278, GET) reader: LR-Handler(tag: 278, GET) +2013-08-27 01:14:03,445+0000 INFO GetFileHandler Handler(tag: 278, GET) sending length: 148937, 1200320659 +2013-08-27 01:14:03,445+0000 INFO GetFileHandler Handler(tag: 2600, GET) sending length: 148937, 327935895 +2013-08-27 01:14:03,445+0000 INFO ReadBuffer RB-LR-Handler(tag: 278, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,445+0000 INFO ReadBuffer RB-LR-Handler(tag: 278, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,445+0000 INFO LocalIOProvider LR-Handler(tag: 278, GET) rbuf: RB-LR-Handler(tag: 278, GET) +2013-08-27 01:14:03,446+0000 INFO GetFileHandler Handler(tag: 278, GET) unregistering (last) +2013-08-27 01:14:03,446+0000 INFO GetFileHandler Handler(tag: 2600, GET) unregistering (last) +2013-08-27 01:14:03,446+0000 INFO ReadBuffer RB-LR-Handler(tag: 278, GET) de-allocating 5 buffers +2013-08-27 01:14:03,446+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,446+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,446+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,446+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,446+0000 INFO GetFileHandler Handler(tag: 2601, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,446+0000 INFO GetFileHandler Handler(tag: 2601, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,446+0000 INFO GetFileHandler Handler(tag: 2601, GET) -> 279 +2013-08-27 01:14:03,446+0000 INFO GetFileHandler Handler(tag: 279, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,446+0000 INFO GetFileHandler Handler(tag: 279, GET) reader: LR-Handler(tag: 279, GET) +2013-08-27 01:14:03,446+0000 INFO GetFileHandler Handler(tag: 279, GET) sending length: 148937, 1776907850 +2013-08-27 01:14:03,446+0000 INFO GetFileHandler Handler(tag: 2601, GET) sending length: 148937, 1582639768 +2013-08-27 01:14:03,446+0000 INFO ReadBuffer RB-LR-Handler(tag: 279, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:03,446+0000 INFO ReadBuffer RB-LR-Handler(tag: 279, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:03,446+0000 INFO LocalIOProvider LR-Handler(tag: 279, GET) rbuf: RB-LR-Handler(tag: 279, GET) +2013-08-27 01:14:03,447+0000 INFO GetFileHandler Handler(tag: 279, GET) unregistering (last) +2013-08-27 01:14:03,447+0000 INFO GetFileHandler Handler(tag: 2601, GET) unregistering (last) +2013-08-27 01:14:03,447+0000 INFO ReadBuffer RB-LR-Handler(tag: 279, GET) de-allocating 5 buffers +2013-08-27 01:14:03,447+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,447+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,447+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:03,448+0000 INFO GetFileHandler Handler(tag: 2602, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,448+0000 INFO GetFileHandler Handler(tag: 2602, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,448+0000 INFO GetFileHandler Handler(tag: 2602, GET) -> 280 +2013-08-27 01:14:03,448+0000 INFO GetFileHandler Handler(tag: 280, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,448+0000 INFO GetFileHandler Handler(tag: 280, GET) reader: LR-Handler(tag: 280, GET) +2013-08-27 01:14:03,448+0000 INFO GetFileHandler Handler(tag: 280, GET) sending length: 543, 34352041 +2013-08-27 01:14:03,448+0000 INFO GetFileHandler Handler(tag: 2602, GET) sending length: 543, 1829135691 +2013-08-27 01:14:03,448+0000 INFO ReadBuffer RB-LR-Handler(tag: 280, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,448+0000 INFO ReadBuffer RB-LR-Handler(tag: 280, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,448+0000 INFO LocalIOProvider LR-Handler(tag: 280, GET) rbuf: RB-LR-Handler(tag: 280, GET) +2013-08-27 01:14:03,448+0000 INFO GetFileHandler Handler(tag: 280, GET) unregistering (last) +2013-08-27 01:14:03,448+0000 INFO ReadBuffer RB-LR-Handler(tag: 280, GET) de-allocating 1 buffers +2013-08-27 01:14:03,448+0000 INFO GetFileHandler Handler(tag: 2602, GET) unregistering (last) +2013-08-27 01:14:03,449+0000 INFO GetFileHandler Handler(tag: 2603, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,449+0000 INFO GetFileHandler Handler(tag: 2603, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,449+0000 INFO GetFileHandler Handler(tag: 2603, GET) -> 281 +2013-08-27 01:14:03,449+0000 INFO GetFileHandler Handler(tag: 281, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,449+0000 INFO GetFileHandler Handler(tag: 281, GET) reader: LR-Handler(tag: 281, GET) +2013-08-27 01:14:03,449+0000 INFO GetFileHandler Handler(tag: 281, GET) sending length: 543, 2031668134 +2013-08-27 01:14:03,449+0000 INFO GetFileHandler Handler(tag: 2603, GET) sending length: 543, 1256340838 +2013-08-27 01:14:03,449+0000 INFO ReadBuffer RB-LR-Handler(tag: 281, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,449+0000 INFO ReadBuffer RB-LR-Handler(tag: 281, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,449+0000 INFO LocalIOProvider LR-Handler(tag: 281, GET) rbuf: RB-LR-Handler(tag: 281, GET) +2013-08-27 01:14:03,449+0000 INFO GetFileHandler Handler(tag: 281, GET) unregistering (last) +2013-08-27 01:14:03,449+0000 INFO ReadBuffer RB-LR-Handler(tag: 281, GET) de-allocating 1 buffers +2013-08-27 01:14:03,449+0000 INFO GetFileHandler Handler(tag: 2603, GET) unregistering (last) +2013-08-27 01:14:03,450+0000 INFO GetFileHandler Handler(tag: 2604, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,450+0000 INFO GetFileHandler Handler(tag: 2604, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,450+0000 INFO GetFileHandler Handler(tag: 2604, GET) -> 282 +2013-08-27 01:14:03,450+0000 INFO GetFileHandler Handler(tag: 282, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,451+0000 INFO GetFileHandler Handler(tag: 282, GET) reader: LR-Handler(tag: 282, GET) +2013-08-27 01:14:03,451+0000 INFO GetFileHandler Handler(tag: 282, GET) sending length: 543, 1093820001 +2013-08-27 01:14:03,451+0000 INFO GetFileHandler Handler(tag: 2604, GET) sending length: 543, 1372738487 +2013-08-27 01:14:03,451+0000 INFO ReadBuffer RB-LR-Handler(tag: 282, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,451+0000 INFO ReadBuffer RB-LR-Handler(tag: 282, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,451+0000 INFO LocalIOProvider LR-Handler(tag: 282, GET) rbuf: RB-LR-Handler(tag: 282, GET) +2013-08-27 01:14:03,451+0000 INFO GetFileHandler Handler(tag: 282, GET) unregistering (last) +2013-08-27 01:14:03,451+0000 INFO ReadBuffer RB-LR-Handler(tag: 282, GET) de-allocating 1 buffers +2013-08-27 01:14:03,451+0000 INFO GetFileHandler Handler(tag: 2604, GET) unregistering (last) +2013-08-27 01:14:03,452+0000 INFO GetFileHandler Handler(tag: 2605, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,452+0000 INFO GetFileHandler Handler(tag: 2605, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,452+0000 INFO GetFileHandler Handler(tag: 2605, GET) -> 283 +2013-08-27 01:14:03,452+0000 INFO GetFileHandler Handler(tag: 283, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,452+0000 INFO GetFileHandler Handler(tag: 283, GET) reader: LR-Handler(tag: 283, GET) +2013-08-27 01:14:03,452+0000 INFO GetFileHandler Handler(tag: 283, GET) sending length: 543, 876927033 +2013-08-27 01:14:03,452+0000 INFO GetFileHandler Handler(tag: 2605, GET) sending length: 543, 332374270 +2013-08-27 01:14:03,452+0000 INFO ReadBuffer RB-LR-Handler(tag: 283, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,452+0000 INFO ReadBuffer RB-LR-Handler(tag: 283, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,452+0000 INFO LocalIOProvider LR-Handler(tag: 283, GET) rbuf: RB-LR-Handler(tag: 283, GET) +2013-08-27 01:14:03,452+0000 INFO GetFileHandler Handler(tag: 283, GET) unregistering (last) +2013-08-27 01:14:03,452+0000 INFO ReadBuffer RB-LR-Handler(tag: 283, GET) de-allocating 1 buffers +2013-08-27 01:14:03,452+0000 INFO GetFileHandler Handler(tag: 2605, GET) unregistering (last) +2013-08-27 01:14:03,453+0000 INFO GetFileHandler Handler(tag: 2606, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,453+0000 INFO GetFileHandler Handler(tag: 2606, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,453+0000 INFO GetFileHandler Handler(tag: 2606, GET) -> 284 +2013-08-27 01:14:03,453+0000 INFO GetFileHandler Handler(tag: 284, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,453+0000 INFO GetFileHandler Handler(tag: 284, GET) reader: LR-Handler(tag: 284, GET) +2013-08-27 01:14:03,453+0000 INFO GetFileHandler Handler(tag: 284, GET) sending length: 543, 1320243813 +2013-08-27 01:14:03,453+0000 INFO GetFileHandler Handler(tag: 2606, GET) sending length: 543, 1536724287 +2013-08-27 01:14:03,453+0000 INFO ReadBuffer RB-LR-Handler(tag: 284, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,453+0000 INFO ReadBuffer RB-LR-Handler(tag: 284, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,453+0000 INFO LocalIOProvider LR-Handler(tag: 284, GET) rbuf: RB-LR-Handler(tag: 284, GET) +2013-08-27 01:14:03,453+0000 INFO GetFileHandler Handler(tag: 284, GET) unregistering (last) +2013-08-27 01:14:03,453+0000 INFO ReadBuffer RB-LR-Handler(tag: 284, GET) de-allocating 1 buffers +2013-08-27 01:14:03,453+0000 INFO GetFileHandler Handler(tag: 2606, GET) unregistering (last) +2013-08-27 01:14:03,455+0000 INFO GetFileHandler Handler(tag: 2607, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,455+0000 INFO GetFileHandler Handler(tag: 2607, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,455+0000 INFO GetFileHandler Handler(tag: 2607, GET) -> 285 +2013-08-27 01:14:03,455+0000 INFO GetFileHandler Handler(tag: 285, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,455+0000 INFO GetFileHandler Handler(tag: 285, GET) reader: LR-Handler(tag: 285, GET) +2013-08-27 01:14:03,455+0000 INFO GetFileHandler Handler(tag: 285, GET) sending length: 543, 105603519 +2013-08-27 01:14:03,455+0000 INFO ReadBuffer RB-LR-Handler(tag: 285, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,455+0000 INFO ReadBuffer RB-LR-Handler(tag: 285, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,455+0000 INFO GetFileHandler Handler(tag: 2607, GET) sending length: 543, 664420340 +2013-08-27 01:14:03,455+0000 INFO LocalIOProvider LR-Handler(tag: 285, GET) rbuf: RB-LR-Handler(tag: 285, GET) +2013-08-27 01:14:03,461+0000 INFO GetFileHandler Handler(tag: 285, GET) unregistering (last) +2013-08-27 01:14:03,461+0000 INFO GetFileHandler Handler(tag: 2608, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,461+0000 INFO ReadBuffer RB-LR-Handler(tag: 285, GET) de-allocating 1 buffers +2013-08-27 01:14:03,461+0000 INFO GetFileHandler Handler(tag: 2607, GET) unregistering (last) +2013-08-27 01:14:03,462+0000 INFO GetFileHandler Handler(tag: 2608, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,462+0000 INFO GetFileHandler Handler(tag: 2608, GET) -> 286 +2013-08-27 01:14:03,462+0000 INFO GetFileHandler Handler(tag: 286, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,463+0000 INFO GetFileHandler Handler(tag: 2609, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,463+0000 INFO GetFileHandler Handler(tag: 2609, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,463+0000 INFO GetFileHandler Handler(tag: 286, GET) reader: LR-Handler(tag: 286, GET) +2013-08-27 01:14:03,463+0000 INFO GetFileHandler Handler(tag: 2609, GET) -> 287 +2013-08-27 01:14:03,463+0000 INFO GetFileHandler Handler(tag: 286, GET) sending length: 543, 1665051819 +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 2608, GET) sending length: 543, 1722468755 +2013-08-27 01:14:03,464+0000 INFO ReadBuffer RB-LR-Handler(tag: 286, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,464+0000 INFO ReadBuffer RB-LR-Handler(tag: 286, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,464+0000 INFO LocalIOProvider LR-Handler(tag: 286, GET) rbuf: RB-LR-Handler(tag: 286, GET) +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 2610, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 286, GET) unregistering (last) +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 287, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,464+0000 INFO ReadBuffer RB-LR-Handler(tag: 286, GET) de-allocating 1 buffers +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 2608, GET) unregistering (last) +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 2610, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 2610, GET) -> 288 +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 287, GET) reader: LR-Handler(tag: 287, GET) +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 287, GET) sending length: 543, 1671906019 +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 2611, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 2609, GET) sending length: 543, 2048423985 +2013-08-27 01:14:03,464+0000 INFO ReadBuffer RB-LR-Handler(tag: 287, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,464+0000 INFO ReadBuffer RB-LR-Handler(tag: 287, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 2611, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,464+0000 INFO LocalIOProvider LR-Handler(tag: 287, GET) rbuf: RB-LR-Handler(tag: 287, GET) +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 287, GET) unregistering (last) +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 2611, GET) -> 289 +2013-08-27 01:14:03,464+0000 INFO ReadBuffer RB-LR-Handler(tag: 287, GET) de-allocating 1 buffers +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 2609, GET) unregistering (last) +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 288, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 2612, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 288, GET) reader: LR-Handler(tag: 288, GET) +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 2612, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 288, GET) sending length: 543, 1153793061 +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 2612, GET) -> 290 +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 2610, GET) sending length: 543, 22643817 +2013-08-27 01:14:03,464+0000 INFO ReadBuffer RB-LR-Handler(tag: 288, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,464+0000 INFO ReadBuffer RB-LR-Handler(tag: 288, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,464+0000 INFO GetFileHandler Handler(tag: 2613, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,464+0000 INFO LocalIOProvider LR-Handler(tag: 288, GET) rbuf: RB-LR-Handler(tag: 288, GET) +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 288, GET) unregistering (last) +2013-08-27 01:14:03,465+0000 INFO ReadBuffer RB-LR-Handler(tag: 288, GET) de-allocating 1 buffers +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 2610, GET) unregistering (last) +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 2613, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 289, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 2613, GET) -> 291 +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 289, GET) reader: LR-Handler(tag: 289, GET) +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 289, GET) sending length: 543, 1777164509 +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 2614, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 2611, GET) sending length: 543, 1601340287 +2013-08-27 01:14:03,465+0000 INFO ReadBuffer RB-LR-Handler(tag: 289, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 2614, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,465+0000 INFO ReadBuffer RB-LR-Handler(tag: 289, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,465+0000 INFO LocalIOProvider LR-Handler(tag: 289, GET) rbuf: RB-LR-Handler(tag: 289, GET) +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 2614, GET) -> 292 +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 289, GET) unregistering (last) +2013-08-27 01:14:03,465+0000 INFO ReadBuffer RB-LR-Handler(tag: 289, GET) de-allocating 1 buffers +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 2611, GET) unregistering (last) +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 290, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 290, GET) reader: LR-Handler(tag: 290, GET) +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 290, GET) sending length: 543, 1850701830 +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 2612, GET) sending length: 543, 592513662 +2013-08-27 01:14:03,465+0000 INFO ReadBuffer RB-LR-Handler(tag: 290, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,465+0000 INFO ReadBuffer RB-LR-Handler(tag: 290, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,465+0000 INFO LocalIOProvider LR-Handler(tag: 290, GET) rbuf: RB-LR-Handler(tag: 290, GET) +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 290, GET) unregistering (last) +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 291, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,465+0000 INFO ReadBuffer RB-LR-Handler(tag: 290, GET) de-allocating 1 buffers +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 2612, GET) unregistering (last) +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 291, GET) reader: LR-Handler(tag: 291, GET) +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 291, GET) sending length: 543, 1788226358 +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 2613, GET) sending length: 543, 686759141 +2013-08-27 01:14:03,465+0000 INFO ReadBuffer RB-LR-Handler(tag: 291, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,465+0000 INFO ReadBuffer RB-LR-Handler(tag: 291, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,465+0000 INFO LocalIOProvider LR-Handler(tag: 291, GET) rbuf: RB-LR-Handler(tag: 291, GET) +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 291, GET) unregistering (last) +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 292, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,465+0000 INFO ReadBuffer RB-LR-Handler(tag: 291, GET) de-allocating 1 buffers +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 2613, GET) unregistering (last) +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 292, GET) reader: LR-Handler(tag: 292, GET) +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 292, GET) sending length: 543, 683166940 +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 2614, GET) sending length: 543, 1539183718 +2013-08-27 01:14:03,465+0000 INFO ReadBuffer RB-LR-Handler(tag: 292, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,465+0000 INFO ReadBuffer RB-LR-Handler(tag: 292, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,465+0000 INFO LocalIOProvider LR-Handler(tag: 292, GET) rbuf: RB-LR-Handler(tag: 292, GET) +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 292, GET) unregistering (last) +2013-08-27 01:14:03,465+0000 INFO ReadBuffer RB-LR-Handler(tag: 292, GET) de-allocating 1 buffers +2013-08-27 01:14:03,465+0000 INFO GetFileHandler Handler(tag: 2614, GET) unregistering (last) +2013-08-27 01:14:03,466+0000 INFO GetFileHandler Handler(tag: 2615, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,466+0000 INFO GetFileHandler Handler(tag: 2615, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,466+0000 INFO GetFileHandler Handler(tag: 2615, GET) -> 293 +2013-08-27 01:14:03,466+0000 INFO GetFileHandler Handler(tag: 293, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,466+0000 INFO GetFileHandler Handler(tag: 293, GET) reader: LR-Handler(tag: 293, GET) +2013-08-27 01:14:03,466+0000 INFO GetFileHandler Handler(tag: 293, GET) sending length: 543, 662823661 +2013-08-27 01:14:03,466+0000 INFO GetFileHandler Handler(tag: 2615, GET) sending length: 543, 1079593438 +2013-08-27 01:14:03,466+0000 INFO ReadBuffer RB-LR-Handler(tag: 293, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,466+0000 INFO ReadBuffer RB-LR-Handler(tag: 293, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,466+0000 INFO LocalIOProvider LR-Handler(tag: 293, GET) rbuf: RB-LR-Handler(tag: 293, GET) +2013-08-27 01:14:03,466+0000 INFO GetFileHandler Handler(tag: 293, GET) unregistering (last) +2013-08-27 01:14:03,466+0000 INFO ReadBuffer RB-LR-Handler(tag: 293, GET) de-allocating 1 buffers +2013-08-27 01:14:03,466+0000 INFO GetFileHandler Handler(tag: 2615, GET) unregistering (last) +2013-08-27 01:14:03,467+0000 INFO GetFileHandler Handler(tag: 2616, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,467+0000 INFO GetFileHandler Handler(tag: 2616, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,468+0000 INFO GetFileHandler Handler(tag: 2616, GET) -> 294 +2013-08-27 01:14:03,468+0000 INFO GetFileHandler Handler(tag: 294, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,468+0000 INFO GetFileHandler Handler(tag: 294, GET) reader: LR-Handler(tag: 294, GET) +2013-08-27 01:14:03,468+0000 INFO GetFileHandler Handler(tag: 294, GET) sending length: 543, 1055629929 +2013-08-27 01:14:03,468+0000 INFO GetFileHandler Handler(tag: 2616, GET) sending length: 543, 1609808836 +2013-08-27 01:14:03,468+0000 INFO ReadBuffer RB-LR-Handler(tag: 294, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,468+0000 INFO ReadBuffer RB-LR-Handler(tag: 294, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,468+0000 INFO LocalIOProvider LR-Handler(tag: 294, GET) rbuf: RB-LR-Handler(tag: 294, GET) +2013-08-27 01:14:03,468+0000 INFO GetFileHandler Handler(tag: 294, GET) unregistering (last) +2013-08-27 01:14:03,468+0000 INFO ReadBuffer RB-LR-Handler(tag: 294, GET) de-allocating 1 buffers +2013-08-27 01:14:03,468+0000 INFO GetFileHandler Handler(tag: 2616, GET) unregistering (last) +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 2617, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 2617, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 2617, GET) -> 295 +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 295, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 295, GET) reader: LR-Handler(tag: 295, GET) +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 295, GET) sending length: 543, 681653798 +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 2617, GET) sending length: 543, 1877609888 +2013-08-27 01:14:03,469+0000 INFO ReadBuffer RB-LR-Handler(tag: 295, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:03,469+0000 INFO ReadBuffer RB-LR-Handler(tag: 295, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,469+0000 INFO LocalIOProvider LR-Handler(tag: 295, GET) rbuf: RB-LR-Handler(tag: 295, GET) +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 2618, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 295, GET) unregistering (last) +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 2617, GET) unregistering (last) +2013-08-27 01:14:03,469+0000 INFO ReadBuffer RB-LR-Handler(tag: 295, GET) de-allocating 1 buffers +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 2618, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 2618, GET) -> 296 +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 296, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 296, GET) reader: LR-Handler(tag: 296, GET) +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 296, GET) sending length: 2093, 2077760136 +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 2618, GET) sending length: 2093, 683021885 +2013-08-27 01:14:03,469+0000 INFO ReadBuffer RB-LR-Handler(tag: 296, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,469+0000 INFO ReadBuffer RB-LR-Handler(tag: 296, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,469+0000 INFO LocalIOProvider LR-Handler(tag: 296, GET) rbuf: RB-LR-Handler(tag: 296, GET) +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 296, GET) unregistering (last) +2013-08-27 01:14:03,469+0000 INFO ReadBuffer RB-LR-Handler(tag: 296, GET) de-allocating 1 buffers +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 2618, GET) unregistering (last) +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 2619, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,469+0000 INFO GetFileHandler Handler(tag: 2619, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 2619, GET) -> 297 +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 297, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 297, GET) reader: LR-Handler(tag: 297, GET) +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 297, GET) sending length: 2093, 1639608796 +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 2619, GET) sending length: 2093, 394876068 +2013-08-27 01:14:03,470+0000 INFO ReadBuffer RB-LR-Handler(tag: 297, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,470+0000 INFO ReadBuffer RB-LR-Handler(tag: 297, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,470+0000 INFO LocalIOProvider LR-Handler(tag: 297, GET) rbuf: RB-LR-Handler(tag: 297, GET) +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 297, GET) unregistering (last) +2013-08-27 01:14:03,470+0000 INFO ReadBuffer RB-LR-Handler(tag: 297, GET) de-allocating 1 buffers +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 2619, GET) unregistering (last) +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 2620, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 2620, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 2620, GET) -> 298 +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 298, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 298, GET) reader: LR-Handler(tag: 298, GET) +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 298, GET) sending length: 2093, 1865175183 +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 2620, GET) sending length: 2093, 1180505422 +2013-08-27 01:14:03,470+0000 INFO ReadBuffer RB-LR-Handler(tag: 298, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,470+0000 INFO ReadBuffer RB-LR-Handler(tag: 298, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 2621, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,470+0000 INFO LocalIOProvider LR-Handler(tag: 298, GET) rbuf: RB-LR-Handler(tag: 298, GET) +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 298, GET) unregistering (last) +2013-08-27 01:14:03,470+0000 INFO ReadBuffer RB-LR-Handler(tag: 298, GET) de-allocating 1 buffers +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 2620, GET) unregistering (last) +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 2621, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 2621, GET) -> 299 +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 299, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 299, GET) reader: LR-Handler(tag: 299, GET) +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 299, GET) sending length: 2093, 921328496 +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 2621, GET) sending length: 2093, 1410937402 +2013-08-27 01:14:03,470+0000 INFO ReadBuffer RB-LR-Handler(tag: 299, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,470+0000 INFO ReadBuffer RB-LR-Handler(tag: 299, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,470+0000 INFO LocalIOProvider LR-Handler(tag: 299, GET) rbuf: RB-LR-Handler(tag: 299, GET) +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 299, GET) unregistering (last) +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 2622, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,470+0000 INFO ReadBuffer RB-LR-Handler(tag: 299, GET) de-allocating 1 buffers +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 2621, GET) unregistering (last) +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 2622, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 2622, GET) -> 300 +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 300, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 300, GET) reader: LR-Handler(tag: 300, GET) +2013-08-27 01:14:03,470+0000 INFO GetFileHandler Handler(tag: 300, GET) sending length: 2093, 1771766873 +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 2622, GET) sending length: 2093, 1077585209 +2013-08-27 01:14:03,471+0000 INFO ReadBuffer RB-LR-Handler(tag: 300, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,471+0000 INFO ReadBuffer RB-LR-Handler(tag: 300, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,471+0000 INFO LocalIOProvider LR-Handler(tag: 300, GET) rbuf: RB-LR-Handler(tag: 300, GET) +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 300, GET) unregistering (last) +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 2623, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,471+0000 INFO ReadBuffer RB-LR-Handler(tag: 300, GET) de-allocating 1 buffers +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 2622, GET) unregistering (last) +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 2623, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 2623, GET) -> 301 +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 301, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 301, GET) reader: LR-Handler(tag: 301, GET) +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 301, GET) sending length: 2093, 1879359552 +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 2623, GET) sending length: 2093, 1206510388 +2013-08-27 01:14:03,471+0000 INFO ReadBuffer RB-LR-Handler(tag: 301, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,471+0000 INFO ReadBuffer RB-LR-Handler(tag: 301, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,471+0000 INFO LocalIOProvider LR-Handler(tag: 301, GET) rbuf: RB-LR-Handler(tag: 301, GET) +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 301, GET) unregistering (last) +2013-08-27 01:14:03,471+0000 INFO ReadBuffer RB-LR-Handler(tag: 301, GET) de-allocating 1 buffers +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 2623, GET) unregistering (last) +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 2624, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 2624, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 2624, GET) -> 302 +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 302, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 302, GET) reader: LR-Handler(tag: 302, GET) +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 302, GET) sending length: 2093, 695450558 +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 2624, GET) sending length: 2093, 1831521332 +2013-08-27 01:14:03,471+0000 INFO ReadBuffer RB-LR-Handler(tag: 302, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,471+0000 INFO ReadBuffer RB-LR-Handler(tag: 302, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,471+0000 INFO LocalIOProvider LR-Handler(tag: 302, GET) rbuf: RB-LR-Handler(tag: 302, GET) +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 302, GET) unregistering (last) +2013-08-27 01:14:03,471+0000 INFO ReadBuffer RB-LR-Handler(tag: 302, GET) de-allocating 1 buffers +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 2624, GET) unregistering (last) +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 2625, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 2625, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 2625, GET) -> 303 +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 303, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 303, GET) reader: LR-Handler(tag: 303, GET) +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 303, GET) sending length: 2093, 668074440 +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 2625, GET) sending length: 2093, 1282606564 +2013-08-27 01:14:03,471+0000 INFO ReadBuffer RB-LR-Handler(tag: 303, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,471+0000 INFO ReadBuffer RB-LR-Handler(tag: 303, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,471+0000 INFO LocalIOProvider LR-Handler(tag: 303, GET) rbuf: RB-LR-Handler(tag: 303, GET) +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 303, GET) unregistering (last) +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 2626, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,471+0000 INFO ReadBuffer RB-LR-Handler(tag: 303, GET) de-allocating 1 buffers +2013-08-27 01:14:03,471+0000 INFO GetFileHandler Handler(tag: 2625, GET) unregistering (last) +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 2626, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 2626, GET) -> 304 +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 304, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 304, GET) reader: LR-Handler(tag: 304, GET) +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 304, GET) sending length: 2093, 1694353035 +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 2626, GET) sending length: 2093, 1358300025 +2013-08-27 01:14:03,472+0000 INFO ReadBuffer RB-LR-Handler(tag: 304, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,472+0000 INFO ReadBuffer RB-LR-Handler(tag: 304, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,472+0000 INFO LocalIOProvider LR-Handler(tag: 304, GET) rbuf: RB-LR-Handler(tag: 304, GET) +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 304, GET) unregistering (last) +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 2627, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,472+0000 INFO ReadBuffer RB-LR-Handler(tag: 304, GET) de-allocating 1 buffers +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 2626, GET) unregistering (last) +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 2627, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 2627, GET) -> 305 +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 305, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 305, GET) reader: LR-Handler(tag: 305, GET) +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 305, GET) sending length: 2093, 1924425353 +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 2627, GET) sending length: 2093, 565700404 +2013-08-27 01:14:03,472+0000 INFO ReadBuffer RB-LR-Handler(tag: 305, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,472+0000 INFO ReadBuffer RB-LR-Handler(tag: 305, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 2628, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,472+0000 INFO LocalIOProvider LR-Handler(tag: 305, GET) rbuf: RB-LR-Handler(tag: 305, GET) +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 305, GET) unregistering (last) +2013-08-27 01:14:03,472+0000 INFO ReadBuffer RB-LR-Handler(tag: 305, GET) de-allocating 1 buffers +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 2628, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 2627, GET) unregistering (last) +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 2628, GET) -> 306 +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 306, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 306, GET) reader: LR-Handler(tag: 306, GET) +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 306, GET) sending length: 2093, 355004788 +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 2628, GET) sending length: 2093, 855900550 +2013-08-27 01:14:03,472+0000 INFO ReadBuffer RB-LR-Handler(tag: 306, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,472+0000 INFO ReadBuffer RB-LR-Handler(tag: 306, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,472+0000 INFO LocalIOProvider LR-Handler(tag: 306, GET) rbuf: RB-LR-Handler(tag: 306, GET) +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 2629, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 306, GET) unregistering (last) +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 2628, GET) unregistering (last) +2013-08-27 01:14:03,472+0000 INFO ReadBuffer RB-LR-Handler(tag: 306, GET) de-allocating 1 buffers +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 2629, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 2629, GET) -> 307 +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 307, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,472+0000 INFO GetFileHandler Handler(tag: 307, GET) reader: LR-Handler(tag: 307, GET) +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 307, GET) sending length: 2093, 1123254663 +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 2629, GET) sending length: 2093, 12380264 +2013-08-27 01:14:03,473+0000 INFO ReadBuffer RB-LR-Handler(tag: 307, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,473+0000 INFO ReadBuffer RB-LR-Handler(tag: 307, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,473+0000 INFO LocalIOProvider LR-Handler(tag: 307, GET) rbuf: RB-LR-Handler(tag: 307, GET) +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 307, GET) unregistering (last) +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 2630, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,473+0000 INFO ReadBuffer RB-LR-Handler(tag: 307, GET) de-allocating 1 buffers +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 2629, GET) unregistering (last) +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 2630, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 2630, GET) -> 308 +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 308, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 308, GET) reader: LR-Handler(tag: 308, GET) +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 308, GET) sending length: 2093, 106758567 +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 2630, GET) sending length: 2093, 1142390324 +2013-08-27 01:14:03,473+0000 INFO ReadBuffer RB-LR-Handler(tag: 308, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,473+0000 INFO ReadBuffer RB-LR-Handler(tag: 308, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,473+0000 INFO LocalIOProvider LR-Handler(tag: 308, GET) rbuf: RB-LR-Handler(tag: 308, GET) +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 2631, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 308, GET) unregistering (last) +2013-08-27 01:14:03,473+0000 INFO ReadBuffer RB-LR-Handler(tag: 308, GET) de-allocating 1 buffers +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 2630, GET) unregistering (last) +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 2631, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 2631, GET) -> 309 +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 309, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 309, GET) reader: LR-Handler(tag: 309, GET) +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 309, GET) sending length: 2093, 2069901328 +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 2631, GET) sending length: 2093, 1744021943 +2013-08-27 01:14:03,473+0000 INFO ReadBuffer RB-LR-Handler(tag: 309, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,473+0000 INFO ReadBuffer RB-LR-Handler(tag: 309, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,473+0000 INFO LocalIOProvider LR-Handler(tag: 309, GET) rbuf: RB-LR-Handler(tag: 309, GET) +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 309, GET) unregistering (last) +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 2632, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 2631, GET) unregistering (last) +2013-08-27 01:14:03,473+0000 INFO ReadBuffer RB-LR-Handler(tag: 309, GET) de-allocating 1 buffers +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 2632, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 2632, GET) -> 310 +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 310, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 310, GET) reader: LR-Handler(tag: 310, GET) +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 310, GET) sending length: 2093, 1198969446 +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 2632, GET) sending length: 2093, 1240419121 +2013-08-27 01:14:03,473+0000 INFO ReadBuffer RB-LR-Handler(tag: 310, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,473+0000 INFO ReadBuffer RB-LR-Handler(tag: 310, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,473+0000 INFO LocalIOProvider LR-Handler(tag: 310, GET) rbuf: RB-LR-Handler(tag: 310, GET) +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 310, GET) unregistering (last) +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 2633, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,473+0000 INFO ReadBuffer RB-LR-Handler(tag: 310, GET) de-allocating 1 buffers +2013-08-27 01:14:03,473+0000 INFO GetFileHandler Handler(tag: 2632, GET) unregistering (last) +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 2633, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 2633, GET) -> 311 +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 311, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 311, GET) reader: LR-Handler(tag: 311, GET) +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 311, GET) sending length: 2093, 705236334 +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 2633, GET) sending length: 2093, 944817745 +2013-08-27 01:14:03,474+0000 INFO ReadBuffer RB-LR-Handler(tag: 311, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:03,474+0000 INFO ReadBuffer RB-LR-Handler(tag: 311, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,474+0000 INFO LocalIOProvider LR-Handler(tag: 311, GET) rbuf: RB-LR-Handler(tag: 311, GET) +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 311, GET) unregistering (last) +2013-08-27 01:14:03,474+0000 INFO ReadBuffer RB-LR-Handler(tag: 311, GET) de-allocating 1 buffers +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 2633, GET) unregistering (last) +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 2634, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 2634, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 2634, GET) -> 312 +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 312, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 312, GET) reader: LR-Handler(tag: 312, GET) +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 312, GET) sending length: 5032, 1850369317 +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 2634, GET) sending length: 5032, 1446418612 +2013-08-27 01:14:03,474+0000 INFO ReadBuffer RB-LR-Handler(tag: 312, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,474+0000 INFO ReadBuffer RB-LR-Handler(tag: 312, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,474+0000 INFO LocalIOProvider LR-Handler(tag: 312, GET) rbuf: RB-LR-Handler(tag: 312, GET) +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 2635, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 312, GET) unregistering (last) +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 2634, GET) unregistering (last) +2013-08-27 01:14:03,474+0000 INFO ReadBuffer RB-LR-Handler(tag: 312, GET) de-allocating 1 buffers +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 2635, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 2635, GET) -> 313 +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 313, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 313, GET) reader: LR-Handler(tag: 313, GET) +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 313, GET) sending length: 5032, 121943304 +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 2635, GET) sending length: 5032, 801711090 +2013-08-27 01:14:03,474+0000 INFO ReadBuffer RB-LR-Handler(tag: 313, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,474+0000 INFO ReadBuffer RB-LR-Handler(tag: 313, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,474+0000 INFO LocalIOProvider LR-Handler(tag: 313, GET) rbuf: RB-LR-Handler(tag: 313, GET) +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 313, GET) unregistering (last) +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 2636, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,474+0000 INFO ReadBuffer RB-LR-Handler(tag: 313, GET) de-allocating 1 buffers +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 2635, GET) unregistering (last) +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 2636, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 2636, GET) -> 314 +2013-08-27 01:14:03,474+0000 INFO GetFileHandler Handler(tag: 314, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 314, GET) reader: LR-Handler(tag: 314, GET) +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 314, GET) sending length: 5032, 1335732606 +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 2636, GET) sending length: 5032, 2011346951 +2013-08-27 01:14:03,475+0000 INFO ReadBuffer RB-LR-Handler(tag: 314, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,475+0000 INFO ReadBuffer RB-LR-Handler(tag: 314, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,475+0000 INFO LocalIOProvider LR-Handler(tag: 314, GET) rbuf: RB-LR-Handler(tag: 314, GET) +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 314, GET) unregistering (last) +2013-08-27 01:14:03,475+0000 INFO ReadBuffer RB-LR-Handler(tag: 314, GET) de-allocating 1 buffers +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 2636, GET) unregistering (last) +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 2637, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 2637, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 2637, GET) -> 315 +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 315, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 315, GET) reader: LR-Handler(tag: 315, GET) +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 315, GET) sending length: 5032, 1206155004 +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 2637, GET) sending length: 5032, 1749008195 +2013-08-27 01:14:03,475+0000 INFO ReadBuffer RB-LR-Handler(tag: 315, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,475+0000 INFO ReadBuffer RB-LR-Handler(tag: 315, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,475+0000 INFO LocalIOProvider LR-Handler(tag: 315, GET) rbuf: RB-LR-Handler(tag: 315, GET) +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 2638, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 315, GET) unregistering (last) +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 2637, GET) unregistering (last) +2013-08-27 01:14:03,475+0000 INFO ReadBuffer RB-LR-Handler(tag: 315, GET) de-allocating 1 buffers +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 2638, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 2638, GET) -> 316 +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 316, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 316, GET) reader: LR-Handler(tag: 316, GET) +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 316, GET) sending length: 5032, 561340542 +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 2638, GET) sending length: 5032, 554828123 +2013-08-27 01:14:03,475+0000 INFO ReadBuffer RB-LR-Handler(tag: 316, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,475+0000 INFO ReadBuffer RB-LR-Handler(tag: 316, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,475+0000 INFO LocalIOProvider LR-Handler(tag: 316, GET) rbuf: RB-LR-Handler(tag: 316, GET) +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 316, GET) unregistering (last) +2013-08-27 01:14:03,475+0000 INFO ReadBuffer RB-LR-Handler(tag: 316, GET) de-allocating 1 buffers +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 2639, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 2638, GET) unregistering (last) +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 2639, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 2639, GET) -> 317 +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 317, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 317, GET) reader: LR-Handler(tag: 317, GET) +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 317, GET) sending length: 5032, 707143228 +2013-08-27 01:14:03,475+0000 INFO GetFileHandler Handler(tag: 2639, GET) sending length: 5032, 781730498 +2013-08-27 01:14:03,475+0000 INFO ReadBuffer RB-LR-Handler(tag: 317, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,475+0000 INFO ReadBuffer RB-LR-Handler(tag: 317, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,475+0000 INFO LocalIOProvider LR-Handler(tag: 317, GET) rbuf: RB-LR-Handler(tag: 317, GET) +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 317, GET) unregistering (last) +2013-08-27 01:14:03,476+0000 INFO ReadBuffer RB-LR-Handler(tag: 317, GET) de-allocating 1 buffers +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2639, GET) unregistering (last) +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2640, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2640, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2640, GET) -> 318 +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 318, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 318, GET) reader: LR-Handler(tag: 318, GET) +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 318, GET) sending length: 5032, 1761579281 +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2640, GET) sending length: 5032, 1653418225 +2013-08-27 01:14:03,476+0000 INFO ReadBuffer RB-LR-Handler(tag: 318, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,476+0000 INFO ReadBuffer RB-LR-Handler(tag: 318, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,476+0000 INFO LocalIOProvider LR-Handler(tag: 318, GET) rbuf: RB-LR-Handler(tag: 318, GET) +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 318, GET) unregistering (last) +2013-08-27 01:14:03,476+0000 INFO ReadBuffer RB-LR-Handler(tag: 318, GET) de-allocating 1 buffers +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2640, GET) unregistering (last) +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2641, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2641, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2641, GET) -> 319 +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 319, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 319, GET) reader: LR-Handler(tag: 319, GET) +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 319, GET) sending length: 5032, 43341430 +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2641, GET) sending length: 5032, 442457677 +2013-08-27 01:14:03,476+0000 INFO ReadBuffer RB-LR-Handler(tag: 319, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,476+0000 INFO ReadBuffer RB-LR-Handler(tag: 319, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,476+0000 INFO LocalIOProvider LR-Handler(tag: 319, GET) rbuf: RB-LR-Handler(tag: 319, GET) +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 319, GET) unregistering (last) +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2642, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,476+0000 INFO ReadBuffer RB-LR-Handler(tag: 319, GET) de-allocating 1 buffers +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2641, GET) unregistering (last) +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2642, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2642, GET) -> 320 +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 320, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 320, GET) reader: LR-Handler(tag: 320, GET) +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 320, GET) sending length: 5032, 530634372 +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2642, GET) sending length: 5032, 2019787860 +2013-08-27 01:14:03,476+0000 INFO ReadBuffer RB-LR-Handler(tag: 320, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,476+0000 INFO ReadBuffer RB-LR-Handler(tag: 320, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,476+0000 INFO LocalIOProvider LR-Handler(tag: 320, GET) rbuf: RB-LR-Handler(tag: 320, GET) +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 320, GET) unregistering (last) +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2643, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,476+0000 INFO ReadBuffer RB-LR-Handler(tag: 320, GET) de-allocating 1 buffers +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2642, GET) unregistering (last) +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2643, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,476+0000 INFO GetFileHandler Handler(tag: 2643, GET) -> 321 +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 321, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 321, GET) reader: LR-Handler(tag: 321, GET) +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 321, GET) sending length: 5032, 710467494 +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 2643, GET) sending length: 5032, 818094338 +2013-08-27 01:14:03,477+0000 INFO ReadBuffer RB-LR-Handler(tag: 321, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,477+0000 INFO ReadBuffer RB-LR-Handler(tag: 321, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,477+0000 INFO LocalIOProvider LR-Handler(tag: 321, GET) rbuf: RB-LR-Handler(tag: 321, GET) +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 321, GET) unregistering (last) +2013-08-27 01:14:03,477+0000 INFO ReadBuffer RB-LR-Handler(tag: 321, GET) de-allocating 1 buffers +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 2643, GET) unregistering (last) +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 2644, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 2644, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 2644, GET) -> 322 +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 322, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 322, GET) reader: LR-Handler(tag: 322, GET) +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 322, GET) sending length: 5032, 856410920 +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 2644, GET) sending length: 5032, 1262930246 +2013-08-27 01:14:03,477+0000 INFO ReadBuffer RB-LR-Handler(tag: 322, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,477+0000 INFO ReadBuffer RB-LR-Handler(tag: 322, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,477+0000 INFO LocalIOProvider LR-Handler(tag: 322, GET) rbuf: RB-LR-Handler(tag: 322, GET) +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 2645, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 322, GET) unregistering (last) +2013-08-27 01:14:03,477+0000 INFO ReadBuffer RB-LR-Handler(tag: 322, GET) de-allocating 1 buffers +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 2644, GET) unregistering (last) +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 2645, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 2645, GET) -> 323 +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 323, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 323, GET) reader: LR-Handler(tag: 323, GET) +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 323, GET) sending length: 5032, 441718654 +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 2645, GET) sending length: 5032, 114450099 +2013-08-27 01:14:03,477+0000 INFO ReadBuffer RB-LR-Handler(tag: 323, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,477+0000 INFO ReadBuffer RB-LR-Handler(tag: 323, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,477+0000 INFO LocalIOProvider LR-Handler(tag: 323, GET) rbuf: RB-LR-Handler(tag: 323, GET) +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 323, GET) unregistering (last) +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 2646, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,477+0000 INFO ReadBuffer RB-LR-Handler(tag: 323, GET) de-allocating 1 buffers +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 2645, GET) unregistering (last) +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 2646, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 2646, GET) -> 324 +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 324, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 324, GET) reader: LR-Handler(tag: 324, GET) +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 324, GET) sending length: 5032, 141259909 +2013-08-27 01:14:03,477+0000 INFO GetFileHandler Handler(tag: 2646, GET) sending length: 5032, 1185860628 +2013-08-27 01:14:03,477+0000 INFO ReadBuffer RB-LR-Handler(tag: 324, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,477+0000 INFO ReadBuffer RB-LR-Handler(tag: 324, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,477+0000 INFO LocalIOProvider LR-Handler(tag: 324, GET) rbuf: RB-LR-Handler(tag: 324, GET) +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 324, GET) unregistering (last) +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2647, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,478+0000 INFO ReadBuffer RB-LR-Handler(tag: 324, GET) de-allocating 1 buffers +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2646, GET) unregistering (last) +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2647, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2647, GET) -> 325 +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 325, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 325, GET) reader: LR-Handler(tag: 325, GET) +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 325, GET) sending length: 5032, 1579302610 +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2647, GET) sending length: 5032, 441089350 +2013-08-27 01:14:03,478+0000 INFO ReadBuffer RB-LR-Handler(tag: 325, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,478+0000 INFO ReadBuffer RB-LR-Handler(tag: 325, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,478+0000 INFO LocalIOProvider LR-Handler(tag: 325, GET) rbuf: RB-LR-Handler(tag: 325, GET) +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 325, GET) unregistering (last) +2013-08-27 01:14:03,478+0000 INFO ReadBuffer RB-LR-Handler(tag: 325, GET) de-allocating 1 buffers +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2647, GET) unregistering (last) +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2648, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2648, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2648, GET) -> 326 +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 326, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 326, GET) reader: LR-Handler(tag: 326, GET) +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 326, GET) sending length: 5032, 969437262 +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2648, GET) sending length: 5032, 373632645 +2013-08-27 01:14:03,478+0000 INFO ReadBuffer RB-LR-Handler(tag: 326, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,478+0000 INFO ReadBuffer RB-LR-Handler(tag: 326, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,478+0000 INFO LocalIOProvider LR-Handler(tag: 326, GET) rbuf: RB-LR-Handler(tag: 326, GET) +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 326, GET) unregistering (last) +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2649, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2648, GET) unregistering (last) +2013-08-27 01:14:03,478+0000 INFO ReadBuffer RB-LR-Handler(tag: 326, GET) de-allocating 1 buffers +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2649, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2649, GET) -> 327 +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 327, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 327, GET) reader: LR-Handler(tag: 327, GET) +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 327, GET) sending length: 5032, 179640746 +2013-08-27 01:14:03,478+0000 INFO ReadBuffer RB-LR-Handler(tag: 327, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:03,478+0000 INFO ReadBuffer RB-LR-Handler(tag: 327, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2649, GET) sending length: 5032, 835861492 +2013-08-27 01:14:03,478+0000 INFO LocalIOProvider LR-Handler(tag: 327, GET) rbuf: RB-LR-Handler(tag: 327, GET) +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 327, GET) unregistering (last) +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2650, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,478+0000 INFO ReadBuffer RB-LR-Handler(tag: 327, GET) de-allocating 1 buffers +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2649, GET) unregistering (last) +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2650, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 2650, GET) -> 328 +2013-08-27 01:14:03,478+0000 INFO GetFileHandler Handler(tag: 328, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 328, GET) reader: LR-Handler(tag: 328, GET) +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 328, GET) sending length: 6078, 1235943735 +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 2650, GET) sending length: 6078, 2044520361 +2013-08-27 01:14:03,479+0000 INFO ReadBuffer RB-LR-Handler(tag: 328, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 2651, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,479+0000 INFO ReadBuffer RB-LR-Handler(tag: 328, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,479+0000 INFO LocalIOProvider LR-Handler(tag: 328, GET) rbuf: RB-LR-Handler(tag: 328, GET) +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 2651, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 328, GET) unregistering (last) +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 2650, GET) unregistering (last) +2013-08-27 01:14:03,479+0000 INFO ReadBuffer RB-LR-Handler(tag: 328, GET) de-allocating 1 buffers +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 2651, GET) -> 329 +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 329, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 329, GET) reader: LR-Handler(tag: 329, GET) +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 329, GET) sending length: 6078, 1208820522 +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 2651, GET) sending length: 6078, 1451212634 +2013-08-27 01:14:03,479+0000 INFO ReadBuffer RB-LR-Handler(tag: 329, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 2652, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,479+0000 INFO ReadBuffer RB-LR-Handler(tag: 329, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,479+0000 INFO LocalIOProvider LR-Handler(tag: 329, GET) rbuf: RB-LR-Handler(tag: 329, GET) +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 329, GET) unregistering (last) +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 2652, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,479+0000 INFO ReadBuffer RB-LR-Handler(tag: 329, GET) de-allocating 1 buffers +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 2651, GET) unregistering (last) +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 2652, GET) -> 330 +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 330, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 330, GET) reader: LR-Handler(tag: 330, GET) +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 330, GET) sending length: 6078, 1962408005 +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 2652, GET) sending length: 6078, 1137489409 +2013-08-27 01:14:03,479+0000 INFO ReadBuffer RB-LR-Handler(tag: 330, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,479+0000 INFO ReadBuffer RB-LR-Handler(tag: 330, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,479+0000 INFO LocalIOProvider LR-Handler(tag: 330, GET) rbuf: RB-LR-Handler(tag: 330, GET) +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 2653, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 330, GET) unregistering (last) +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 2652, GET) unregistering (last) +2013-08-27 01:14:03,479+0000 INFO ReadBuffer RB-LR-Handler(tag: 330, GET) de-allocating 1 buffers +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 2653, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 2653, GET) -> 331 +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 331, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 331, GET) reader: LR-Handler(tag: 331, GET) +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 331, GET) sending length: 6078, 39795140 +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 2653, GET) sending length: 6078, 969503763 +2013-08-27 01:14:03,479+0000 INFO ReadBuffer RB-LR-Handler(tag: 331, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,479+0000 INFO GetFileHandler Handler(tag: 2654, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,479+0000 INFO ReadBuffer RB-LR-Handler(tag: 331, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,480+0000 INFO LocalIOProvider LR-Handler(tag: 331, GET) rbuf: RB-LR-Handler(tag: 331, GET) +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 331, GET) unregistering (last) +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 2654, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,480+0000 INFO ReadBuffer RB-LR-Handler(tag: 331, GET) de-allocating 1 buffers +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 2653, GET) unregistering (last) +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 2654, GET) -> 332 +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 332, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 332, GET) reader: LR-Handler(tag: 332, GET) +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 332, GET) sending length: 6078, 1018363463 +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 2654, GET) sending length: 6078, 190056051 +2013-08-27 01:14:03,480+0000 INFO ReadBuffer RB-LR-Handler(tag: 332, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,480+0000 INFO ReadBuffer RB-LR-Handler(tag: 332, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,480+0000 INFO LocalIOProvider LR-Handler(tag: 332, GET) rbuf: RB-LR-Handler(tag: 332, GET) +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 2655, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 332, GET) unregistering (last) +2013-08-27 01:14:03,480+0000 INFO ReadBuffer RB-LR-Handler(tag: 332, GET) de-allocating 1 buffers +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 2654, GET) unregistering (last) +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 2655, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 2655, GET) -> 333 +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 333, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 333, GET) reader: LR-Handler(tag: 333, GET) +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 333, GET) sending length: 6078, 525567291 +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 2655, GET) sending length: 6078, 609219726 +2013-08-27 01:14:03,480+0000 INFO ReadBuffer RB-LR-Handler(tag: 333, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,480+0000 INFO ReadBuffer RB-LR-Handler(tag: 333, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,480+0000 INFO LocalIOProvider LR-Handler(tag: 333, GET) rbuf: RB-LR-Handler(tag: 333, GET) +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 2656, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 333, GET) unregistering (last) +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 2655, GET) unregistering (last) +2013-08-27 01:14:03,480+0000 INFO ReadBuffer RB-LR-Handler(tag: 333, GET) de-allocating 1 buffers +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 2656, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 2656, GET) -> 334 +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 334, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 334, GET) reader: LR-Handler(tag: 334, GET) +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 334, GET) sending length: 6078, 854738610 +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 2656, GET) sending length: 6078, 1073703487 +2013-08-27 01:14:03,480+0000 INFO ReadBuffer RB-LR-Handler(tag: 334, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,480+0000 INFO ReadBuffer RB-LR-Handler(tag: 334, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,480+0000 INFO LocalIOProvider LR-Handler(tag: 334, GET) rbuf: RB-LR-Handler(tag: 334, GET) +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 2657, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 334, GET) unregistering (last) +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 2656, GET) unregistering (last) +2013-08-27 01:14:03,480+0000 INFO ReadBuffer RB-LR-Handler(tag: 334, GET) de-allocating 1 buffers +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 2657, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 2657, GET) -> 335 +2013-08-27 01:14:03,480+0000 INFO GetFileHandler Handler(tag: 335, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 335, GET) reader: LR-Handler(tag: 335, GET) +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 335, GET) sending length: 6078, 1221495030 +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 2657, GET) sending length: 6078, 1870787537 +2013-08-27 01:14:03,481+0000 INFO ReadBuffer RB-LR-Handler(tag: 335, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,481+0000 INFO ReadBuffer RB-LR-Handler(tag: 335, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 2658, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,481+0000 INFO LocalIOProvider LR-Handler(tag: 335, GET) rbuf: RB-LR-Handler(tag: 335, GET) +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 335, GET) unregistering (last) +2013-08-27 01:14:03,481+0000 INFO ReadBuffer RB-LR-Handler(tag: 335, GET) de-allocating 1 buffers +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 2657, GET) unregistering (last) +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 2658, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 2658, GET) -> 336 +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 336, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 336, GET) reader: LR-Handler(tag: 336, GET) +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 336, GET) sending length: 6078, 1873907781 +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 2658, GET) sending length: 6078, 1920392012 +2013-08-27 01:14:03,481+0000 INFO ReadBuffer RB-LR-Handler(tag: 336, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,481+0000 INFO ReadBuffer RB-LR-Handler(tag: 336, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,481+0000 INFO LocalIOProvider LR-Handler(tag: 336, GET) rbuf: RB-LR-Handler(tag: 336, GET) +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 336, GET) unregistering (last) +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 2659, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 2658, GET) unregistering (last) +2013-08-27 01:14:03,481+0000 INFO ReadBuffer RB-LR-Handler(tag: 336, GET) de-allocating 1 buffers +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 2659, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 2659, GET) -> 337 +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 337, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 337, GET) reader: LR-Handler(tag: 337, GET) +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 337, GET) sending length: 6078, 2108050098 +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 2659, GET) sending length: 6078, 812788880 +2013-08-27 01:14:03,481+0000 INFO ReadBuffer RB-LR-Handler(tag: 337, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,481+0000 INFO ReadBuffer RB-LR-Handler(tag: 337, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 2660, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,481+0000 INFO LocalIOProvider LR-Handler(tag: 337, GET) rbuf: RB-LR-Handler(tag: 337, GET) +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 337, GET) unregistering (last) +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 2660, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,481+0000 INFO ReadBuffer RB-LR-Handler(tag: 337, GET) de-allocating 1 buffers +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 2659, GET) unregistering (last) +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 2660, GET) -> 338 +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 338, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 338, GET) reader: LR-Handler(tag: 338, GET) +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 338, GET) sending length: 6078, 422906358 +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 2660, GET) sending length: 6078, 1763770983 +2013-08-27 01:14:03,481+0000 INFO ReadBuffer RB-LR-Handler(tag: 338, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,481+0000 INFO ReadBuffer RB-LR-Handler(tag: 338, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,481+0000 INFO LocalIOProvider LR-Handler(tag: 338, GET) rbuf: RB-LR-Handler(tag: 338, GET) +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 2661, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 338, GET) unregistering (last) +2013-08-27 01:14:03,481+0000 INFO ReadBuffer RB-LR-Handler(tag: 338, GET) de-allocating 1 buffers +2013-08-27 01:14:03,481+0000 INFO GetFileHandler Handler(tag: 2660, GET) unregistering (last) +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 2661, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 2661, GET) -> 339 +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 339, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 339, GET) reader: LR-Handler(tag: 339, GET) +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 339, GET) sending length: 6078, 87308272 +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 2661, GET) sending length: 6078, 658796603 +2013-08-27 01:14:03,482+0000 INFO ReadBuffer RB-LR-Handler(tag: 339, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,482+0000 INFO ReadBuffer RB-LR-Handler(tag: 339, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,482+0000 INFO LocalIOProvider LR-Handler(tag: 339, GET) rbuf: RB-LR-Handler(tag: 339, GET) +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 2662, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 339, GET) unregistering (last) +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 2661, GET) unregistering (last) +2013-08-27 01:14:03,482+0000 INFO ReadBuffer RB-LR-Handler(tag: 339, GET) de-allocating 1 buffers +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 2662, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 2662, GET) -> 340 +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 340, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 340, GET) reader: LR-Handler(tag: 340, GET) +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 340, GET) sending length: 6078, 422692628 +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 2662, GET) sending length: 6078, 319094520 +2013-08-27 01:14:03,482+0000 INFO ReadBuffer RB-LR-Handler(tag: 340, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,482+0000 INFO ReadBuffer RB-LR-Handler(tag: 340, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 2663, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,482+0000 INFO LocalIOProvider LR-Handler(tag: 340, GET) rbuf: RB-LR-Handler(tag: 340, GET) +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 340, GET) unregistering (last) +2013-08-27 01:14:03,482+0000 INFO ReadBuffer RB-LR-Handler(tag: 340, GET) de-allocating 1 buffers +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 2662, GET) unregistering (last) +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 2663, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 2663, GET) -> 341 +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 341, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 341, GET) reader: LR-Handler(tag: 341, GET) +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 341, GET) sending length: 6078, 1919339665 +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 2663, GET) sending length: 6078, 989888068 +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 2664, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,482+0000 INFO ReadBuffer RB-LR-Handler(tag: 341, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,482+0000 INFO ReadBuffer RB-LR-Handler(tag: 341, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,482+0000 INFO LocalIOProvider LR-Handler(tag: 341, GET) rbuf: RB-LR-Handler(tag: 341, GET) +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 2664, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 341, GET) unregistering (last) +2013-08-27 01:14:03,482+0000 INFO ReadBuffer RB-LR-Handler(tag: 341, GET) de-allocating 1 buffers +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 2663, GET) unregistering (last) +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 2664, GET) -> 342 +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 342, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 342, GET) reader: LR-Handler(tag: 342, GET) +2013-08-27 01:14:03,482+0000 INFO GetFileHandler Handler(tag: 342, GET) sending length: 6078, 720758883 +2013-08-27 01:14:03,483+0000 INFO GetFileHandler Handler(tag: 2664, GET) sending length: 6078, 1986777501 +2013-08-27 01:14:03,483+0000 INFO ReadBuffer RB-LR-Handler(tag: 342, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,483+0000 INFO ReadBuffer RB-LR-Handler(tag: 342, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,483+0000 INFO LocalIOProvider LR-Handler(tag: 342, GET) rbuf: RB-LR-Handler(tag: 342, GET) +2013-08-27 01:14:03,483+0000 INFO GetFileHandler Handler(tag: 2665, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,483+0000 INFO GetFileHandler Handler(tag: 342, GET) unregistering (last) +2013-08-27 01:14:03,483+0000 INFO ReadBuffer RB-LR-Handler(tag: 342, GET) de-allocating 1 buffers +2013-08-27 01:14:03,483+0000 INFO GetFileHandler Handler(tag: 2664, GET) unregistering (last) +2013-08-27 01:14:03,483+0000 INFO GetFileHandler Handler(tag: 2665, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,483+0000 INFO GetFileHandler Handler(tag: 2665, GET) -> 343 +2013-08-27 01:14:03,483+0000 INFO GetFileHandler Handler(tag: 343, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:03,483+0000 INFO GetFileHandler Handler(tag: 343, GET) reader: LR-Handler(tag: 343, GET) +2013-08-27 01:14:03,483+0000 INFO GetFileHandler Handler(tag: 343, GET) sending length: 6078, 1203499810 +2013-08-27 01:14:03,483+0000 INFO GetFileHandler Handler(tag: 2665, GET) sending length: 6078, 72835577 +2013-08-27 01:14:03,483+0000 INFO ReadBuffer RB-LR-Handler(tag: 343, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:03,483+0000 INFO ReadBuffer RB-LR-Handler(tag: 343, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,483+0000 INFO LocalIOProvider LR-Handler(tag: 343, GET) rbuf: RB-LR-Handler(tag: 343, GET) +2013-08-27 01:14:03,483+0000 INFO GetFileHandler Handler(tag: 343, GET) unregistering (last) +2013-08-27 01:14:03,483+0000 INFO GetFileHandler Handler(tag: 2665, GET) unregistering (last) +2013-08-27 01:14:03,483+0000 INFO ReadBuffer RB-LR-Handler(tag: 343, GET) de-allocating 1 buffers +2013-08-27 01:14:03,484+0000 DEBUG Cpu Active workerid=0827-1301520-000001:000000 +2013-08-27 01:14:03,484+0000 INFO RequestHandler Handler(tag: 2666, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,484+0000 INFO RequestHandler Handler(tag: 344, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,485+0000 DEBUG Cpu Active workerid=0827-1301520-000001:000000 +2013-08-27 01:14:03,485+0000 INFO RequestHandler Handler(tag: 2667, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,485+0000 INFO RequestHandler Handler(tag: 345, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,486+0000 DEBUG Cpu Active workerid=0827-1301520-000001:000000 +2013-08-27 01:14:03,486+0000 INFO RequestHandler Handler(tag: 2668, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,486+0000 INFO RequestHandler Handler(tag: 346, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,486+0000 DEBUG Cpu Active workerid=0827-1301520-000001:000000 +2013-08-27 01:14:03,486+0000 INFO RequestHandler Handler(tag: 2669, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,486+0000 INFO RequestHandler Handler(tag: 347, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,487+0000 DEBUG Cpu Active workerid=0827-1301520-000001:000000 +2013-08-27 01:14:03,487+0000 INFO RequestHandler Handler(tag: 2670, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,487+0000 INFO RequestHandler Handler(tag: 348, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,488+0000 DEBUG Cpu Active workerid=0827-1301520-000001:000000 +2013-08-27 01:14:03,488+0000 INFO RequestHandler Handler(tag: 2671, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,488+0000 INFO RequestHandler Handler(tag: 349, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,489+0000 DEBUG Cpu Active workerid=0827-1301520-000001:000000 +2013-08-27 01:14:03,489+0000 INFO RequestHandler Handler(tag: 2672, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,489+0000 INFO RequestHandler Handler(tag: 350, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,490+0000 DEBUG Cpu Active workerid=0827-1301520-000001:000000 +2013-08-27 01:14:03,490+0000 INFO RequestHandler Handler(tag: 2673, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,490+0000 INFO RequestHandler Handler(tag: 351, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,491+0000 DEBUG Cpu Active workerid=0827-1301520-000001:000000 +2013-08-27 01:14:03,491+0000 INFO RequestHandler Handler(tag: 2674, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,491+0000 INFO RequestHandler Handler(tag: 352, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,492+0000 DEBUG Cpu Active workerid=0827-1301520-000001:000000 +2013-08-27 01:14:03,492+0000 INFO RequestHandler Handler(tag: 2675, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,492+0000 INFO RequestHandler Handler(tag: 353, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,493+0000 DEBUG Cpu Active workerid=0827-1301520-000001:000000 +2013-08-27 01:14:03,493+0000 INFO RequestHandler Handler(tag: 2676, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,493+0000 INFO RequestHandler Handler(tag: 354, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,493+0000 DEBUG Cpu Active workerid=0827-1301520-000001:000000 +2013-08-27 01:14:03,493+0000 INFO RequestHandler Handler(tag: 355, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,493+0000 INFO RequestHandler Handler(tag: 2677, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,494+0000 DEBUG Cpu Active workerid=0827-1301520-000001:000000 +2013-08-27 01:14:03,494+0000 INFO RequestHandler Handler(tag: 2678, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,494+0000 INFO RequestHandler Handler(tag: 356, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,495+0000 DEBUG Cpu Active workerid=0827-1301520-000001:000000 +2013-08-27 01:14:03,495+0000 INFO RequestHandler Handler(tag: 2679, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,495+0000 INFO RequestHandler Handler(tag: 357, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,496+0000 DEBUG Cpu Active workerid=0827-1301520-000001:000000 +2013-08-27 01:14:03,496+0000 INFO RequestHandler Handler(tag: 2680, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,496+0000 INFO RequestHandler Handler(tag: 358, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,497+0000 DEBUG Cpu Active workerid=0827-1301520-000001:000000 +2013-08-27 01:14:03,497+0000 INFO RequestHandler Handler(tag: 2681, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,497+0000 INFO RequestHandler Handler(tag: 359, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,767+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,767+0000 INFO RequestHandler Handler(tag: 3147, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,767+0000 INFO RequestHandler Handler(tag: 360, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,768+0000 INFO PutFileHandler Handler(tag: 3148, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/p/runampl-pcztedel/wrapper.error +2013-08-27 01:14:03,768+0000 INFO PutFileHandler Handler(tag: 3148, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-pcztedel.error +2013-08-27 01:14:03,770+0000 INFO PutFileCommand Sending Command(tag: 361, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,771+0000 INFO PutFileCommand Command(tag: 361, PUT) (t) sending data +2013-08-27 01:14:03,771+0000 INFO PutFileHandler Handler(tag: 3148, PUT) -> 361 +2013-08-27 01:14:03,771+0000 INFO PutFileHandler Handler(tag: 361, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/p/runampl-pcztedel/wrapper.error +2013-08-27 01:14:03,771+0000 INFO PutFileHandler Handler(tag: 361, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-pcztedel.error +2013-08-27 01:14:03,771+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,771+0000 INFO RequestHandler Handler(tag: 3149, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,771+0000 INFO PutFileHandler Handler(tag: 3150, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/p/runampl-pcztedel/wrapper.log +2013-08-27 01:14:03,771+0000 INFO PutFileHandler Handler(tag: 3150, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-pcztedel.info +2013-08-27 01:14:03,771+0000 INFO PutFileCommand Sending Command(tag: 363, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,771+0000 INFO PutFileCommand Command(tag: 363, PUT) (t) sending data +2013-08-27 01:14:03,771+0000 INFO PutFileHandler Handler(tag: 3150, PUT) -> 363 +2013-08-27 01:14:03,772+0000 INFO RequestHandler Handler(tag: 362, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,772+0000 INFO PutFileHandler Handler(tag: 363, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/p/runampl-pcztedel/wrapper.log +2013-08-27 01:14:03,772+0000 INFO PutFileHandler Handler(tag: 363, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-pcztedel.info +2013-08-27 01:14:03,779+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,779+0000 INFO RequestHandler Handler(tag: 3151, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,779+0000 INFO RequestHandler Handler(tag: 364, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,779+0000 INFO PutFileHandler Handler(tag: 3152, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/5/runampl-5cztedel/wrapper.error +2013-08-27 01:14:03,779+0000 INFO PutFileHandler Handler(tag: 3152, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-5cztedel.error +2013-08-27 01:14:03,779+0000 INFO PutFileCommand Sending Command(tag: 365, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,779+0000 INFO PutFileCommand Command(tag: 365, PUT) (t) sending data +2013-08-27 01:14:03,779+0000 INFO PutFileHandler Handler(tag: 3152, PUT) -> 365 +2013-08-27 01:14:03,779+0000 INFO PutFileHandler Handler(tag: 365, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/5/runampl-5cztedel/wrapper.error +2013-08-27 01:14:03,779+0000 INFO PutFileHandler Handler(tag: 365, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-5cztedel.error +2013-08-27 01:14:03,779+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,779+0000 INFO RequestHandler Handler(tag: 3153, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,779+0000 INFO RequestHandler Handler(tag: 366, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,779+0000 INFO PutFileHandler Handler(tag: 3154, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/5/runampl-5cztedel/wrapper.log +2013-08-27 01:14:03,779+0000 INFO PutFileHandler Handler(tag: 3154, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-5cztedel.info +2013-08-27 01:14:03,779+0000 INFO PutFileCommand Sending Command(tag: 367, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,779+0000 INFO PutFileCommand Command(tag: 367, PUT) (t) sending data +2013-08-27 01:14:03,779+0000 INFO PutFileHandler Handler(tag: 3154, PUT) -> 367 +2013-08-27 01:14:03,779+0000 INFO PutFileHandler Handler(tag: 367, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/5/runampl-5cztedel/wrapper.log +2013-08-27 01:14:03,779+0000 INFO PutFileHandler Handler(tag: 367, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-5cztedel.info +2013-08-27 01:14:03,780+0000 INFO PutFileHandler Handler(tag: 361, PUT) Transfer done +2013-08-27 01:14:03,780+0000 INFO RequestHandler Handler(tag: 361, PUT) unregistering (send) +2013-08-27 01:14:03,780+0000 INFO PutFileHandler Handler(tag: 3148, PUT) Transfer done +2013-08-27 01:14:03,780+0000 INFO RequestHandler Handler(tag: 3148, PUT) unregistering (send) +2013-08-27 01:14:03,783+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,783+0000 INFO RequestHandler Handler(tag: 3155, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,783+0000 INFO RequestHandler Handler(tag: 368, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,783+0000 INFO PutFileHandler Handler(tag: 3156, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/s/runampl-scztedel/wrapper.log +2013-08-27 01:14:03,783+0000 INFO PutFileHandler Handler(tag: 3156, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-scztedel.info +2013-08-27 01:14:03,783+0000 INFO PutFileCommand Sending Command(tag: 369, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,783+0000 INFO PutFileCommand Command(tag: 369, PUT) (t) sending data +2013-08-27 01:14:03,783+0000 INFO PutFileHandler Handler(tag: 3156, PUT) -> 369 +2013-08-27 01:14:03,783+0000 INFO PutFileHandler Handler(tag: 369, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/s/runampl-scztedel/wrapper.log +2013-08-27 01:14:03,783+0000 INFO PutFileHandler Handler(tag: 369, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-scztedel.info +2013-08-27 01:14:03,784+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,784+0000 INFO PutFileHandler Handler(tag: 363, PUT) Transfer done +2013-08-27 01:14:03,784+0000 INFO RequestHandler Handler(tag: 3157, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,784+0000 INFO RequestHandler Handler(tag: 363, PUT) unregistering (send) +2013-08-27 01:14:03,784+0000 INFO RequestHandler Handler(tag: 370, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,784+0000 INFO PutFileHandler Handler(tag: 3150, PUT) Transfer done +2013-08-27 01:14:03,784+0000 INFO RequestHandler Handler(tag: 3150, PUT) unregistering (send) +2013-08-27 01:14:03,784+0000 INFO PutFileHandler Handler(tag: 3158, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/s/runampl-scztedel/wrapper.error +2013-08-27 01:14:03,784+0000 INFO PutFileHandler Handler(tag: 3158, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-scztedel.error +2013-08-27 01:14:03,784+0000 INFO PutFileCommand Sending Command(tag: 371, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,784+0000 INFO PutFileCommand Command(tag: 371, PUT) (t) sending data +2013-08-27 01:14:03,784+0000 INFO PutFileHandler Handler(tag: 3158, PUT) -> 371 +2013-08-27 01:14:03,784+0000 INFO PutFileHandler Handler(tag: 371, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/s/runampl-scztedel/wrapper.error +2013-08-27 01:14:03,784+0000 INFO PutFileHandler Handler(tag: 371, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-scztedel.error +2013-08-27 01:14:03,785+0000 INFO PutFileHandler Handler(tag: 365, PUT) Transfer done +2013-08-27 01:14:03,785+0000 INFO RequestHandler Handler(tag: 365, PUT) unregistering (send) +2013-08-27 01:14:03,785+0000 INFO PutFileHandler Handler(tag: 3152, PUT) Transfer done +2013-08-27 01:14:03,785+0000 INFO RequestHandler Handler(tag: 3152, PUT) unregistering (send) +2013-08-27 01:14:03,786+0000 INFO PutFileHandler Handler(tag: 367, PUT) Transfer done +2013-08-27 01:14:03,786+0000 INFO RequestHandler Handler(tag: 367, PUT) unregistering (send) +2013-08-27 01:14:03,786+0000 INFO PutFileHandler Handler(tag: 3154, PUT) Transfer done +2013-08-27 01:14:03,786+0000 INFO RequestHandler Handler(tag: 3154, PUT) unregistering (send) +2013-08-27 01:14:03,787+0000 INFO PutFileHandler Handler(tag: 369, PUT) Transfer done +2013-08-27 01:14:03,787+0000 INFO RequestHandler Handler(tag: 369, PUT) unregistering (send) +2013-08-27 01:14:03,787+0000 INFO PutFileHandler Handler(tag: 3156, PUT) Transfer done +2013-08-27 01:14:03,787+0000 INFO RequestHandler Handler(tag: 3156, PUT) unregistering (send) +2013-08-27 01:14:03,788+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:03,788+0000 INFO Cpu 0827-1301520-000000:6 jobTerminated +2013-08-27 01:14:03,788+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=6 +2013-08-27 01:14:03,788+0000 INFO RequestHandler Handler(tag: 3159, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,788+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=6 Cpus sleeping: 1 +2013-08-27 01:14:03,788+0000 DEBUG Cpu 0827-1301520-000000:6 sleeping +2013-08-27 01:14:03,788+0000 INFO PutFileHandler Handler(tag: 371, PUT) Transfer done +2013-08-27 01:14:03,788+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:03,788+0000 INFO RequestHandler Handler(tag: 371, PUT) unregistering (send) +2013-08-27 01:14:03,788+0000 INFO Cpu 0827-1301520-000000:7 jobTerminated +2013-08-27 01:14:03,788+0000 INFO PutFileHandler Handler(tag: 3158, PUT) Transfer done +2013-08-27 01:14:03,788+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=7 +2013-08-27 01:14:03,788+0000 INFO RequestHandler Handler(tag: 3158, PUT) unregistering (send) +2013-08-27 01:14:03,789+0000 INFO RequestHandler Handler(tag: 3160, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,789+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=7 Cpus sleeping: 2 +2013-08-27 01:14:03,789+0000 DEBUG Cpu 0827-1301520-000000:7 sleeping +2013-08-27 01:14:03,789+0000 INFO RequestHandler Handler(tag: 372, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,789+0000 INFO RequestHandler Handler(tag: 373, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,789+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:03,789+0000 INFO Cpu 0827-1301520-000000:5 jobTerminated +2013-08-27 01:14:03,789+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=5 +2013-08-27 01:14:03,789+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=5 Cpus sleeping: 3 +2013-08-27 01:14:03,789+0000 INFO RequestHandler Handler(tag: 3161, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,789+0000 DEBUG Cpu 0827-1301520-000000:5 sleeping +2013-08-27 01:14:03,789+0000 INFO RequestHandler Handler(tag: 374, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,790+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:03,791+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:03,791+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:03,791+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-5cztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:03,791+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-pcztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:03,792+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-scztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:03,793+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-2dztedel thread=R-42-0-1x2-20-0 host=midway replicationGroup=null +2013-08-27 01:14:03,793+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-3dztedel thread=R-42-0-1x2-18-0 host=midway replicationGroup=null +2013-08-27 01:14:03,793+0000 DEBUG swift JOB_START jobid=runampl-2dztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0020.out, outdir/xhat_l20000_0001.0020.out, obj_outdir/obj_out_l0000_0001.0020.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0020.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/2/runampl-2dztedel host=midway +2013-08-27 01:14:03,793+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-4dztedel thread=R-42-0-1x3-0 host=midway replicationGroup=null +2013-08-27 01:14:03,793+0000 DEBUG swift JOB_START jobid=runampl-3dztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0018.out, outdir/xhat_l20000_0001.0018.out, obj_outdir/obj_out_l0000_0001.0018.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0018.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/3/runampl-3dztedel host=midway +2013-08-27 01:14:03,793+0000 DEBUG swift JOB_START jobid=runampl-4dztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0001.out, outdir/xhat_l20000_0001.0001.out, obj_outdir/obj_out_l0000_0001.0001.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0001.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/4/runampl-4dztedel host=midway +2013-08-27 01:14:03,795+0000 INFO RequestHandler Handler(tag: 34, SUBMITJOB) unregistering (send) +2013-08-27 01:14:03,795+0000 INFO RequestHandler Handler(tag: 35, SUBMITJOB) unregistering (send) +2013-08-27 01:14:03,796+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,796+0000 INFO RequestHandler Handler(tag: 3162, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,796+0000 INFO RequestHandler Handler(tag: 375, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,796+0000 INFO PutFileHandler Handler(tag: 3163, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/b/runampl-bcztedel/wrapper.error +2013-08-27 01:14:03,796+0000 INFO PutFileHandler Handler(tag: 3163, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-bcztedel.error +2013-08-27 01:14:03,796+0000 INFO PutFileCommand Sending Command(tag: 376, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,796+0000 INFO PutFileCommand Command(tag: 376, PUT) (t) sending data +2013-08-27 01:14:03,796+0000 INFO PutFileHandler Handler(tag: 3163, PUT) -> 376 +2013-08-27 01:14:03,796+0000 INFO PutFileHandler Handler(tag: 376, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/b/runampl-bcztedel/wrapper.error +2013-08-27 01:14:03,796+0000 INFO PutFileHandler Handler(tag: 376, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-bcztedel.error +2013-08-27 01:14:03,796+0000 INFO RequestHandler Handler(tag: 36, SUBMITJOB) unregistering (send) +2013-08-27 01:14:03,796+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,796+0000 INFO RequestHandler Handler(tag: 377, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,796+0000 INFO RequestHandler Handler(tag: 3164, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,796+0000 INFO PutFileHandler Handler(tag: 3165, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/b/runampl-bcztedel/wrapper.log +2013-08-27 01:14:03,796+0000 INFO PutFileHandler Handler(tag: 3165, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-bcztedel.info +2013-08-27 01:14:03,796+0000 INFO PutFileCommand Sending Command(tag: 378, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,797+0000 INFO PutFileCommand Command(tag: 378, PUT) (t) sending data +2013-08-27 01:14:03,797+0000 INFO PutFileHandler Handler(tag: 3165, PUT) -> 378 +2013-08-27 01:14:03,797+0000 INFO PutFileHandler Handler(tag: 378, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/b/runampl-bcztedel/wrapper.log +2013-08-27 01:14:03,797+0000 INFO PutFileHandler Handler(tag: 378, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-bcztedel.info +2013-08-27 01:14:03,797+0000 INFO PutFileHandler Handler(tag: 376, PUT) Transfer done +2013-08-27 01:14:03,797+0000 INFO RequestHandler Handler(tag: 376, PUT) unregistering (send) +2013-08-27 01:14:03,797+0000 INFO PutFileHandler Handler(tag: 3163, PUT) Transfer done +2013-08-27 01:14:03,797+0000 INFO RequestHandler Handler(tag: 3163, PUT) unregistering (send) +2013-08-27 01:14:03,798+0000 INFO PutFileHandler Handler(tag: 378, PUT) Transfer done +2013-08-27 01:14:03,799+0000 INFO RequestHandler Handler(tag: 378, PUT) unregistering (send) +2013-08-27 01:14:03,799+0000 INFO PutFileHandler Handler(tag: 3165, PUT) Transfer done +2013-08-27 01:14:03,799+0000 INFO RequestHandler Handler(tag: 3165, PUT) unregistering (send) +2013-08-27 01:14:03,801+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:03,801+0000 INFO Cpu 0827-1301520-000000:2 jobTerminated +2013-08-27 01:14:03,801+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=2 +2013-08-27 01:14:03,801+0000 INFO RequestHandler Handler(tag: 3166, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,801+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=2 Cpus sleeping: 4 +2013-08-27 01:14:03,801+0000 INFO Cpu 0827-1301520-000000:2 (quality: 0.5) submitting urn:1377566032080-1377566032083-1377566032084: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0001.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0001.out|outdir/xhat_l10000_000 1.0001.out|outdir/xhat_l20000_0001.0001.out|Results/ampl_res_l0000_0001.0001.out|outdir/out_l0000_0001.0001.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0001.out outdir/xhat_l20000_0001.0001.out obj_outdir/obj_out_l0000_0001.0001.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0001.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,801+0000 INFO RequestHandler Handler(tag: 379, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,801+0000 INFO RequestHandler Handler(tag: 380, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,801+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=5 Cpus sleeping: 1 +2013-08-27 01:14:03,801+0000 INFO Cpu 0827-1301520-000000:5 (quality: 0.5) submitting urn:1377566032081-1377566032086-1377566032087: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0018.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0018.out|outdir/xhat_l10000_000 1.0018.out|outdir/xhat_l20000_0001.0018.out|Results/ampl_res_l0000_0001.0018.out|outdir/out_l0000_0001.0018.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0018.out outdir/xhat_l20000_0001.0018.out obj_outdir/obj_out_l0000_0001.0018.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0018.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,802+0000 INFO RequestHandler Handler(tag: 381, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,802+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=6 Cpus sleeping: 1 +2013-08-27 01:14:03,802+0000 INFO Cpu 0827-1301520-000000:6 (quality: 0.5) submitting urn:1377566032079-1377566032089-1377566032090: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0020.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0020.out|outdir/xhat_l10000_000 1.0020.out|outdir/xhat_l20000_0001.0020.out|Results/ampl_res_l0000_0001.0020.out|outdir/out_l0000_0001.0020.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0020.out outdir/xhat_l20000_0001.0020.out obj_outdir/obj_out_l0000_0001.0020.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0020.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,802+0000 INFO RequestHandler Handler(tag: 382, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,802+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=7 Cpus sleeping: 1 +2013-08-27 01:14:03,802+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:03,802+0000 DEBUG Cpu 0827-1301520-000000:7 sleeping +2013-08-27 01:14:03,803+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-bcztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:03,803+0000 INFO RequestHandler Handler(tag: 383, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,803+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:03,803+0000 INFO RequestHandler Handler(tag: 3167, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,803+0000 INFO RequestHandler Handler(tag: 384, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,803+0000 INFO GetFileHandler Handler(tag: 3168, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:03,803+0000 INFO GetFileHandler Handler(tag: 3168, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:03,803+0000 INFO GetFileHandler Handler(tag: 3168, GET) -> 385 +2013-08-27 01:14:03,804+0000 INFO GetFileHandler Handler(tag: 385, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:03,804+0000 INFO GetFileHandler Handler(tag: 385, GET) reader: LR-Handler(tag: 385, GET) +2013-08-27 01:14:03,804+0000 INFO GetFileHandler Handler(tag: 385, GET) sending length: 1925, 60241307 +2013-08-27 01:14:03,804+0000 INFO ReadBuffer RB-LR-Handler(tag: 385, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:03,804+0000 INFO GetFileHandler Handler(tag: 3168, GET) sending length: 1925, 1010849012 +2013-08-27 01:14:03,804+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-5dztedel thread=R-42-0-1-0-3-0 host=midway replicationGroup=null +2013-08-27 01:14:03,804+0000 INFO ReadBuffer RB-LR-Handler(tag: 385, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,804+0000 INFO LocalIOProvider LR-Handler(tag: 385, GET) rbuf: RB-LR-Handler(tag: 385, GET) +2013-08-27 01:14:03,804+0000 INFO GetFileHandler Handler(tag: 385, GET) unregistering (last) +2013-08-27 01:14:03,804+0000 INFO ReadBuffer RB-LR-Handler(tag: 385, GET) de-allocating 1 buffers +2013-08-27 01:14:03,804+0000 INFO GetFileHandler Handler(tag: 3168, GET) unregistering (last) +2013-08-27 01:14:03,804+0000 DEBUG swift JOB_START jobid=runampl-5dztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0003.out, outdir/xhat_l20000_0000.0003.out, obj_outdir/obj_out_l0000_0000.0003.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0003.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/5/runampl-5dztedel host=midway +2013-08-27 01:14:03,804+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,804+0000 INFO RequestHandler Handler(tag: 3169, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,804+0000 INFO RequestHandler Handler(tag: 386, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,804+0000 INFO PutFileHandler Handler(tag: 3170, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/k/runampl-kcztedel/wrapper.error +2013-08-27 01:14:03,804+0000 INFO PutFileHandler Handler(tag: 3170, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-kcztedel.error +2013-08-27 01:14:03,804+0000 INFO PutFileCommand Sending Command(tag: 387, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,804+0000 INFO PutFileCommand Command(tag: 387, PUT) (t) sending data +2013-08-27 01:14:03,804+0000 INFO PutFileHandler Handler(tag: 3170, PUT) -> 387 +2013-08-27 01:14:03,804+0000 INFO PutFileHandler Handler(tag: 387, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/k/runampl-kcztedel/wrapper.error +2013-08-27 01:14:03,804+0000 INFO PutFileHandler Handler(tag: 387, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-kcztedel.error +2013-08-27 01:14:03,805+0000 INFO RequestHandler Handler(tag: 388, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,805+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:03,805+0000 INFO RequestHandler Handler(tag: 3171, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,805+0000 INFO RequestHandler Handler(tag: 389, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,805+0000 INFO GetFileHandler Handler(tag: 3172, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:03,805+0000 INFO GetFileHandler Handler(tag: 3172, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:03,805+0000 INFO GetFileHandler Handler(tag: 3172, GET) -> 390 +2013-08-27 01:14:03,805+0000 INFO GetFileHandler Handler(tag: 390, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:03,805+0000 INFO GetFileHandler Handler(tag: 390, GET) reader: LR-Handler(tag: 390, GET) +2013-08-27 01:14:03,805+0000 INFO GetFileHandler Handler(tag: 390, GET) sending length: 1925, 280400968 +2013-08-27 01:14:03,805+0000 INFO ReadBuffer RB-LR-Handler(tag: 390, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:03,805+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,805+0000 INFO ReadBuffer RB-LR-Handler(tag: 390, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,805+0000 INFO LocalIOProvider LR-Handler(tag: 390, GET) rbuf: RB-LR-Handler(tag: 390, GET) +2013-08-27 01:14:03,805+0000 INFO RequestHandler Handler(tag: 3173, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,805+0000 INFO GetFileHandler Handler(tag: 390, GET) unregistering (last) +2013-08-27 01:14:03,805+0000 INFO ReadBuffer RB-LR-Handler(tag: 390, GET) de-allocating 1 buffers +2013-08-27 01:14:03,805+0000 INFO RequestHandler Handler(tag: 391, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,805+0000 INFO PutFileHandler Handler(tag: 3174, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/k/runampl-kcztedel/wrapper.log +2013-08-27 01:14:03,805+0000 INFO PutFileHandler Handler(tag: 3174, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-kcztedel.info +2013-08-27 01:14:03,806+0000 INFO PutFileCommand Sending Command(tag: 392, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,806+0000 INFO PutFileCommand Command(tag: 392, PUT) (t) sending data +2013-08-27 01:14:03,806+0000 INFO PutFileHandler Handler(tag: 3174, PUT) -> 392 +2013-08-27 01:14:03,806+0000 INFO PutFileHandler Handler(tag: 392, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/k/runampl-kcztedel/wrapper.log +2013-08-27 01:14:03,806+0000 INFO PutFileHandler Handler(tag: 392, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-kcztedel.info +2013-08-27 01:14:03,806+0000 INFO RequestHandler Handler(tag: 37, SUBMITJOB) unregistering (send) +2013-08-27 01:14:03,806+0000 INFO GetFileHandler Handler(tag: 3172, GET) sending length: 1925, 1715600847 +2013-08-27 01:14:03,806+0000 INFO PutFileHandler Handler(tag: 387, PUT) Transfer done +2013-08-27 01:14:03,806+0000 INFO RequestHandler Handler(tag: 387, PUT) unregistering (send) +2013-08-27 01:14:03,806+0000 INFO PutFileHandler Handler(tag: 3170, PUT) Transfer done +2013-08-27 01:14:03,806+0000 INFO RequestHandler Handler(tag: 3170, PUT) unregistering (send) +2013-08-27 01:14:03,807+0000 INFO GetFileHandler Handler(tag: 3172, GET) unregistering (last) +2013-08-27 01:14:03,807+0000 INFO PutFileHandler Handler(tag: 392, PUT) Transfer done +2013-08-27 01:14:03,807+0000 INFO RequestHandler Handler(tag: 392, PUT) unregistering (send) +2013-08-27 01:14:03,807+0000 INFO PutFileHandler Handler(tag: 3174, PUT) Transfer done +2013-08-27 01:14:03,807+0000 INFO RequestHandler Handler(tag: 3174, PUT) unregistering (send) +2013-08-27 01:14:03,811+0000 INFO RequestHandler Handler(tag: 393, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,811+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:03,811+0000 INFO RequestHandler Handler(tag: 3175, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,811+0000 INFO RequestHandler Handler(tag: 394, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,811+0000 INFO GetFileHandler Handler(tag: 3176, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:03,811+0000 INFO GetFileHandler Handler(tag: 3176, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:03,811+0000 INFO GetFileHandler Handler(tag: 3176, GET) -> 395 +2013-08-27 01:14:03,811+0000 INFO GetFileHandler Handler(tag: 395, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:03,811+0000 INFO GetFileHandler Handler(tag: 395, GET) reader: LR-Handler(tag: 395, GET) +2013-08-27 01:14:03,811+0000 INFO GetFileHandler Handler(tag: 395, GET) sending length: 1925, 2078468944 +2013-08-27 01:14:03,811+0000 INFO GetFileHandler Handler(tag: 3176, GET) sending length: 1925, 1858539706 +2013-08-27 01:14:03,811+0000 INFO ReadBuffer RB-LR-Handler(tag: 395, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:03,811+0000 INFO ReadBuffer RB-LR-Handler(tag: 395, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,811+0000 INFO LocalIOProvider LR-Handler(tag: 395, GET) rbuf: RB-LR-Handler(tag: 395, GET) +2013-08-27 01:14:03,811+0000 INFO GetFileHandler Handler(tag: 395, GET) unregistering (last) +2013-08-27 01:14:03,812+0000 INFO ReadBuffer RB-LR-Handler(tag: 395, GET) de-allocating 1 buffers +2013-08-27 01:14:03,812+0000 INFO GetFileHandler Handler(tag: 3176, GET) unregistering (last) +2013-08-27 01:14:03,812+0000 INFO GetFileHandler Handler(tag: 3177, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:03,812+0000 INFO GetFileHandler Handler(tag: 3177, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:03,812+0000 INFO GetFileHandler Handler(tag: 3177, GET) -> 396 +2013-08-27 01:14:03,812+0000 INFO GetFileHandler Handler(tag: 396, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:03,812+0000 INFO GetFileHandler Handler(tag: 396, GET) reader: LR-Handler(tag: 396, GET) +2013-08-27 01:14:03,812+0000 INFO GetFileHandler Handler(tag: 396, GET) sending length: 14799449, 1688878172 +2013-08-27 01:14:03,812+0000 INFO GetFileHandler Handler(tag: 3177, GET) sending length: 14799449, 1684074405 +2013-08-27 01:14:03,812+0000 INFO ReadBuffer RB-LR-Handler(tag: 396, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:03,812+0000 INFO ReadBuffer RB-LR-Handler(tag: 396, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:03,812+0000 INFO LocalIOProvider LR-Handler(tag: 396, GET) rbuf: RB-LR-Handler(tag: 396, GET) +2013-08-27 01:14:03,812+0000 INFO GetFileHandler Handler(tag: 3178, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:03,812+0000 INFO GetFileHandler Handler(tag: 3178, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:03,812+0000 INFO GetFileHandler Handler(tag: 3178, GET) -> 397 +2013-08-27 01:14:03,812+0000 INFO GetFileHandler Handler(tag: 397, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:03,812+0000 INFO GetFileHandler Handler(tag: 397, GET) reader: LR-Handler(tag: 397, GET) +2013-08-27 01:14:03,812+0000 INFO GetFileHandler Handler(tag: 397, GET) sending length: 14799449, 128557122 +2013-08-27 01:14:03,812+0000 INFO ReadBuffer RB-LR-Handler(tag: 397, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:03,812+0000 INFO GetFileHandler Handler(tag: 3178, GET) sending length: 14799449, 291000572 +2013-08-27 01:14:03,812+0000 INFO ReadBuffer RB-LR-Handler(tag: 397, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:03,812+0000 INFO LocalIOProvider LR-Handler(tag: 397, GET) rbuf: RB-LR-Handler(tag: 397, GET) +2013-08-27 01:14:03,813+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:03,813+0000 INFO Cpu 0827-1301520-000000:4 jobTerminated +2013-08-27 01:14:03,813+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=4 +2013-08-27 01:14:03,813+0000 INFO RequestHandler Handler(tag: 3179, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,813+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=4 Cpus sleeping: 2 +2013-08-27 01:14:03,813+0000 INFO Cpu 0827-1301520-000000:4 (quality: 0.5) submitting urn:1377566032095-1377566032097-1377566032098: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0003.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0003.out|outdir/xhat_l10000_000 0.0003.out|outdir/xhat_l20000_0000.0003.out|Results/ampl_res_l0000_0000.0003.out|outdir/out_l0000_0000.0003.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0003.out outdir/xhat_l20000_0000.0003.out obj_outdir/obj_out_l0000_0000.0003.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0003.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,813+0000 INFO GetFileHandler Handler(tag: 3180, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:03,813+0000 INFO RequestHandler Handler(tag: 398, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,813+0000 INFO GetFileHandler Handler(tag: 3180, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:03,813+0000 INFO GetFileHandler Handler(tag: 3180, GET) -> 400 +2013-08-27 01:14:03,813+0000 INFO RequestHandler Handler(tag: 399, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,813+0000 INFO GetFileHandler Handler(tag: 400, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:03,813+0000 INFO GetFileHandler Handler(tag: 400, GET) reader: LR-Handler(tag: 400, GET) +2013-08-27 01:14:03,813+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=7 Cpus sleeping: 1 +2013-08-27 01:14:03,813+0000 INFO GetFileHandler Handler(tag: 400, GET) sending length: 14799449, 1001004128 +2013-08-27 01:14:03,813+0000 DEBUG Cpu 0827-1301520-000000:7 sleeping +2013-08-27 01:14:03,813+0000 INFO GetFileHandler Handler(tag: 3180, GET) sending length: 14799449, 489488698 +2013-08-27 01:14:03,813+0000 INFO ReadBuffer RB-LR-Handler(tag: 400, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:03,813+0000 INFO ReadBuffer RB-LR-Handler(tag: 400, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:03,813+0000 INFO LocalIOProvider LR-Handler(tag: 400, GET) rbuf: RB-LR-Handler(tag: 400, GET) +2013-08-27 01:14:03,814+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:03,815+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-kcztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:03,816+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-6dztedel thread=R-42-0-1x2-8-0 host=midway replicationGroup=null +2013-08-27 01:14:03,816+0000 DEBUG swift JOB_START jobid=runampl-6dztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0008.out, outdir/xhat_l20000_0001.0008.out, obj_outdir/obj_out_l0000_0001.0008.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0008.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/6/runampl-6dztedel host=midway +2013-08-27 01:14:03,818+0000 INFO RequestHandler Handler(tag: 38, SUBMITJOB) unregistering (send) +2013-08-27 01:14:03,824+0000 INFO RequestHandler Handler(tag: 401, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,824+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:03,824+0000 INFO RequestHandler Handler(tag: 3181, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,824+0000 INFO RequestHandler Handler(tag: 402, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,824+0000 INFO GetFileHandler Handler(tag: 3182, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:03,824+0000 INFO GetFileHandler Handler(tag: 3182, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:03,825+0000 INFO GetFileHandler Handler(tag: 3182, GET) -> 403 +2013-08-27 01:14:03,825+0000 INFO GetFileHandler Handler(tag: 403, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:03,825+0000 INFO GetFileHandler Handler(tag: 403, GET) reader: LR-Handler(tag: 403, GET) +2013-08-27 01:14:03,825+0000 INFO GetFileHandler Handler(tag: 403, GET) sending length: 1925, 376821660 +2013-08-27 01:14:03,825+0000 INFO ReadBuffer RB-LR-Handler(tag: 403, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:03,825+0000 INFO ReadBuffer RB-LR-Handler(tag: 403, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:03,825+0000 INFO LocalIOProvider LR-Handler(tag: 403, GET) rbuf: RB-LR-Handler(tag: 403, GET) +2013-08-27 01:14:03,825+0000 INFO GetFileHandler Handler(tag: 403, GET) unregistering (last) +2013-08-27 01:14:03,825+0000 INFO ReadBuffer RB-LR-Handler(tag: 403, GET) de-allocating 1 buffers +2013-08-27 01:14:03,825+0000 INFO GetFileHandler Handler(tag: 3182, GET) sending length: 1925, 1462084651 +2013-08-27 01:14:03,825+0000 INFO GetFileHandler Handler(tag: 3182, GET) unregistering (last) +2013-08-27 01:14:03,834+0000 INFO ProxyIOProvider Command(tag: 396, GET) suspending +2013-08-27 01:14:03,834+0000 INFO GetFileHandler Handler(tag: 396, GET) suspending +2013-08-27 01:14:03,834+0000 INFO ProxyIOProvider Command(tag: 397, GET) suspending +2013-08-27 01:14:03,834+0000 INFO GetFileHandler Handler(tag: 397, GET) suspending +2013-08-27 01:14:03,834+0000 INFO ProxyIOProvider Command(tag: 400, GET) suspending +2013-08-27 01:14:03,834+0000 INFO GetFileHandler Handler(tag: 400, GET) suspending +2013-08-27 01:14:03,834+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,834+0000 INFO RequestHandler Handler(tag: 3183, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,834+0000 INFO RequestHandler Handler(tag: 404, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,834+0000 INFO PutFileHandler Handler(tag: 3184, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/m/runampl-mcztedel/wrapper.error +2013-08-27 01:14:03,834+0000 INFO PutFileHandler Handler(tag: 3184, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-mcztedel.error +2013-08-27 01:14:03,835+0000 INFO PutFileCommand Sending Command(tag: 405, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,835+0000 INFO PutFileCommand Command(tag: 405, PUT) (t) sending data +2013-08-27 01:14:03,835+0000 INFO PutFileHandler Handler(tag: 3184, PUT) -> 405 +2013-08-27 01:14:03,835+0000 INFO PutFileHandler Handler(tag: 405, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/m/runampl-mcztedel/wrapper.error +2013-08-27 01:14:03,835+0000 INFO PutFileHandler Handler(tag: 405, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-mcztedel.error +2013-08-27 01:14:03,835+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,835+0000 INFO RequestHandler Handler(tag: 3185, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,835+0000 INFO RequestHandler Handler(tag: 406, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,835+0000 INFO PutFileHandler Handler(tag: 3186, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/m/runampl-mcztedel/wrapper.log +2013-08-27 01:14:03,835+0000 INFO PutFileHandler Handler(tag: 3186, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-mcztedel.info +2013-08-27 01:14:03,835+0000 INFO PutFileCommand Sending Command(tag: 407, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,835+0000 INFO PutFileCommand Command(tag: 407, PUT) (t) sending data +2013-08-27 01:14:03,835+0000 INFO PutFileHandler Handler(tag: 3186, PUT) -> 407 +2013-08-27 01:14:03,835+0000 INFO PutFileHandler Handler(tag: 407, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/m/runampl-mcztedel/wrapper.log +2013-08-27 01:14:03,835+0000 INFO PutFileHandler Handler(tag: 407, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-mcztedel.info +2013-08-27 01:14:03,836+0000 INFO PutFileHandler Handler(tag: 405, PUT) Transfer done +2013-08-27 01:14:03,836+0000 INFO RequestHandler Handler(tag: 405, PUT) unregistering (send) +2013-08-27 01:14:03,836+0000 INFO PutFileHandler Handler(tag: 3184, PUT) Transfer done +2013-08-27 01:14:03,836+0000 INFO RequestHandler Handler(tag: 3184, PUT) unregistering (send) +2013-08-27 01:14:03,837+0000 INFO PutFileHandler Handler(tag: 407, PUT) Transfer done +2013-08-27 01:14:03,837+0000 INFO RequestHandler Handler(tag: 407, PUT) unregistering (send) +2013-08-27 01:14:03,837+0000 INFO PutFileHandler Handler(tag: 3186, PUT) Transfer done +2013-08-27 01:14:03,837+0000 INFO RequestHandler Handler(tag: 3186, PUT) unregistering (send) +2013-08-27 01:14:03,863+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=7 Cpus sleeping: 1 +2013-08-27 01:14:03,863+0000 INFO Cpu 0827-1301520-000000:7 (quality: 0.5) submitting urn:1377566032103-1377566032105-1377566032106: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0008.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0008.out|outdir/xhat_l10000_000 1.0008.out|outdir/xhat_l20000_0001.0008.out|Results/ampl_res_l0000_0001.0008.out|outdir/out_l0000_0001.0008.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0008.out outdir/xhat_l20000_0001.0008.out obj_outdir/obj_out_l0000_0001.0008.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0008.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:03,864+0000 INFO RequestHandler Handler(tag: 408, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,864+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,864+0000 INFO RequestHandler Handler(tag: 3187, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,864+0000 INFO RequestHandler Handler(tag: 409, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,864+0000 INFO PutFileHandler Handler(tag: 3188, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/x/runampl-xcztedel/wrapper.log +2013-08-27 01:14:03,864+0000 INFO PutFileHandler Handler(tag: 3188, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-xcztedel.info +2013-08-27 01:14:03,864+0000 INFO PutFileCommand Sending Command(tag: 410, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,864+0000 INFO PutFileCommand Command(tag: 410, PUT) (t) sending data +2013-08-27 01:14:03,864+0000 INFO PutFileHandler Handler(tag: 3188, PUT) -> 410 +2013-08-27 01:14:03,864+0000 INFO PutFileHandler Handler(tag: 410, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/x/runampl-xcztedel/wrapper.log +2013-08-27 01:14:03,864+0000 INFO PutFileHandler Handler(tag: 410, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-xcztedel.info +2013-08-27 01:14:03,865+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,865+0000 INFO RequestHandler Handler(tag: 3189, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,865+0000 INFO RequestHandler Handler(tag: 411, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,865+0000 INFO PutFileHandler Handler(tag: 3190, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/x/runampl-xcztedel/wrapper.error +2013-08-27 01:14:03,865+0000 INFO PutFileHandler Handler(tag: 3190, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-xcztedel.error +2013-08-27 01:14:03,865+0000 INFO PutFileCommand Sending Command(tag: 412, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,865+0000 INFO PutFileCommand Command(tag: 412, PUT) (t) sending data +2013-08-27 01:14:03,865+0000 INFO PutFileHandler Handler(tag: 3190, PUT) -> 412 +2013-08-27 01:14:03,865+0000 INFO PutFileHandler Handler(tag: 412, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/x/runampl-xcztedel/wrapper.error +2013-08-27 01:14:03,865+0000 INFO PutFileHandler Handler(tag: 412, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-xcztedel.error +2013-08-27 01:14:03,866+0000 INFO PutFileHandler Handler(tag: 410, PUT) Transfer done +2013-08-27 01:14:03,866+0000 INFO RequestHandler Handler(tag: 410, PUT) unregistering (send) +2013-08-27 01:14:03,866+0000 INFO PutFileHandler Handler(tag: 3188, PUT) Transfer done +2013-08-27 01:14:03,866+0000 INFO RequestHandler Handler(tag: 3188, PUT) unregistering (send) +2013-08-27 01:14:03,866+0000 INFO PutFileHandler Handler(tag: 412, PUT) Transfer done +2013-08-27 01:14:03,866+0000 INFO RequestHandler Handler(tag: 412, PUT) unregistering (send) +2013-08-27 01:14:03,866+0000 INFO PutFileHandler Handler(tag: 3190, PUT) Transfer done +2013-08-27 01:14:03,866+0000 INFO RequestHandler Handler(tag: 3190, PUT) unregistering (send) +2013-08-27 01:14:03,886+0000 INFO ThrottleManager O maxBuffers=1024, crtBuffers=786, allowedTransfers=0, active=0, suspended=0 +2013-08-27 01:14:03,886+0000 INFO ThrottleManager mem=164.43 MB, heap=399.81 MB, maxHeap=910.25 MB +2013-08-27 01:14:03,892+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,892+0000 INFO RequestHandler Handler(tag: 3191, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,892+0000 INFO RequestHandler Handler(tag: 413, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,892+0000 INFO PutFileHandler Handler(tag: 3192, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/1/runampl-1dztedel/wrapper.log +2013-08-27 01:14:03,892+0000 INFO PutFileHandler Handler(tag: 3192, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-1dztedel.info +2013-08-27 01:14:03,892+0000 INFO PutFileCommand Sending Command(tag: 414, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,892+0000 INFO PutFileCommand Command(tag: 414, PUT) (t) sending data +2013-08-27 01:14:03,892+0000 INFO PutFileHandler Handler(tag: 3192, PUT) -> 414 +2013-08-27 01:14:03,892+0000 INFO PutFileHandler Handler(tag: 414, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/1/runampl-1dztedel/wrapper.log +2013-08-27 01:14:03,892+0000 INFO PutFileHandler Handler(tag: 414, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-1dztedel.info +2013-08-27 01:14:03,893+0000 INFO ThrottleManager I maxBuffers=1024, crtBuffers=25, allowedTransfers=237, active=0, suspended=0 +2013-08-27 01:14:03,893+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,893+0000 INFO RequestHandler Handler(tag: 3193, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,893+0000 INFO RequestHandler Handler(tag: 415, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,893+0000 INFO PutFileHandler Handler(tag: 3194, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/1/runampl-1dztedel/wrapper.error +2013-08-27 01:14:03,893+0000 INFO PutFileHandler Handler(tag: 3194, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-1dztedel.error +2013-08-27 01:14:03,893+0000 INFO PutFileCommand Sending Command(tag: 416, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,893+0000 INFO PutFileCommand Command(tag: 416, PUT) (t) sending data +2013-08-27 01:14:03,893+0000 INFO PutFileHandler Handler(tag: 3194, PUT) -> 416 +2013-08-27 01:14:03,893+0000 INFO PutFileHandler Handler(tag: 416, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/1/runampl-1dztedel/wrapper.error +2013-08-27 01:14:03,893+0000 INFO PutFileHandler Handler(tag: 416, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-1dztedel.error +2013-08-27 01:14:03,893+0000 INFO PutFileHandler Handler(tag: 414, PUT) Transfer done +2013-08-27 01:14:03,893+0000 INFO RequestHandler Handler(tag: 414, PUT) unregistering (send) +2013-08-27 01:14:03,893+0000 INFO PutFileHandler Handler(tag: 3192, PUT) Transfer done +2013-08-27 01:14:03,893+0000 INFO RequestHandler Handler(tag: 3192, PUT) unregistering (send) +2013-08-27 01:14:03,894+0000 INFO PutFileHandler Handler(tag: 416, PUT) Transfer done +2013-08-27 01:14:03,894+0000 INFO RequestHandler Handler(tag: 416, PUT) unregistering (send) +2013-08-27 01:14:03,894+0000 INFO PutFileHandler Handler(tag: 3194, PUT) Transfer done +2013-08-27 01:14:03,894+0000 INFO RequestHandler Handler(tag: 3194, PUT) unregistering (send) +2013-08-27 01:14:03,922+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,922+0000 INFO RequestHandler Handler(tag: 3195, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,922+0000 INFO RequestHandler Handler(tag: 417, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,922+0000 INFO PutFileHandler Handler(tag: 3196, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/u/runampl-ucztedel/wrapper.error +2013-08-27 01:14:03,922+0000 INFO PutFileHandler Handler(tag: 3196, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ucztedel.error +2013-08-27 01:14:03,922+0000 INFO PutFileCommand Sending Command(tag: 418, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,922+0000 INFO PutFileCommand Command(tag: 418, PUT) (t) sending data +2013-08-27 01:14:03,922+0000 INFO PutFileHandler Handler(tag: 3196, PUT) -> 418 +2013-08-27 01:14:03,922+0000 INFO PutFileHandler Handler(tag: 418, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/u/runampl-ucztedel/wrapper.error +2013-08-27 01:14:03,922+0000 INFO PutFileHandler Handler(tag: 418, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ucztedel.error +2013-08-27 01:14:03,922+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,922+0000 INFO RequestHandler Handler(tag: 3197, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,922+0000 INFO RequestHandler Handler(tag: 419, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,922+0000 INFO PutFileHandler Handler(tag: 418, PUT) Transfer done +2013-08-27 01:14:03,922+0000 INFO RequestHandler Handler(tag: 418, PUT) unregistering (send) +2013-08-27 01:14:03,922+0000 INFO PutFileHandler Handler(tag: 3198, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/u/runampl-ucztedel/wrapper.log +2013-08-27 01:14:03,922+0000 INFO PutFileHandler Handler(tag: 3196, PUT) Transfer done +2013-08-27 01:14:03,922+0000 INFO PutFileHandler Handler(tag: 3198, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ucztedel.info +2013-08-27 01:14:03,922+0000 INFO RequestHandler Handler(tag: 3196, PUT) unregistering (send) +2013-08-27 01:14:03,922+0000 INFO PutFileCommand Sending Command(tag: 420, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,922+0000 INFO PutFileCommand Command(tag: 420, PUT) (t) sending data +2013-08-27 01:14:03,922+0000 INFO PutFileHandler Handler(tag: 3198, PUT) -> 420 +2013-08-27 01:14:03,922+0000 INFO PutFileHandler Handler(tag: 420, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/u/runampl-ucztedel/wrapper.log +2013-08-27 01:14:03,922+0000 INFO PutFileHandler Handler(tag: 420, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ucztedel.info +2013-08-27 01:14:03,923+0000 INFO PutFileHandler Handler(tag: 420, PUT) Transfer done +2013-08-27 01:14:03,923+0000 INFO RequestHandler Handler(tag: 420, PUT) unregistering (send) +2013-08-27 01:14:03,923+0000 INFO PutFileHandler Handler(tag: 3198, PUT) Transfer done +2013-08-27 01:14:03,923+0000 INFO RequestHandler Handler(tag: 3198, PUT) unregistering (send) +2013-08-27 01:14:03,936+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,936+0000 INFO RequestHandler Handler(tag: 3199, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,936+0000 INFO RequestHandler Handler(tag: 421, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,936+0000 INFO PutFileHandler Handler(tag: 3200, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/0/runampl-0dztedel/wrapper.log +2013-08-27 01:14:03,936+0000 INFO PutFileHandler Handler(tag: 3200, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-0dztedel.info +2013-08-27 01:14:03,936+0000 INFO PutFileCommand Sending Command(tag: 422, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,936+0000 INFO PutFileCommand Command(tag: 422, PUT) (t) sending data +2013-08-27 01:14:03,936+0000 INFO PutFileHandler Handler(tag: 422, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/0/runampl-0dztedel/wrapper.log +2013-08-27 01:14:03,936+0000 INFO PutFileHandler Handler(tag: 3200, PUT) -> 422 +2013-08-27 01:14:03,936+0000 INFO PutFileHandler Handler(tag: 422, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-0dztedel.info +2013-08-27 01:14:03,936+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,936+0000 INFO RequestHandler Handler(tag: 3201, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,936+0000 INFO RequestHandler Handler(tag: 423, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,936+0000 INFO PutFileHandler Handler(tag: 3202, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/y/runampl-ycztedel/wrapper.error +2013-08-27 01:14:03,936+0000 INFO PutFileHandler Handler(tag: 3202, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ycztedel.error +2013-08-27 01:14:03,936+0000 INFO PutFileCommand Sending Command(tag: 424, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,937+0000 INFO PutFileCommand Command(tag: 424, PUT) (t) sending data +2013-08-27 01:14:03,937+0000 INFO PutFileHandler Handler(tag: 3202, PUT) -> 424 +2013-08-27 01:14:03,937+0000 INFO PutFileHandler Handler(tag: 424, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/y/runampl-ycztedel/wrapper.error +2013-08-27 01:14:03,937+0000 INFO PutFileHandler Handler(tag: 424, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ycztedel.error +2013-08-27 01:14:03,937+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,937+0000 INFO RequestHandler Handler(tag: 3203, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,937+0000 INFO PutFileHandler Handler(tag: 424, PUT) Transfer done +2013-08-27 01:14:03,937+0000 INFO RequestHandler Handler(tag: 425, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,937+0000 INFO RequestHandler Handler(tag: 424, PUT) unregistering (send) +2013-08-27 01:14:03,937+0000 INFO PutFileHandler Handler(tag: 3202, PUT) Transfer done +2013-08-27 01:14:03,937+0000 INFO PutFileHandler Handler(tag: 3204, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/c/runampl-ccztedel/wrapper.log +2013-08-27 01:14:03,937+0000 INFO RequestHandler Handler(tag: 3202, PUT) unregistering (send) +2013-08-27 01:14:03,937+0000 INFO PutFileHandler Handler(tag: 3204, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ccztedel.info +2013-08-27 01:14:03,937+0000 INFO PutFileCommand Sending Command(tag: 426, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,937+0000 INFO PutFileCommand Command(tag: 426, PUT) (t) sending data +2013-08-27 01:14:03,937+0000 INFO PutFileHandler Handler(tag: 3204, PUT) -> 426 +2013-08-27 01:14:03,937+0000 INFO PutFileHandler Handler(tag: 426, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/c/runampl-ccztedel/wrapper.log +2013-08-27 01:14:03,937+0000 INFO PutFileHandler Handler(tag: 426, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ccztedel.info +2013-08-27 01:14:03,937+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,937+0000 INFO RequestHandler Handler(tag: 3205, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,937+0000 INFO RequestHandler Handler(tag: 427, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,937+0000 INFO PutFileHandler Handler(tag: 3206, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/i/runampl-icztedel/wrapper.error +2013-08-27 01:14:03,937+0000 INFO PutFileHandler Handler(tag: 3206, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-icztedel.error +2013-08-27 01:14:03,937+0000 INFO PutFileCommand Sending Command(tag: 428, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,937+0000 INFO PutFileCommand Command(tag: 428, PUT) (t) sending data +2013-08-27 01:14:03,937+0000 INFO PutFileHandler Handler(tag: 3206, PUT) -> 428 +2013-08-27 01:14:03,937+0000 INFO PutFileHandler Handler(tag: 428, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/i/runampl-icztedel/wrapper.error +2013-08-27 01:14:03,937+0000 INFO PutFileHandler Handler(tag: 428, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-icztedel.error +2013-08-27 01:14:03,938+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,938+0000 INFO RequestHandler Handler(tag: 3207, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,938+0000 INFO PutFileHandler Handler(tag: 428, PUT) Transfer done +2013-08-27 01:14:03,938+0000 INFO RequestHandler Handler(tag: 429, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,938+0000 INFO RequestHandler Handler(tag: 428, PUT) unregistering (send) +2013-08-27 01:14:03,938+0000 INFO PutFileHandler Handler(tag: 3206, PUT) Transfer done +2013-08-27 01:14:03,938+0000 INFO RequestHandler Handler(tag: 3206, PUT) unregistering (send) +2013-08-27 01:14:03,938+0000 INFO PutFileHandler Handler(tag: 3208, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/z/runampl-zcztedel/wrapper.error +2013-08-27 01:14:03,938+0000 INFO PutFileHandler Handler(tag: 3208, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-zcztedel.error +2013-08-27 01:14:03,938+0000 INFO PutFileCommand Sending Command(tag: 430, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,938+0000 INFO PutFileCommand Command(tag: 430, PUT) (t) sending data +2013-08-27 01:14:03,938+0000 INFO PutFileHandler Handler(tag: 3208, PUT) -> 430 +2013-08-27 01:14:03,938+0000 INFO PutFileHandler Handler(tag: 430, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/z/runampl-zcztedel/wrapper.error +2013-08-27 01:14:03,938+0000 INFO PutFileHandler Handler(tag: 430, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-zcztedel.error +2013-08-27 01:14:03,939+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,939+0000 INFO RequestHandler Handler(tag: 3209, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,939+0000 INFO RequestHandler Handler(tag: 431, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,939+0000 INFO PutFileHandler Handler(tag: 3210, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/v/runampl-vcztedel/wrapper.error +2013-08-27 01:14:03,939+0000 INFO PutFileHandler Handler(tag: 430, PUT) Transfer done +2013-08-27 01:14:03,939+0000 INFO PutFileHandler Handler(tag: 3210, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-vcztedel.error +2013-08-27 01:14:03,939+0000 INFO RequestHandler Handler(tag: 430, PUT) unregistering (send) +2013-08-27 01:14:03,939+0000 INFO PutFileHandler Handler(tag: 3208, PUT) Transfer done +2013-08-27 01:14:03,939+0000 INFO PutFileCommand Sending Command(tag: 432, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,939+0000 INFO RequestHandler Handler(tag: 3208, PUT) unregistering (send) +2013-08-27 01:14:03,939+0000 INFO PutFileHandler Handler(tag: 432, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/v/runampl-vcztedel/wrapper.error +2013-08-27 01:14:03,939+0000 INFO PutFileCommand Command(tag: 432, PUT) (t) sending data +2013-08-27 01:14:03,939+0000 INFO PutFileHandler Handler(tag: 432, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-vcztedel.error +2013-08-27 01:14:03,939+0000 INFO PutFileHandler Handler(tag: 3210, PUT) -> 432 +2013-08-27 01:14:03,939+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,939+0000 INFO PutFileHandler Handler(tag: 432, PUT) Transfer done +2013-08-27 01:14:03,939+0000 INFO RequestHandler Handler(tag: 3211, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,939+0000 INFO RequestHandler Handler(tag: 432, PUT) unregistering (send) +2013-08-27 01:14:03,939+0000 INFO RequestHandler Handler(tag: 433, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,939+0000 INFO PutFileHandler Handler(tag: 3210, PUT) Transfer done +2013-08-27 01:14:03,939+0000 INFO RequestHandler Handler(tag: 3210, PUT) unregistering (send) +2013-08-27 01:14:03,939+0000 INFO PutFileHandler Handler(tag: 3212, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/y/runampl-ycztedel/wrapper.log +2013-08-27 01:14:03,939+0000 INFO PutFileHandler Handler(tag: 3212, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ycztedel.info +2013-08-27 01:14:03,939+0000 INFO PutFileCommand Sending Command(tag: 434, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,939+0000 INFO PutFileCommand Command(tag: 434, PUT) (t) sending data +2013-08-27 01:14:03,939+0000 INFO PutFileHandler Handler(tag: 422, PUT) Transfer done +2013-08-27 01:14:03,939+0000 INFO PutFileHandler Handler(tag: 3212, PUT) -> 434 +2013-08-27 01:14:03,939+0000 INFO PutFileHandler Handler(tag: 434, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/y/runampl-ycztedel/wrapper.log +2013-08-27 01:14:03,939+0000 INFO RequestHandler Handler(tag: 422, PUT) unregistering (send) +2013-08-27 01:14:03,939+0000 INFO PutFileHandler Handler(tag: 434, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ycztedel.info +2013-08-27 01:14:03,939+0000 INFO PutFileHandler Handler(tag: 3200, PUT) Transfer done +2013-08-27 01:14:03,939+0000 INFO RequestHandler Handler(tag: 3200, PUT) unregistering (send) +2013-08-27 01:14:03,940+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,940+0000 INFO RequestHandler Handler(tag: 435, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,940+0000 INFO RequestHandler Handler(tag: 3213, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,940+0000 INFO PutFileHandler Handler(tag: 3214, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/i/runampl-icztedel/wrapper.log +2013-08-27 01:14:03,940+0000 INFO PutFileHandler Handler(tag: 3214, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-icztedel.info +2013-08-27 01:14:03,940+0000 INFO PutFileCommand Sending Command(tag: 436, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,940+0000 INFO PutFileCommand Command(tag: 436, PUT) (t) sending data +2013-08-27 01:14:03,940+0000 INFO PutFileHandler Handler(tag: 3214, PUT) -> 436 +2013-08-27 01:14:03,940+0000 INFO PutFileHandler Handler(tag: 436, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/i/runampl-icztedel/wrapper.log +2013-08-27 01:14:03,940+0000 INFO PutFileHandler Handler(tag: 436, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-icztedel.info +2013-08-27 01:14:03,940+0000 INFO PutFileHandler Handler(tag: 426, PUT) Transfer done +2013-08-27 01:14:03,940+0000 INFO RequestHandler Handler(tag: 426, PUT) unregistering (send) +2013-08-27 01:14:03,940+0000 INFO PutFileHandler Handler(tag: 3204, PUT) Transfer done +2013-08-27 01:14:03,940+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,940+0000 INFO RequestHandler Handler(tag: 3204, PUT) unregistering (send) +2013-08-27 01:14:03,940+0000 INFO RequestHandler Handler(tag: 3215, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,940+0000 INFO RequestHandler Handler(tag: 437, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,940+0000 INFO PutFileHandler Handler(tag: 3216, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/z/runampl-zcztedel/wrapper.log +2013-08-27 01:14:03,940+0000 INFO PutFileHandler Handler(tag: 3216, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-zcztedel.info +2013-08-27 01:14:03,940+0000 INFO PutFileCommand Sending Command(tag: 438, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,940+0000 INFO PutFileCommand Command(tag: 438, PUT) (t) sending data +2013-08-27 01:14:03,940+0000 INFO PutFileHandler Handler(tag: 3216, PUT) -> 438 +2013-08-27 01:14:03,940+0000 INFO PutFileHandler Handler(tag: 438, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/z/runampl-zcztedel/wrapper.log +2013-08-27 01:14:03,940+0000 INFO PutFileHandler Handler(tag: 438, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-zcztedel.info +2013-08-27 01:14:03,940+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,940+0000 INFO RequestHandler Handler(tag: 3217, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,940+0000 INFO RequestHandler Handler(tag: 439, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,940+0000 INFO PutFileHandler Handler(tag: 3218, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/v/runampl-vcztedel/wrapper.log +2013-08-27 01:14:03,940+0000 INFO PutFileHandler Handler(tag: 3218, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-vcztedel.info +2013-08-27 01:14:03,941+0000 INFO PutFileCommand Sending Command(tag: 440, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,941+0000 INFO PutFileCommand Command(tag: 440, PUT) (t) sending data +2013-08-27 01:14:03,941+0000 INFO PutFileHandler Handler(tag: 3218, PUT) -> 440 +2013-08-27 01:14:03,941+0000 INFO PutFileHandler Handler(tag: 440, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/v/runampl-vcztedel/wrapper.log +2013-08-27 01:14:03,941+0000 INFO PutFileHandler Handler(tag: 440, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-vcztedel.info +2013-08-27 01:14:03,941+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,941+0000 INFO RequestHandler Handler(tag: 3219, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,941+0000 INFO RequestHandler Handler(tag: 441, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,941+0000 INFO PutFileHandler Handler(tag: 3220, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/0/runampl-0dztedel/wrapper.error +2013-08-27 01:14:03,941+0000 INFO PutFileHandler Handler(tag: 3220, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-0dztedel.error +2013-08-27 01:14:03,941+0000 INFO PutFileCommand Sending Command(tag: 442, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,941+0000 INFO PutFileCommand Command(tag: 442, PUT) (t) sending data +2013-08-27 01:14:03,941+0000 INFO PutFileHandler Handler(tag: 3220, PUT) -> 442 +2013-08-27 01:14:03,941+0000 INFO PutFileHandler Handler(tag: 442, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/0/runampl-0dztedel/wrapper.error +2013-08-27 01:14:03,941+0000 INFO PutFileHandler Handler(tag: 442, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-0dztedel.error +2013-08-27 01:14:03,941+0000 INFO PutFileHandler Handler(tag: 442, PUT) Transfer done +2013-08-27 01:14:03,941+0000 INFO RequestHandler Handler(tag: 442, PUT) unregistering (send) +2013-08-27 01:14:03,941+0000 INFO PutFileHandler Handler(tag: 3220, PUT) Transfer done +2013-08-27 01:14:03,941+0000 INFO RequestHandler Handler(tag: 3220, PUT) unregistering (send) +2013-08-27 01:14:03,943+0000 INFO PutFileHandler Handler(tag: 434, PUT) Transfer done +2013-08-27 01:14:03,943+0000 INFO RequestHandler Handler(tag: 434, PUT) unregistering (send) +2013-08-27 01:14:03,943+0000 INFO PutFileHandler Handler(tag: 3212, PUT) Transfer done +2013-08-27 01:14:03,943+0000 INFO RequestHandler Handler(tag: 3212, PUT) unregistering (send) +2013-08-27 01:14:03,946+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,946+0000 INFO RequestHandler Handler(tag: 3221, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,946+0000 INFO RequestHandler Handler(tag: 443, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,946+0000 INFO PutFileHandler Handler(tag: 3222, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/c/runampl-ccztedel/wrapper.error +2013-08-27 01:14:03,946+0000 INFO PutFileHandler Handler(tag: 3222, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ccztedel.error +2013-08-27 01:14:03,946+0000 INFO PutFileCommand Sending Command(tag: 444, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,946+0000 INFO PutFileCommand Command(tag: 444, PUT) (t) sending data +2013-08-27 01:14:03,946+0000 INFO PutFileHandler Handler(tag: 3222, PUT) -> 444 +2013-08-27 01:14:03,946+0000 INFO PutFileHandler Handler(tag: 444, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/c/runampl-ccztedel/wrapper.error +2013-08-27 01:14:03,946+0000 INFO PutFileHandler Handler(tag: 444, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ccztedel.error +2013-08-27 01:14:03,946+0000 INFO PutFileHandler Handler(tag: 444, PUT) Transfer done +2013-08-27 01:14:03,946+0000 INFO RequestHandler Handler(tag: 444, PUT) unregistering (send) +2013-08-27 01:14:03,946+0000 INFO PutFileHandler Handler(tag: 3222, PUT) Transfer done +2013-08-27 01:14:03,946+0000 INFO RequestHandler Handler(tag: 3222, PUT) unregistering (send) +2013-08-27 01:14:03,949+0000 INFO PutFileHandler Handler(tag: 436, PUT) Transfer done +2013-08-27 01:14:03,949+0000 INFO RequestHandler Handler(tag: 436, PUT) unregistering (send) +2013-08-27 01:14:03,949+0000 INFO PutFileHandler Handler(tag: 3214, PUT) Transfer done +2013-08-27 01:14:03,949+0000 INFO RequestHandler Handler(tag: 3214, PUT) unregistering (send) +2013-08-27 01:14:03,952+0000 INFO PutFileHandler Handler(tag: 438, PUT) Transfer done +2013-08-27 01:14:03,952+0000 INFO RequestHandler Handler(tag: 438, PUT) unregistering (send) +2013-08-27 01:14:03,952+0000 INFO PutFileHandler Handler(tag: 3216, PUT) Transfer done +2013-08-27 01:14:03,952+0000 INFO RequestHandler Handler(tag: 3216, PUT) unregistering (send) +2013-08-27 01:14:03,955+0000 INFO PutFileHandler Handler(tag: 440, PUT) Transfer done +2013-08-27 01:14:03,955+0000 INFO RequestHandler Handler(tag: 440, PUT) unregistering (send) +2013-08-27 01:14:03,955+0000 INFO PutFileHandler Handler(tag: 3218, PUT) Transfer done +2013-08-27 01:14:03,955+0000 INFO RequestHandler Handler(tag: 3218, PUT) unregistering (send) +2013-08-27 01:14:03,958+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,958+0000 INFO RequestHandler Handler(tag: 3223, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,958+0000 INFO RequestHandler Handler(tag: 445, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,958+0000 INFO PutFileHandler Handler(tag: 3224, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/t/runampl-tcztedel/wrapper.log +2013-08-27 01:14:03,958+0000 INFO PutFileHandler Handler(tag: 3224, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-tcztedel.info +2013-08-27 01:14:03,958+0000 INFO PutFileCommand Sending Command(tag: 446, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,958+0000 INFO PutFileCommand Command(tag: 446, PUT) (t) sending data +2013-08-27 01:14:03,958+0000 INFO PutFileHandler Handler(tag: 3224, PUT) -> 446 +2013-08-27 01:14:03,958+0000 INFO PutFileHandler Handler(tag: 446, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/t/runampl-tcztedel/wrapper.log +2013-08-27 01:14:03,958+0000 INFO PutFileHandler Handler(tag: 446, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-tcztedel.info +2013-08-27 01:14:03,959+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:03,959+0000 INFO RequestHandler Handler(tag: 3225, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,959+0000 INFO RequestHandler Handler(tag: 447, JOBSTATUS) unregistering (send) +2013-08-27 01:14:03,959+0000 INFO PutFileHandler Handler(tag: 446, PUT) Transfer done +2013-08-27 01:14:03,959+0000 INFO RequestHandler Handler(tag: 446, PUT) unregistering (send) +2013-08-27 01:14:03,959+0000 INFO PutFileHandler Handler(tag: 3224, PUT) Transfer done +2013-08-27 01:14:03,959+0000 INFO PutFileHandler Handler(tag: 3226, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/t/runampl-tcztedel/wrapper.error +2013-08-27 01:14:03,959+0000 INFO RequestHandler Handler(tag: 3224, PUT) unregistering (send) +2013-08-27 01:14:03,959+0000 INFO PutFileHandler Handler(tag: 3226, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-tcztedel.error +2013-08-27 01:14:03,959+0000 INFO PutFileCommand Sending Command(tag: 448, PUT) (t) on cpipe://1 +2013-08-27 01:14:03,959+0000 INFO PutFileCommand Command(tag: 448, PUT) (t) sending data +2013-08-27 01:14:03,959+0000 INFO PutFileHandler Handler(tag: 3226, PUT) -> 448 +2013-08-27 01:14:03,959+0000 INFO PutFileHandler Handler(tag: 448, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/t/runampl-tcztedel/wrapper.error +2013-08-27 01:14:03,959+0000 INFO PutFileHandler Handler(tag: 448, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-tcztedel.error +2013-08-27 01:14:03,959+0000 INFO PutFileHandler Handler(tag: 448, PUT) Transfer done +2013-08-27 01:14:03,959+0000 INFO RequestHandler Handler(tag: 448, PUT) unregistering (send) +2013-08-27 01:14:03,959+0000 INFO PutFileHandler Handler(tag: 3226, PUT) Transfer done +2013-08-27 01:14:03,959+0000 INFO RequestHandler Handler(tag: 3226, PUT) unregistering (send) +2013-08-27 01:14:04,010+0000 INFO RuntimeStats$ProgressTicker Stage in:4 Submitted:1 Active:16 Stage out:11 Failed but can retry:1 +2013-08-27 01:14:04,115+0000 INFO GetFileHandler Handler(tag: 3227, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,115+0000 INFO GetFileHandler Handler(tag: 3227, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,115+0000 INFO GetFileHandler Handler(tag: 3227, GET) -> 449 +2013-08-27 01:14:04,115+0000 INFO GetFileHandler Handler(tag: 449, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,115+0000 INFO GetFileHandler Handler(tag: 449, GET) reader: LR-Handler(tag: 449, GET) +2013-08-27 01:14:04,115+0000 INFO GetFileHandler Handler(tag: 449, GET) sending length: 14799449, 1664306559 +2013-08-27 01:14:04,115+0000 INFO ReadBuffer RB-LR-Handler(tag: 449, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,115+0000 INFO GetFileHandler Handler(tag: 3227, GET) sending length: 14799449, 1025834938 +2013-08-27 01:14:04,115+0000 INFO ReadBuffer RB-LR-Handler(tag: 449, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,115+0000 INFO LocalIOProvider LR-Handler(tag: 449, GET) rbuf: RB-LR-Handler(tag: 449, GET) +2013-08-27 01:14:04,120+0000 INFO ProxyIOProvider Command(tag: 449, GET) suspending +2013-08-27 01:14:04,120+0000 INFO GetFileHandler Handler(tag: 449, GET) suspending +2013-08-27 01:14:04,167+0000 INFO ProxyIOProvider Command(tag: 397, GET) resuming +2013-08-27 01:14:04,167+0000 INFO GetFileHandler Handler(tag: 397, GET) resuming +2013-08-27 01:14:04,168+0000 INFO ProxyIOProvider Command(tag: 396, GET) resuming +2013-08-27 01:14:04,168+0000 INFO GetFileHandler Handler(tag: 396, GET) resuming +2013-08-27 01:14:04,168+0000 INFO GetFileHandler Handler(tag: 397, GET) unregistering (last) +2013-08-27 01:14:04,169+0000 INFO GetFileHandler Handler(tag: 3178, GET) unregistering (last) +2013-08-27 01:14:04,169+0000 INFO ReadBuffer RB-LR-Handler(tag: 397, GET) de-allocating 8 buffers +2013-08-27 01:14:04,169+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:04,169+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:04,169+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:04,169+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:04,169+0000 INFO GetFileHandler Handler(tag: 396, GET) unregistering (last) +2013-08-27 01:14:04,169+0000 INFO ReadBuffer RB-LR-Handler(tag: 396, GET) de-allocating 8 buffers +2013-08-27 01:14:04,169+0000 INFO GetFileHandler Handler(tag: 3177, GET) unregistering (last) +2013-08-27 01:14:04,171+0000 INFO ProxyIOProvider Command(tag: 400, GET) resuming +2013-08-27 01:14:04,171+0000 INFO GetFileHandler Handler(tag: 400, GET) resuming +2013-08-27 01:14:04,172+0000 INFO GetFileHandler Handler(tag: 400, GET) unregistering (last) +2013-08-27 01:14:04,172+0000 INFO ReadBuffer RB-LR-Handler(tag: 400, GET) de-allocating 8 buffers +2013-08-27 01:14:04,173+0000 INFO GetFileHandler Handler(tag: 3180, GET) unregistering (last) +2013-08-27 01:14:04,246+0000 INFO ProxyIOProvider Command(tag: 449, GET) resuming +2013-08-27 01:14:04,246+0000 INFO GetFileHandler Handler(tag: 449, GET) resuming +2013-08-27 01:14:04,249+0000 INFO GetFileHandler Handler(tag: 449, GET) unregistering (last) +2013-08-27 01:14:04,249+0000 INFO ReadBuffer RB-LR-Handler(tag: 449, GET) de-allocating 8 buffers +2013-08-27 01:14:04,249+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:04,249+0000 INFO GetFileHandler Handler(tag: 3227, GET) unregistering (last) +2013-08-27 01:14:04,267+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,267+0000 INFO Cpu 0827-1301520-000000:1 jobTerminated +2013-08-27 01:14:04,267+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=1 +2013-08-27 01:14:04,267+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=1 Cpus sleeping: 1 +2013-08-27 01:14:04,267+0000 INFO RequestHandler Handler(tag: 3228, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,267+0000 DEBUG Cpu 0827-1301520-000000:1 sleeping +2013-08-27 01:14:04,267+0000 INFO RequestHandler Handler(tag: 450, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,268+0000 INFO RequestHandler Handler(tag: 451, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,268+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,269+0000 INFO RequestHandler Handler(tag: 3229, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,269+0000 INFO RequestHandler Handler(tag: 452, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,269+0000 INFO GetFileHandler Handler(tag: 3230, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,269+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:04,269+0000 INFO GetFileHandler Handler(tag: 3230, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,269+0000 INFO GetFileHandler Handler(tag: 3230, GET) -> 453 +2013-08-27 01:14:04,269+0000 INFO GetFileHandler Handler(tag: 453, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,269+0000 INFO GetFileHandler Handler(tag: 453, GET) reader: LR-Handler(tag: 453, GET) +2013-08-27 01:14:04,269+0000 INFO GetFileHandler Handler(tag: 453, GET) sending length: 1925, 1845692530 +2013-08-27 01:14:04,269+0000 INFO GetFileHandler Handler(tag: 3230, GET) sending length: 1925, 153070795 +2013-08-27 01:14:04,269+0000 INFO ReadBuffer RB-LR-Handler(tag: 453, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,269+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,269+0000 INFO ReadBuffer RB-LR-Handler(tag: 453, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,269+0000 INFO Cpu 0827-1301520-000000:11 jobTerminated +2013-08-27 01:14:04,269+0000 INFO LocalIOProvider LR-Handler(tag: 453, GET) rbuf: RB-LR-Handler(tag: 453, GET) +2013-08-27 01:14:04,269+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=11 +2013-08-27 01:14:04,269+0000 INFO GetFileHandler Handler(tag: 453, GET) unregistering (last) +2013-08-27 01:14:04,269+0000 INFO ReadBuffer RB-LR-Handler(tag: 453, GET) de-allocating 1 buffers +2013-08-27 01:14:04,269+0000 INFO RequestHandler Handler(tag: 3231, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,269+0000 INFO GetFileHandler Handler(tag: 3230, GET) unregistering (last) +2013-08-27 01:14:04,269+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=11 Cpus sleeping: 2 +2013-08-27 01:14:04,269+0000 DEBUG Cpu 0827-1301520-000000:11 sleeping +2013-08-27 01:14:04,270+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-mcztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,270+0000 INFO RequestHandler Handler(tag: 454, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,270+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,270+0000 INFO Cpu 0827-1301520-000000:12 jobTerminated +2013-08-27 01:14:04,270+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=12 +2013-08-27 01:14:04,270+0000 INFO RequestHandler Handler(tag: 3232, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,270+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=12 Cpus sleeping: 3 +2013-08-27 01:14:04,270+0000 DEBUG Cpu 0827-1301520-000000:12 sleeping +2013-08-27 01:14:04,270+0000 INFO RequestHandler Handler(tag: 455, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,270+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,270+0000 INFO Cpu 0827-1301520-000000:15 jobTerminated +2013-08-27 01:14:04,270+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=15 +2013-08-27 01:14:04,270+0000 INFO RequestHandler Handler(tag: 3233, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,270+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=15 Cpus sleeping: 4 +2013-08-27 01:14:04,271+0000 DEBUG Cpu 0827-1301520-000000:15 sleeping +2013-08-27 01:14:04,271+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-7dztedel thread=R-42-0-1-0-2-0 host=midway replicationGroup=null +2013-08-27 01:14:04,271+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,271+0000 INFO RequestHandler Handler(tag: 456, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,271+0000 INFO Cpu 0827-1301520-000000:14 jobTerminated +2013-08-27 01:14:04,271+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:04,271+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=14 +2013-08-27 01:14:04,271+0000 DEBUG swift JOB_START jobid=runampl-7dztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0002.out, outdir/xhat_l20000_0000.0002.out, obj_outdir/obj_out_l0000_0000.0002.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0002.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/7/runampl-7dztedel host=midway +2013-08-27 01:14:04,271+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=14 Cpus sleeping: 5 +2013-08-27 01:14:04,271+0000 DEBUG Cpu 0827-1301520-000000:14 sleeping +2013-08-27 01:14:04,271+0000 INFO RequestHandler Handler(tag: 3234, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,271+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:04,272+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-1dztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,272+0000 INFO RequestHandler Handler(tag: 457, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,272+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,272+0000 INFO Cpu 0827-1301520-000000:13 jobTerminated +2013-08-27 01:14:04,272+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=13 +2013-08-27 01:14:04,272+0000 INFO RequestHandler Handler(tag: 3235, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,272+0000 INFO LateBindingScheduler jobs queued: 2 +2013-08-27 01:14:04,273+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=13 Cpus sleeping: 6 +2013-08-27 01:14:04,273+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-xcztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,273+0000 DEBUG Cpu 0827-1301520-000000:13 sleeping +2013-08-27 01:14:04,274+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,274+0000 INFO Cpu 0827-1301520-000000:0 jobTerminated +2013-08-27 01:14:04,274+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=0 +2013-08-27 01:14:04,274+0000 INFO RequestHandler Handler(tag: 458, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,274+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-ucztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,274+0000 INFO LateBindingScheduler jobs queued: 2 +2013-08-27 01:14:04,274+0000 INFO RequestHandler Handler(tag: 3236, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,274+0000 INFO RequestHandler Handler(tag: 459, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,274+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-8dztedel thread=R-42-0-1x2-15-0 host=midway replicationGroup=null +2013-08-27 01:14:04,274+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=0 Cpus sleeping: 7 +2013-08-27 01:14:04,274+0000 DEBUG Cpu 0827-1301520-000000:0 sleeping +2013-08-27 01:14:04,275+0000 DEBUG swift JOB_START jobid=runampl-8dztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0015.out, outdir/xhat_l20000_0001.0015.out, obj_outdir/obj_out_l0000_0001.0015.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0015.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/8/runampl-8dztedel host=midway +2013-08-27 01:14:04,275+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,275+0000 INFO Cpu 0827-1301520-000000:3 jobTerminated +2013-08-27 01:14:04,275+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=3 +2013-08-27 01:14:04,275+0000 INFO RequestHandler Handler(tag: 3237, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,275+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-9dztedel thread=R-42-0-1x2-19-0 host=midway replicationGroup=null +2013-08-27 01:14:04,275+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=3 Cpus sleeping: 8 +2013-08-27 01:14:04,275+0000 DEBUG Cpu 0827-1301520-000000:3 sleeping +2013-08-27 01:14:04,275+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-adztedel thread=R-42-0-1x2-6-0 host=midway replicationGroup=null +2013-08-27 01:14:04,275+0000 INFO RequestHandler Handler(tag: 460, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,275+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,275+0000 DEBUG swift JOB_START jobid=runampl-9dztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0019.out, outdir/xhat_l20000_0001.0019.out, obj_outdir/obj_out_l0000_0001.0019.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0019.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/9/runampl-9dztedel host=midway +2013-08-27 01:14:04,275+0000 INFO Cpu 0827-1301520-000000:9 jobTerminated +2013-08-27 01:14:04,275+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=9 +2013-08-27 01:14:04,275+0000 DEBUG swift JOB_START jobid=runampl-adztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0006.out, outdir/xhat_l20000_0001.0006.out, obj_outdir/obj_out_l0000_0001.0006.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0006.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/a/runampl-adztedel host=midway +2013-08-27 01:14:04,275+0000 INFO RequestHandler Handler(tag: 3238, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,275+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:04,275+0000 INFO RequestHandler Handler(tag: 461, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,276+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,276+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-0dztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,276+0000 INFO Cpu 0827-1301520-000000:8 jobTerminated +2013-08-27 01:14:04,276+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=8 +2013-08-27 01:14:04,276+0000 INFO RequestHandler Handler(tag: 3239, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,276+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=9 Cpus sleeping: 9 +2013-08-27 01:14:04,276+0000 DEBUG Cpu 0827-1301520-000000:9 sleeping +2013-08-27 01:14:04,276+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=8 Cpus sleeping: 10 +2013-08-27 01:14:04,276+0000 DEBUG Cpu 0827-1301520-000000:8 sleeping +2013-08-27 01:14:04,276+0000 INFO RequestHandler Handler(tag: 39, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,276+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-ycztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,276+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,276+0000 INFO LateBindingScheduler jobs queued: 2 +2013-08-27 01:14:04,277+0000 INFO Cpu 0827-1301520-000000:10 jobTerminated +2013-08-27 01:14:04,277+0000 INFO LateBindingScheduler jobs queued: 3 +2013-08-27 01:14:04,277+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=10 +2013-08-27 01:14:04,277+0000 INFO RequestHandler Handler(tag: 3240, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,277+0000 INFO RequestHandler Handler(tag: 462, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,278+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=10 Cpus sleeping: 11 +2013-08-27 01:14:04,278+0000 INFO Cpu 0827-1301520-000000:10 (quality: 0.5) submitting urn:1377566032121-1377566032128-1377566032129: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0002.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0002.out|outdir/xhat_l10000_00 00.0002.out|outdir/xhat_l20000_0000.0002.out|Results/ampl_res_l0000_0000.0002.out|outdir/out_l0000_0000.0002.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0002.out outdir/xhat_l20000_0000.0002.out obj_outdir/obj_out_l0000_0000.0002.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0002.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,278+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-bdztedel thread=R-42-0-1-0-7-0 host=midway replicationGroup=null +2013-08-27 01:14:04,278+0000 INFO RequestHandler Handler(tag: 463, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,278+0000 DEBUG swift JOB_START jobid=runampl-bdztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0007.out, outdir/xhat_l20000_0000.0007.out, obj_outdir/obj_out_l0000_0000.0007.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0007.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/b/runampl-bdztedel host=midway +2013-08-27 01:14:04,278+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-cdztedel thread=R-42-0-1-0-6-0 host=midway replicationGroup=null +2013-08-27 01:14:04,278+0000 INFO RequestHandler Handler(tag: 464, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,278+0000 INFO LateBindingScheduler jobs queued: 4 +2013-08-27 01:14:04,279+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-icztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,279+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-ccztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,279+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=14 Cpus sleeping: 1 +2013-08-27 01:14:04,279+0000 DEBUG Cpu 0827-1301520-000000:14 sleeping +2013-08-27 01:14:04,279+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=8 Cpus sleeping: 2 +2013-08-27 01:14:04,279+0000 DEBUG swift JOB_START jobid=runampl-cdztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0006.out, outdir/xhat_l20000_0000.0006.out, obj_outdir/obj_out_l0000_0000.0006.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0006.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/c/runampl-cdztedel host=midway +2013-08-27 01:14:04,279+0000 DEBUG Cpu 0827-1301520-000000:8 sleeping +2013-08-27 01:14:04,279+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=3 Cpus sleeping: 3 +2013-08-27 01:14:04,279+0000 DEBUG Cpu 0827-1301520-000000:3 sleeping +2013-08-27 01:14:04,279+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=11 Cpus sleeping: 4 +2013-08-27 01:14:04,279+0000 DEBUG Cpu 0827-1301520-000000:11 sleeping +2013-08-27 01:14:04,279+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=13 Cpus sleeping: 5 +2013-08-27 01:14:04,279+0000 DEBUG Cpu 0827-1301520-000000:13 sleeping +2013-08-27 01:14:04,279+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=0 Cpus sleeping: 6 +2013-08-27 01:14:04,279+0000 DEBUG Cpu 0827-1301520-000000:0 sleeping +2013-08-27 01:14:04,279+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=12 Cpus sleeping: 7 +2013-08-27 01:14:04,279+0000 DEBUG Cpu 0827-1301520-000000:12 sleeping +2013-08-27 01:14:04,279+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=9 Cpus sleeping: 8 +2013-08-27 01:14:04,279+0000 DEBUG Cpu 0827-1301520-000000:9 sleeping +2013-08-27 01:14:04,279+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=1 Cpus sleeping: 9 +2013-08-27 01:14:04,279+0000 DEBUG Cpu 0827-1301520-000000:1 sleeping +2013-08-27 01:14:04,279+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=15 Cpus sleeping: 10 +2013-08-27 01:14:04,279+0000 DEBUG Cpu 0827-1301520-000000:15 sleeping +2013-08-27 01:14:04,280+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-zcztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,280+0000 INFO LateBindingScheduler jobs queued: 3 +2013-08-27 01:14:04,280+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:04,280+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-ddztedel thread=R-42-0-1x2-4-0 host=midway replicationGroup=null +2013-08-27 01:14:04,280+0000 INFO RequestHandler Handler(tag: 40, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,280+0000 DEBUG swift JOB_START jobid=runampl-ddztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0004.out, outdir/xhat_l20000_0001.0004.out, obj_outdir/obj_out_l0000_0001.0004.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0004.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/d/runampl-ddztedel host=midway +2013-08-27 01:14:04,281+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-vcztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,281+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-edztedel thread=R-42-0-1x2-10-0 host=midway replicationGroup=null +2013-08-27 01:14:04,281+0000 DEBUG swift JOB_START jobid=runampl-edztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0010.out, outdir/xhat_l20000_0001.0010.out, obj_outdir/obj_out_l0000_0001.0010.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0010.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/e/runampl-edztedel host=midway +2013-08-27 01:14:04,281+0000 INFO RequestHandler Handler(tag: 41, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,282+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-fdztedel thread=R-42-0-1x2-14-0 host=midway replicationGroup=null +2013-08-27 01:14:04,282+0000 DEBUG swift JOB_START jobid=runampl-fdztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0014.out, outdir/xhat_l20000_0001.0014.out, obj_outdir/obj_out_l0000_0001.0014.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0014.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/f/runampl-fdztedel host=midway +2013-08-27 01:14:04,283+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-tcztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,283+0000 INFO RequestHandler Handler(tag: 42, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,283+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-gdztedel thread=R-42-0-1x2-5-0 host=midway replicationGroup=null +2013-08-27 01:14:04,283+0000 DEBUG swift JOB_START jobid=runampl-gdztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0005.out, outdir/xhat_l20000_0001.0005.out, obj_outdir/obj_out_l0000_0001.0005.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0005.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/g/runampl-gdztedel host=midway +2013-08-27 01:14:04,283+0000 INFO RequestHandler Handler(tag: 43, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,284+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-hdztedel thread=R-42-0-1-0-5-0 host=midway replicationGroup=null +2013-08-27 01:14:04,284+0000 DEBUG swift JOB_START jobid=runampl-hdztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0005.out, outdir/xhat_l20000_0000.0005.out, obj_outdir/obj_out_l0000_0000.0005.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0005.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/h/runampl-hdztedel host=midway +2013-08-27 01:14:04,284+0000 INFO RequestHandler Handler(tag: 44, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,284+0000 INFO RequestHandler Handler(tag: 46, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,285+0000 INFO RequestHandler Handler(tag: 45, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,285+0000 INFO RequestHandler Handler(tag: 47, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,286+0000 INFO RequestHandler Handler(tag: 48, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,286+0000 INFO RequestHandler Handler(tag: 49, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,329+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=14 Cpus sleeping: 1 +2013-08-27 01:14:04,330+0000 INFO Cpu 0827-1301520-000000:14 (quality: 0.5) submitting urn:1377566032136-1377566032146-1377566032147: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0015.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0015.out|outdir/xhat_l10000_00 01.0015.out|outdir/xhat_l20000_0001.0015.out|Results/ampl_res_l0000_0001.0015.out|outdir/out_l0000_0001.0015.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0015.out outdir/xhat_l20000_0001.0015.out obj_outdir/obj_out_l0000_0001.0015.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0015.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,330+0000 INFO RequestHandler Handler(tag: 465, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,330+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=8 Cpus sleeping: 1 +2013-08-27 01:14:04,330+0000 INFO Cpu 0827-1301520-000000:8 (quality: 0.5) submitting urn:1377566032140-1377566032153-1377566032154: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0006.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0006.out|outdir/xhat_l10000_000 1.0006.out|outdir/xhat_l20000_0001.0006.out|Results/ampl_res_l0000_0001.0006.out|outdir/out_l0000_0001.0006.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0006.out outdir/xhat_l20000_0001.0006.out obj_outdir/obj_out_l0000_0001.0006.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0006.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,330+0000 INFO RequestHandler Handler(tag: 466, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,330+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=3 Cpus sleeping: 1 +2013-08-27 01:14:04,330+0000 INFO Cpu 0827-1301520-000000:3 (quality: 0.5) submitting urn:1377566032141-1377566032159-1377566032160: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0019.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0019.out|outdir/xhat_l10000_000 1.0019.out|outdir/xhat_l20000_0001.0019.out|Results/ampl_res_l0000_0001.0019.out|outdir/out_l0000_0001.0019.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0019.out outdir/xhat_l20000_0001.0019.out obj_outdir/obj_out_l0000_0001.0019.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0019.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,331+0000 INFO RequestHandler Handler(tag: 467, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,331+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=11 Cpus sleeping: 1 +2013-08-27 01:14:04,331+0000 INFO Cpu 0827-1301520-000000:11 (quality: 0.5) submitting urn:1377566032157-1377566032168-1377566032169: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0006.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0006.out|outdir/xhat_l10000_00 00.0006.out|outdir/xhat_l20000_0000.0006.out|Results/ampl_res_l0000_0000.0006.out|outdir/out_l0000_0000.0006.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0006.out outdir/xhat_l20000_0000.0006.out obj_outdir/obj_out_l0000_0000.0006.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0006.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,331+0000 INFO RequestHandler Handler(tag: 468, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,331+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=13 Cpus sleeping: 1 +2013-08-27 01:14:04,331+0000 INFO Cpu 0827-1301520-000000:13 (quality: 0.5) submitting urn:1377566032162-1377566032172-1377566032173: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0004.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0004.out|outdir/xhat_l10000_00 01.0004.out|outdir/xhat_l20000_0001.0004.out|Results/ampl_res_l0000_0001.0004.out|outdir/out_l0000_0001.0004.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0004.out outdir/xhat_l20000_0001.0004.out obj_outdir/obj_out_l0000_0001.0004.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0004.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,331+0000 INFO RequestHandler Handler(tag: 469, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,331+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=0 Cpus sleeping: 1 +2013-08-27 01:14:04,331+0000 INFO Cpu 0827-1301520-000000:0 (quality: 0.5) submitting urn:1377566032165-1377566032177-1377566032178: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0010.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0010.out|outdir/xhat_l10000_000 1.0010.out|outdir/xhat_l20000_0001.0010.out|Results/ampl_res_l0000_0001.0010.out|outdir/out_l0000_0001.0010.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0010.out outdir/xhat_l20000_0001.0010.out obj_outdir/obj_out_l0000_0001.0010.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0010.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,331+0000 INFO RequestHandler Handler(tag: 470, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,332+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=12 Cpus sleeping: 1 +2013-08-27 01:14:04,332+0000 INFO Cpu 0827-1301520-000000:12 (quality: 0.5) submitting urn:1377566032164-1377566032182-1377566032183: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0007.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0007.out|outdir/xhat_l10000_00 00.0007.out|outdir/xhat_l20000_0000.0007.out|Results/ampl_res_l0000_0000.0007.out|outdir/out_l0000_0000.0007.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0007.out outdir/xhat_l20000_0000.0007.out obj_outdir/obj_out_l0000_0000.0007.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0007.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,332+0000 INFO RequestHandler Handler(tag: 471, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,332+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=9 Cpus sleeping: 1 +2013-08-27 01:14:04,332+0000 INFO Cpu 0827-1301520-000000:9 (quality: 0.5) submitting urn:1377566032175-1377566032187-1377566032188: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0014.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0014.out|outdir/xhat_l10000_000 1.0014.out|outdir/xhat_l20000_0001.0014.out|Results/ampl_res_l0000_0001.0014.out|outdir/out_l0000_0001.0014.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0014.out outdir/xhat_l20000_0001.0014.out obj_outdir/obj_out_l0000_0001.0014.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0014.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,332+0000 INFO RequestHandler Handler(tag: 472, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,332+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=1 Cpus sleeping: 1 +2013-08-27 01:14:04,332+0000 INFO Cpu 0827-1301520-000000:1 (quality: 0.5) submitting urn:1377566032180-1377566032190-1377566032191: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0005.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0005.out|outdir/xhat_l10000_000 1.0005.out|outdir/xhat_l20000_0001.0005.out|Results/ampl_res_l0000_0001.0005.out|outdir/out_l0000_0001.0005.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0005.out outdir/xhat_l20000_0001.0005.out obj_outdir/obj_out_l0000_0001.0005.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0005.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,332+0000 INFO RequestHandler Handler(tag: 473, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,332+0000 DEBUG Cpu requesting work: block=0827-1301520-000000 id=15 Cpus sleeping: 1 +2013-08-27 01:14:04,332+0000 INFO Cpu 0827-1301520-000000:15 (quality: 0.5) submitting urn:1377566032185-1377566032193-1377566032194: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0005.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0005.out|outdir/xhat_l10000_00 00.0005.out|outdir/xhat_l20000_0000.0005.out|Results/ampl_res_l0000_0000.0005.out|outdir/out_l0000_0000.0005.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0005.out outdir/xhat_l20000_0000.0005.out obj_outdir/obj_out_l0000_0000.0005.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0005.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,333+0000 INFO RequestHandler Handler(tag: 474, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,365+0000 INFO GetFileHandler Handler(tag: 3241, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,365+0000 INFO GetFileHandler Handler(tag: 3241, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,365+0000 INFO GetFileHandler Handler(tag: 3241, GET) -> 475 +2013-08-27 01:14:04,365+0000 INFO GetFileHandler Handler(tag: 475, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,365+0000 INFO GetFileHandler Handler(tag: 475, GET) reader: LR-Handler(tag: 475, GET) +2013-08-27 01:14:04,365+0000 INFO GetFileHandler Handler(tag: 475, GET) sending length: 148937, 672775134 +2013-08-27 01:14:04,365+0000 INFO GetFileHandler Handler(tag: 3241, GET) sending length: 148937, 830275683 +2013-08-27 01:14:04,365+0000 INFO ReadBuffer RB-LR-Handler(tag: 475, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:04,365+0000 INFO ReadBuffer RB-LR-Handler(tag: 475, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:04,365+0000 INFO LocalIOProvider LR-Handler(tag: 475, GET) rbuf: RB-LR-Handler(tag: 475, GET) +2013-08-27 01:14:04,365+0000 INFO GetFileHandler Handler(tag: 475, GET) unregistering (last) +2013-08-27 01:14:04,365+0000 INFO GetFileHandler Handler(tag: 3241, GET) unregistering (last) +2013-08-27 01:14:04,365+0000 INFO ReadBuffer RB-LR-Handler(tag: 475, GET) de-allocating 5 buffers +2013-08-27 01:14:04,365+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:04,365+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:04,365+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:04,371+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,371+0000 INFO RequestHandler Handler(tag: 2682, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,371+0000 INFO RequestHandler Handler(tag: 476, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,371+0000 INFO PutFileHandler Handler(tag: 2683, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/f/runampl-fcztedel/wrapper.log +2013-08-27 01:14:04,371+0000 INFO PutFileHandler Handler(tag: 2683, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-fcztedel.info +2013-08-27 01:14:04,371+0000 INFO PutFileCommand Sending Command(tag: 477, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,371+0000 INFO PutFileCommand Command(tag: 477, PUT) (t) sending data +2013-08-27 01:14:04,371+0000 INFO PutFileHandler Handler(tag: 2683, PUT) -> 477 +2013-08-27 01:14:04,371+0000 INFO PutFileHandler Handler(tag: 477, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/f/runampl-fcztedel/wrapper.log +2013-08-27 01:14:04,372+0000 INFO PutFileHandler Handler(tag: 477, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-fcztedel.info +2013-08-27 01:14:04,372+0000 INFO GetFileHandler Handler(tag: 3242, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,372+0000 INFO GetFileHandler Handler(tag: 3242, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,372+0000 INFO GetFileHandler Handler(tag: 3242, GET) -> 478 +2013-08-27 01:14:04,372+0000 INFO GetFileHandler Handler(tag: 478, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,372+0000 INFO GetFileHandler Handler(tag: 478, GET) reader: LR-Handler(tag: 478, GET) +2013-08-27 01:14:04,372+0000 INFO GetFileHandler Handler(tag: 478, GET) sending length: 148937, 2099550687 +2013-08-27 01:14:04,372+0000 INFO ReadBuffer RB-LR-Handler(tag: 478, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:04,372+0000 INFO GetFileHandler Handler(tag: 3242, GET) sending length: 148937, 1844592552 +2013-08-27 01:14:04,372+0000 INFO ReadBuffer RB-LR-Handler(tag: 478, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:04,372+0000 INFO LocalIOProvider LR-Handler(tag: 478, GET) rbuf: RB-LR-Handler(tag: 478, GET) +2013-08-27 01:14:04,374+0000 INFO GetFileHandler Handler(tag: 478, GET) unregistering (last) +2013-08-27 01:14:04,374+0000 INFO ReadBuffer RB-LR-Handler(tag: 478, GET) de-allocating 5 buffers +2013-08-27 01:14:04,374+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:04,374+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:04,374+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:04,374+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,374+0000 INFO RequestHandler Handler(tag: 2684, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,374+0000 INFO RequestHandler Handler(tag: 479, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,374+0000 INFO PutFileHandler Handler(tag: 2685, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/f/runampl-fcztedel/wrapper.error +2013-08-27 01:14:04,374+0000 INFO PutFileHandler Handler(tag: 2685, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-fcztedel.error +2013-08-27 01:14:04,374+0000 INFO PutFileCommand Sending Command(tag: 480, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,374+0000 INFO PutFileCommand Command(tag: 480, PUT) (t) sending data +2013-08-27 01:14:04,374+0000 INFO PutFileHandler Handler(tag: 2685, PUT) -> 480 +2013-08-27 01:14:04,374+0000 INFO PutFileHandler Handler(tag: 480, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/f/runampl-fcztedel/wrapper.error +2013-08-27 01:14:04,374+0000 INFO PutFileHandler Handler(tag: 480, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-fcztedel.error +2013-08-27 01:14:04,374+0000 INFO PutFileHandler Handler(tag: 477, PUT) Transfer done +2013-08-27 01:14:04,374+0000 INFO RequestHandler Handler(tag: 477, PUT) unregistering (send) +2013-08-27 01:14:04,374+0000 INFO GetFileHandler Handler(tag: 3242, GET) unregistering (last) +2013-08-27 01:14:04,374+0000 INFO PutFileHandler Handler(tag: 2683, PUT) Transfer done +2013-08-27 01:14:04,374+0000 INFO RequestHandler Handler(tag: 2683, PUT) unregistering (send) +2013-08-27 01:14:04,375+0000 INFO PutFileHandler Handler(tag: 480, PUT) Transfer done +2013-08-27 01:14:04,375+0000 INFO RequestHandler Handler(tag: 480, PUT) unregistering (send) +2013-08-27 01:14:04,375+0000 INFO PutFileHandler Handler(tag: 2685, PUT) Transfer done +2013-08-27 01:14:04,375+0000 INFO RequestHandler Handler(tag: 2685, PUT) unregistering (send) +2013-08-27 01:14:04,376+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,376+0000 INFO Cpu 0827-1301520-000001:0 jobTerminated +2013-08-27 01:14:04,376+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=0 +2013-08-27 01:14:04,376+0000 INFO RequestHandler Handler(tag: 2686, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,376+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=0 Cpus sleeping: 1 +2013-08-27 01:14:04,376+0000 DEBUG Cpu 0827-1301520-000001:0 sleeping +2013-08-27 01:14:04,376+0000 INFO RequestHandler Handler(tag: 481, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,377+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:04,378+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-fcztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,379+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-idztedel thread=R-42-0-1x2-17-0 host=midway replicationGroup=null +2013-08-27 01:14:04,379+0000 DEBUG swift JOB_START jobid=runampl-idztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0017.out, outdir/xhat_l20000_0001.0017.out, obj_outdir/obj_out_l0000_0001.0017.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0017.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/i/runampl-idztedel host=midway +2013-08-27 01:14:04,380+0000 INFO RequestHandler Handler(tag: 50, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,391+0000 INFO GetFileHandler Handler(tag: 3243, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,391+0000 INFO GetFileHandler Handler(tag: 3243, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,391+0000 INFO GetFileHandler Handler(tag: 3243, GET) -> 482 +2013-08-27 01:14:04,391+0000 INFO GetFileHandler Handler(tag: 482, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,391+0000 INFO GetFileHandler Handler(tag: 482, GET) reader: LR-Handler(tag: 482, GET) +2013-08-27 01:14:04,391+0000 INFO GetFileHandler Handler(tag: 482, GET) sending length: 148937, 1590791653 +2013-08-27 01:14:04,391+0000 INFO ReadBuffer RB-LR-Handler(tag: 482, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:04,391+0000 INFO GetFileHandler Handler(tag: 3243, GET) sending length: 148937, 263906821 +2013-08-27 01:14:04,391+0000 INFO ReadBuffer RB-LR-Handler(tag: 482, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:04,391+0000 INFO LocalIOProvider LR-Handler(tag: 482, GET) rbuf: RB-LR-Handler(tag: 482, GET) +2013-08-27 01:14:04,391+0000 INFO ThrottleManager O maxBuffers=1024, crtBuffers=1, allowedTransfers=255, active=0, suspended=0 +2013-08-27 01:14:04,391+0000 INFO GetFileHandler Handler(tag: 482, GET) unregistering (last) +2013-08-27 01:14:04,391+0000 INFO ThrottleManager mem=110.8 MB, heap=401.94 MB, maxHeap=910.25 MB +2013-08-27 01:14:04,391+0000 INFO ReadBuffer RB-LR-Handler(tag: 482, GET) de-allocating 5 buffers +2013-08-27 01:14:04,391+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:04,391+0000 INFO GetFileHandler Handler(tag: 3243, GET) unregistering (last) +2013-08-27 01:14:04,400+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,400+0000 INFO RequestHandler Handler(tag: 2687, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,400+0000 INFO RequestHandler Handler(tag: 483, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,400+0000 INFO PutFileHandler Handler(tag: 2688, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/6/runampl-6cztedel/wrapper.error +2013-08-27 01:14:04,400+0000 INFO PutFileHandler Handler(tag: 2688, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-6cztedel.error +2013-08-27 01:14:04,400+0000 INFO PutFileCommand Sending Command(tag: 484, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,400+0000 INFO PutFileCommand Command(tag: 484, PUT) (t) sending data +2013-08-27 01:14:04,400+0000 INFO PutFileHandler Handler(tag: 484, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/6/runampl-6cztedel/wrapper.error +2013-08-27 01:14:04,400+0000 INFO PutFileHandler Handler(tag: 2688, PUT) -> 484 +2013-08-27 01:14:04,400+0000 INFO PutFileHandler Handler(tag: 484, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-6cztedel.error +2013-08-27 01:14:04,400+0000 INFO ThrottleManager I maxBuffers=1024, crtBuffers=0, allowedTransfers=256, active=0, suspended=0 +2013-08-27 01:14:04,400+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,400+0000 INFO RequestHandler Handler(tag: 2689, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,400+0000 INFO PutFileHandler Handler(tag: 484, PUT) Transfer done +2013-08-27 01:14:04,400+0000 INFO RequestHandler Handler(tag: 485, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,400+0000 INFO RequestHandler Handler(tag: 484, PUT) unregistering (send) +2013-08-27 01:14:04,400+0000 INFO PutFileHandler Handler(tag: 2688, PUT) Transfer done +2013-08-27 01:14:04,400+0000 INFO PutFileHandler Handler(tag: 2690, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/6/runampl-6cztedel/wrapper.log +2013-08-27 01:14:04,400+0000 INFO RequestHandler Handler(tag: 2688, PUT) unregistering (send) +2013-08-27 01:14:04,401+0000 INFO PutFileHandler Handler(tag: 2690, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-6cztedel.info +2013-08-27 01:14:04,401+0000 INFO PutFileCommand Sending Command(tag: 486, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,401+0000 INFO PutFileCommand Command(tag: 486, PUT) (t) sending data +2013-08-27 01:14:04,401+0000 INFO PutFileHandler Handler(tag: 2690, PUT) -> 486 +2013-08-27 01:14:04,401+0000 INFO PutFileHandler Handler(tag: 486, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/6/runampl-6cztedel/wrapper.log +2013-08-27 01:14:04,401+0000 INFO PutFileHandler Handler(tag: 486, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-6cztedel.info +2013-08-27 01:14:04,402+0000 INFO PutFileHandler Handler(tag: 486, PUT) Transfer done +2013-08-27 01:14:04,402+0000 INFO RequestHandler Handler(tag: 486, PUT) unregistering (send) +2013-08-27 01:14:04,402+0000 INFO PutFileHandler Handler(tag: 2690, PUT) Transfer done +2013-08-27 01:14:04,402+0000 INFO RequestHandler Handler(tag: 2690, PUT) unregistering (send) +2013-08-27 01:14:04,405+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,405+0000 INFO RequestHandler Handler(tag: 2691, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,405+0000 INFO RequestHandler Handler(tag: 487, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,405+0000 INFO PutFileHandler Handler(tag: 2692, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/h/runampl-hcztedel/wrapper.log +2013-08-27 01:14:04,405+0000 INFO PutFileHandler Handler(tag: 2692, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-hcztedel.info +2013-08-27 01:14:04,405+0000 INFO PutFileCommand Sending Command(tag: 488, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,405+0000 INFO PutFileCommand Command(tag: 488, PUT) (t) sending data +2013-08-27 01:14:04,405+0000 INFO PutFileHandler Handler(tag: 2692, PUT) -> 488 +2013-08-27 01:14:04,405+0000 INFO PutFileHandler Handler(tag: 488, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/h/runampl-hcztedel/wrapper.log +2013-08-27 01:14:04,405+0000 INFO PutFileHandler Handler(tag: 488, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-hcztedel.info +2013-08-27 01:14:04,406+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,406+0000 INFO RequestHandler Handler(tag: 2693, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,406+0000 INFO RequestHandler Handler(tag: 489, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,406+0000 INFO PutFileHandler Handler(tag: 2694, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/h/runampl-hcztedel/wrapper.error +2013-08-27 01:14:04,406+0000 INFO PutFileHandler Handler(tag: 2694, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-hcztedel.error +2013-08-27 01:14:04,406+0000 INFO PutFileCommand Sending Command(tag: 490, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,406+0000 INFO PutFileCommand Command(tag: 490, PUT) (t) sending data +2013-08-27 01:14:04,406+0000 INFO PutFileHandler Handler(tag: 2694, PUT) -> 490 +2013-08-27 01:14:04,406+0000 INFO PutFileHandler Handler(tag: 490, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/h/runampl-hcztedel/wrapper.error +2013-08-27 01:14:04,406+0000 INFO PutFileHandler Handler(tag: 490, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-hcztedel.error +2013-08-27 01:14:04,406+0000 INFO PutFileHandler Handler(tag: 488, PUT) Transfer done +2013-08-27 01:14:04,406+0000 INFO RequestHandler Handler(tag: 488, PUT) unregistering (send) +2013-08-27 01:14:04,406+0000 INFO PutFileHandler Handler(tag: 2692, PUT) Transfer done +2013-08-27 01:14:04,406+0000 INFO RequestHandler Handler(tag: 2692, PUT) unregistering (send) +2013-08-27 01:14:04,407+0000 INFO PutFileHandler Handler(tag: 490, PUT) Transfer done +2013-08-27 01:14:04,407+0000 INFO RequestHandler Handler(tag: 490, PUT) unregistering (send) +2013-08-27 01:14:04,407+0000 INFO PutFileHandler Handler(tag: 2694, PUT) Transfer done +2013-08-27 01:14:04,407+0000 INFO RequestHandler Handler(tag: 2694, PUT) unregistering (send) +2013-08-27 01:14:04,410+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,410+0000 INFO Cpu 0827-1301520-000001:5 jobTerminated +2013-08-27 01:14:04,410+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=5 +2013-08-27 01:14:04,410+0000 INFO RequestHandler Handler(tag: 2695, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,410+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=5 Cpus sleeping: 2 +2013-08-27 01:14:04,410+0000 INFO Cpu 0827-1301520-000001:5 (quality: 0.5) submitting urn:1377566032199-1377566032201-1377566032202: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0017.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0017.out|outdir/xhat_l10000_000 1.0017.out|outdir/xhat_l20000_0001.0017.out|Results/ampl_res_l0000_0001.0017.out|outdir/out_l0000_0001.0017.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0017.out outdir/xhat_l20000_0001.0017.out obj_outdir/obj_out_l0000_0001.0017.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0017.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,410+0000 INFO RequestHandler Handler(tag: 491, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,410+0000 INFO RequestHandler Handler(tag: 492, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,410+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=0 Cpus sleeping: 1 +2013-08-27 01:14:04,410+0000 DEBUG Cpu 0827-1301520-000001:0 sleeping +2013-08-27 01:14:04,410+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,410+0000 INFO Cpu 0827-1301520-000001:1 jobTerminated +2013-08-27 01:14:04,410+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=1 +2013-08-27 01:14:04,410+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=1 Cpus sleeping: 2 +2013-08-27 01:14:04,410+0000 INFO RequestHandler Handler(tag: 2696, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,410+0000 DEBUG Cpu 0827-1301520-000001:1 sleeping +2013-08-27 01:14:04,411+0000 INFO RequestHandler Handler(tag: 493, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,411+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:04,411+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-6cztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,411+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:04,412+0000 INFO RequestHandler Handler(tag: 494, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,412+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-hcztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,412+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,412+0000 INFO RequestHandler Handler(tag: 2697, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,412+0000 INFO RequestHandler Handler(tag: 495, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,412+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-jdztedel thread=R-42-0-1-0-9-0 host=midway replicationGroup=null +2013-08-27 01:14:04,412+0000 INFO GetFileHandler Handler(tag: 2698, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,412+0000 INFO GetFileHandler Handler(tag: 2698, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,412+0000 INFO GetFileHandler Handler(tag: 2698, GET) -> 496 +2013-08-27 01:14:04,412+0000 INFO GetFileHandler Handler(tag: 496, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,412+0000 DEBUG swift JOB_START jobid=runampl-jdztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0009.out, outdir/xhat_l20000_0000.0009.out, obj_outdir/obj_out_l0000_0000.0009.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0009.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/j/runampl-jdztedel host=midway +2013-08-27 01:14:04,413+0000 INFO GetFileHandler Handler(tag: 496, GET) reader: LR-Handler(tag: 496, GET) +2013-08-27 01:14:04,413+0000 INFO GetFileHandler Handler(tag: 496, GET) sending length: 1925, 629630208 +2013-08-27 01:14:04,413+0000 INFO ReadBuffer RB-LR-Handler(tag: 496, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,413+0000 INFO GetFileHandler Handler(tag: 2698, GET) sending length: 1925, 1542977087 +2013-08-27 01:14:04,413+0000 INFO ReadBuffer RB-LR-Handler(tag: 496, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,413+0000 INFO LocalIOProvider LR-Handler(tag: 496, GET) rbuf: RB-LR-Handler(tag: 496, GET) +2013-08-27 01:14:04,413+0000 INFO GetFileHandler Handler(tag: 496, GET) unregistering (last) +2013-08-27 01:14:04,413+0000 INFO ReadBuffer RB-LR-Handler(tag: 496, GET) de-allocating 1 buffers +2013-08-27 01:14:04,413+0000 INFO GetFileHandler Handler(tag: 2698, GET) unregistering (last) +2013-08-27 01:14:04,413+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-kdztedel thread=R-42-0-1x2-3-0 host=midway replicationGroup=null +2013-08-27 01:14:04,413+0000 DEBUG swift JOB_START jobid=runampl-kdztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0003.out, outdir/xhat_l20000_0001.0003.out, obj_outdir/obj_out_l0000_0001.0003.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0003.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/k/runampl-kdztedel host=midway +2013-08-27 01:14:04,414+0000 INFO GetFileHandler Handler(tag: 2699, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,414+0000 INFO GetFileHandler Handler(tag: 2699, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,414+0000 INFO GetFileHandler Handler(tag: 2699, GET) -> 497 +2013-08-27 01:14:04,414+0000 INFO GetFileHandler Handler(tag: 497, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,414+0000 INFO GetFileHandler Handler(tag: 497, GET) reader: LR-Handler(tag: 497, GET) +2013-08-27 01:14:04,414+0000 INFO GetFileHandler Handler(tag: 497, GET) sending length: 14799449, 645444545 +2013-08-27 01:14:04,414+0000 INFO ReadBuffer RB-LR-Handler(tag: 497, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,414+0000 INFO GetFileHandler Handler(tag: 2699, GET) sending length: 14799449, 1046566818 +2013-08-27 01:14:04,414+0000 INFO ReadBuffer RB-LR-Handler(tag: 497, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,414+0000 INFO LocalIOProvider LR-Handler(tag: 497, GET) rbuf: RB-LR-Handler(tag: 497, GET) +2013-08-27 01:14:04,414+0000 INFO RequestHandler Handler(tag: 51, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,415+0000 INFO RequestHandler Handler(tag: 52, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,422+0000 INFO GetFileHandler Handler(tag: 497, GET) unregistering (last) +2013-08-27 01:14:04,422+0000 INFO ReadBuffer RB-LR-Handler(tag: 497, GET) de-allocating 8 buffers +2013-08-27 01:14:04,422+0000 INFO GetFileHandler Handler(tag: 2699, GET) unregistering (last) +2013-08-27 01:14:04,453+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,453+0000 INFO RequestHandler Handler(tag: 2700, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,454+0000 INFO RequestHandler Handler(tag: 498, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,454+0000 INFO PutFileHandler Handler(tag: 2701, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/j/runampl-jcztedel/wrapper.error +2013-08-27 01:14:04,454+0000 INFO PutFileHandler Handler(tag: 2701, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-jcztedel.error +2013-08-27 01:14:04,454+0000 INFO PutFileCommand Sending Command(tag: 499, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,454+0000 INFO PutFileCommand Command(tag: 499, PUT) (t) sending data +2013-08-27 01:14:04,454+0000 INFO PutFileHandler Handler(tag: 499, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/j/runampl-jcztedel/wrapper.error +2013-08-27 01:14:04,454+0000 INFO PutFileHandler Handler(tag: 2701, PUT) -> 499 +2013-08-27 01:14:04,454+0000 INFO PutFileHandler Handler(tag: 499, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-jcztedel.error +2013-08-27 01:14:04,454+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,454+0000 INFO RequestHandler Handler(tag: 2702, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,454+0000 INFO RequestHandler Handler(tag: 500, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,454+0000 INFO PutFileHandler Handler(tag: 2703, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/j/runampl-jcztedel/wrapper.log +2013-08-27 01:14:04,454+0000 INFO PutFileHandler Handler(tag: 2703, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-jcztedel.info +2013-08-27 01:14:04,454+0000 INFO PutFileCommand Sending Command(tag: 501, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,454+0000 INFO PutFileCommand Command(tag: 501, PUT) (t) sending data +2013-08-27 01:14:04,454+0000 INFO PutFileHandler Handler(tag: 501, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/j/runampl-jcztedel/wrapper.log +2013-08-27 01:14:04,454+0000 INFO PutFileHandler Handler(tag: 2703, PUT) -> 501 +2013-08-27 01:14:04,454+0000 INFO PutFileHandler Handler(tag: 501, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-jcztedel.info +2013-08-27 01:14:04,454+0000 INFO PutFileHandler Handler(tag: 499, PUT) Transfer done +2013-08-27 01:14:04,454+0000 INFO RequestHandler Handler(tag: 499, PUT) unregistering (send) +2013-08-27 01:14:04,454+0000 INFO PutFileHandler Handler(tag: 2701, PUT) Transfer done +2013-08-27 01:14:04,454+0000 INFO RequestHandler Handler(tag: 2701, PUT) unregistering (send) +2013-08-27 01:14:04,455+0000 INFO PutFileHandler Handler(tag: 501, PUT) Transfer done +2013-08-27 01:14:04,455+0000 INFO RequestHandler Handler(tag: 501, PUT) unregistering (send) +2013-08-27 01:14:04,456+0000 INFO PutFileHandler Handler(tag: 2703, PUT) Transfer done +2013-08-27 01:14:04,456+0000 INFO RequestHandler Handler(tag: 2703, PUT) unregistering (send) +2013-08-27 01:14:04,460+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,460+0000 INFO RequestHandler Handler(tag: 2704, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,461+0000 INFO RequestHandler Handler(tag: 502, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,461+0000 INFO PutFileHandler Handler(tag: 2705, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/8/runampl-8cztedel/wrapper.log +2013-08-27 01:14:04,461+0000 INFO PutFileHandler Handler(tag: 2705, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-8cztedel.info +2013-08-27 01:14:04,461+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=0 Cpus sleeping: 1 +2013-08-27 01:14:04,461+0000 INFO PutFileCommand Sending Command(tag: 503, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,461+0000 INFO PutFileCommand Command(tag: 503, PUT) (t) sending data +2013-08-27 01:14:04,461+0000 INFO PutFileHandler Handler(tag: 2705, PUT) -> 503 +2013-08-27 01:14:04,461+0000 INFO PutFileHandler Handler(tag: 503, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/8/runampl-8cztedel/wrapper.log +2013-08-27 01:14:04,461+0000 INFO PutFileHandler Handler(tag: 503, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-8cztedel.info +2013-08-27 01:14:04,461+0000 INFO Cpu 0827-1301520-000001:0 (quality: 0.5) submitting urn:1377566032210-1377566032213-1377566032214: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0009.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0009.out|outdir/xhat_l10000_000 0.0009.out|outdir/xhat_l20000_0000.0009.out|Results/ampl_res_l0000_0000.0009.out|outdir/out_l0000_0000.0009.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0009.out outdir/xhat_l20000_0000.0009.out obj_outdir/obj_out_l0000_0000.0009.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0009.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,461+0000 INFO RequestHandler Handler(tag: 504, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,461+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=1 Cpus sleeping: 1 +2013-08-27 01:14:04,461+0000 INFO Cpu 0827-1301520-000001:1 (quality: 0.5) submitting urn:1377566032215-1377566032217-1377566032218: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0003.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0003.out|outdir/xhat_l10000_000 1.0003.out|outdir/xhat_l20000_0001.0003.out|Results/ampl_res_l0000_0001.0003.out|outdir/out_l0000_0001.0003.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0003.out outdir/xhat_l20000_0001.0003.out obj_outdir/obj_out_l0000_0001.0003.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0003.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,461+0000 INFO GetFileHandler Handler(tag: 3244, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,461+0000 INFO RequestHandler Handler(tag: 505, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,461+0000 INFO GetFileHandler Handler(tag: 3244, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,461+0000 INFO GetFileHandler Handler(tag: 3244, GET) -> 506 +2013-08-27 01:14:04,461+0000 INFO GetFileHandler Handler(tag: 506, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,461+0000 INFO GetFileHandler Handler(tag: 506, GET) reader: LR-Handler(tag: 506, GET) +2013-08-27 01:14:04,461+0000 INFO GetFileHandler Handler(tag: 506, GET) sending length: 148937, 636469761 +2013-08-27 01:14:04,461+0000 INFO ReadBuffer RB-LR-Handler(tag: 506, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:04,461+0000 INFO GetFileHandler Handler(tag: 3244, GET) sending length: 148937, 531227420 +2013-08-27 01:14:04,461+0000 INFO ReadBuffer RB-LR-Handler(tag: 506, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:04,461+0000 INFO LocalIOProvider LR-Handler(tag: 506, GET) rbuf: RB-LR-Handler(tag: 506, GET) +2013-08-27 01:14:04,461+0000 INFO GetFileHandler Handler(tag: 3245, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,462+0000 INFO GetFileHandler Handler(tag: 3245, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,462+0000 INFO GetFileHandler Handler(tag: 3245, GET) -> 507 +2013-08-27 01:14:04,462+0000 INFO GetFileHandler Handler(tag: 507, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,462+0000 INFO GetFileHandler Handler(tag: 507, GET) reader: LR-Handler(tag: 507, GET) +2013-08-27 01:14:04,462+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,462+0000 INFO GetFileHandler Handler(tag: 506, GET) unregistering (last) +2013-08-27 01:14:04,462+0000 INFO RequestHandler Handler(tag: 2706, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,462+0000 INFO GetFileHandler Handler(tag: 507, GET) sending length: 14799449, 567695038 +2013-08-27 01:14:04,462+0000 INFO PutFileHandler Handler(tag: 503, PUT) Transfer done +2013-08-27 01:14:04,462+0000 INFO ReadBuffer RB-LR-Handler(tag: 506, GET) de-allocating 5 buffers +2013-08-27 01:14:04,462+0000 INFO RequestHandler Handler(tag: 503, PUT) unregistering (send) +2013-08-27 01:14:04,462+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:04,462+0000 INFO ReadBuffer RB-LR-Handler(tag: 507, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,462+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:04,462+0000 INFO GetFileHandler Handler(tag: 3244, GET) unregistering (last) +2013-08-27 01:14:04,462+0000 INFO NIOChannelReadBuffer Transfer done. De-allocating one unused buffer +2013-08-27 01:14:04,462+0000 INFO GetFileHandler Handler(tag: 3245, GET) sending length: 14799449, 2128143692 +2013-08-27 01:14:04,462+0000 INFO ReadBuffer RB-LR-Handler(tag: 507, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,462+0000 INFO PutFileHandler Handler(tag: 2705, PUT) Transfer done +2013-08-27 01:14:04,462+0000 INFO PutFileHandler Handler(tag: 2707, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/o/runampl-ocztedel/wrapper.log +2013-08-27 01:14:04,462+0000 INFO RequestHandler Handler(tag: 2705, PUT) unregistering (send) +2013-08-27 01:14:04,462+0000 INFO LocalIOProvider LR-Handler(tag: 507, GET) rbuf: RB-LR-Handler(tag: 507, GET) +2013-08-27 01:14:04,462+0000 INFO PutFileHandler Handler(tag: 2707, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ocztedel.info +2013-08-27 01:14:04,462+0000 INFO PutFileCommand Sending Command(tag: 509, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,462+0000 INFO PutFileCommand Command(tag: 509, PUT) (t) sending data +2013-08-27 01:14:04,462+0000 INFO RequestHandler Handler(tag: 508, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,462+0000 INFO PutFileHandler Handler(tag: 2707, PUT) -> 509 +2013-08-27 01:14:04,462+0000 INFO PutFileHandler Handler(tag: 509, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/o/runampl-ocztedel/wrapper.log +2013-08-27 01:14:04,462+0000 INFO PutFileHandler Handler(tag: 509, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ocztedel.info +2013-08-27 01:14:04,462+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,462+0000 INFO RequestHandler Handler(tag: 2708, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,462+0000 INFO RequestHandler Handler(tag: 510, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,462+0000 INFO PutFileHandler Handler(tag: 2709, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/8/runampl-8cztedel/wrapper.error +2013-08-27 01:14:04,462+0000 INFO PutFileHandler Handler(tag: 2709, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-8cztedel.error +2013-08-27 01:14:04,462+0000 INFO PutFileCommand Sending Command(tag: 511, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,462+0000 INFO PutFileCommand Command(tag: 511, PUT) (t) sending data +2013-08-27 01:14:04,462+0000 INFO PutFileHandler Handler(tag: 2709, PUT) -> 511 +2013-08-27 01:14:04,462+0000 INFO PutFileHandler Handler(tag: 511, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/8/runampl-8cztedel/wrapper.error +2013-08-27 01:14:04,462+0000 INFO PutFileHandler Handler(tag: 511, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-8cztedel.error +2013-08-27 01:14:04,463+0000 INFO RequestHandler Handler(tag: 512, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,463+0000 INFO PutFileHandler Handler(tag: 511, PUT) Transfer done +2013-08-27 01:14:04,463+0000 INFO RequestHandler Handler(tag: 511, PUT) unregistering (send) +2013-08-27 01:14:04,463+0000 INFO PutFileHandler Handler(tag: 2709, PUT) Transfer done +2013-08-27 01:14:04,463+0000 INFO RequestHandler Handler(tag: 2709, PUT) unregistering (send) +2013-08-27 01:14:04,463+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,463+0000 INFO RequestHandler Handler(tag: 3246, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,463+0000 INFO RequestHandler Handler(tag: 513, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,463+0000 INFO GetFileHandler Handler(tag: 3247, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,463+0000 INFO GetFileHandler Handler(tag: 3247, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,463+0000 INFO GetFileHandler Handler(tag: 3247, GET) -> 514 +2013-08-27 01:14:04,463+0000 INFO GetFileHandler Handler(tag: 514, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,463+0000 INFO GetFileHandler Handler(tag: 514, GET) reader: LR-Handler(tag: 514, GET) +2013-08-27 01:14:04,463+0000 INFO GetFileHandler Handler(tag: 514, GET) sending length: 1925, 514149607 +2013-08-27 01:14:04,463+0000 INFO ReadBuffer RB-LR-Handler(tag: 514, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,463+0000 INFO ReadBuffer RB-LR-Handler(tag: 514, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,463+0000 INFO LocalIOProvider LR-Handler(tag: 514, GET) rbuf: RB-LR-Handler(tag: 514, GET) +2013-08-27 01:14:04,463+0000 INFO GetFileHandler Handler(tag: 514, GET) unregistering (last) +2013-08-27 01:14:04,463+0000 INFO ReadBuffer RB-LR-Handler(tag: 514, GET) de-allocating 1 buffers +2013-08-27 01:14:04,463+0000 INFO GetFileHandler Handler(tag: 3247, GET) sending length: 1925, 170635149 +2013-08-27 01:14:04,463+0000 INFO GetFileHandler Handler(tag: 3247, GET) unregistering (last) +2013-08-27 01:14:04,464+0000 INFO RequestHandler Handler(tag: 515, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,464+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,464+0000 INFO RequestHandler Handler(tag: 3248, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,464+0000 INFO RequestHandler Handler(tag: 516, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,464+0000 INFO GetFileHandler Handler(tag: 3249, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,464+0000 INFO GetFileHandler Handler(tag: 3249, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,464+0000 INFO GetFileHandler Handler(tag: 3249, GET) -> 517 +2013-08-27 01:14:04,464+0000 INFO GetFileHandler Handler(tag: 517, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,464+0000 INFO GetFileHandler Handler(tag: 517, GET) reader: LR-Handler(tag: 517, GET) +2013-08-27 01:14:04,464+0000 INFO GetFileHandler Handler(tag: 517, GET) sending length: 1925, 1584719455 +2013-08-27 01:14:04,464+0000 INFO ReadBuffer RB-LR-Handler(tag: 517, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,464+0000 INFO ReadBuffer RB-LR-Handler(tag: 517, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,464+0000 INFO LocalIOProvider LR-Handler(tag: 517, GET) rbuf: RB-LR-Handler(tag: 517, GET) +2013-08-27 01:14:04,464+0000 INFO GetFileHandler Handler(tag: 517, GET) unregistering (last) +2013-08-27 01:14:04,464+0000 INFO ReadBuffer RB-LR-Handler(tag: 517, GET) de-allocating 1 buffers +2013-08-27 01:14:04,464+0000 INFO GetFileHandler Handler(tag: 3249, GET) sending length: 1925, 2014648618 +2013-08-27 01:14:04,464+0000 INFO GetFileHandler Handler(tag: 3249, GET) unregistering (last) +2013-08-27 01:14:04,465+0000 INFO RequestHandler Handler(tag: 518, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,465+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,465+0000 INFO RequestHandler Handler(tag: 3250, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,465+0000 INFO RequestHandler Handler(tag: 519, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,465+0000 INFO GetFileHandler Handler(tag: 3251, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,465+0000 INFO GetFileHandler Handler(tag: 3251, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,465+0000 INFO GetFileHandler Handler(tag: 3251, GET) -> 520 +2013-08-27 01:14:04,465+0000 INFO GetFileHandler Handler(tag: 520, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,465+0000 INFO GetFileHandler Handler(tag: 520, GET) reader: LR-Handler(tag: 520, GET) +2013-08-27 01:14:04,465+0000 INFO GetFileHandler Handler(tag: 520, GET) sending length: 1925, 244101068 +2013-08-27 01:14:04,465+0000 INFO ReadBuffer RB-LR-Handler(tag: 520, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,465+0000 INFO ReadBuffer RB-LR-Handler(tag: 520, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,465+0000 INFO LocalIOProvider LR-Handler(tag: 520, GET) rbuf: RB-LR-Handler(tag: 520, GET) +2013-08-27 01:14:04,465+0000 INFO GetFileHandler Handler(tag: 520, GET) unregistering (last) +2013-08-27 01:14:04,465+0000 INFO ReadBuffer RB-LR-Handler(tag: 520, GET) de-allocating 1 buffers +2013-08-27 01:14:04,465+0000 INFO GetFileHandler Handler(tag: 3251, GET) sending length: 1925, 1219995374 +2013-08-27 01:14:04,465+0000 INFO GetFileHandler Handler(tag: 3251, GET) unregistering (last) +2013-08-27 01:14:04,466+0000 INFO RequestHandler Handler(tag: 521, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,466+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,466+0000 INFO RequestHandler Handler(tag: 3252, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,466+0000 INFO RequestHandler Handler(tag: 522, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,466+0000 INFO GetFileHandler Handler(tag: 3253, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,466+0000 INFO GetFileHandler Handler(tag: 3253, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,466+0000 INFO GetFileHandler Handler(tag: 3253, GET) -> 523 +2013-08-27 01:14:04,466+0000 INFO GetFileHandler Handler(tag: 523, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,466+0000 INFO GetFileHandler Handler(tag: 523, GET) reader: LR-Handler(tag: 523, GET) +2013-08-27 01:14:04,466+0000 INFO GetFileHandler Handler(tag: 523, GET) sending length: 1925, 1390968243 +2013-08-27 01:14:04,466+0000 INFO ReadBuffer RB-LR-Handler(tag: 523, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,466+0000 INFO ReadBuffer RB-LR-Handler(tag: 523, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,466+0000 INFO LocalIOProvider LR-Handler(tag: 523, GET) rbuf: RB-LR-Handler(tag: 523, GET) +2013-08-27 01:14:04,466+0000 INFO GetFileHandler Handler(tag: 523, GET) unregistering (last) +2013-08-27 01:14:04,466+0000 INFO ReadBuffer RB-LR-Handler(tag: 523, GET) de-allocating 1 buffers +2013-08-27 01:14:04,466+0000 INFO GetFileHandler Handler(tag: 3253, GET) sending length: 1925, 132298265 +2013-08-27 01:14:04,466+0000 INFO GetFileHandler Handler(tag: 3253, GET) unregistering (last) +2013-08-27 01:14:04,467+0000 INFO RequestHandler Handler(tag: 524, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,467+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,467+0000 INFO RequestHandler Handler(tag: 3254, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,467+0000 INFO RequestHandler Handler(tag: 525, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,467+0000 INFO GetFileHandler Handler(tag: 3255, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,467+0000 INFO GetFileHandler Handler(tag: 3255, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,467+0000 INFO GetFileHandler Handler(tag: 3255, GET) -> 526 +2013-08-27 01:14:04,467+0000 INFO GetFileHandler Handler(tag: 526, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,467+0000 INFO PutFileHandler Handler(tag: 509, PUT) Transfer done +2013-08-27 01:14:04,467+0000 INFO RequestHandler Handler(tag: 509, PUT) unregistering (send) +2013-08-27 01:14:04,467+0000 INFO GetFileHandler Handler(tag: 526, GET) reader: LR-Handler(tag: 526, GET) +2013-08-27 01:14:04,467+0000 INFO GetFileHandler Handler(tag: 526, GET) sending length: 1925, 324632714 +2013-08-27 01:14:04,467+0000 INFO ReadBuffer RB-LR-Handler(tag: 526, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,467+0000 INFO PutFileHandler Handler(tag: 2707, PUT) Transfer done +2013-08-27 01:14:04,467+0000 INFO ReadBuffer RB-LR-Handler(tag: 526, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,467+0000 INFO LocalIOProvider LR-Handler(tag: 526, GET) rbuf: RB-LR-Handler(tag: 526, GET) +2013-08-27 01:14:04,467+0000 INFO RequestHandler Handler(tag: 2707, PUT) unregistering (send) +2013-08-27 01:14:04,467+0000 INFO GetFileHandler Handler(tag: 526, GET) unregistering (last) +2013-08-27 01:14:04,467+0000 INFO ReadBuffer RB-LR-Handler(tag: 526, GET) de-allocating 1 buffers +2013-08-27 01:14:04,467+0000 INFO GetFileHandler Handler(tag: 3255, GET) sending length: 1925, 340318343 +2013-08-27 01:14:04,467+0000 INFO GetFileHandler Handler(tag: 3255, GET) unregistering (last) +2013-08-27 01:14:04,468+0000 INFO RequestHandler Handler(tag: 527, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,468+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,468+0000 INFO RequestHandler Handler(tag: 2710, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,468+0000 INFO RequestHandler Handler(tag: 528, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,468+0000 INFO PutFileHandler Handler(tag: 2711, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/o/runampl-ocztedel/wrapper.error +2013-08-27 01:14:04,468+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,468+0000 INFO RequestHandler Handler(tag: 3256, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,468+0000 INFO PutFileHandler Handler(tag: 2711, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ocztedel.error +2013-08-27 01:14:04,468+0000 INFO RequestHandler Handler(tag: 529, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,468+0000 INFO PutFileCommand Sending Command(tag: 530, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,468+0000 INFO PutFileCommand Command(tag: 530, PUT) (t) sending data +2013-08-27 01:14:04,468+0000 INFO PutFileHandler Handler(tag: 2711, PUT) -> 530 +2013-08-27 01:14:04,468+0000 INFO PutFileHandler Handler(tag: 530, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/o/runampl-ocztedel/wrapper.error +2013-08-27 01:14:04,468+0000 INFO PutFileHandler Handler(tag: 530, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ocztedel.error +2013-08-27 01:14:04,468+0000 INFO GetFileHandler Handler(tag: 3257, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,468+0000 INFO GetFileHandler Handler(tag: 3257, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,468+0000 INFO GetFileHandler Handler(tag: 3257, GET) -> 531 +2013-08-27 01:14:04,468+0000 INFO GetFileHandler Handler(tag: 531, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,468+0000 INFO GetFileHandler Handler(tag: 531, GET) reader: LR-Handler(tag: 531, GET) +2013-08-27 01:14:04,468+0000 INFO GetFileHandler Handler(tag: 531, GET) sending length: 1925, 1960480050 +2013-08-27 01:14:04,468+0000 INFO ReadBuffer RB-LR-Handler(tag: 531, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,468+0000 INFO ReadBuffer RB-LR-Handler(tag: 531, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,468+0000 INFO LocalIOProvider LR-Handler(tag: 531, GET) rbuf: RB-LR-Handler(tag: 531, GET) +2013-08-27 01:14:04,468+0000 INFO GetFileHandler Handler(tag: 531, GET) unregistering (last) +2013-08-27 01:14:04,468+0000 INFO ReadBuffer RB-LR-Handler(tag: 531, GET) de-allocating 1 buffers +2013-08-27 01:14:04,468+0000 INFO GetFileHandler Handler(tag: 3257, GET) sending length: 1925, 1797840777 +2013-08-27 01:14:04,468+0000 INFO PutFileHandler Handler(tag: 530, PUT) Transfer done +2013-08-27 01:14:04,468+0000 INFO RequestHandler Handler(tag: 532, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,468+0000 INFO RequestHandler Handler(tag: 530, PUT) unregistering (send) +2013-08-27 01:14:04,469+0000 INFO GetFileHandler Handler(tag: 3257, GET) unregistering (last) +2013-08-27 01:14:04,469+0000 INFO PutFileHandler Handler(tag: 2711, PUT) Transfer done +2013-08-27 01:14:04,469+0000 INFO RequestHandler Handler(tag: 2711, PUT) unregistering (send) +2013-08-27 01:14:04,469+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,469+0000 INFO RequestHandler Handler(tag: 3258, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,469+0000 INFO RequestHandler Handler(tag: 533, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,469+0000 INFO GetFileHandler Handler(tag: 3259, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,469+0000 INFO GetFileHandler Handler(tag: 3259, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,469+0000 INFO GetFileHandler Handler(tag: 3259, GET) -> 534 +2013-08-27 01:14:04,469+0000 INFO GetFileHandler Handler(tag: 534, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,469+0000 INFO GetFileHandler Handler(tag: 534, GET) reader: LR-Handler(tag: 534, GET) +2013-08-27 01:14:04,469+0000 INFO GetFileHandler Handler(tag: 534, GET) sending length: 1925, 515764120 +2013-08-27 01:14:04,469+0000 INFO ReadBuffer RB-LR-Handler(tag: 534, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,469+0000 INFO ReadBuffer RB-LR-Handler(tag: 534, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,469+0000 INFO LocalIOProvider LR-Handler(tag: 534, GET) rbuf: RB-LR-Handler(tag: 534, GET) +2013-08-27 01:14:04,469+0000 INFO GetFileHandler Handler(tag: 534, GET) unregistering (last) +2013-08-27 01:14:04,469+0000 INFO ReadBuffer RB-LR-Handler(tag: 534, GET) de-allocating 1 buffers +2013-08-27 01:14:04,469+0000 INFO GetFileHandler Handler(tag: 3259, GET) sending length: 1925, 1177694143 +2013-08-27 01:14:04,469+0000 INFO GetFileHandler Handler(tag: 3259, GET) unregistering (last) +2013-08-27 01:14:04,469+0000 INFO RequestHandler Handler(tag: 535, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,470+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,470+0000 INFO RequestHandler Handler(tag: 3260, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,470+0000 INFO RequestHandler Handler(tag: 536, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,470+0000 INFO GetFileHandler Handler(tag: 3261, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,470+0000 INFO GetFileHandler Handler(tag: 3261, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,470+0000 INFO GetFileHandler Handler(tag: 3261, GET) -> 537 +2013-08-27 01:14:04,470+0000 INFO GetFileHandler Handler(tag: 537, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,470+0000 INFO GetFileHandler Handler(tag: 537, GET) reader: LR-Handler(tag: 537, GET) +2013-08-27 01:14:04,470+0000 INFO GetFileHandler Handler(tag: 537, GET) sending length: 1925, 791817025 +2013-08-27 01:14:04,470+0000 INFO ReadBuffer RB-LR-Handler(tag: 537, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,470+0000 INFO ReadBuffer RB-LR-Handler(tag: 537, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,470+0000 INFO LocalIOProvider LR-Handler(tag: 537, GET) rbuf: RB-LR-Handler(tag: 537, GET) +2013-08-27 01:14:04,470+0000 INFO GetFileHandler Handler(tag: 537, GET) unregistering (last) +2013-08-27 01:14:04,470+0000 INFO ReadBuffer RB-LR-Handler(tag: 537, GET) de-allocating 1 buffers +2013-08-27 01:14:04,470+0000 INFO GetFileHandler Handler(tag: 3261, GET) sending length: 1925, 177386805 +2013-08-27 01:14:04,470+0000 INFO GetFileHandler Handler(tag: 3261, GET) unregistering (last) +2013-08-27 01:14:04,470+0000 INFO RequestHandler Handler(tag: 538, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,470+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,471+0000 INFO RequestHandler Handler(tag: 3262, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,471+0000 INFO RequestHandler Handler(tag: 539, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,471+0000 INFO GetFileHandler Handler(tag: 3263, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,471+0000 INFO GetFileHandler Handler(tag: 3263, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,471+0000 INFO GetFileHandler Handler(tag: 3263, GET) -> 540 +2013-08-27 01:14:04,471+0000 INFO GetFileHandler Handler(tag: 540, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,471+0000 INFO GetFileHandler Handler(tag: 540, GET) reader: LR-Handler(tag: 540, GET) +2013-08-27 01:14:04,471+0000 INFO GetFileHandler Handler(tag: 540, GET) sending length: 1925, 2029742554 +2013-08-27 01:14:04,471+0000 INFO ReadBuffer RB-LR-Handler(tag: 540, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,471+0000 INFO ReadBuffer RB-LR-Handler(tag: 540, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,471+0000 INFO LocalIOProvider LR-Handler(tag: 540, GET) rbuf: RB-LR-Handler(tag: 540, GET) +2013-08-27 01:14:04,471+0000 INFO GetFileHandler Handler(tag: 540, GET) unregistering (last) +2013-08-27 01:14:04,471+0000 INFO ReadBuffer RB-LR-Handler(tag: 540, GET) de-allocating 1 buffers +2013-08-27 01:14:04,471+0000 INFO GetFileHandler Handler(tag: 3263, GET) sending length: 1925, 114291584 +2013-08-27 01:14:04,471+0000 INFO GetFileHandler Handler(tag: 3263, GET) unregistering (last) +2013-08-27 01:14:04,471+0000 INFO GetFileHandler Handler(tag: 507, GET) unregistering (last) +2013-08-27 01:14:04,471+0000 INFO ReadBuffer RB-LR-Handler(tag: 507, GET) de-allocating 8 buffers +2013-08-27 01:14:04,471+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,471+0000 INFO RequestHandler Handler(tag: 2712, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,471+0000 INFO RequestHandler Handler(tag: 541, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,471+0000 INFO GetFileHandler Handler(tag: 3245, GET) unregistering (last) +2013-08-27 01:14:04,471+0000 INFO RequestHandler Handler(tag: 542, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,471+0000 INFO PutFileHandler Handler(tag: 2713, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/a/runampl-acztedel/wrapper.error +2013-08-27 01:14:04,471+0000 INFO PutFileHandler Handler(tag: 2713, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-acztedel.error +2013-08-27 01:14:04,471+0000 INFO PutFileCommand Sending Command(tag: 543, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,471+0000 INFO PutFileCommand Command(tag: 543, PUT) (t) sending data +2013-08-27 01:14:04,472+0000 INFO PutFileHandler Handler(tag: 2713, PUT) -> 543 +2013-08-27 01:14:04,472+0000 INFO PutFileHandler Handler(tag: 543, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/a/runampl-acztedel/wrapper.error +2013-08-27 01:14:04,472+0000 INFO PutFileHandler Handler(tag: 543, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-acztedel.error +2013-08-27 01:14:04,472+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,472+0000 INFO RequestHandler Handler(tag: 3264, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,472+0000 INFO RequestHandler Handler(tag: 544, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,472+0000 INFO GetFileHandler Handler(tag: 3265, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,472+0000 INFO PutFileHandler Handler(tag: 543, PUT) Transfer done +2013-08-27 01:14:04,472+0000 INFO RequestHandler Handler(tag: 543, PUT) unregistering (send) +2013-08-27 01:14:04,472+0000 INFO GetFileHandler Handler(tag: 3265, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,472+0000 INFO PutFileHandler Handler(tag: 2713, PUT) Transfer done +2013-08-27 01:14:04,472+0000 INFO GetFileHandler Handler(tag: 3265, GET) -> 545 +2013-08-27 01:14:04,472+0000 INFO RequestHandler Handler(tag: 2713, PUT) unregistering (send) +2013-08-27 01:14:04,472+0000 INFO GetFileHandler Handler(tag: 545, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,472+0000 INFO GetFileHandler Handler(tag: 545, GET) reader: LR-Handler(tag: 545, GET) +2013-08-27 01:14:04,472+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,472+0000 INFO GetFileHandler Handler(tag: 545, GET) sending length: 1925, 170381322 +2013-08-27 01:14:04,472+0000 INFO RequestHandler Handler(tag: 2714, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,472+0000 INFO ReadBuffer RB-LR-Handler(tag: 545, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,472+0000 INFO GetFileHandler Handler(tag: 3265, GET) sending length: 1925, 1003177403 +2013-08-27 01:14:04,472+0000 INFO ReadBuffer RB-LR-Handler(tag: 545, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,472+0000 INFO LocalIOProvider LR-Handler(tag: 545, GET) rbuf: RB-LR-Handler(tag: 545, GET) +2013-08-27 01:14:04,472+0000 INFO PutFileHandler Handler(tag: 2715, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/g/runampl-gcztedel/wrapper.error +2013-08-27 01:14:04,472+0000 INFO GetFileHandler Handler(tag: 545, GET) unregistering (last) +2013-08-27 01:14:04,472+0000 INFO PutFileHandler Handler(tag: 2715, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-gcztedel.error +2013-08-27 01:14:04,472+0000 INFO ReadBuffer RB-LR-Handler(tag: 545, GET) de-allocating 1 buffers +2013-08-27 01:14:04,472+0000 INFO GetFileHandler Handler(tag: 3265, GET) unregistering (last) +2013-08-27 01:14:04,472+0000 INFO RequestHandler Handler(tag: 546, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,472+0000 INFO PutFileCommand Sending Command(tag: 547, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,472+0000 INFO PutFileCommand Command(tag: 547, PUT) (t) sending data +2013-08-27 01:14:04,472+0000 INFO PutFileHandler Handler(tag: 547, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/g/runampl-gcztedel/wrapper.error +2013-08-27 01:14:04,472+0000 INFO PutFileHandler Handler(tag: 2715, PUT) -> 547 +2013-08-27 01:14:04,472+0000 INFO PutFileHandler Handler(tag: 547, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-gcztedel.error +2013-08-27 01:14:04,472+0000 INFO RequestHandler Handler(tag: 548, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,473+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,473+0000 INFO RequestHandler Handler(tag: 3266, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,473+0000 INFO RequestHandler Handler(tag: 549, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,473+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,473+0000 INFO PutFileHandler Handler(tag: 547, PUT) Transfer done +2013-08-27 01:14:04,473+0000 INFO RequestHandler Handler(tag: 2716, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,473+0000 INFO RequestHandler Handler(tag: 550, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,473+0000 INFO RequestHandler Handler(tag: 547, PUT) unregistering (send) +2013-08-27 01:14:04,473+0000 INFO PutFileHandler Handler(tag: 2715, PUT) Transfer done +2013-08-27 01:14:04,473+0000 INFO RequestHandler Handler(tag: 2715, PUT) unregistering (send) +2013-08-27 01:14:04,473+0000 INFO GetFileHandler Handler(tag: 3267, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,473+0000 INFO GetFileHandler Handler(tag: 3267, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,473+0000 INFO GetFileHandler Handler(tag: 3267, GET) -> 551 +2013-08-27 01:14:04,473+0000 INFO GetFileHandler Handler(tag: 551, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,473+0000 INFO PutFileHandler Handler(tag: 2717, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/a/runampl-acztedel/wrapper.log +2013-08-27 01:14:04,473+0000 INFO GetFileHandler Handler(tag: 551, GET) reader: LR-Handler(tag: 551, GET) +2013-08-27 01:14:04,473+0000 INFO PutFileHandler Handler(tag: 2717, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-acztedel.info +2013-08-27 01:14:04,473+0000 INFO GetFileHandler Handler(tag: 551, GET) sending length: 1925, 1354255499 +2013-08-27 01:14:04,473+0000 INFO PutFileCommand Sending Command(tag: 552, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,473+0000 INFO ReadBuffer RB-LR-Handler(tag: 551, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,473+0000 INFO GetFileHandler Handler(tag: 3267, GET) sending length: 1925, 1940480787 +2013-08-27 01:14:04,473+0000 INFO PutFileCommand Command(tag: 552, PUT) (t) sending data +2013-08-27 01:14:04,473+0000 INFO GetFileHandler Handler(tag: 551, GET) unregistering (last) +2013-08-27 01:14:04,473+0000 INFO PutFileHandler Handler(tag: 2717, PUT) -> 552 +2013-08-27 01:14:04,473+0000 INFO GetFileHandler Handler(tag: 3267, GET) unregistering (last) +2013-08-27 01:14:04,473+0000 INFO ReadBuffer RB-LR-Handler(tag: 551, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,473+0000 INFO LocalIOProvider LR-Handler(tag: 551, GET) rbuf: RB-LR-Handler(tag: 551, GET) +2013-08-27 01:14:04,473+0000 INFO ReadBuffer RB-LR-Handler(tag: 551, GET) de-allocating 1 buffers +2013-08-27 01:14:04,473+0000 INFO PutFileHandler Handler(tag: 552, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/a/runampl-acztedel/wrapper.log +2013-08-27 01:14:04,473+0000 INFO PutFileHandler Handler(tag: 552, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-acztedel.info +2013-08-27 01:14:04,473+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,473+0000 INFO RequestHandler Handler(tag: 2718, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,473+0000 INFO RequestHandler Handler(tag: 553, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,473+0000 INFO PutFileHandler Handler(tag: 2719, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/g/runampl-gcztedel/wrapper.log +2013-08-27 01:14:04,473+0000 INFO PutFileHandler Handler(tag: 2719, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-gcztedel.info +2013-08-27 01:14:04,473+0000 INFO PutFileCommand Sending Command(tag: 554, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,473+0000 INFO PutFileCommand Command(tag: 554, PUT) (t) sending data +2013-08-27 01:14:04,473+0000 INFO PutFileHandler Handler(tag: 2719, PUT) -> 554 +2013-08-27 01:14:04,473+0000 INFO PutFileHandler Handler(tag: 554, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/g/runampl-gcztedel/wrapper.log +2013-08-27 01:14:04,473+0000 INFO PutFileHandler Handler(tag: 554, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-gcztedel.info +2013-08-27 01:14:04,474+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,474+0000 INFO RequestHandler Handler(tag: 2720, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,474+0000 INFO RequestHandler Handler(tag: 555, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,474+0000 INFO PutFileHandler Handler(tag: 2721, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/l/runampl-lcztedel/wrapper.log +2013-08-27 01:14:04,474+0000 INFO PutFileHandler Handler(tag: 2721, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-lcztedel.info +2013-08-27 01:14:04,474+0000 INFO PutFileCommand Sending Command(tag: 556, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,474+0000 INFO PutFileCommand Command(tag: 556, PUT) (t) sending data +2013-08-27 01:14:04,474+0000 INFO PutFileHandler Handler(tag: 2721, PUT) -> 556 +2013-08-27 01:14:04,474+0000 INFO PutFileHandler Handler(tag: 556, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/l/runampl-lcztedel/wrapper.log +2013-08-27 01:14:04,474+0000 INFO PutFileHandler Handler(tag: 556, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-lcztedel.info +2013-08-27 01:14:04,474+0000 INFO GetFileHandler Handler(tag: 3268, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:04,474+0000 INFO GetFileHandler Handler(tag: 3268, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:04,474+0000 INFO GetFileHandler Handler(tag: 3268, GET) -> 557 +2013-08-27 01:14:04,474+0000 INFO GetFileHandler Handler(tag: 557, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:04,474+0000 INFO GetFileHandler Handler(tag: 557, GET) reader: LR-Handler(tag: 557, GET) +2013-08-27 01:14:04,474+0000 INFO GetFileHandler Handler(tag: 557, GET) sending length: 543, 444126246 +2013-08-27 01:14:04,474+0000 INFO ReadBuffer RB-LR-Handler(tag: 557, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:04,474+0000 INFO GetFileHandler Handler(tag: 3268, GET) sending length: 543, 1924143197 +2013-08-27 01:14:04,474+0000 INFO ReadBuffer RB-LR-Handler(tag: 557, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,474+0000 INFO LocalIOProvider LR-Handler(tag: 557, GET) rbuf: RB-LR-Handler(tag: 557, GET) +2013-08-27 01:14:04,474+0000 INFO GetFileHandler Handler(tag: 557, GET) unregistering (last) +2013-08-27 01:14:04,474+0000 INFO ReadBuffer RB-LR-Handler(tag: 557, GET) de-allocating 1 buffers +2013-08-27 01:14:04,475+0000 INFO PutFileHandler Handler(tag: 552, PUT) Transfer done +2013-08-27 01:14:04,475+0000 INFO RequestHandler Handler(tag: 552, PUT) unregistering (send) +2013-08-27 01:14:04,475+0000 INFO PutFileHandler Handler(tag: 2717, PUT) Transfer done +2013-08-27 01:14:04,475+0000 INFO GetFileHandler Handler(tag: 3268, GET) unregistering (last) +2013-08-27 01:14:04,475+0000 INFO RequestHandler Handler(tag: 2717, PUT) unregistering (send) +2013-08-27 01:14:04,476+0000 INFO GetFileHandler Handler(tag: 3269, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:04,476+0000 INFO GetFileHandler Handler(tag: 3269, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:04,476+0000 INFO GetFileHandler Handler(tag: 3269, GET) -> 558 +2013-08-27 01:14:04,476+0000 INFO GetFileHandler Handler(tag: 558, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:04,476+0000 INFO GetFileHandler Handler(tag: 558, GET) reader: LR-Handler(tag: 558, GET) +2013-08-27 01:14:04,476+0000 INFO GetFileHandler Handler(tag: 558, GET) sending length: 543, 684115901 +2013-08-27 01:14:04,476+0000 INFO GetFileHandler Handler(tag: 3269, GET) sending length: 543, 308502069 +2013-08-27 01:14:04,476+0000 INFO ReadBuffer RB-LR-Handler(tag: 558, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:04,476+0000 INFO ReadBuffer RB-LR-Handler(tag: 558, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,476+0000 INFO LocalIOProvider LR-Handler(tag: 558, GET) rbuf: RB-LR-Handler(tag: 558, GET) +2013-08-27 01:14:04,476+0000 INFO GetFileHandler Handler(tag: 558, GET) unregistering (last) +2013-08-27 01:14:04,476+0000 INFO ReadBuffer RB-LR-Handler(tag: 558, GET) de-allocating 1 buffers +2013-08-27 01:14:04,476+0000 INFO GetFileHandler Handler(tag: 3269, GET) unregistering (last) +2013-08-27 01:14:04,477+0000 INFO PutFileHandler Handler(tag: 554, PUT) Transfer done +2013-08-27 01:14:04,477+0000 INFO RequestHandler Handler(tag: 554, PUT) unregistering (send) +2013-08-27 01:14:04,477+0000 INFO PutFileHandler Handler(tag: 2719, PUT) Transfer done +2013-08-27 01:14:04,477+0000 INFO RequestHandler Handler(tag: 2719, PUT) unregistering (send) +2013-08-27 01:14:04,477+0000 INFO GetFileHandler Handler(tag: 3270, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:04,477+0000 INFO GetFileHandler Handler(tag: 3270, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:04,477+0000 INFO GetFileHandler Handler(tag: 3270, GET) -> 559 +2013-08-27 01:14:04,477+0000 INFO GetFileHandler Handler(tag: 559, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:04,477+0000 INFO GetFileHandler Handler(tag: 559, GET) reader: LR-Handler(tag: 559, GET) +2013-08-27 01:14:04,477+0000 INFO GetFileHandler Handler(tag: 559, GET) sending length: 543, 525230202 +2013-08-27 01:14:04,477+0000 INFO ReadBuffer RB-LR-Handler(tag: 559, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:04,477+0000 INFO GetFileHandler Handler(tag: 3270, GET) sending length: 543, 1386215844 +2013-08-27 01:14:04,477+0000 INFO ReadBuffer RB-LR-Handler(tag: 559, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,477+0000 INFO LocalIOProvider LR-Handler(tag: 559, GET) rbuf: RB-LR-Handler(tag: 559, GET) +2013-08-27 01:14:04,477+0000 INFO GetFileHandler Handler(tag: 559, GET) unregistering (last) +2013-08-27 01:14:04,477+0000 INFO GetFileHandler Handler(tag: 3270, GET) unregistering (last) +2013-08-27 01:14:04,477+0000 INFO ReadBuffer RB-LR-Handler(tag: 559, GET) de-allocating 1 buffers +2013-08-27 01:14:04,478+0000 INFO GetFileHandler Handler(tag: 3271, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:04,478+0000 INFO GetFileHandler Handler(tag: 3271, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:04,479+0000 INFO GetFileHandler Handler(tag: 3271, GET) -> 560 +2013-08-27 01:14:04,479+0000 INFO GetFileHandler Handler(tag: 560, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:04,479+0000 INFO GetFileHandler Handler(tag: 560, GET) reader: LR-Handler(tag: 560, GET) +2013-08-27 01:14:04,479+0000 INFO GetFileHandler Handler(tag: 560, GET) sending length: 543, 939480969 +2013-08-27 01:14:04,479+0000 INFO ReadBuffer RB-LR-Handler(tag: 560, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:04,479+0000 INFO GetFileHandler Handler(tag: 3271, GET) sending length: 543, 1556873239 +2013-08-27 01:14:04,479+0000 INFO ReadBuffer RB-LR-Handler(tag: 560, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,479+0000 INFO LocalIOProvider LR-Handler(tag: 560, GET) rbuf: RB-LR-Handler(tag: 560, GET) +2013-08-27 01:14:04,479+0000 INFO GetFileHandler Handler(tag: 560, GET) unregistering (last) +2013-08-27 01:14:04,479+0000 INFO GetFileHandler Handler(tag: 3271, GET) unregistering (last) +2013-08-27 01:14:04,479+0000 INFO ReadBuffer RB-LR-Handler(tag: 560, GET) de-allocating 1 buffers +2013-08-27 01:14:04,484+0000 INFO PutFileHandler Handler(tag: 556, PUT) Transfer done +2013-08-27 01:14:04,484+0000 INFO RequestHandler Handler(tag: 556, PUT) unregistering (send) +2013-08-27 01:14:04,484+0000 INFO PutFileHandler Handler(tag: 2721, PUT) Transfer done +2013-08-27 01:14:04,484+0000 INFO RequestHandler Handler(tag: 2721, PUT) unregistering (send) +2013-08-27 01:14:04,484+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,484+0000 INFO RequestHandler Handler(tag: 561, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,484+0000 INFO RequestHandler Handler(tag: 2722, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,484+0000 INFO PutFileHandler Handler(tag: 2723, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/l/runampl-lcztedel/wrapper.error +2013-08-27 01:14:04,484+0000 INFO PutFileHandler Handler(tag: 2723, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-lcztedel.error +2013-08-27 01:14:04,484+0000 INFO PutFileCommand Sending Command(tag: 562, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,484+0000 INFO PutFileCommand Command(tag: 562, PUT) (t) sending data +2013-08-27 01:14:04,484+0000 INFO PutFileHandler Handler(tag: 2723, PUT) -> 562 +2013-08-27 01:14:04,484+0000 INFO PutFileHandler Handler(tag: 562, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/l/runampl-lcztedel/wrapper.error +2013-08-27 01:14:04,484+0000 INFO PutFileHandler Handler(tag: 562, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-lcztedel.error +2013-08-27 01:14:04,486+0000 INFO PutFileHandler Handler(tag: 562, PUT) Transfer done +2013-08-27 01:14:04,486+0000 INFO RequestHandler Handler(tag: 562, PUT) unregistering (send) +2013-08-27 01:14:04,486+0000 INFO PutFileHandler Handler(tag: 2723, PUT) Transfer done +2013-08-27 01:14:04,486+0000 INFO RequestHandler Handler(tag: 2723, PUT) unregistering (send) +2013-08-27 01:14:04,504+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,504+0000 INFO RequestHandler Handler(tag: 563, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,504+0000 INFO RequestHandler Handler(tag: 2724, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,505+0000 INFO PutFileHandler Handler(tag: 2725, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/7/runampl-7cztedel/wrapper.error +2013-08-27 01:14:04,505+0000 INFO PutFileHandler Handler(tag: 2725, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-7cztedel.error +2013-08-27 01:14:04,505+0000 INFO PutFileCommand Sending Command(tag: 564, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,505+0000 INFO PutFileCommand Command(tag: 564, PUT) (t) sending data +2013-08-27 01:14:04,505+0000 INFO PutFileHandler Handler(tag: 2725, PUT) -> 564 +2013-08-27 01:14:04,505+0000 INFO PutFileHandler Handler(tag: 564, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/7/runampl-7cztedel/wrapper.error +2013-08-27 01:14:04,505+0000 INFO PutFileHandler Handler(tag: 564, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-7cztedel.error +2013-08-27 01:14:04,505+0000 INFO PutFileHandler Handler(tag: 564, PUT) Transfer done +2013-08-27 01:14:04,505+0000 INFO RequestHandler Handler(tag: 564, PUT) unregistering (send) +2013-08-27 01:14:04,505+0000 INFO PutFileHandler Handler(tag: 2725, PUT) Transfer done +2013-08-27 01:14:04,505+0000 INFO RequestHandler Handler(tag: 2725, PUT) unregistering (send) +2013-08-27 01:14:04,505+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,505+0000 INFO RequestHandler Handler(tag: 2726, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,505+0000 INFO RequestHandler Handler(tag: 565, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,505+0000 INFO PutFileHandler Handler(tag: 2727, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/7/runampl-7cztedel/wrapper.log +2013-08-27 01:14:04,506+0000 INFO PutFileHandler Handler(tag: 2727, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-7cztedel.info +2013-08-27 01:14:04,506+0000 INFO PutFileCommand Sending Command(tag: 566, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,506+0000 INFO PutFileCommand Command(tag: 566, PUT) (t) sending data +2013-08-27 01:14:04,506+0000 INFO PutFileHandler Handler(tag: 2727, PUT) -> 566 +2013-08-27 01:14:04,506+0000 INFO PutFileHandler Handler(tag: 566, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/7/runampl-7cztedel/wrapper.log +2013-08-27 01:14:04,506+0000 INFO PutFileHandler Handler(tag: 566, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-7cztedel.info +2013-08-27 01:14:04,507+0000 INFO PutFileHandler Handler(tag: 566, PUT) Transfer done +2013-08-27 01:14:04,507+0000 INFO RequestHandler Handler(tag: 566, PUT) unregistering (send) +2013-08-27 01:14:04,507+0000 INFO PutFileHandler Handler(tag: 2727, PUT) Transfer done +2013-08-27 01:14:04,507+0000 INFO RequestHandler Handler(tag: 2727, PUT) unregistering (send) +2013-08-27 01:14:04,509+0000 INFO GetFileHandler Handler(tag: 3272, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,509+0000 INFO GetFileHandler Handler(tag: 3272, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,509+0000 INFO GetFileHandler Handler(tag: 3272, GET) -> 567 +2013-08-27 01:14:04,509+0000 INFO GetFileHandler Handler(tag: 567, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,509+0000 INFO GetFileHandler Handler(tag: 567, GET) reader: LR-Handler(tag: 567, GET) +2013-08-27 01:14:04,509+0000 INFO GetFileHandler Handler(tag: 567, GET) sending length: 14799449, 1347371049 +2013-08-27 01:14:04,509+0000 INFO ReadBuffer RB-LR-Handler(tag: 567, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,509+0000 INFO GetFileHandler Handler(tag: 3272, GET) sending length: 14799449, 50162928 +2013-08-27 01:14:04,509+0000 INFO ReadBuffer RB-LR-Handler(tag: 567, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,509+0000 INFO LocalIOProvider LR-Handler(tag: 567, GET) rbuf: RB-LR-Handler(tag: 567, GET) +2013-08-27 01:14:04,514+0000 INFO ProxyIOProvider Command(tag: 567, GET) suspending +2013-08-27 01:14:04,514+0000 INFO GetFileHandler Handler(tag: 567, GET) suspending +2013-08-27 01:14:04,531+0000 INFO GetFileHandler Handler(tag: 3273, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,532+0000 INFO GetFileHandler Handler(tag: 3273, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,532+0000 INFO GetFileHandler Handler(tag: 3273, GET) -> 568 +2013-08-27 01:14:04,532+0000 INFO GetFileHandler Handler(tag: 568, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,532+0000 INFO GetFileHandler Handler(tag: 568, GET) reader: LR-Handler(tag: 568, GET) +2013-08-27 01:14:04,532+0000 INFO GetFileHandler Handler(tag: 568, GET) sending length: 14799449, 802485119 +2013-08-27 01:14:04,532+0000 INFO ReadBuffer RB-LR-Handler(tag: 568, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,532+0000 INFO ReadBuffer RB-LR-Handler(tag: 568, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,532+0000 INFO GetFileHandler Handler(tag: 3273, GET) sending length: 14799449, 1226353932 +2013-08-27 01:14:04,532+0000 INFO LocalIOProvider LR-Handler(tag: 568, GET) rbuf: RB-LR-Handler(tag: 568, GET) +2013-08-27 01:14:04,536+0000 INFO ProxyIOProvider Command(tag: 568, GET) suspending +2013-08-27 01:14:04,536+0000 INFO GetFileHandler Handler(tag: 568, GET) suspending +2013-08-27 01:14:04,537+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,537+0000 INFO RequestHandler Handler(tag: 2728, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,537+0000 INFO RequestHandler Handler(tag: 569, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,537+0000 INFO PutFileHandler Handler(tag: 2729, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/r/runampl-rcztedel/wrapper.log +2013-08-27 01:14:04,537+0000 INFO PutFileHandler Handler(tag: 2729, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-rcztedel.info +2013-08-27 01:14:04,537+0000 INFO PutFileCommand Sending Command(tag: 570, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,538+0000 INFO PutFileCommand Command(tag: 570, PUT) (t) sending data +2013-08-27 01:14:04,538+0000 INFO PutFileHandler Handler(tag: 2729, PUT) -> 570 +2013-08-27 01:14:04,538+0000 INFO PutFileHandler Handler(tag: 570, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/r/runampl-rcztedel/wrapper.log +2013-08-27 01:14:04,538+0000 INFO PutFileHandler Handler(tag: 570, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-rcztedel.info +2013-08-27 01:14:04,538+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,538+0000 INFO RequestHandler Handler(tag: 2730, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,538+0000 INFO RequestHandler Handler(tag: 571, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,538+0000 INFO PutFileHandler Handler(tag: 2731, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/n/runampl-ncztedel/wrapper.error +2013-08-27 01:14:04,538+0000 INFO PutFileHandler Handler(tag: 2731, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ncztedel.error +2013-08-27 01:14:04,538+0000 INFO PutFileCommand Sending Command(tag: 572, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,538+0000 INFO PutFileCommand Command(tag: 572, PUT) (t) sending data +2013-08-27 01:14:04,538+0000 INFO PutFileHandler Handler(tag: 2731, PUT) -> 572 +2013-08-27 01:14:04,539+0000 INFO PutFileHandler Handler(tag: 572, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/n/runampl-ncztedel/wrapper.error +2013-08-27 01:14:04,539+0000 INFO PutFileHandler Handler(tag: 572, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ncztedel.error +2013-08-27 01:14:04,539+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,539+0000 INFO RequestHandler Handler(tag: 2732, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,539+0000 INFO RequestHandler Handler(tag: 573, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,539+0000 INFO PutFileHandler Handler(tag: 2733, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/n/runampl-ncztedel/wrapper.log +2013-08-27 01:14:04,539+0000 INFO PutFileHandler Handler(tag: 2733, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ncztedel.info +2013-08-27 01:14:04,539+0000 INFO PutFileCommand Sending Command(tag: 574, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,539+0000 INFO PutFileCommand Command(tag: 574, PUT) (t) sending data +2013-08-27 01:14:04,539+0000 INFO PutFileHandler Handler(tag: 2733, PUT) -> 574 +2013-08-27 01:14:04,539+0000 INFO PutFileHandler Handler(tag: 574, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/n/runampl-ncztedel/wrapper.log +2013-08-27 01:14:04,539+0000 INFO PutFileHandler Handler(tag: 574, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ncztedel.info +2013-08-27 01:14:04,539+0000 INFO PutFileHandler Handler(tag: 572, PUT) Transfer done +2013-08-27 01:14:04,539+0000 INFO RequestHandler Handler(tag: 572, PUT) unregistering (send) +2013-08-27 01:14:04,539+0000 INFO PutFileHandler Handler(tag: 2731, PUT) Transfer done +2013-08-27 01:14:04,539+0000 INFO RequestHandler Handler(tag: 2731, PUT) unregistering (send) +2013-08-27 01:14:04,539+0000 INFO PutFileHandler Handler(tag: 570, PUT) Transfer done +2013-08-27 01:14:04,539+0000 INFO RequestHandler Handler(tag: 570, PUT) unregistering (send) +2013-08-27 01:14:04,539+0000 INFO PutFileHandler Handler(tag: 2729, PUT) Transfer done +2013-08-27 01:14:04,539+0000 INFO RequestHandler Handler(tag: 2729, PUT) unregistering (send) +2013-08-27 01:14:04,539+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,540+0000 INFO RequestHandler Handler(tag: 2734, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,540+0000 INFO RequestHandler Handler(tag: 575, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,540+0000 INFO PutFileHandler Handler(tag: 2735, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/d/runampl-dcztedel/wrapper.log +2013-08-27 01:14:04,540+0000 INFO PutFileHandler Handler(tag: 2735, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-dcztedel.info +2013-08-27 01:14:04,540+0000 INFO PutFileCommand Sending Command(tag: 576, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,540+0000 INFO PutFileCommand Command(tag: 576, PUT) (t) sending data +2013-08-27 01:14:04,540+0000 INFO PutFileHandler Handler(tag: 2735, PUT) -> 576 +2013-08-27 01:14:04,540+0000 INFO PutFileHandler Handler(tag: 576, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/d/runampl-dcztedel/wrapper.log +2013-08-27 01:14:04,540+0000 INFO PutFileHandler Handler(tag: 576, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-dcztedel.info +2013-08-27 01:14:04,540+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,540+0000 INFO RequestHandler Handler(tag: 2736, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,540+0000 INFO RequestHandler Handler(tag: 577, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,540+0000 INFO PutFileHandler Handler(tag: 2737, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/q/runampl-qcztedel/wrapper.error +2013-08-27 01:14:04,540+0000 INFO PutFileHandler Handler(tag: 2737, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-qcztedel.error +2013-08-27 01:14:04,540+0000 INFO PutFileCommand Sending Command(tag: 578, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,540+0000 INFO PutFileCommand Command(tag: 578, PUT) (t) sending data +2013-08-27 01:14:04,540+0000 INFO PutFileHandler Handler(tag: 2737, PUT) -> 578 +2013-08-27 01:14:04,540+0000 INFO PutFileHandler Handler(tag: 578, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/q/runampl-qcztedel/wrapper.error +2013-08-27 01:14:04,540+0000 INFO PutFileHandler Handler(tag: 578, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-qcztedel.error +2013-08-27 01:14:04,540+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,540+0000 INFO RequestHandler Handler(tag: 2738, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,540+0000 INFO RequestHandler Handler(tag: 579, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,540+0000 INFO PutFileHandler Handler(tag: 2739, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/9/runampl-9cztedel/wrapper.log +2013-08-27 01:14:04,540+0000 INFO PutFileHandler Handler(tag: 2739, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-9cztedel.info +2013-08-27 01:14:04,540+0000 INFO PutFileCommand Sending Command(tag: 580, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,540+0000 INFO PutFileCommand Command(tag: 580, PUT) (t) sending data +2013-08-27 01:14:04,540+0000 INFO PutFileHandler Handler(tag: 2739, PUT) -> 580 +2013-08-27 01:14:04,540+0000 INFO PutFileHandler Handler(tag: 578, PUT) Transfer done +2013-08-27 01:14:04,540+0000 INFO PutFileHandler Handler(tag: 580, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/9/runampl-9cztedel/wrapper.log +2013-08-27 01:14:04,540+0000 INFO PutFileHandler Handler(tag: 580, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-9cztedel.info +2013-08-27 01:14:04,540+0000 INFO RequestHandler Handler(tag: 578, PUT) unregistering (send) +2013-08-27 01:14:04,541+0000 INFO PutFileHandler Handler(tag: 2737, PUT) Transfer done +2013-08-27 01:14:04,541+0000 INFO RequestHandler Handler(tag: 2737, PUT) unregistering (send) +2013-08-27 01:14:04,541+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,541+0000 INFO RequestHandler Handler(tag: 2740, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,541+0000 INFO RequestHandler Handler(tag: 581, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,541+0000 INFO PutFileHandler Handler(tag: 2741, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/r/runampl-rcztedel/wrapper.error +2013-08-27 01:14:04,541+0000 INFO PutFileHandler Handler(tag: 2741, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-rcztedel.error +2013-08-27 01:14:04,541+0000 INFO PutFileCommand Sending Command(tag: 582, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,541+0000 INFO PutFileCommand Command(tag: 582, PUT) (t) sending data +2013-08-27 01:14:04,541+0000 INFO PutFileHandler Handler(tag: 2741, PUT) -> 582 +2013-08-27 01:14:04,541+0000 INFO PutFileHandler Handler(tag: 582, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/r/runampl-rcztedel/wrapper.error +2013-08-27 01:14:04,541+0000 INFO PutFileHandler Handler(tag: 582, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-rcztedel.error +2013-08-27 01:14:04,541+0000 INFO PutFileHandler Handler(tag: 582, PUT) Transfer done +2013-08-27 01:14:04,541+0000 INFO RequestHandler Handler(tag: 582, PUT) unregistering (send) +2013-08-27 01:14:04,541+0000 INFO PutFileHandler Handler(tag: 2741, PUT) Transfer done +2013-08-27 01:14:04,541+0000 INFO RequestHandler Handler(tag: 2741, PUT) unregistering (send) +2013-08-27 01:14:04,547+0000 INFO PutFileHandler Handler(tag: 574, PUT) Transfer done +2013-08-27 01:14:04,547+0000 INFO RequestHandler Handler(tag: 574, PUT) unregistering (send) +2013-08-27 01:14:04,547+0000 INFO PutFileHandler Handler(tag: 2733, PUT) Transfer done +2013-08-27 01:14:04,547+0000 INFO GetFileHandler Handler(tag: 3274, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,547+0000 INFO RequestHandler Handler(tag: 2733, PUT) unregistering (send) +2013-08-27 01:14:04,547+0000 INFO GetFileHandler Handler(tag: 3274, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,547+0000 INFO GetFileHandler Handler(tag: 3274, GET) -> 583 +2013-08-27 01:14:04,548+0000 INFO GetFileHandler Handler(tag: 583, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,548+0000 INFO GetFileHandler Handler(tag: 583, GET) reader: LR-Handler(tag: 583, GET) +2013-08-27 01:14:04,548+0000 INFO GetFileHandler Handler(tag: 583, GET) sending length: 14799449, 711210194 +2013-08-27 01:14:04,548+0000 INFO ReadBuffer RB-LR-Handler(tag: 583, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,548+0000 INFO GetFileHandler Handler(tag: 3274, GET) sending length: 14799449, 415751356 +2013-08-27 01:14:04,548+0000 INFO ReadBuffer RB-LR-Handler(tag: 583, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,548+0000 INFO LocalIOProvider LR-Handler(tag: 583, GET) rbuf: RB-LR-Handler(tag: 583, GET) +2013-08-27 01:14:04,551+0000 INFO ProxyIOProvider Command(tag: 583, GET) suspending +2013-08-27 01:14:04,551+0000 INFO GetFileHandler Handler(tag: 583, GET) suspending +2013-08-27 01:14:04,555+0000 INFO PutFileHandler Handler(tag: 576, PUT) Transfer done +2013-08-27 01:14:04,555+0000 INFO RequestHandler Handler(tag: 576, PUT) unregistering (send) +2013-08-27 01:14:04,555+0000 INFO PutFileHandler Handler(tag: 2735, PUT) Transfer done +2013-08-27 01:14:04,555+0000 INFO RequestHandler Handler(tag: 2735, PUT) unregistering (send) +2013-08-27 01:14:04,556+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,556+0000 INFO RequestHandler Handler(tag: 2742, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,556+0000 INFO RequestHandler Handler(tag: 584, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,556+0000 INFO PutFileHandler Handler(tag: 2743, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/q/runampl-qcztedel/wrapper.log +2013-08-27 01:14:04,556+0000 INFO PutFileHandler Handler(tag: 2743, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-qcztedel.info +2013-08-27 01:14:04,556+0000 INFO PutFileCommand Sending Command(tag: 585, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,556+0000 INFO PutFileCommand Command(tag: 585, PUT) (t) sending data +2013-08-27 01:14:04,556+0000 INFO PutFileHandler Handler(tag: 2743, PUT) -> 585 +2013-08-27 01:14:04,556+0000 INFO PutFileHandler Handler(tag: 585, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/q/runampl-qcztedel/wrapper.log +2013-08-27 01:14:04,556+0000 INFO PutFileHandler Handler(tag: 585, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-qcztedel.info +2013-08-27 01:14:04,557+0000 INFO PutFileHandler Handler(tag: 580, PUT) Transfer done +2013-08-27 01:14:04,557+0000 INFO RequestHandler Handler(tag: 580, PUT) unregistering (send) +2013-08-27 01:14:04,557+0000 INFO PutFileHandler Handler(tag: 2739, PUT) Transfer done +2013-08-27 01:14:04,557+0000 INFO RequestHandler Handler(tag: 2739, PUT) unregistering (send) +2013-08-27 01:14:04,558+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,558+0000 INFO RequestHandler Handler(tag: 2744, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,558+0000 INFO RequestHandler Handler(tag: 586, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,558+0000 INFO PutFileHandler Handler(tag: 2745, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/d/runampl-dcztedel/wrapper.error +2013-08-27 01:14:04,558+0000 INFO PutFileHandler Handler(tag: 2745, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-dcztedel.error +2013-08-27 01:14:04,558+0000 INFO PutFileCommand Sending Command(tag: 587, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,558+0000 INFO PutFileCommand Command(tag: 587, PUT) (t) sending data +2013-08-27 01:14:04,558+0000 INFO PutFileHandler Handler(tag: 2745, PUT) -> 587 +2013-08-27 01:14:04,558+0000 INFO PutFileHandler Handler(tag: 587, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/d/runampl-dcztedel/wrapper.error +2013-08-27 01:14:04,558+0000 INFO PutFileHandler Handler(tag: 587, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-dcztedel.error +2013-08-27 01:14:04,558+0000 INFO PutFileHandler Handler(tag: 587, PUT) Transfer done +2013-08-27 01:14:04,558+0000 INFO RequestHandler Handler(tag: 587, PUT) unregistering (send) +2013-08-27 01:14:04,558+0000 INFO PutFileHandler Handler(tag: 2745, PUT) Transfer done +2013-08-27 01:14:04,558+0000 INFO RequestHandler Handler(tag: 2745, PUT) unregistering (send) +2013-08-27 01:14:04,561+0000 INFO GetFileHandler Handler(tag: 3275, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,561+0000 INFO GetFileHandler Handler(tag: 3275, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,561+0000 INFO GetFileHandler Handler(tag: 3275, GET) -> 588 +2013-08-27 01:14:04,561+0000 INFO GetFileHandler Handler(tag: 588, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,561+0000 INFO GetFileHandler Handler(tag: 588, GET) reader: LR-Handler(tag: 588, GET) +2013-08-27 01:14:04,561+0000 INFO GetFileHandler Handler(tag: 588, GET) sending length: 14799449, 1999234218 +2013-08-27 01:14:04,561+0000 INFO ReadBuffer RB-LR-Handler(tag: 588, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,561+0000 INFO GetFileHandler Handler(tag: 3275, GET) sending length: 14799449, 1600360964 +2013-08-27 01:14:04,561+0000 INFO ReadBuffer RB-LR-Handler(tag: 588, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,561+0000 INFO LocalIOProvider LR-Handler(tag: 588, GET) rbuf: RB-LR-Handler(tag: 588, GET) +2013-08-27 01:14:04,565+0000 INFO ProxyIOProvider Command(tag: 588, GET) suspending +2013-08-27 01:14:04,565+0000 INFO GetFileHandler Handler(tag: 588, GET) suspending +2013-08-27 01:14:04,566+0000 INFO PutFileHandler Handler(tag: 585, PUT) Transfer done +2013-08-27 01:14:04,566+0000 INFO RequestHandler Handler(tag: 585, PUT) unregistering (send) +2013-08-27 01:14:04,566+0000 INFO PutFileHandler Handler(tag: 2743, PUT) Transfer done +2013-08-27 01:14:04,566+0000 INFO RequestHandler Handler(tag: 2743, PUT) unregistering (send) +2013-08-27 01:14:04,573+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,573+0000 INFO RequestHandler Handler(tag: 2746, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,573+0000 INFO RequestHandler Handler(tag: 589, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,574+0000 INFO PutFileHandler Handler(tag: 2747, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/9/runampl-9cztedel/wrapper.error +2013-08-27 01:14:04,574+0000 INFO PutFileHandler Handler(tag: 2747, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-9cztedel.error +2013-08-27 01:14:04,574+0000 INFO PutFileCommand Sending Command(tag: 590, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,574+0000 INFO PutFileCommand Command(tag: 590, PUT) (t) sending data +2013-08-27 01:14:04,574+0000 INFO PutFileHandler Handler(tag: 2747, PUT) -> 590 +2013-08-27 01:14:04,574+0000 INFO PutFileHandler Handler(tag: 590, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/9/runampl-9cztedel/wrapper.error +2013-08-27 01:14:04,574+0000 INFO PutFileHandler Handler(tag: 590, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-9cztedel.error +2013-08-27 01:14:04,574+0000 INFO PutFileHandler Handler(tag: 590, PUT) Transfer done +2013-08-27 01:14:04,574+0000 INFO RequestHandler Handler(tag: 590, PUT) unregistering (send) +2013-08-27 01:14:04,574+0000 INFO PutFileHandler Handler(tag: 2747, PUT) Transfer done +2013-08-27 01:14:04,574+0000 INFO RequestHandler Handler(tag: 2747, PUT) unregistering (send) +2013-08-27 01:14:04,574+0000 INFO GetFileHandler Handler(tag: 3276, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,575+0000 INFO GetFileHandler Handler(tag: 3276, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,575+0000 INFO GetFileHandler Handler(tag: 3276, GET) -> 591 +2013-08-27 01:14:04,575+0000 INFO GetFileHandler Handler(tag: 591, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,575+0000 INFO GetFileHandler Handler(tag: 591, GET) reader: LR-Handler(tag: 591, GET) +2013-08-27 01:14:04,575+0000 INFO GetFileHandler Handler(tag: 591, GET) sending length: 14799449, 764557967 +2013-08-27 01:14:04,575+0000 INFO ReadBuffer RB-LR-Handler(tag: 591, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,575+0000 INFO GetFileHandler Handler(tag: 3276, GET) sending length: 14799449, 1903563622 +2013-08-27 01:14:04,575+0000 INFO ReadBuffer RB-LR-Handler(tag: 591, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,575+0000 INFO LocalIOProvider LR-Handler(tag: 591, GET) rbuf: RB-LR-Handler(tag: 591, GET) +2013-08-27 01:14:04,581+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,582+0000 INFO RequestHandler Handler(tag: 2748, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,582+0000 INFO RequestHandler Handler(tag: 592, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,582+0000 INFO PutFileHandler Handler(tag: 2749, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/e/runampl-ecztedel/wrapper.error +2013-08-27 01:14:04,582+0000 INFO PutFileHandler Handler(tag: 2749, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ecztedel.error +2013-08-27 01:14:04,582+0000 INFO PutFileCommand Sending Command(tag: 593, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,582+0000 INFO PutFileCommand Command(tag: 593, PUT) (t) sending data +2013-08-27 01:14:04,582+0000 INFO PutFileHandler Handler(tag: 2749, PUT) -> 593 +2013-08-27 01:14:04,582+0000 INFO PutFileHandler Handler(tag: 593, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/e/runampl-ecztedel/wrapper.error +2013-08-27 01:14:04,582+0000 INFO PutFileHandler Handler(tag: 593, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ecztedel.error +2013-08-27 01:14:04,582+0000 INFO PutFileHandler Handler(tag: 593, PUT) Transfer done +2013-08-27 01:14:04,582+0000 INFO RequestHandler Handler(tag: 593, PUT) unregistering (send) +2013-08-27 01:14:04,583+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:04,583+0000 INFO RequestHandler Handler(tag: 2750, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,583+0000 INFO RequestHandler Handler(tag: 594, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,583+0000 INFO PutFileHandler Handler(tag: 2751, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/e/runampl-ecztedel/wrapper.log +2013-08-27 01:14:04,583+0000 INFO PutFileHandler Handler(tag: 2751, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ecztedel.info +2013-08-27 01:14:04,583+0000 INFO PutFileCommand Sending Command(tag: 595, PUT) (t) on cpipe://1 +2013-08-27 01:14:04,583+0000 INFO PutFileCommand Command(tag: 595, PUT) (t) sending data +2013-08-27 01:14:04,583+0000 INFO PutFileHandler Handler(tag: 2751, PUT) -> 595 +2013-08-27 01:14:04,583+0000 INFO PutFileHandler Handler(tag: 595, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/e/runampl-ecztedel/wrapper.log +2013-08-27 01:14:04,583+0000 INFO PutFileHandler Handler(tag: 595, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-ecztedel.info +2013-08-27 01:14:04,585+0000 INFO PutFileHandler Handler(tag: 595, PUT) Transfer done +2013-08-27 01:14:04,585+0000 INFO RequestHandler Handler(tag: 595, PUT) unregistering (send) +2013-08-27 01:14:04,585+0000 INFO PutFileHandler Handler(tag: 2749, PUT) Transfer done +2013-08-27 01:14:04,585+0000 INFO RequestHandler Handler(tag: 2749, PUT) unregistering (send) +2013-08-27 01:14:04,587+0000 INFO PutFileHandler Handler(tag: 2751, PUT) Transfer done +2013-08-27 01:14:04,587+0000 INFO RequestHandler Handler(tag: 2751, PUT) unregistering (send) +2013-08-27 01:14:04,591+0000 INFO GetFileHandler Handler(tag: 3277, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,591+0000 INFO GetFileHandler Handler(tag: 3277, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,591+0000 INFO GetFileHandler Handler(tag: 3277, GET) -> 596 +2013-08-27 01:14:04,591+0000 INFO GetFileHandler Handler(tag: 596, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,591+0000 INFO GetFileHandler Handler(tag: 596, GET) reader: LR-Handler(tag: 596, GET) +2013-08-27 01:14:04,591+0000 INFO GetFileHandler Handler(tag: 596, GET) sending length: 14799449, 622473303 +2013-08-27 01:14:04,591+0000 INFO ReadBuffer RB-LR-Handler(tag: 596, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,591+0000 INFO ReadBuffer RB-LR-Handler(tag: 596, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,591+0000 INFO LocalIOProvider LR-Handler(tag: 596, GET) rbuf: RB-LR-Handler(tag: 596, GET) +2013-08-27 01:14:04,595+0000 INFO GetFileHandler Handler(tag: 3277, GET) sending length: 14799449, 976656080 +2013-08-27 01:14:04,604+0000 INFO GetFileHandler Handler(tag: 3278, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,605+0000 INFO GetFileHandler Handler(tag: 3278, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,605+0000 INFO GetFileHandler Handler(tag: 3278, GET) -> 597 +2013-08-27 01:14:04,605+0000 INFO GetFileHandler Handler(tag: 597, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,605+0000 INFO GetFileHandler Handler(tag: 597, GET) reader: LR-Handler(tag: 597, GET) +2013-08-27 01:14:04,605+0000 INFO GetFileHandler Handler(tag: 597, GET) sending length: 14799449, 1159158460 +2013-08-27 01:14:04,605+0000 INFO ReadBuffer RB-LR-Handler(tag: 597, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,605+0000 INFO ReadBuffer RB-LR-Handler(tag: 597, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,605+0000 INFO LocalIOProvider LR-Handler(tag: 597, GET) rbuf: RB-LR-Handler(tag: 597, GET) +2013-08-27 01:14:04,612+0000 INFO GetFileHandler Handler(tag: 3278, GET) sending length: 14799449, 2009698607 +2013-08-27 01:14:04,618+0000 INFO ProxyIOProvider Command(tag: 567, GET) resuming +2013-08-27 01:14:04,618+0000 INFO GetFileHandler Handler(tag: 567, GET) resuming +2013-08-27 01:14:04,625+0000 INFO GetFileHandler Handler(tag: 3279, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,625+0000 INFO GetFileHandler Handler(tag: 3279, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,625+0000 INFO GetFileHandler Handler(tag: 3279, GET) -> 598 +2013-08-27 01:14:04,625+0000 INFO GetFileHandler Handler(tag: 598, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,625+0000 INFO GetFileHandler Handler(tag: 598, GET) reader: LR-Handler(tag: 598, GET) +2013-08-27 01:14:04,625+0000 INFO GetFileHandler Handler(tag: 598, GET) sending length: 14799449, 1286734220 +2013-08-27 01:14:04,625+0000 INFO ReadBuffer RB-LR-Handler(tag: 598, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,625+0000 INFO ReadBuffer RB-LR-Handler(tag: 598, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,625+0000 INFO LocalIOProvider LR-Handler(tag: 598, GET) rbuf: RB-LR-Handler(tag: 598, GET) +2013-08-27 01:14:04,639+0000 INFO GetFileHandler Handler(tag: 3279, GET) sending length: 14799449, 487311849 +2013-08-27 01:14:04,646+0000 INFO GetFileHandler Handler(tag: 3280, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,646+0000 INFO GetFileHandler Handler(tag: 3280, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,646+0000 INFO GetFileHandler Handler(tag: 3280, GET) -> 599 +2013-08-27 01:14:04,646+0000 INFO GetFileHandler Handler(tag: 599, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,646+0000 INFO GetFileHandler Handler(tag: 599, GET) reader: LR-Handler(tag: 599, GET) +2013-08-27 01:14:04,646+0000 INFO GetFileHandler Handler(tag: 599, GET) sending length: 14799449, 1617949867 +2013-08-27 01:14:04,647+0000 INFO ReadBuffer RB-LR-Handler(tag: 599, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,647+0000 INFO ReadBuffer RB-LR-Handler(tag: 599, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,647+0000 INFO LocalIOProvider LR-Handler(tag: 599, GET) rbuf: RB-LR-Handler(tag: 599, GET) +2013-08-27 01:14:04,652+0000 INFO GetFileHandler Handler(tag: 3281, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,652+0000 INFO GetFileHandler Handler(tag: 3281, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,652+0000 INFO GetFileHandler Handler(tag: 3281, GET) -> 600 +2013-08-27 01:14:04,652+0000 INFO GetFileHandler Handler(tag: 600, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,652+0000 INFO GetFileHandler Handler(tag: 600, GET) reader: LR-Handler(tag: 600, GET) +2013-08-27 01:14:04,652+0000 INFO GetFileHandler Handler(tag: 600, GET) sending length: 148937, 1786083621 +2013-08-27 01:14:04,652+0000 INFO ReadBuffer RB-LR-Handler(tag: 600, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:04,652+0000 INFO ReadBuffer RB-LR-Handler(tag: 600, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:04,652+0000 INFO LocalIOProvider LR-Handler(tag: 600, GET) rbuf: RB-LR-Handler(tag: 600, GET) +2013-08-27 01:14:04,652+0000 INFO GetFileHandler Handler(tag: 600, GET) unregistering (last) +2013-08-27 01:14:04,652+0000 INFO ReadBuffer RB-LR-Handler(tag: 600, GET) de-allocating 5 buffers +2013-08-27 01:14:04,652+0000 INFO GetFileHandler Handler(tag: 3282, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,652+0000 INFO GetFileHandler Handler(tag: 3282, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,652+0000 INFO GetFileHandler Handler(tag: 3282, GET) -> 601 +2013-08-27 01:14:04,652+0000 INFO GetFileHandler Handler(tag: 601, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,652+0000 INFO GetFileHandler Handler(tag: 601, GET) reader: LR-Handler(tag: 601, GET) +2013-08-27 01:14:04,652+0000 INFO GetFileHandler Handler(tag: 601, GET) sending length: 14799449, 2029537893 +2013-08-27 01:14:04,652+0000 INFO ReadBuffer RB-LR-Handler(tag: 601, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,652+0000 INFO ReadBuffer RB-LR-Handler(tag: 601, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,652+0000 INFO LocalIOProvider LR-Handler(tag: 601, GET) rbuf: RB-LR-Handler(tag: 601, GET) +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 3283, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 3283, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 3283, GET) -> 602 +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 602, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 3284, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 3284, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 602, GET) reader: LR-Handler(tag: 602, GET) +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 3284, GET) -> 603 +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 602, GET) sending length: 14799449, 172249620 +2013-08-27 01:14:04,658+0000 INFO ReadBuffer RB-LR-Handler(tag: 602, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,658+0000 INFO ReadBuffer RB-LR-Handler(tag: 602, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,658+0000 INFO LocalIOProvider LR-Handler(tag: 602, GET) rbuf: RB-LR-Handler(tag: 602, GET) +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 3285, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 603, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 3285, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 603, GET) reader: LR-Handler(tag: 603, GET) +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 3285, GET) -> 604 +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 603, GET) sending length: 2093, 50038282 +2013-08-27 01:14:04,658+0000 INFO ReadBuffer RB-LR-Handler(tag: 603, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:04,658+0000 INFO ReadBuffer RB-LR-Handler(tag: 603, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,658+0000 INFO LocalIOProvider LR-Handler(tag: 603, GET) rbuf: RB-LR-Handler(tag: 603, GET) +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 3286, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 604, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 603, GET) unregistering (last) +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 3286, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 604, GET) reader: LR-Handler(tag: 604, GET) +2013-08-27 01:14:04,658+0000 INFO ReadBuffer RB-LR-Handler(tag: 603, GET) de-allocating 1 buffers +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 3286, GET) -> 605 +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 604, GET) sending length: 2093, 2011685390 +2013-08-27 01:14:04,658+0000 INFO ReadBuffer RB-LR-Handler(tag: 604, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:04,658+0000 INFO ReadBuffer RB-LR-Handler(tag: 604, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,658+0000 INFO LocalIOProvider LR-Handler(tag: 604, GET) rbuf: RB-LR-Handler(tag: 604, GET) +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 604, GET) unregistering (last) +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 3287, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 605, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:04,658+0000 INFO ReadBuffer RB-LR-Handler(tag: 604, GET) de-allocating 1 buffers +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 3287, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 605, GET) reader: LR-Handler(tag: 605, GET) +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 3287, GET) -> 606 +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 605, GET) sending length: 2093, 1375512148 +2013-08-27 01:14:04,658+0000 INFO ReadBuffer RB-LR-Handler(tag: 605, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:04,658+0000 INFO ReadBuffer RB-LR-Handler(tag: 605, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,658+0000 INFO LocalIOProvider LR-Handler(tag: 605, GET) rbuf: RB-LR-Handler(tag: 605, GET) +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 605, GET) unregistering (last) +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 606, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:04,658+0000 INFO ReadBuffer RB-LR-Handler(tag: 605, GET) de-allocating 1 buffers +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 606, GET) reader: LR-Handler(tag: 606, GET) +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 606, GET) sending length: 2093, 1099459077 +2013-08-27 01:14:04,658+0000 INFO ReadBuffer RB-LR-Handler(tag: 606, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:04,658+0000 INFO ReadBuffer RB-LR-Handler(tag: 606, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,658+0000 INFO LocalIOProvider LR-Handler(tag: 606, GET) rbuf: RB-LR-Handler(tag: 606, GET) +2013-08-27 01:14:04,658+0000 INFO GetFileHandler Handler(tag: 606, GET) unregistering (last) +2013-08-27 01:14:04,659+0000 INFO ReadBuffer RB-LR-Handler(tag: 606, GET) de-allocating 1 buffers +2013-08-27 01:14:04,667+0000 INFO GetFileHandler Handler(tag: 3280, GET) sending length: 14799449, 306031668 +2013-08-27 01:14:04,676+0000 INFO GetFileHandler Handler(tag: 3281, GET) sending length: 148937, 1525752316 +2013-08-27 01:14:04,678+0000 INFO GetFileHandler Handler(tag: 3281, GET) unregistering (last) +2013-08-27 01:14:04,678+0000 INFO GetFileHandler Handler(tag: 3282, GET) sending length: 14799449, 1934782336 +2013-08-27 01:14:04,688+0000 INFO GetFileHandler Handler(tag: 3283, GET) sending length: 14799449, 34162781 +2013-08-27 01:14:04,691+0000 INFO GetFileHandler Handler(tag: 3284, GET) sending length: 2093, 1394918157 +2013-08-27 01:14:04,694+0000 INFO GetFileHandler Handler(tag: 3284, GET) unregistering (last) +2013-08-27 01:14:04,694+0000 INFO GetFileHandler Handler(tag: 3285, GET) sending length: 2093, 26890590 +2013-08-27 01:14:04,695+0000 INFO GetFileHandler Handler(tag: 3285, GET) unregistering (last) +2013-08-27 01:14:04,695+0000 INFO GetFileHandler Handler(tag: 3286, GET) sending length: 2093, 1568661094 +2013-08-27 01:14:04,695+0000 INFO GetFileHandler Handler(tag: 3286, GET) unregistering (last) +2013-08-27 01:14:04,695+0000 INFO GetFileHandler Handler(tag: 3287, GET) sending length: 2093, 1398010536 +2013-08-27 01:14:04,696+0000 INFO GetFileHandler Handler(tag: 3287, GET) unregistering (last) +2013-08-27 01:14:04,747+0000 INFO ProxyIOProvider Command(tag: 568, GET) resuming +2013-08-27 01:14:04,748+0000 INFO GetFileHandler Handler(tag: 568, GET) resuming +2013-08-27 01:14:04,790+0000 INFO GetFileHandler Handler(tag: 2752, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,790+0000 INFO GetFileHandler Handler(tag: 2752, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,790+0000 INFO GetFileHandler Handler(tag: 2752, GET) -> 607 +2013-08-27 01:14:04,790+0000 INFO GetFileHandler Handler(tag: 607, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,791+0000 INFO GetFileHandler Handler(tag: 607, GET) reader: LR-Handler(tag: 607, GET) +2013-08-27 01:14:04,791+0000 INFO GetFileHandler Handler(tag: 607, GET) sending length: 148937, 1516729653 +2013-08-27 01:14:04,791+0000 INFO ReadBuffer RB-LR-Handler(tag: 607, GET) will ask for 5 buffers for a size of 148937 +2013-08-27 01:14:04,791+0000 INFO ReadBuffer RB-LR-Handler(tag: 607, GET) actual allocated buffers 5(0 queued) +2013-08-27 01:14:04,791+0000 INFO LocalIOProvider LR-Handler(tag: 607, GET) rbuf: RB-LR-Handler(tag: 607, GET) +2013-08-27 01:14:04,791+0000 INFO GetFileHandler Handler(tag: 607, GET) unregistering (last) +2013-08-27 01:14:04,791+0000 INFO ReadBuffer RB-LR-Handler(tag: 607, GET) de-allocating 5 buffers +2013-08-27 01:14:04,791+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,791+0000 INFO Cpu 0827-1301520-000001:2 jobTerminated +2013-08-27 01:14:04,791+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=2 +2013-08-27 01:14:04,791+0000 INFO RequestHandler Handler(tag: 2753, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,791+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=2 Cpus sleeping: 1 +2013-08-27 01:14:04,791+0000 DEBUG Cpu 0827-1301520-000001:2 sleeping +2013-08-27 01:14:04,791+0000 INFO RequestHandler Handler(tag: 608, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,792+0000 INFO RequestHandler Handler(tag: 609, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,792+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,792+0000 INFO RequestHandler Handler(tag: 2754, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,792+0000 INFO RequestHandler Handler(tag: 610, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,792+0000 INFO GetFileHandler Handler(tag: 2755, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,792+0000 INFO GetFileHandler Handler(tag: 2755, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,792+0000 INFO GetFileHandler Handler(tag: 2755, GET) -> 611 +2013-08-27 01:14:04,792+0000 INFO GetFileHandler Handler(tag: 611, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,792+0000 INFO GetFileHandler Handler(tag: 611, GET) reader: LR-Handler(tag: 611, GET) +2013-08-27 01:14:04,792+0000 INFO GetFileHandler Handler(tag: 611, GET) sending length: 1925, 915935524 +2013-08-27 01:14:04,792+0000 INFO ReadBuffer RB-LR-Handler(tag: 611, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,792+0000 INFO ReadBuffer RB-LR-Handler(tag: 611, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,792+0000 INFO LocalIOProvider LR-Handler(tag: 611, GET) rbuf: RB-LR-Handler(tag: 611, GET) +2013-08-27 01:14:04,792+0000 INFO GetFileHandler Handler(tag: 611, GET) unregistering (last) +2013-08-27 01:14:04,792+0000 INFO ReadBuffer RB-LR-Handler(tag: 611, GET) de-allocating 1 buffers +2013-08-27 01:14:04,793+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:04,793+0000 INFO RequestHandler Handler(tag: 612, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,793+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,793+0000 INFO RequestHandler Handler(tag: 2756, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,793+0000 INFO RequestHandler Handler(tag: 613, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,793+0000 INFO GetFileHandler Handler(tag: 2757, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,793+0000 INFO GetFileHandler Handler(tag: 2757, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,794+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-jcztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,794+0000 INFO GetFileHandler Handler(tag: 2757, GET) -> 614 +2013-08-27 01:14:04,794+0000 INFO GetFileHandler Handler(tag: 614, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,794+0000 INFO GetFileHandler Handler(tag: 614, GET) reader: LR-Handler(tag: 614, GET) +2013-08-27 01:14:04,794+0000 INFO GetFileHandler Handler(tag: 614, GET) sending length: 1925, 364847502 +2013-08-27 01:14:04,794+0000 INFO ReadBuffer RB-LR-Handler(tag: 614, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,794+0000 INFO ReadBuffer RB-LR-Handler(tag: 614, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,794+0000 INFO LocalIOProvider LR-Handler(tag: 614, GET) rbuf: RB-LR-Handler(tag: 614, GET) +2013-08-27 01:14:04,794+0000 INFO GetFileHandler Handler(tag: 614, GET) unregistering (last) +2013-08-27 01:14:04,794+0000 INFO ReadBuffer RB-LR-Handler(tag: 614, GET) de-allocating 1 buffers +2013-08-27 01:14:04,794+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,794+0000 INFO Cpu 0827-1301520-000001:4 jobTerminated +2013-08-27 01:14:04,794+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=4 +2013-08-27 01:14:04,794+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=4 Cpus sleeping: 2 +2013-08-27 01:14:04,794+0000 INFO RequestHandler Handler(tag: 2758, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,794+0000 DEBUG Cpu 0827-1301520-000001:4 sleeping +2013-08-27 01:14:04,794+0000 INFO RequestHandler Handler(tag: 615, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,794+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,794+0000 INFO Cpu 0827-1301520-000001:6 jobTerminated +2013-08-27 01:14:04,794+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=6 +2013-08-27 01:14:04,794+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=6 Cpus sleeping: 3 +2013-08-27 01:14:04,794+0000 INFO RequestHandler Handler(tag: 2759, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,794+0000 DEBUG Cpu 0827-1301520-000001:6 sleeping +2013-08-27 01:14:04,794+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-ldztedel thread=R-42-0-1x2-13-0 host=midway replicationGroup=null +2013-08-27 01:14:04,795+0000 INFO RequestHandler Handler(tag: 616, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,795+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,795+0000 INFO Cpu 0827-1301520-000001:3 jobTerminated +2013-08-27 01:14:04,795+0000 DEBUG swift JOB_START jobid=runampl-ldztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0013.out, outdir/xhat_l20000_0001.0013.out, obj_outdir/obj_out_l0000_0001.0013.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0013.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/l/runampl-ldztedel host=midway +2013-08-27 01:14:04,795+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=3 +2013-08-27 01:14:04,795+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=3 Cpus sleeping: 4 +2013-08-27 01:14:04,795+0000 INFO RequestHandler Handler(tag: 2760, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,795+0000 DEBUG Cpu 0827-1301520-000001:3 sleeping +2013-08-27 01:14:04,795+0000 INFO RequestHandler Handler(tag: 617, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,795+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,795+0000 INFO Cpu 0827-1301520-000001:9 jobTerminated +2013-08-27 01:14:04,795+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=9 +2013-08-27 01:14:04,795+0000 INFO RequestHandler Handler(tag: 2761, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,795+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=9 Cpus sleeping: 5 +2013-08-27 01:14:04,795+0000 DEBUG Cpu 0827-1301520-000001:9 sleeping +2013-08-27 01:14:04,795+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:04,795+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:04,795+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,796+0000 INFO Cpu 0827-1301520-000001:12 jobTerminated +2013-08-27 01:14:04,796+0000 INFO RequestHandler Handler(tag: 618, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,796+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=12 +2013-08-27 01:14:04,796+0000 INFO RequestHandler Handler(tag: 2762, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,796+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,796+0000 INFO RequestHandler Handler(tag: 619, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,796+0000 INFO Cpu 0827-1301520-000001:10 jobTerminated +2013-08-27 01:14:04,796+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=10 +2013-08-27 01:14:04,796+0000 INFO RequestHandler Handler(tag: 2763, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,796+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=12 Cpus sleeping: 6 +2013-08-27 01:14:04,796+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-8cztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,796+0000 DEBUG Cpu 0827-1301520-000001:12 sleeping +2013-08-27 01:14:04,796+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=10 Cpus sleeping: 7 +2013-08-27 01:14:04,796+0000 DEBUG Cpu 0827-1301520-000001:10 sleeping +2013-08-27 01:14:04,796+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:04,796+0000 INFO RequestHandler Handler(tag: 620, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,797+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,797+0000 INFO LateBindingScheduler jobs queued: 3 +2013-08-27 01:14:04,797+0000 INFO Cpu 0827-1301520-000001:8 jobTerminated +2013-08-27 01:14:04,797+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=8 +2013-08-27 01:14:04,797+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=8 Cpus sleeping: 8 +2013-08-27 01:14:04,797+0000 INFO RequestHandler Handler(tag: 2764, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,797+0000 DEBUG Cpu 0827-1301520-000001:8 sleeping +2013-08-27 01:14:04,797+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-ocztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,797+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,797+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-acztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,797+0000 INFO Cpu 0827-1301520-000001:15 jobTerminated +2013-08-27 01:14:04,797+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=15 +2013-08-27 01:14:04,797+0000 INFO RequestHandler Handler(tag: 621, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,798+0000 INFO RequestHandler Handler(tag: 2765, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,798+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-mdztedel thread=R-42-0-1x2-9-0 host=midway replicationGroup=null +2013-08-27 01:14:04,798+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=15 Cpus sleeping: 9 +2013-08-27 01:14:04,798+0000 DEBUG Cpu 0827-1301520-000001:15 sleeping +2013-08-27 01:14:04,798+0000 INFO LateBindingScheduler jobs queued: 2 +2013-08-27 01:14:04,798+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,798+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-gcztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,798+0000 INFO RequestHandler Handler(tag: 622, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,798+0000 DEBUG swift JOB_START jobid=runampl-mdztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0009.out, outdir/xhat_l20000_0001.0009.out, obj_outdir/obj_out_l0000_0001.0009.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0009.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/m/runampl-mdztedel host=midway +2013-08-27 01:14:04,798+0000 INFO Cpu 0827-1301520-000001:11 jobTerminated +2013-08-27 01:14:04,799+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-ndztedel thread=R-42-0-1x2-2-0 host=midway replicationGroup=null +2013-08-27 01:14:04,799+0000 INFO RequestHandler Handler(tag: 623, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,799+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=11 +2013-08-27 01:14:04,799+0000 INFO RequestHandler Handler(tag: 2766, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,799+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=11 Cpus sleeping: 10 +2013-08-27 01:14:04,799+0000 DEBUG Cpu 0827-1301520-000001:11 sleeping +2013-08-27 01:14:04,799+0000 DEBUG swift JOB_START jobid=runampl-ndztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0002.out, outdir/xhat_l20000_0001.0002.out, obj_outdir/obj_out_l0000_0001.0002.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0002.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/n/runampl-ndztedel host=midway +2013-08-27 01:14:04,800+0000 INFO LateBindingScheduler jobs queued: 0 +2013-08-27 01:14:04,800+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-odztedel thread=R-42-0-1x2-11-0 host=midway replicationGroup=null +2013-08-27 01:14:04,800+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,800+0000 INFO Cpu 0827-1301520-000001:13 jobTerminated +2013-08-27 01:14:04,800+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=13 +2013-08-27 01:14:04,800+0000 INFO RequestHandler Handler(tag: 2767, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,800+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-lcztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,800+0000 INFO LateBindingScheduler jobs queued: 2 +2013-08-27 01:14:04,800+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=13 Cpus sleeping: 11 +2013-08-27 01:14:04,801+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-rcztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,801+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-pdztedel thread=R-42-0-1-0x3 host=midway replicationGroup=null +2013-08-27 01:14:04,801+0000 DEBUG Cpu 0827-1301520-000001:13 sleeping +2013-08-27 01:14:04,800+0000 DEBUG swift JOB_START jobid=runampl-odztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0011.out, outdir/xhat_l20000_0001.0011.out, obj_outdir/obj_out_l0000_0001.0011.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0011.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/o/runampl-odztedel host=midway +2013-08-27 01:14:04,801+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,801+0000 INFO Cpu 0827-1301520-000001:7 jobTerminated +2013-08-27 01:14:04,801+0000 DEBUG swift JOB_START jobid=runampl-pdztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0000.out, outdir/xhat_l20000_0000.0000.out, obj_outdir/obj_out_l0000_0000.0000.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0000.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/p/runampl-pdztedel host=midway +2013-08-27 01:14:04,801+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=7 +2013-08-27 01:14:04,801+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=7 Cpus sleeping: 12 +2013-08-27 01:14:04,801+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-7cztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,801+0000 DEBUG Cpu 0827-1301520-000001:7 sleeping +2013-08-27 01:14:04,801+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:04,801+0000 INFO RequestHandler Handler(tag: 2768, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,801+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:04,801+0000 INFO RequestHandler Handler(tag: 624, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,802+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:04,802+0000 INFO Cpu 0827-1301520-000001:14 jobTerminated +2013-08-27 01:14:04,802+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=14 +2013-08-27 01:14:04,803+0000 INFO RequestHandler Handler(tag: 2769, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,802+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-dcztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,803+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-qdztedel thread=R-42-0x2 host=midway replicationGroup=null +2013-08-27 01:14:04,803+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-ncztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,803+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=14 Cpus sleeping: 13 +2013-08-27 01:14:04,803+0000 DEBUG Cpu 0827-1301520-000001:14 sleeping +2013-08-27 01:14:04,803+0000 INFO RequestHandler Handler(tag: 625, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,803+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-rdztedel thread=R-42-0-1x2-16-0 host=midway replicationGroup=null +2013-08-27 01:14:04,803+0000 DEBUG swift JOB_START jobid=runampl-qdztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat10000.out, outdir/xhat20000.out, obj_outdir/obj_ampl0000.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res0000.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/q/runampl-qdztedel host=midway +2013-08-27 01:14:04,803+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-sdztedel thread=R-42-0-1-0-8-0 host=midway replicationGroup=null +2013-08-27 01:14:04,804+0000 INFO LateBindingScheduler jobs queued: 0 +2013-08-27 01:14:04,804+0000 DEBUG swift JOB_START jobid=runampl-sdztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0008.out, outdir/xhat_l20000_0000.0008.out, obj_outdir/obj_out_l0000_0000.0008.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0008.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/s/runampl-sdztedel host=midway +2013-08-27 01:14:04,804+0000 INFO RequestHandler Handler(tag: 626, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,804+0000 DEBUG swift JOB_START jobid=runampl-rdztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0016.out, outdir/xhat_l20000_0001.0016.out, obj_outdir/obj_out_l0000_0001.0016.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0016.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/r/runampl-rdztedel host=midway +2013-08-27 01:14:04,804+0000 INFO LateBindingScheduler jobs queued: 4 +2013-08-27 01:14:04,804+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-qcztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,805+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-udztedel thread=R-42-0-1x2-0x2 host=midway replicationGroup=null +2013-08-27 01:14:04,805+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-vdztedel thread=R-42-0-1-0-4-0 host=midway replicationGroup=null +2013-08-27 01:14:04,805+0000 DEBUG swift JOB_START jobid=runampl-udztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0000.out, outdir/xhat_l20000_0001.0000.out, obj_outdir/obj_out_l0000_0001.0000.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0000.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/u/runampl-udztedel host=midway +2013-08-27 01:14:04,805+0000 DEBUG swift JOB_START jobid=runampl-vdztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0004.out, outdir/xhat_l20000_0000.0004.out, obj_outdir/obj_out_l0000_0000.0004.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0004.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/v/runampl-vdztedel host=midway +2013-08-27 01:14:04,807+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-9cztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,807+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-tdztedel thread=R-42-0-1-0-10-0 host=midway replicationGroup=null +2013-08-27 01:14:04,807+0000 DEBUG swift JOB_START jobid=runampl-tdztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0010.out, outdir/xhat_l20000_0000.0010.out, obj_outdir/obj_out_l0000_0000.0010.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0010.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/t/runampl-tdztedel host=midway +2013-08-27 01:14:04,807+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:04,809+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-xdztedel thread=R-42-0-1-0-1-0 host=midway replicationGroup=null +2013-08-27 01:14:04,809+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-ecztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:04,809+0000 DEBUG swift JOB_START jobid=runampl-xdztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0000.0001.out, outdir/xhat_l20000_0000.0001.out, obj_outdir/obj_out_l0000_0000.0001.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0000.0001.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/x/runampl-xdztedel host=midway +2013-08-27 01:14:04,809+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-ydztedel thread=R-42-0-1x2-7-0 host=midway replicationGroup=null +2013-08-27 01:14:04,810+0000 DEBUG swift JOB_START jobid=runampl-ydztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0007.out, outdir/xhat_l20000_0001.0007.out, obj_outdir/obj_out_l0000_0001.0007.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0007.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/y/runampl-ydztedel host=midway +2013-08-27 01:14:04,811+0000 INFO GetFileHandler Handler(tag: 2752, GET) sending length: 148937, 1043552805 +2013-08-27 01:14:04,811+0000 INFO GetFileHandler Handler(tag: 2752, GET) unregistering (last) +2013-08-27 01:14:04,812+0000 INFO GetFileHandler Handler(tag: 2755, GET) sending length: 1925, 29141635 +2013-08-27 01:14:04,813+0000 INFO GetFileHandler Handler(tag: 2755, GET) unregistering (last) +2013-08-27 01:14:04,814+0000 INFO GetFileHandler Handler(tag: 2770, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:04,814+0000 INFO GetFileHandler Handler(tag: 2770, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:04,814+0000 INFO GetFileHandler Handler(tag: 2770, GET) -> 627 +2013-08-27 01:14:04,814+0000 INFO GetFileHandler Handler(tag: 627, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:04,814+0000 INFO GetFileHandler Handler(tag: 627, GET) reader: LR-Handler(tag: 627, GET) +2013-08-27 01:14:04,814+0000 INFO GetFileHandler Handler(tag: 627, GET) sending length: 543, 1583157172 +2013-08-27 01:14:04,814+0000 INFO ReadBuffer RB-LR-Handler(tag: 627, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:04,814+0000 INFO ReadBuffer RB-LR-Handler(tag: 627, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,814+0000 INFO LocalIOProvider LR-Handler(tag: 627, GET) rbuf: RB-LR-Handler(tag: 627, GET) +2013-08-27 01:14:04,814+0000 INFO GetFileHandler Handler(tag: 2771, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,814+0000 INFO GetFileHandler Handler(tag: 627, GET) unregistering (last) +2013-08-27 01:14:04,814+0000 INFO ReadBuffer RB-LR-Handler(tag: 627, GET) de-allocating 1 buffers +2013-08-27 01:14:04,814+0000 INFO GetFileHandler Handler(tag: 2771, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,814+0000 INFO GetFileHandler Handler(tag: 2771, GET) -> 628 +2013-08-27 01:14:04,814+0000 INFO GetFileHandler Handler(tag: 628, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,814+0000 INFO GetFileHandler Handler(tag: 628, GET) reader: LR-Handler(tag: 628, GET) +2013-08-27 01:14:04,814+0000 INFO GetFileHandler Handler(tag: 628, GET) sending length: 14799449, 1477190004 +2013-08-27 01:14:04,814+0000 INFO ReadBuffer RB-LR-Handler(tag: 628, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,814+0000 INFO ReadBuffer RB-LR-Handler(tag: 628, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,814+0000 INFO LocalIOProvider LR-Handler(tag: 628, GET) rbuf: RB-LR-Handler(tag: 628, GET) +2013-08-27 01:14:04,815+0000 INFO GetFileHandler Handler(tag: 2757, GET) sending length: 1925, 1703716661 +2013-08-27 01:14:04,816+0000 INFO GetFileHandler Handler(tag: 2757, GET) unregistering (last) +2013-08-27 01:14:04,816+0000 INFO GetFileHandler Handler(tag: 2772, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,816+0000 INFO GetFileHandler Handler(tag: 2772, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,816+0000 INFO GetFileHandler Handler(tag: 2772, GET) -> 629 +2013-08-27 01:14:04,816+0000 INFO GetFileHandler Handler(tag: 629, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,816+0000 INFO GetFileHandler Handler(tag: 629, GET) reader: LR-Handler(tag: 629, GET) +2013-08-27 01:14:04,816+0000 INFO GetFileHandler Handler(tag: 629, GET) sending length: 14799449, 1211075981 +2013-08-27 01:14:04,816+0000 INFO ReadBuffer RB-LR-Handler(tag: 629, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,816+0000 INFO ReadBuffer RB-LR-Handler(tag: 629, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,816+0000 INFO LocalIOProvider LR-Handler(tag: 629, GET) rbuf: RB-LR-Handler(tag: 629, GET) +2013-08-27 01:14:04,820+0000 INFO RequestHandler Handler(tag: 53, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,826+0000 INFO RequestHandler Handler(tag: 55, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,826+0000 INFO RequestHandler Handler(tag: 56, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,827+0000 INFO RequestHandler Handler(tag: 57, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,827+0000 INFO RequestHandler Handler(tag: 54, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,827+0000 INFO ProxyIOProvider Command(tag: 591, GET) suspending +2013-08-27 01:14:04,827+0000 INFO GetFileHandler Handler(tag: 591, GET) suspending +2013-08-27 01:14:04,828+0000 INFO RequestHandler Handler(tag: 58, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,830+0000 INFO RequestHandler Handler(tag: 59, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,830+0000 INFO RequestHandler Handler(tag: 60, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,831+0000 INFO RequestHandler Handler(tag: 61, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,831+0000 INFO RequestHandler Handler(tag: 62, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,832+0000 INFO RequestHandler Handler(tag: 63, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,832+0000 INFO RequestHandler Handler(tag: 64, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,833+0000 INFO RequestHandler Handler(tag: 65, SUBMITJOB) unregistering (send) +2013-08-27 01:14:04,834+0000 INFO GetFileHandler Handler(tag: 2770, GET) sending length: 543, 805363256 +2013-08-27 01:14:04,834+0000 INFO GetFileHandler Handler(tag: 2770, GET) unregistering (last) +2013-08-27 01:14:04,835+0000 INFO GetFileHandler Handler(tag: 2771, GET) sending length: 14799449, 1146586674 +2013-08-27 01:14:04,835+0000 INFO GetFileHandler Handler(tag: 2773, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:04,835+0000 INFO GetFileHandler Handler(tag: 2773, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:04,835+0000 INFO GetFileHandler Handler(tag: 2773, GET) -> 630 +2013-08-27 01:14:04,835+0000 INFO GetFileHandler Handler(tag: 630, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run +2013-08-27 01:14:04,835+0000 INFO GetFileHandler Handler(tag: 630, GET) reader: LR-Handler(tag: 630, GET) +2013-08-27 01:14:04,835+0000 INFO GetFileHandler Handler(tag: 630, GET) sending length: 2093, 498863731 +2013-08-27 01:14:04,835+0000 INFO ReadBuffer RB-LR-Handler(tag: 630, GET) will ask for 1 buffers for a size of 2093 +2013-08-27 01:14:04,835+0000 INFO ReadBuffer RB-LR-Handler(tag: 630, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,835+0000 INFO LocalIOProvider LR-Handler(tag: 630, GET) rbuf: RB-LR-Handler(tag: 630, GET) +2013-08-27 01:14:04,835+0000 INFO GetFileHandler Handler(tag: 630, GET) unregistering (last) +2013-08-27 01:14:04,835+0000 INFO ReadBuffer RB-LR-Handler(tag: 630, GET) de-allocating 1 buffers +2013-08-27 01:14:04,838+0000 INFO GetFileHandler Handler(tag: 2772, GET) sending length: 14799449, 1349382820 +2013-08-27 01:14:04,843+0000 INFO ProxyIOProvider Command(tag: 583, GET) resuming +2013-08-27 01:14:04,843+0000 INFO GetFileHandler Handler(tag: 583, GET) resuming +2013-08-27 01:14:04,853+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=8 Cpus sleeping: 1 +2013-08-27 01:14:04,853+0000 INFO Cpu 0827-1301520-000001:8 (quality: 0.5) submitting urn:1377566032233-1377566032285-1377566032286: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0013.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0013.out|outdir/xhat_l10000_000 1.0013.out|outdir/xhat_l20000_0001.0013.out|Results/ampl_res_l0000_0001.0013.out|outdir/out_l0000_0001.0013.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0013.out outdir/xhat_l20000_0001.0013.out obj_outdir/obj_out_l0000_0001.0013.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0013.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,853+0000 INFO RequestHandler Handler(tag: 631, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,853+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=13 Cpus sleeping: 1 +2013-08-27 01:14:04,853+0000 INFO Cpu 0827-1301520-000001:13 (quality: 0.5) submitting urn:1377566032256-1377566032288-1377566032289: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0011.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0011.out|outdir/xhat_l10000_00 01.0011.out|outdir/xhat_l20000_0001.0011.out|Results/ampl_res_l0000_0001.0011.out|outdir/out_l0000_0001.0011.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0011.out outdir/xhat_l20000_0001.0011.out obj_outdir/obj_out_l0000_0001.0011.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0011.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,854+0000 INFO RequestHandler Handler(tag: 632, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,854+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=2 Cpus sleeping: 1 +2013-08-27 01:14:04,854+0000 INFO Cpu 0827-1301520-000001:2 (quality: 0.5) submitting urn:1377566032259-1377566032291-1377566032292: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0002.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0002.out|outdir/xhat_l10000_000 1.0002.out|outdir/xhat_l20000_0001.0002.out|Results/ampl_res_l0000_0001.0002.out|outdir/out_l0000_0001.0002.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0002.out outdir/xhat_l20000_0001.0002.out obj_outdir/obj_out_l0000_0001.0002.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0002.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,854+0000 INFO RequestHandler Handler(tag: 633, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,854+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=3 Cpus sleeping: 1 +2013-08-27 01:14:04,854+0000 INFO Cpu 0827-1301520-000001:3 (quality: 0.5) submitting urn:1377566032262-1377566032294-1377566032295: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0000.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0000.out|outdir/xhat_l10000_000 0.0000.out|outdir/xhat_l20000_0000.0000.out|Results/ampl_res_l0000_0000.0000.out|outdir/out_l0000_0000.0000.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0000.out outdir/xhat_l20000_0000.0000.out obj_outdir/obj_out_l0000_0000.0000.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0000.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,854+0000 INFO RequestHandler Handler(tag: 634, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,854+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=6 Cpus sleeping: 1 +2013-08-27 01:14:04,854+0000 INFO Cpu 0827-1301520-000001:6 (quality: 0.5) submitting urn:1377566032251-1377566032297-1377566032298: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0009.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0009.out|outdir/xhat_l10000_000 1.0009.out|outdir/xhat_l20000_0001.0009.out|Results/ampl_res_l0000_0001.0009.out|outdir/out_l0000_0001.0009.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0009.out outdir/xhat_l20000_0001.0009.out obj_outdir/obj_out_l0000_0001.0009.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0009.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,854+0000 INFO RequestHandler Handler(tag: 635, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,855+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=11 Cpus sleeping: 1 +2013-08-27 01:14:04,855+0000 INFO Cpu 0827-1301520-000001:11 (quality: 0.5) submitting urn:1377566032264-1377566032300-1377566032301: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/ampl0000.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_ampl0000.out|outdir/xhat10000.out|outdir/xhat20000.out|R esults/ampl_res0000.out|outdir/ampl0000.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat10000.out outdir/xhat20000.out obj_outdir/obj_ampl0000.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res0000.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,855+0000 INFO RequestHandler Handler(tag: 636, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,855+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=10 Cpus sleeping: 1 +2013-08-27 01:14:04,855+0000 INFO Cpu 0827-1301520-000001:10 (quality: 0.5) submitting urn:1377566032267-1377566032303-1377566032304: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0000.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0000.out|outdir/xhat_l10000_00 01.0000.out|outdir/xhat_l20000_0001.0000.out|Results/ampl_res_l0000_0001.0000.out|outdir/out_l0000_0001.0000.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0000.out outdir/xhat_l20000_0001.0000.out obj_outdir/obj_out_l0000_0001.0000.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0000.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,855+0000 INFO RequestHandler Handler(tag: 637, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,855+0000 INFO RequestHandler Handler(tag: 638, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,855+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,855+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=7 Cpus sleeping: 1 +2013-08-27 01:14:04,855+0000 INFO RequestHandler Handler(tag: 2774, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,855+0000 INFO RequestHandler Handler(tag: 639, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,855+0000 INFO Cpu 0827-1301520-000001:7 (quality: 0.5) submitting urn:1377566032268-1377566032306-1377566032307: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0004.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0004.out|outdir/xhat_l10000_000 0.0004.out|outdir/xhat_l20000_0000.0004.out|Results/ampl_res_l0000_0000.0004.out|outdir/out_l0000_0000.0004.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0004.out outdir/xhat_l20000_0000.0004.out obj_outdir/obj_out_l0000_0000.0004.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0004.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,855+0000 INFO GetFileHandler Handler(tag: 2775, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,855+0000 INFO RequestHandler Handler(tag: 640, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,855+0000 INFO GetFileHandler Handler(tag: 2775, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,855+0000 INFO GetFileHandler Handler(tag: 2775, GET) -> 641 +2013-08-27 01:14:04,855+0000 INFO GetFileHandler Handler(tag: 641, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,855+0000 INFO GetFileHandler Handler(tag: 641, GET) reader: LR-Handler(tag: 641, GET) +2013-08-27 01:14:04,855+0000 INFO GetFileHandler Handler(tag: 641, GET) sending length: 1925, 652953127 +2013-08-27 01:14:04,855+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=9 Cpus sleeping: 1 +2013-08-27 01:14:04,855+0000 INFO ReadBuffer RB-LR-Handler(tag: 641, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,855+0000 INFO ReadBuffer RB-LR-Handler(tag: 641, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,855+0000 INFO LocalIOProvider LR-Handler(tag: 641, GET) rbuf: RB-LR-Handler(tag: 641, GET) +2013-08-27 01:14:04,855+0000 INFO GetFileHandler Handler(tag: 641, GET) unregistering (last) +2013-08-27 01:14:04,855+0000 INFO Cpu 0827-1301520-000001:9 (quality: 0.5) submitting urn:1377566032275-1377566032309-1377566032310: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0016.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0016.out|outdir/xhat_l10000_000 1.0016.out|outdir/xhat_l20000_0001.0016.out|Results/ampl_res_l0000_0001.0016.out|outdir/out_l0000_0001.0016.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0016.out outdir/xhat_l20000_0001.0016.out obj_outdir/obj_out_l0000_0001.0016.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0016.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,855+0000 INFO ReadBuffer RB-LR-Handler(tag: 641, GET) de-allocating 1 buffers +2013-08-27 01:14:04,856+0000 INFO RequestHandler Handler(tag: 642, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,856+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=14 Cpus sleeping: 1 +2013-08-27 01:14:04,856+0000 INFO Cpu 0827-1301520-000001:14 (quality: 0.5) submitting urn:1377566032276-1377566032312-1377566032313: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0008.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0008.out|outdir/xhat_l10000_00 00.0008.out|outdir/xhat_l20000_0000.0008.out|Results/ampl_res_l0000_0000.0008.out|outdir/out_l0000_0000.0008.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0008.out outdir/xhat_l20000_0000.0008.out obj_outdir/obj_out_l0000_0000.0008.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0008.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,856+0000 INFO RequestHandler Handler(tag: 643, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,856+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=12 Cpus sleeping: 1 +2013-08-27 01:14:04,856+0000 INFO Cpu 0827-1301520-000001:12 (quality: 0.5) submitting urn:1377566032279-1377566032315-1377566032316: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0010.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0010.out|outdir/xhat_l10000_00 00.0010.out|outdir/xhat_l20000_0000.0010.out|Results/ampl_res_l0000_0000.0010.out|outdir/out_l0000_0000.0010.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0010.out outdir/xhat_l20000_0000.0010.out obj_outdir/obj_out_l0000_0000.0010.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0010.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,856+0000 INFO RequestHandler Handler(tag: 644, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,856+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=4 Cpus sleeping: 1 +2013-08-27 01:14:04,856+0000 INFO Cpu 0827-1301520-000001:4 (quality: 0.5) submitting urn:1377566032281-1377566032318-1377566032319: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0000.0001.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0000.0001.out|outdir/xhat_l10000_000 0.0001.out|outdir/xhat_l20000_0000.0001.out|Results/ampl_res_l0000_0000.0001.out|outdir/out_l0000_0000.0001.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0000.0001.out outdir/xhat_l20000_0000.0001.out obj_outdir/obj_out_l0000_0000.0001.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0000.0001.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,856+0000 INFO RequestHandler Handler(tag: 645, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,856+0000 INFO RequestHandler Handler(tag: 646, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,856+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=15 Cpus sleeping: 1 +2013-08-27 01:14:04,857+0000 INFO Cpu 0827-1301520-000001:15 (quality: 0.5) submitting urn:1377566032283-1377566032321-1377566032322: /bin/bash _swiftwrap.staging -e /home/maheshwari/powergridapps/bin/run_ampl.py -out outdir/out_l0000_0001.0007.out -err stderr.txt -i -d obj_outdir|outdir|Results -if __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc|__root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat -of obj_outdir/obj_out_l0000_0001.0007.out|outdir/xhat_l10000_00 01.0007.out|outdir/xhat_l20000_0001.0007.out|Results/ampl_res_l0000_0001.0007.out|outdir/out_l0000_0001.0007.out -k -cdmfile -status provider -a 10 0 __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run outdir/xhat_l10000_0001.0007.out outdir/xhat_l20000_0001.0007.out obj_outdir/obj_out_l0000_0001.0007.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc Results/ampl_res_l0000_0001.0007.out __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat +2013-08-27 01:14:04,857+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,857+0000 INFO RequestHandler Handler(tag: 2776, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,857+0000 INFO RequestHandler Handler(tag: 647, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,857+0000 INFO RequestHandler Handler(tag: 648, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,857+0000 INFO GetFileHandler Handler(tag: 2777, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,857+0000 INFO GetFileHandler Handler(tag: 2777, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,857+0000 INFO GetFileHandler Handler(tag: 2777, GET) -> 649 +2013-08-27 01:14:04,857+0000 INFO GetFileHandler Handler(tag: 649, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,857+0000 INFO GetFileHandler Handler(tag: 649, GET) reader: LR-Handler(tag: 649, GET) +2013-08-27 01:14:04,857+0000 INFO GetFileHandler Handler(tag: 649, GET) sending length: 1925, 1451474685 +2013-08-27 01:14:04,857+0000 INFO ReadBuffer RB-LR-Handler(tag: 649, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,857+0000 INFO ReadBuffer RB-LR-Handler(tag: 649, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,857+0000 INFO LocalIOProvider LR-Handler(tag: 649, GET) rbuf: RB-LR-Handler(tag: 649, GET) +2013-08-27 01:14:04,857+0000 INFO GetFileHandler Handler(tag: 649, GET) unregistering (last) +2013-08-27 01:14:04,857+0000 INFO ReadBuffer RB-LR-Handler(tag: 649, GET) de-allocating 1 buffers +2013-08-27 01:14:04,858+0000 INFO RequestHandler Handler(tag: 650, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,858+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,858+0000 INFO RequestHandler Handler(tag: 2778, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,858+0000 INFO RequestHandler Handler(tag: 651, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,858+0000 INFO GetFileHandler Handler(tag: 2779, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,858+0000 INFO GetFileHandler Handler(tag: 2779, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,858+0000 INFO GetFileHandler Handler(tag: 2779, GET) -> 652 +2013-08-27 01:14:04,858+0000 INFO GetFileHandler Handler(tag: 652, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,858+0000 INFO GetFileHandler Handler(tag: 652, GET) reader: LR-Handler(tag: 652, GET) +2013-08-27 01:14:04,858+0000 INFO GetFileHandler Handler(tag: 652, GET) sending length: 1925, 37278946 +2013-08-27 01:14:04,858+0000 INFO ReadBuffer RB-LR-Handler(tag: 652, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,858+0000 INFO ReadBuffer RB-LR-Handler(tag: 652, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,858+0000 INFO LocalIOProvider LR-Handler(tag: 652, GET) rbuf: RB-LR-Handler(tag: 652, GET) +2013-08-27 01:14:04,858+0000 INFO GetFileHandler Handler(tag: 652, GET) unregistering (last) +2013-08-27 01:14:04,858+0000 INFO ReadBuffer RB-LR-Handler(tag: 652, GET) de-allocating 1 buffers +2013-08-27 01:14:04,858+0000 INFO GetFileHandler Handler(tag: 2773, GET) sending length: 2093, 217214824 +2013-08-27 01:14:04,858+0000 INFO GetFileHandler Handler(tag: 2773, GET) unregistering (last) +2013-08-27 01:14:04,859+0000 INFO RequestHandler Handler(tag: 653, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,859+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,859+0000 INFO RequestHandler Handler(tag: 2780, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,859+0000 INFO RequestHandler Handler(tag: 654, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,859+0000 INFO GetFileHandler Handler(tag: 2781, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,859+0000 INFO GetFileHandler Handler(tag: 2781, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,860+0000 INFO GetFileHandler Handler(tag: 2781, GET) -> 655 +2013-08-27 01:14:04,860+0000 INFO GetFileHandler Handler(tag: 655, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,860+0000 INFO GetFileHandler Handler(tag: 655, GET) reader: LR-Handler(tag: 655, GET) +2013-08-27 01:14:04,860+0000 INFO GetFileHandler Handler(tag: 655, GET) sending length: 1925, 1519238493 +2013-08-27 01:14:04,860+0000 INFO ReadBuffer RB-LR-Handler(tag: 655, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,860+0000 INFO ReadBuffer RB-LR-Handler(tag: 655, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,860+0000 INFO LocalIOProvider LR-Handler(tag: 655, GET) rbuf: RB-LR-Handler(tag: 655, GET) +2013-08-27 01:14:04,860+0000 INFO GetFileHandler Handler(tag: 655, GET) unregistering (last) +2013-08-27 01:14:04,860+0000 INFO ReadBuffer RB-LR-Handler(tag: 655, GET) de-allocating 1 buffers +2013-08-27 01:14:04,861+0000 INFO RequestHandler Handler(tag: 656, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,861+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,861+0000 INFO RequestHandler Handler(tag: 657, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,861+0000 INFO RequestHandler Handler(tag: 2782, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,861+0000 INFO GetFileHandler Handler(tag: 2783, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,861+0000 INFO GetFileHandler Handler(tag: 2783, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,861+0000 INFO GetFileHandler Handler(tag: 2783, GET) -> 658 +2013-08-27 01:14:04,861+0000 INFO GetFileHandler Handler(tag: 658, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,861+0000 INFO GetFileHandler Handler(tag: 658, GET) reader: LR-Handler(tag: 658, GET) +2013-08-27 01:14:04,861+0000 INFO GetFileHandler Handler(tag: 658, GET) sending length: 1925, 1807020015 +2013-08-27 01:14:04,861+0000 INFO ReadBuffer RB-LR-Handler(tag: 658, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,861+0000 INFO ReadBuffer RB-LR-Handler(tag: 658, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,861+0000 INFO LocalIOProvider LR-Handler(tag: 658, GET) rbuf: RB-LR-Handler(tag: 658, GET) +2013-08-27 01:14:04,861+0000 INFO GetFileHandler Handler(tag: 658, GET) unregistering (last) +2013-08-27 01:14:04,861+0000 INFO ReadBuffer RB-LR-Handler(tag: 658, GET) de-allocating 1 buffers +2013-08-27 01:14:04,862+0000 INFO RequestHandler Handler(tag: 659, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,862+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,862+0000 INFO RequestHandler Handler(tag: 2784, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,862+0000 INFO RequestHandler Handler(tag: 660, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,862+0000 INFO GetFileHandler Handler(tag: 2785, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,862+0000 INFO GetFileHandler Handler(tag: 2785, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,862+0000 INFO GetFileHandler Handler(tag: 2785, GET) -> 661 +2013-08-27 01:14:04,862+0000 INFO GetFileHandler Handler(tag: 661, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,862+0000 INFO GetFileHandler Handler(tag: 661, GET) reader: LR-Handler(tag: 661, GET) +2013-08-27 01:14:04,862+0000 INFO GetFileHandler Handler(tag: 661, GET) sending length: 1925, 1389311915 +2013-08-27 01:14:04,862+0000 INFO ReadBuffer RB-LR-Handler(tag: 661, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,862+0000 INFO ReadBuffer RB-LR-Handler(tag: 661, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,862+0000 INFO LocalIOProvider LR-Handler(tag: 661, GET) rbuf: RB-LR-Handler(tag: 661, GET) +2013-08-27 01:14:04,862+0000 INFO GetFileHandler Handler(tag: 661, GET) unregistering (last) +2013-08-27 01:14:04,862+0000 INFO ReadBuffer RB-LR-Handler(tag: 661, GET) de-allocating 1 buffers +2013-08-27 01:14:04,863+0000 INFO RequestHandler Handler(tag: 662, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,864+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,864+0000 INFO RequestHandler Handler(tag: 2786, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,864+0000 INFO RequestHandler Handler(tag: 663, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,864+0000 INFO GetFileHandler Handler(tag: 2787, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,864+0000 INFO GetFileHandler Handler(tag: 2787, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,864+0000 INFO GetFileHandler Handler(tag: 2787, GET) -> 664 +2013-08-27 01:14:04,864+0000 INFO GetFileHandler Handler(tag: 664, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,864+0000 INFO GetFileHandler Handler(tag: 664, GET) reader: LR-Handler(tag: 664, GET) +2013-08-27 01:14:04,864+0000 INFO GetFileHandler Handler(tag: 664, GET) sending length: 1925, 349983176 +2013-08-27 01:14:04,864+0000 INFO ReadBuffer RB-LR-Handler(tag: 664, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,864+0000 INFO ReadBuffer RB-LR-Handler(tag: 664, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,864+0000 INFO LocalIOProvider LR-Handler(tag: 664, GET) rbuf: RB-LR-Handler(tag: 664, GET) +2013-08-27 01:14:04,864+0000 INFO GetFileHandler Handler(tag: 664, GET) unregistering (last) +2013-08-27 01:14:04,864+0000 INFO ReadBuffer RB-LR-Handler(tag: 664, GET) de-allocating 1 buffers +2013-08-27 01:14:04,865+0000 INFO RequestHandler Handler(tag: 665, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,865+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,865+0000 INFO RequestHandler Handler(tag: 2788, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,865+0000 INFO RequestHandler Handler(tag: 666, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,865+0000 INFO GetFileHandler Handler(tag: 2789, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,865+0000 INFO GetFileHandler Handler(tag: 2789, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,865+0000 INFO GetFileHandler Handler(tag: 2789, GET) -> 667 +2013-08-27 01:14:04,865+0000 INFO GetFileHandler Handler(tag: 667, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,865+0000 INFO GetFileHandler Handler(tag: 667, GET) reader: LR-Handler(tag: 667, GET) +2013-08-27 01:14:04,865+0000 INFO GetFileHandler Handler(tag: 667, GET) sending length: 1925, 997121798 +2013-08-27 01:14:04,865+0000 INFO ReadBuffer RB-LR-Handler(tag: 667, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,865+0000 INFO ReadBuffer RB-LR-Handler(tag: 667, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,865+0000 INFO LocalIOProvider LR-Handler(tag: 667, GET) rbuf: RB-LR-Handler(tag: 667, GET) +2013-08-27 01:14:04,865+0000 INFO GetFileHandler Handler(tag: 667, GET) unregistering (last) +2013-08-27 01:14:04,865+0000 INFO ReadBuffer RB-LR-Handler(tag: 667, GET) de-allocating 1 buffers +2013-08-27 01:14:04,866+0000 INFO RequestHandler Handler(tag: 668, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,866+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,866+0000 INFO RequestHandler Handler(tag: 2790, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,866+0000 INFO RequestHandler Handler(tag: 669, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,866+0000 INFO GetFileHandler Handler(tag: 2791, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,866+0000 INFO GetFileHandler Handler(tag: 2791, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,866+0000 INFO GetFileHandler Handler(tag: 2791, GET) -> 670 +2013-08-27 01:14:04,866+0000 INFO GetFileHandler Handler(tag: 670, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,866+0000 INFO GetFileHandler Handler(tag: 670, GET) reader: LR-Handler(tag: 670, GET) +2013-08-27 01:14:04,866+0000 INFO GetFileHandler Handler(tag: 670, GET) sending length: 1925, 956662815 +2013-08-27 01:14:04,866+0000 INFO ReadBuffer RB-LR-Handler(tag: 670, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,866+0000 INFO ReadBuffer RB-LR-Handler(tag: 670, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,866+0000 INFO LocalIOProvider LR-Handler(tag: 670, GET) rbuf: RB-LR-Handler(tag: 670, GET) +2013-08-27 01:14:04,866+0000 INFO GetFileHandler Handler(tag: 670, GET) unregistering (last) +2013-08-27 01:14:04,866+0000 INFO ReadBuffer RB-LR-Handler(tag: 670, GET) de-allocating 1 buffers +2013-08-27 01:14:04,867+0000 INFO RequestHandler Handler(tag: 671, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,867+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,867+0000 INFO RequestHandler Handler(tag: 672, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,867+0000 INFO RequestHandler Handler(tag: 2792, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,867+0000 INFO GetFileHandler Handler(tag: 2793, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,867+0000 INFO GetFileHandler Handler(tag: 2793, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,867+0000 INFO GetFileHandler Handler(tag: 2793, GET) -> 673 +2013-08-27 01:14:04,867+0000 INFO GetFileHandler Handler(tag: 673, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,867+0000 INFO GetFileHandler Handler(tag: 673, GET) reader: LR-Handler(tag: 673, GET) +2013-08-27 01:14:04,867+0000 INFO GetFileHandler Handler(tag: 673, GET) sending length: 1925, 1202767937 +2013-08-27 01:14:04,867+0000 INFO ReadBuffer RB-LR-Handler(tag: 673, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,867+0000 INFO ReadBuffer RB-LR-Handler(tag: 673, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,867+0000 INFO LocalIOProvider LR-Handler(tag: 673, GET) rbuf: RB-LR-Handler(tag: 673, GET) +2013-08-27 01:14:04,867+0000 INFO GetFileHandler Handler(tag: 673, GET) unregistering (last) +2013-08-27 01:14:04,867+0000 INFO ReadBuffer RB-LR-Handler(tag: 673, GET) de-allocating 1 buffers +2013-08-27 01:14:04,868+0000 INFO RequestHandler Handler(tag: 674, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,868+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,868+0000 INFO RequestHandler Handler(tag: 2794, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,868+0000 INFO RequestHandler Handler(tag: 675, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,868+0000 INFO GetFileHandler Handler(tag: 2795, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,868+0000 INFO GetFileHandler Handler(tag: 2795, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,868+0000 INFO GetFileHandler Handler(tag: 2795, GET) -> 676 +2013-08-27 01:14:04,868+0000 INFO GetFileHandler Handler(tag: 676, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,868+0000 INFO GetFileHandler Handler(tag: 676, GET) reader: LR-Handler(tag: 676, GET) +2013-08-27 01:14:04,868+0000 INFO GetFileHandler Handler(tag: 676, GET) sending length: 1925, 1208475863 +2013-08-27 01:14:04,868+0000 INFO ReadBuffer RB-LR-Handler(tag: 676, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,868+0000 INFO ReadBuffer RB-LR-Handler(tag: 676, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,868+0000 INFO LocalIOProvider LR-Handler(tag: 676, GET) rbuf: RB-LR-Handler(tag: 676, GET) +2013-08-27 01:14:04,868+0000 INFO GetFileHandler Handler(tag: 676, GET) unregistering (last) +2013-08-27 01:14:04,868+0000 INFO ReadBuffer RB-LR-Handler(tag: 676, GET) de-allocating 1 buffers +2013-08-27 01:14:04,869+0000 INFO RequestHandler Handler(tag: 677, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,869+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,869+0000 INFO RequestHandler Handler(tag: 2796, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,869+0000 INFO RequestHandler Handler(tag: 678, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,869+0000 INFO GetFileHandler Handler(tag: 2797, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,869+0000 INFO GetFileHandler Handler(tag: 2797, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,869+0000 INFO GetFileHandler Handler(tag: 2797, GET) -> 679 +2013-08-27 01:14:04,869+0000 INFO GetFileHandler Handler(tag: 679, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,869+0000 INFO GetFileHandler Handler(tag: 679, GET) reader: LR-Handler(tag: 679, GET) +2013-08-27 01:14:04,869+0000 INFO GetFileHandler Handler(tag: 679, GET) sending length: 1925, 1776045928 +2013-08-27 01:14:04,869+0000 INFO ReadBuffer RB-LR-Handler(tag: 679, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,869+0000 INFO ReadBuffer RB-LR-Handler(tag: 679, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,869+0000 INFO LocalIOProvider LR-Handler(tag: 679, GET) rbuf: RB-LR-Handler(tag: 679, GET) +2013-08-27 01:14:04,869+0000 INFO GetFileHandler Handler(tag: 679, GET) unregistering (last) +2013-08-27 01:14:04,869+0000 INFO ReadBuffer RB-LR-Handler(tag: 679, GET) de-allocating 1 buffers +2013-08-27 01:14:04,870+0000 INFO RequestHandler Handler(tag: 680, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,870+0000 DEBUG Cpu Stagein workerid=000000 +2013-08-27 01:14:04,870+0000 INFO RequestHandler Handler(tag: 2798, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,870+0000 INFO RequestHandler Handler(tag: 681, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,870+0000 INFO GetFileHandler Handler(tag: 2799, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,870+0000 INFO GetFileHandler Handler(tag: 2799, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,870+0000 INFO GetFileHandler Handler(tag: 2799, GET) -> 682 +2013-08-27 01:14:04,870+0000 INFO GetFileHandler Handler(tag: 682, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc +2013-08-27 01:14:04,870+0000 INFO GetFileHandler Handler(tag: 682, GET) reader: LR-Handler(tag: 682, GET) +2013-08-27 01:14:04,870+0000 INFO GetFileHandler Handler(tag: 682, GET) sending length: 1925, 1416516259 +2013-08-27 01:14:04,870+0000 INFO ReadBuffer RB-LR-Handler(tag: 682, GET) will ask for 1 buffers for a size of 1925 +2013-08-27 01:14:04,870+0000 INFO ReadBuffer RB-LR-Handler(tag: 682, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,870+0000 INFO LocalIOProvider LR-Handler(tag: 682, GET) rbuf: RB-LR-Handler(tag: 682, GET) +2013-08-27 01:14:04,870+0000 INFO GetFileHandler Handler(tag: 682, GET) unregistering (last) +2013-08-27 01:14:04,870+0000 INFO ReadBuffer RB-LR-Handler(tag: 682, GET) de-allocating 1 buffers +2013-08-27 01:14:04,872+0000 INFO GetFileHandler Handler(tag: 2800, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:04,872+0000 INFO GetFileHandler Handler(tag: 2800, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:04,872+0000 INFO GetFileHandler Handler(tag: 2800, GET) -> 683 +2013-08-27 01:14:04,872+0000 INFO GetFileHandler Handler(tag: 683, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:04,872+0000 INFO GetFileHandler Handler(tag: 683, GET) reader: LR-Handler(tag: 683, GET) +2013-08-27 01:14:04,872+0000 INFO GetFileHandler Handler(tag: 683, GET) sending length: 5032, 1240584986 +2013-08-27 01:14:04,872+0000 INFO ReadBuffer RB-LR-Handler(tag: 683, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:04,872+0000 INFO ReadBuffer RB-LR-Handler(tag: 683, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,872+0000 INFO LocalIOProvider LR-Handler(tag: 683, GET) rbuf: RB-LR-Handler(tag: 683, GET) +2013-08-27 01:14:04,872+0000 INFO GetFileHandler Handler(tag: 683, GET) unregistering (last) +2013-08-27 01:14:04,872+0000 INFO ReadBuffer RB-LR-Handler(tag: 683, GET) de-allocating 1 buffers +2013-08-27 01:14:04,880+0000 INFO GetFileHandler Handler(tag: 2775, GET) sending length: 1925, 133274679 +2013-08-27 01:14:04,881+0000 INFO GetFileHandler Handler(tag: 2775, GET) unregistering (last) +2013-08-27 01:14:04,881+0000 INFO GetFileHandler Handler(tag: 2801, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,881+0000 INFO GetFileHandler Handler(tag: 2801, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,881+0000 INFO GetFileHandler Handler(tag: 2801, GET) -> 684 +2013-08-27 01:14:04,881+0000 INFO GetFileHandler Handler(tag: 684, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,881+0000 INFO GetFileHandler Handler(tag: 684, GET) reader: LR-Handler(tag: 684, GET) +2013-08-27 01:14:04,881+0000 INFO GetFileHandler Handler(tag: 684, GET) sending length: 14799449, 226356279 +2013-08-27 01:14:04,881+0000 INFO ReadBuffer RB-LR-Handler(tag: 684, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,881+0000 INFO ReadBuffer RB-LR-Handler(tag: 684, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,881+0000 INFO LocalIOProvider LR-Handler(tag: 684, GET) rbuf: RB-LR-Handler(tag: 684, GET) +2013-08-27 01:14:04,882+0000 INFO GetFileHandler Handler(tag: 2777, GET) sending length: 1925, 584067083 +2013-08-27 01:14:04,882+0000 INFO GetFileHandler Handler(tag: 2777, GET) unregistering (last) +2013-08-27 01:14:04,882+0000 INFO GetFileHandler Handler(tag: 2802, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,882+0000 INFO GetFileHandler Handler(tag: 2802, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,882+0000 INFO GetFileHandler Handler(tag: 2802, GET) -> 685 +2013-08-27 01:14:04,882+0000 INFO GetFileHandler Handler(tag: 685, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,882+0000 INFO GetFileHandler Handler(tag: 2779, GET) sending length: 1925, 931424247 +2013-08-27 01:14:04,882+0000 INFO GetFileHandler Handler(tag: 685, GET) reader: LR-Handler(tag: 685, GET) +2013-08-27 01:14:04,882+0000 INFO GetFileHandler Handler(tag: 685, GET) sending length: 14799449, 586894708 +2013-08-27 01:14:04,882+0000 INFO ReadBuffer RB-LR-Handler(tag: 685, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,883+0000 INFO ReadBuffer RB-LR-Handler(tag: 685, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,883+0000 INFO LocalIOProvider LR-Handler(tag: 685, GET) rbuf: RB-LR-Handler(tag: 685, GET) +2013-08-27 01:14:04,883+0000 INFO GetFileHandler Handler(tag: 2779, GET) unregistering (last) +2013-08-27 01:14:04,884+0000 INFO GetFileHandler Handler(tag: 2803, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,884+0000 INFO GetFileHandler Handler(tag: 2803, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,884+0000 INFO GetFileHandler Handler(tag: 2803, GET) -> 686 +2013-08-27 01:14:04,884+0000 INFO GetFileHandler Handler(tag: 686, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,884+0000 INFO GetFileHandler Handler(tag: 686, GET) reader: LR-Handler(tag: 686, GET) +2013-08-27 01:14:04,884+0000 INFO GetFileHandler Handler(tag: 686, GET) sending length: 14799449, 1670602101 +2013-08-27 01:14:04,884+0000 INFO ReadBuffer RB-LR-Handler(tag: 686, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,884+0000 INFO ReadBuffer RB-LR-Handler(tag: 686, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,884+0000 INFO LocalIOProvider LR-Handler(tag: 686, GET) rbuf: RB-LR-Handler(tag: 686, GET) +2013-08-27 01:14:04,885+0000 INFO GetFileHandler Handler(tag: 2781, GET) sending length: 1925, 500076814 +2013-08-27 01:14:04,886+0000 INFO GetFileHandler Handler(tag: 2781, GET) unregistering (last) +2013-08-27 01:14:04,888+0000 INFO GetFileHandler Handler(tag: 2804, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,888+0000 INFO GetFileHandler Handler(tag: 2783, GET) sending length: 1925, 1607436604 +2013-08-27 01:14:04,888+0000 INFO GetFileHandler Handler(tag: 2783, GET) unregistering (last) +2013-08-27 01:14:04,888+0000 INFO GetFileHandler Handler(tag: 2804, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,888+0000 INFO GetFileHandler Handler(tag: 2804, GET) -> 687 +2013-08-27 01:14:04,888+0000 INFO GetFileHandler Handler(tag: 687, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,889+0000 INFO GetFileHandler Handler(tag: 687, GET) reader: LR-Handler(tag: 687, GET) +2013-08-27 01:14:04,889+0000 INFO GetFileHandler Handler(tag: 687, GET) sending length: 14799449, 157861601 +2013-08-27 01:14:04,889+0000 INFO ReadBuffer RB-LR-Handler(tag: 687, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,889+0000 INFO ReadBuffer RB-LR-Handler(tag: 687, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,889+0000 INFO LocalIOProvider LR-Handler(tag: 687, GET) rbuf: RB-LR-Handler(tag: 687, GET) +2013-08-27 01:14:04,890+0000 INFO GetFileHandler Handler(tag: 2785, GET) sending length: 1925, 1778715694 +2013-08-27 01:14:04,891+0000 INFO ThrottleManager O maxBuffers=1024, crtBuffers=1023, allowedTransfers=0, active=0, suspended=0 +2013-08-27 01:14:04,891+0000 INFO ThrottleManager mem=180.27 MB, heap=371.44 MB, maxHeap=910.25 MB +2013-08-27 01:14:04,891+0000 INFO GetFileHandler Handler(tag: 2785, GET) unregistering (last) +2013-08-27 01:14:04,893+0000 INFO GetFileHandler Handler(tag: 2805, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,893+0000 INFO GetFileHandler Handler(tag: 2805, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,893+0000 INFO GetFileHandler Handler(tag: 2805, GET) -> 688 +2013-08-27 01:14:04,893+0000 INFO GetFileHandler Handler(tag: 688, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,893+0000 INFO GetFileHandler Handler(tag: 2787, GET) sending length: 1925, 1519150663 +2013-08-27 01:14:04,893+0000 INFO GetFileHandler Handler(tag: 688, GET) reader: LR-Handler(tag: 688, GET) +2013-08-27 01:14:04,893+0000 INFO GetFileHandler Handler(tag: 688, GET) sending length: 14799449, 932113858 +2013-08-27 01:14:04,893+0000 INFO ReadBuffer RB-LR-Handler(tag: 688, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,893+0000 INFO ReadBuffer RB-LR-Handler(tag: 688, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,893+0000 INFO LocalIOProvider LR-Handler(tag: 688, GET) rbuf: RB-LR-Handler(tag: 688, GET) +2013-08-27 01:14:04,893+0000 INFO GetFileHandler Handler(tag: 2806, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,893+0000 INFO GetFileHandler Handler(tag: 2806, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,893+0000 INFO GetFileHandler Handler(tag: 2806, GET) -> 689 +2013-08-27 01:14:04,893+0000 INFO GetFileHandler Handler(tag: 689, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,893+0000 INFO GetFileHandler Handler(tag: 689, GET) reader: LR-Handler(tag: 689, GET) +2013-08-27 01:14:04,893+0000 INFO GetFileHandler Handler(tag: 689, GET) sending length: 14799449, 2140065057 +2013-08-27 01:14:04,893+0000 INFO ReadBuffer RB-LR-Handler(tag: 689, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,893+0000 INFO ReadBuffer RB-LR-Handler(tag: 689, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,893+0000 INFO LocalIOProvider LR-Handler(tag: 689, GET) rbuf: RB-LR-Handler(tag: 689, GET) +2013-08-27 01:14:04,893+0000 INFO GetFileHandler Handler(tag: 2787, GET) unregistering (last) +2013-08-27 01:14:04,894+0000 INFO GetFileHandler Handler(tag: 2789, GET) sending length: 1925, 1541493866 +2013-08-27 01:14:04,894+0000 INFO GetFileHandler Handler(tag: 2807, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,894+0000 INFO GetFileHandler Handler(tag: 2807, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,894+0000 INFO GetFileHandler Handler(tag: 2807, GET) -> 690 +2013-08-27 01:14:04,894+0000 INFO GetFileHandler Handler(tag: 690, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,894+0000 INFO GetFileHandler Handler(tag: 690, GET) reader: LR-Handler(tag: 690, GET) +2013-08-27 01:14:04,894+0000 INFO GetFileHandler Handler(tag: 690, GET) sending length: 14799449, 1223847263 +2013-08-27 01:14:04,894+0000 INFO ReadBuffer RB-LR-Handler(tag: 690, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,894+0000 INFO ReadBuffer RB-LR-Handler(tag: 690, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,894+0000 INFO LocalIOProvider LR-Handler(tag: 690, GET) rbuf: RB-LR-Handler(tag: 690, GET) +2013-08-27 01:14:04,894+0000 INFO GetFileHandler Handler(tag: 2789, GET) unregistering (last) +2013-08-27 01:14:04,895+0000 INFO GetFileHandler Handler(tag: 2791, GET) sending length: 1925, 1350986978 +2013-08-27 01:14:04,895+0000 INFO GetFileHandler Handler(tag: 2808, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,895+0000 INFO GetFileHandler Handler(tag: 2808, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,895+0000 INFO GetFileHandler Handler(tag: 2808, GET) -> 691 +2013-08-27 01:14:04,895+0000 INFO GetFileHandler Handler(tag: 691, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,895+0000 INFO GetFileHandler Handler(tag: 691, GET) reader: LR-Handler(tag: 691, GET) +2013-08-27 01:14:04,895+0000 INFO GetFileHandler Handler(tag: 691, GET) sending length: 14799449, 1924876336 +2013-08-27 01:14:04,895+0000 INFO ReadBuffer RB-LR-Handler(tag: 691, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,895+0000 INFO ReadBuffer RB-LR-Handler(tag: 691, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,895+0000 INFO LocalIOProvider LR-Handler(tag: 691, GET) rbuf: RB-LR-Handler(tag: 691, GET) +2013-08-27 01:14:04,895+0000 INFO GetFileHandler Handler(tag: 2791, GET) unregistering (last) +2013-08-27 01:14:04,896+0000 INFO GetFileHandler Handler(tag: 2809, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,896+0000 INFO GetFileHandler Handler(tag: 2809, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,896+0000 INFO GetFileHandler Handler(tag: 2809, GET) -> 692 +2013-08-27 01:14:04,896+0000 INFO GetFileHandler Handler(tag: 692, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,896+0000 INFO GetFileHandler Handler(tag: 692, GET) reader: LR-Handler(tag: 692, GET) +2013-08-27 01:14:04,896+0000 INFO GetFileHandler Handler(tag: 692, GET) sending length: 14799449, 950746193 +2013-08-27 01:14:04,896+0000 INFO ReadBuffer RB-LR-Handler(tag: 692, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,896+0000 INFO ReadBuffer RB-LR-Handler(tag: 692, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,896+0000 INFO LocalIOProvider LR-Handler(tag: 692, GET) rbuf: RB-LR-Handler(tag: 692, GET) +2013-08-27 01:14:04,896+0000 INFO GetFileHandler Handler(tag: 2793, GET) sending length: 1925, 671638060 +2013-08-27 01:14:04,897+0000 INFO GetFileHandler Handler(tag: 2793, GET) unregistering (last) +2013-08-27 01:14:04,897+0000 INFO GetFileHandler Handler(tag: 2795, GET) sending length: 1925, 1769117532 +2013-08-27 01:14:04,897+0000 INFO GetFileHandler Handler(tag: 2795, GET) unregistering (last) +2013-08-27 01:14:04,897+0000 INFO GetFileHandler Handler(tag: 2810, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,897+0000 INFO GetFileHandler Handler(tag: 2810, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,897+0000 INFO GetFileHandler Handler(tag: 2810, GET) -> 693 +2013-08-27 01:14:04,897+0000 INFO GetFileHandler Handler(tag: 693, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,897+0000 INFO GetFileHandler Handler(tag: 693, GET) reader: LR-Handler(tag: 693, GET) +2013-08-27 01:14:04,897+0000 INFO GetFileHandler Handler(tag: 693, GET) sending length: 14799449, 1648713402 +2013-08-27 01:14:04,897+0000 INFO ReadBuffer RB-LR-Handler(tag: 693, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,897+0000 INFO ReadBuffer RB-LR-Handler(tag: 693, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,897+0000 INFO LocalIOProvider LR-Handler(tag: 693, GET) rbuf: RB-LR-Handler(tag: 693, GET) +2013-08-27 01:14:04,897+0000 INFO GetFileHandler Handler(tag: 2811, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,898+0000 INFO GetFileHandler Handler(tag: 2811, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,898+0000 INFO GetFileHandler Handler(tag: 2811, GET) -> 694 +2013-08-27 01:14:04,898+0000 INFO GetFileHandler Handler(tag: 694, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,898+0000 INFO GetFileHandler Handler(tag: 694, GET) reader: LR-Handler(tag: 694, GET) +2013-08-27 01:14:04,898+0000 INFO GetFileHandler Handler(tag: 694, GET) sending length: 14799449, 388855340 +2013-08-27 01:14:04,898+0000 INFO ReadBuffer RB-LR-Handler(tag: 694, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,898+0000 INFO ReadBuffer RB-LR-Handler(tag: 694, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,898+0000 INFO LocalIOProvider LR-Handler(tag: 694, GET) rbuf: RB-LR-Handler(tag: 694, GET) +2013-08-27 01:14:04,898+0000 INFO GetFileHandler Handler(tag: 2797, GET) sending length: 1925, 711373023 +2013-08-27 01:14:04,898+0000 INFO GetFileHandler Handler(tag: 2797, GET) unregistering (last) +2013-08-27 01:14:04,899+0000 INFO GetFileHandler Handler(tag: 2812, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,899+0000 INFO GetFileHandler Handler(tag: 2812, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,899+0000 INFO GetFileHandler Handler(tag: 2812, GET) -> 695 +2013-08-27 01:14:04,899+0000 INFO GetFileHandler Handler(tag: 695, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,899+0000 INFO GetFileHandler Handler(tag: 695, GET) reader: LR-Handler(tag: 695, GET) +2013-08-27 01:14:04,899+0000 INFO GetFileHandler Handler(tag: 695, GET) sending length: 14799449, 1816197624 +2013-08-27 01:14:04,899+0000 INFO ReadBuffer RB-LR-Handler(tag: 695, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,899+0000 INFO ReadBuffer RB-LR-Handler(tag: 695, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,899+0000 INFO LocalIOProvider LR-Handler(tag: 695, GET) rbuf: RB-LR-Handler(tag: 695, GET) +2013-08-27 01:14:04,899+0000 INFO GetFileHandler Handler(tag: 2799, GET) sending length: 1925, 626708530 +2013-08-27 01:14:04,899+0000 INFO GetFileHandler Handler(tag: 2799, GET) unregistering (last) +2013-08-27 01:14:04,900+0000 INFO GetFileHandler Handler(tag: 2813, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,900+0000 INFO GetFileHandler Handler(tag: 2813, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,900+0000 INFO GetFileHandler Handler(tag: 2813, GET) -> 696 +2013-08-27 01:14:04,900+0000 INFO GetFileHandler Handler(tag: 696, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz +2013-08-27 01:14:04,900+0000 INFO GetFileHandler Handler(tag: 696, GET) reader: LR-Handler(tag: 696, GET) +2013-08-27 01:14:04,900+0000 INFO GetFileHandler Handler(tag: 696, GET) sending length: 14799449, 1574160590 +2013-08-27 01:14:04,900+0000 INFO ReadBuffer RB-LR-Handler(tag: 696, GET) will ask for 8 buffers for a size of 14799449 +2013-08-27 01:14:04,900+0000 INFO ReadBuffer RB-LR-Handler(tag: 696, GET) actual allocated buffers 8(0 queued) +2013-08-27 01:14:04,900+0000 INFO LocalIOProvider LR-Handler(tag: 696, GET) rbuf: RB-LR-Handler(tag: 696, GET) +2013-08-27 01:14:04,900+0000 INFO ThrottleManager I maxBuffers=1024, crtBuffers=208, allowedTransfers=119, active=0, suspended=0 +2013-08-27 01:14:04,900+0000 INFO GetFileHandler Handler(tag: 2800, GET) sending length: 5032, 409614416 +2013-08-27 01:14:04,901+0000 INFO GetFileHandler Handler(tag: 2800, GET) unregistering (last) +2013-08-27 01:14:04,901+0000 INFO GetFileHandler Handler(tag: 2814, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:04,901+0000 INFO GetFileHandler Handler(tag: 2814, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:04,901+0000 INFO GetFileHandler Handler(tag: 2814, GET) -> 697 +2013-08-27 01:14:04,901+0000 INFO GetFileHandler Handler(tag: 697, GET) request complete; src=file://localhost//home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/../libexec/_swiftwrap.staging +2013-08-27 01:14:04,901+0000 INFO GetFileHandler Handler(tag: 697, GET) reader: LR-Handler(tag: 697, GET) +2013-08-27 01:14:04,901+0000 INFO GetFileHandler Handler(tag: 697, GET) sending length: 6078, 2010359593 +2013-08-27 01:14:04,901+0000 INFO ReadBuffer RB-LR-Handler(tag: 697, GET) will ask for 1 buffers for a size of 6078 +2013-08-27 01:14:04,902+0000 INFO ReadBuffer RB-LR-Handler(tag: 697, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:04,902+0000 INFO LocalIOProvider LR-Handler(tag: 697, GET) rbuf: RB-LR-Handler(tag: 697, GET) +2013-08-27 01:14:04,902+0000 INFO GetFileHandler Handler(tag: 697, GET) unregistering (last) +2013-08-27 01:14:04,902+0000 INFO ReadBuffer RB-LR-Handler(tag: 697, GET) de-allocating 1 buffers +2013-08-27 01:14:04,906+0000 INFO GetFileHandler Handler(tag: 2801, GET) sending length: 14799449, 505981319 +2013-08-27 01:14:04,908+0000 INFO GetFileHandler Handler(tag: 2802, GET) sending length: 14799449, 1944447489 +2013-08-27 01:14:04,910+0000 INFO GetFileHandler Handler(tag: 2803, GET) sending length: 14799449, 1322260417 +2013-08-27 01:14:04,915+0000 INFO GetFileHandler Handler(tag: 2804, GET) sending length: 14799449, 1561651729 +2013-08-27 01:14:04,919+0000 INFO GetFileHandler Handler(tag: 2805, GET) sending length: 14799449, 540078594 +2013-08-27 01:14:04,921+0000 INFO GetFileHandler Handler(tag: 2806, GET) sending length: 14799449, 1063990225 +2013-08-27 01:14:04,922+0000 INFO GetFileHandler Handler(tag: 2807, GET) sending length: 14799449, 1723247785 +2013-08-27 01:14:04,923+0000 INFO GetFileHandler Handler(tag: 2808, GET) sending length: 14799449, 1477014130 +2013-08-27 01:14:04,925+0000 INFO GetFileHandler Handler(tag: 2809, GET) sending length: 14799449, 1909592106 +2013-08-27 01:14:04,928+0000 INFO GetFileHandler Handler(tag: 2810, GET) sending length: 14799449, 1617017195 +2013-08-27 01:14:04,929+0000 INFO GetFileHandler Handler(tag: 2811, GET) sending length: 14799449, 635077497 +2013-08-27 01:14:04,931+0000 INFO GetFileHandler Handler(tag: 2812, GET) sending length: 14799449, 547346970 +2013-08-27 01:14:04,933+0000 INFO GetFileHandler Handler(tag: 2813, GET) sending length: 14799449, 300243664 +2013-08-27 01:14:04,935+0000 INFO GetFileHandler Handler(tag: 2814, GET) sending length: 6078, 2026604207 +2013-08-27 01:14:04,936+0000 INFO GetFileHandler Handler(tag: 2814, GET) unregistering (last) +2013-08-27 01:14:04,949+0000 INFO ProxyIOProvider Command(tag: 588, GET) resuming +2013-08-27 01:14:04,949+0000 INFO GetFileHandler Handler(tag: 588, GET) resuming +2013-08-27 01:14:04,983+0000 DEBUG Cpu Active workerid=0827-1301520-000001:000000 +2013-08-27 01:14:04,983+0000 INFO RequestHandler Handler(tag: 2815, JOBSTATUS) unregistering (send) +2013-08-27 01:14:04,983+0000 INFO RequestHandler Handler(tag: 698, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,010+0000 INFO RuntimeStats$ProgressTicker Stage in:31 Active:1 Failed but can retry:1 +2013-08-27 01:14:05,255+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:05,255+0000 INFO RequestHandler Handler(tag: 2816, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,255+0000 INFO RequestHandler Handler(tag: 699, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,255+0000 INFO PutFileHandler Handler(tag: 2817, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/i/runampl-idztedel/wrapper.log +2013-08-27 01:14:05,255+0000 INFO PutFileHandler Handler(tag: 2817, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-idztedel.info +2013-08-27 01:14:05,255+0000 INFO PutFileCommand Sending Command(tag: 700, PUT) (t) on cpipe://1 +2013-08-27 01:14:05,255+0000 INFO PutFileCommand Command(tag: 700, PUT) (t) sending data +2013-08-27 01:14:05,255+0000 INFO PutFileHandler Handler(tag: 2817, PUT) -> 700 +2013-08-27 01:14:05,255+0000 INFO PutFileHandler Handler(tag: 700, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/i/runampl-idztedel/wrapper.log +2013-08-27 01:14:05,255+0000 INFO PutFileHandler Handler(tag: 700, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-idztedel.info +2013-08-27 01:14:05,256+0000 DEBUG Cpu Stageout workerid=000000 +2013-08-27 01:14:05,256+0000 INFO RequestHandler Handler(tag: 2818, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,256+0000 INFO RequestHandler Handler(tag: 701, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,256+0000 INFO PutFileHandler Handler(tag: 2819, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/i/runampl-idztedel/wrapper.error +2013-08-27 01:14:05,256+0000 INFO PutFileHandler Handler(tag: 2819, PUT) destination: proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S/inference4galaxy-20130827-0113-r1k3cjmc/runampl-idztedel.error +2013-08-27 01:14:05,256+0000 INFO PutFileCommand Sending Command(tag: 702, PUT) (t) on cpipe://1 +2013-08-27 01:14:05,256+0000 INFO PutFileHandler Handler(tag: 702, PUT) source: /tmp/swift.work/inference4galaxy-20130827-0113-r1k3cjmc/jobs/i/runampl-idztedel/wrapper.error +2013-08-27 01:14:05,256+0000 INFO PutFileCommand Command(tag: 702, PUT) (t) sending data +2013-08-27 01:14:05,256+0000 INFO PutFileHandler Handler(tag: 2819, PUT) -> 702 +2013-08-27 01:14:05,256+0000 INFO PutFileHandler Handler(tag: 702, PUT) destination: file://localhost/inference4galaxy-20130827-0113-r1k3cjmc/runampl-idztedel.error +2013-08-27 01:14:05,257+0000 INFO PutFileHandler Handler(tag: 700, PUT) Transfer done +2013-08-27 01:14:05,257+0000 INFO RequestHandler Handler(tag: 700, PUT) unregistering (send) +2013-08-27 01:14:05,257+0000 INFO PutFileHandler Handler(tag: 702, PUT) Transfer done +2013-08-27 01:14:05,257+0000 INFO RequestHandler Handler(tag: 702, PUT) unregistering (send) +2013-08-27 01:14:05,267+0000 INFO GetFileHandler Handler(tag: 3288, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:05,267+0000 INFO GetFileHandler Handler(tag: 3288, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:05,267+0000 INFO GetFileHandler Handler(tag: 3288, GET) -> 703 +2013-08-27 01:14:05,267+0000 INFO GetFileHandler Handler(tag: 703, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc +2013-08-27 01:14:05,267+0000 INFO GetFileHandler Handler(tag: 703, GET) reader: LR-Handler(tag: 703, GET) +2013-08-27 01:14:05,267+0000 INFO GetFileHandler Handler(tag: 703, GET) sending length: 543, 119759377 +2013-08-27 01:14:05,267+0000 INFO ReadBuffer RB-LR-Handler(tag: 703, GET) will ask for 1 buffers for a size of 543 +2013-08-27 01:14:05,267+0000 INFO ReadBuffer RB-LR-Handler(tag: 703, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:05,267+0000 INFO LocalIOProvider LR-Handler(tag: 703, GET) rbuf: RB-LR-Handler(tag: 703, GET) +2013-08-27 01:14:05,267+0000 INFO GetFileHandler Handler(tag: 703, GET) unregistering (last) +2013-08-27 01:14:05,267+0000 INFO ReadBuffer RB-LR-Handler(tag: 703, GET) de-allocating 1 buffers +2013-08-27 01:14:05,277+0000 INFO ProxyIOProvider Command(tag: 591, GET) resuming +2013-08-27 01:14:05,277+0000 INFO GetFileHandler Handler(tag: 591, GET) resuming +2013-08-27 01:14:05,279+0000 INFO GetFileHandler Handler(tag: 3289, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:05,279+0000 INFO GetFileHandler Handler(tag: 3289, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:05,279+0000 INFO GetFileHandler Handler(tag: 3289, GET) -> 704 +2013-08-27 01:14:05,279+0000 INFO GetFileHandler Handler(tag: 704, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:05,279+0000 INFO GetFileHandler Handler(tag: 704, GET) reader: LR-Handler(tag: 704, GET) +2013-08-27 01:14:05,279+0000 INFO GetFileHandler Handler(tag: 704, GET) sending length: 5032, 1202555572 +2013-08-27 01:14:05,279+0000 INFO ReadBuffer RB-LR-Handler(tag: 704, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:05,279+0000 INFO ReadBuffer RB-LR-Handler(tag: 704, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:05,279+0000 INFO LocalIOProvider LR-Handler(tag: 704, GET) rbuf: RB-LR-Handler(tag: 704, GET) +2013-08-27 01:14:05,279+0000 INFO GetFileHandler Handler(tag: 704, GET) unregistering (last) +2013-08-27 01:14:05,279+0000 INFO ReadBuffer RB-LR-Handler(tag: 704, GET) de-allocating 1 buffers +2013-08-27 01:14:05,279+0000 INFO GetFileHandler Handler(tag: 3290, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:05,279+0000 INFO GetFileHandler Handler(tag: 3290, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:05,279+0000 INFO GetFileHandler Handler(tag: 3290, GET) -> 705 +2013-08-27 01:14:05,279+0000 INFO GetFileHandler Handler(tag: 705, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:05,279+0000 INFO GetFileHandler Handler(tag: 705, GET) reader: LR-Handler(tag: 705, GET) +2013-08-27 01:14:05,280+0000 INFO GetFileHandler Handler(tag: 705, GET) sending length: 5032, 129106928 +2013-08-27 01:14:05,280+0000 INFO ReadBuffer RB-LR-Handler(tag: 705, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:05,280+0000 INFO ReadBuffer RB-LR-Handler(tag: 705, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:05,280+0000 INFO LocalIOProvider LR-Handler(tag: 705, GET) rbuf: RB-LR-Handler(tag: 705, GET) +2013-08-27 01:14:05,280+0000 INFO GetFileHandler Handler(tag: 705, GET) unregistering (last) +2013-08-27 01:14:05,280+0000 INFO ReadBuffer RB-LR-Handler(tag: 705, GET) de-allocating 1 buffers +2013-08-27 01:14:05,280+0000 INFO GetFileHandler Handler(tag: 3291, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:05,280+0000 INFO GetFileHandler Handler(tag: 3291, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:05,280+0000 INFO GetFileHandler Handler(tag: 3291, GET) -> 706 +2013-08-27 01:14:05,280+0000 INFO GetFileHandler Handler(tag: 706, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:05,280+0000 INFO GetFileHandler Handler(tag: 706, GET) reader: LR-Handler(tag: 706, GET) +2013-08-27 01:14:05,280+0000 INFO GetFileHandler Handler(tag: 706, GET) sending length: 5032, 1595750039 +2013-08-27 01:14:05,280+0000 INFO ReadBuffer RB-LR-Handler(tag: 706, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:05,280+0000 INFO ReadBuffer RB-LR-Handler(tag: 706, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:05,280+0000 INFO LocalIOProvider LR-Handler(tag: 706, GET) rbuf: RB-LR-Handler(tag: 706, GET) +2013-08-27 01:14:05,280+0000 INFO GetFileHandler Handler(tag: 706, GET) unregistering (last) +2013-08-27 01:14:05,280+0000 INFO ReadBuffer RB-LR-Handler(tag: 706, GET) de-allocating 1 buffers +2013-08-27 01:14:05,280+0000 INFO GetFileHandler Handler(tag: 3292, GET) request complete; src=proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:05,280+0000 INFO GetFileHandler Handler(tag: 3292, GET) reader: PR proxy://u45ce06b6-140bd55810a--7fff-u45ce06b6-140bd55810a--8000S//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:05,280+0000 INFO GetFileHandler Handler(tag: 3292, GET) -> 707 +2013-08-27 01:14:05,280+0000 INFO GetFileHandler Handler(tag: 707, GET) request complete; src=file://localhost//scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod +2013-08-27 01:14:05,280+0000 INFO GetFileHandler Handler(tag: 707, GET) reader: LR-Handler(tag: 707, GET) +2013-08-27 01:14:05,280+0000 INFO GetFileHandler Handler(tag: 707, GET) sending length: 5032, 1201369501 +2013-08-27 01:14:05,280+0000 INFO ReadBuffer RB-LR-Handler(tag: 707, GET) will ask for 1 buffers for a size of 5032 +2013-08-27 01:14:05,280+0000 INFO ReadBuffer RB-LR-Handler(tag: 707, GET) actual allocated buffers 1(0 queued) +2013-08-27 01:14:05,280+0000 INFO LocalIOProvider LR-Handler(tag: 707, GET) rbuf: RB-LR-Handler(tag: 707, GET) +2013-08-27 01:14:05,280+0000 INFO GetFileHandler Handler(tag: 707, GET) unregistering (last) +2013-08-27 01:14:05,280+0000 INFO ReadBuffer RB-LR-Handler(tag: 707, GET) de-allocating 1 buffers +2013-08-27 01:14:05,312+0000 INFO PutFileHandler Handler(tag: 2817, PUT) Transfer done +2013-08-27 01:14:05,312+0000 INFO RequestHandler Handler(tag: 2817, PUT) unregistering (send) +2013-08-27 01:14:05,312+0000 INFO PutFileHandler Handler(tag: 2819, PUT) Transfer done +2013-08-27 01:14:05,312+0000 INFO RequestHandler Handler(tag: 2819, PUT) unregistering (send) +2013-08-27 01:14:05,322+0000 INFO GetFileHandler Handler(tag: 3288, GET) sending length: 543, 1941753307 +2013-08-27 01:14:05,322+0000 INFO GetFileHandler Handler(tag: 3288, GET) unregistering (last) +2013-08-27 01:14:05,336+0000 INFO GetFileHandler Handler(tag: 3289, GET) sending length: 5032, 262977498 +2013-08-27 01:14:05,337+0000 INFO GetFileHandler Handler(tag: 3289, GET) unregistering (last) +2013-08-27 01:14:05,337+0000 INFO GetFileHandler Handler(tag: 3290, GET) sending length: 5032, 898386736 +2013-08-27 01:14:05,337+0000 INFO GetFileHandler Handler(tag: 3290, GET) unregistering (last) +2013-08-27 01:14:05,337+0000 INFO GetFileHandler Handler(tag: 3291, GET) sending length: 5032, 323408076 +2013-08-27 01:14:05,338+0000 INFO GetFileHandler Handler(tag: 3291, GET) unregistering (last) +2013-08-27 01:14:05,339+0000 INFO GetFileHandler Handler(tag: 3292, GET) sending length: 5032, 2114577770 +2013-08-27 01:14:05,339+0000 INFO GetFileHandler Handler(tag: 3292, GET) unregistering (last) +2013-08-27 01:14:05,391+0000 INFO ThrottleManager O maxBuffers=1024, crtBuffers=1023, allowedTransfers=0, active=0, suspended=0 +2013-08-27 01:14:05,391+0000 INFO ThrottleManager mem=174.48 MB, heap=398.88 MB, maxHeap=910.25 MB +2013-08-27 01:14:05,400+0000 INFO ThrottleManager I maxBuffers=1024, crtBuffers=208, allowedTransfers=119, active=0, suspended=0 +2013-08-27 01:14:05,444+0000 INFO GetFileHandler Handler(tag: 567, GET) unregistering (last) +2013-08-27 01:14:05,444+0000 INFO ReadBuffer RB-LR-Handler(tag: 567, GET) de-allocating 8 buffers +2013-08-27 01:14:05,501+0000 INFO GetFileHandler Handler(tag: 3272, GET) unregistering (last) +2013-08-27 01:14:05,613+0000 DEBUG Cpu Failed Job failed with and exit code of 1 +2013-08-27 01:14:05,613+0000 INFO Cpu 0827-1301520-000001:5 jobTerminated +2013-08-27 01:14:05,613+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=5 +2013-08-27 01:14:05,613+0000 INFO RequestHandler Handler(tag: 2820, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,613+0000 DEBUG Cpu requesting work: block=0827-1301520-000001 id=5 Cpus sleeping: 1 +2013-08-27 01:14:05,613+0000 DEBUG Cpu 0827-1301520-000001:5 sleeping +2013-08-27 01:14:05,614+0000 INFO RequestHandler Handler(tag: 708, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,615+0000 INFO LateBindingScheduler jobs queued: 1 +2013-08-27 01:14:05,615+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-idztedel - Application exception: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + +Caused by: org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 +org.globus.cog.abstraction.impl.common.execution.JobException: Job failed with and exit code of 1 (exit code: 1) + at org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:40) + at org.globus.cog.coaster.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88) + at org.globus.cog.coaster.channels.AbstractCoasterChannel.handleRequest(AbstractCoasterChannel.java:527) + at org.globus.cog.coaster.channels.AbstractStreamCoasterChannel.stepNIO(AbstractStreamCoasterChannel.java:238) + at org.globus.cog.coaster.channels.NIOMultiplexer.loop(NIOMultiplexer.java:97) + at org.globus.cog.coaster.channels.NIOMultiplexer.run(NIOMultiplexer.java:56) + (exit code: 1) +2013-08-27 01:14:05,615+0000 INFO swift END_FAILURE thread=R-42-0-1x2-17-0 tr=runampl +2013-08-27 01:14:05,617+0000 INFO Loader Swift finished with errors +2013-08-27 01:14:05,618+0000 INFO ServiceManager Cleaning up... +2013-08-27 01:14:05,618+0000 INFO ServiceManager Shutting down service at https://128.135.112.73:50002 +2013-08-27 01:14:05,674+0000 INFO RequestHandler Handler(tag: 66, SHUTDOWNSERVICE) unregistering (send) +2013-08-27 01:14:05,715+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-zdztedel thread=R-42-0-1x2-12-0 host=midway replicationGroup=null +2013-08-27 01:14:05,715+0000 DEBUG swift JOB_START jobid=runampl-zdztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0012.out, outdir/xhat_l20000_0001.0012.out, obj_outdir/obj_out_l0000_0001.0012.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0012.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/z/runampl-zdztedel host=midway +2013-08-27 01:14:05,775+0000 INFO RequestHandler Handler(tag: 709, UNREGISTER) unregistering (send) +2013-08-27 01:14:05,778+0000 INFO BlockQueueProcessor Shutting down blocks +2013-08-27 01:14:05,778+0000 INFO Block Shutting down block Block 0827-1301520-000000 (16x7440.000s) +2013-08-27 01:14:05,778+0000 INFO Cpu 0827-1301520-000000-0: Job still running while shutting down +2013-08-27 01:14:05,778+0000 INFO RemoteLogHandler BLOCK_SHUTDOWN id=0827-1301520-000000 +2013-08-27 01:14:05,778+0000 INFO RequestHandler Handler(tag: 710, RLOG) unregistering (send) +2013-08-27 01:14:05,778+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,778+0000 INFO Cpu 0827-1301520-000000:0 jobTerminated +2013-08-27 01:14:05,778+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=0 +2013-08-27 01:14:05,779+0000 INFO RequestHandler Handler(tag: 711, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,779+0000 INFO Cpu 0827-1301520-000000-1: Job still running while shutting down +2013-08-27 01:14:05,779+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,779+0000 INFO Cpu 0827-1301520-000000:1 jobTerminated +2013-08-27 01:14:05,779+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=1 +2013-08-27 01:14:05,779+0000 INFO Cpu 0827-1301520-000000-2: Job still running while shutting down +2013-08-27 01:14:05,779+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,779+0000 INFO Cpu 0827-1301520-000000:2 jobTerminated +2013-08-27 01:14:05,779+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=2 +2013-08-27 01:14:05,779+0000 INFO Cpu 0827-1301520-000000-3: Job still running while shutting down +2013-08-27 01:14:05,779+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,779+0000 INFO RequestHandler Handler(tag: 712, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,779+0000 INFO Cpu 0827-1301520-000000:3 jobTerminated +2013-08-27 01:14:05,779+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=3 +2013-08-27 01:14:05,779+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-edztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,779+0000 INFO Cpu 0827-1301520-000000-4: Job still running while shutting down +2013-08-27 01:14:05,779+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,779+0000 INFO Cpu 0827-1301520-000000:4 jobTerminated +2013-08-27 01:14:05,779+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=4 +2013-08-27 01:14:05,779+0000 INFO Cpu 0827-1301520-000000-5: Job still running while shutting down +2013-08-27 01:14:05,779+0000 INFO RequestHandler Handler(tag: 713, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,780+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,780+0000 INFO RequestHandler Handler(tag: 714, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,780+0000 INFO Cpu 0827-1301520-000000:5 jobTerminated +2013-08-27 01:14:05,780+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=5 +2013-08-27 01:14:05,780+0000 INFO Cpu 0827-1301520-000000-6: Job still running while shutting down +2013-08-27 01:14:05,780+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,780+0000 INFO Cpu 0827-1301520-000000:6 jobTerminated +2013-08-27 01:14:05,780+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=6 +2013-08-27 01:14:05,780+0000 INFO Cpu 0827-1301520-000000-7: Job still running while shutting down +2013-08-27 01:14:05,780+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,780+0000 INFO RequestHandler Handler(tag: 715, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,780+0000 INFO swift END_FAILURE thread=R-42-0-1x2-10-0 tr=runampl +2013-08-27 01:14:05,780+0000 INFO Cpu 0827-1301520-000000:7 jobTerminated +2013-08-27 01:14:05,780+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=7 +2013-08-27 01:14:05,780+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-gdztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,780+0000 INFO Cpu 0827-1301520-000000-8: Job still running while shutting down +2013-08-27 01:14:05,780+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,780+0000 INFO Cpu 0827-1301520-000000:8 jobTerminated +2013-08-27 01:14:05,780+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=8 +2013-08-27 01:14:05,780+0000 INFO Cpu 0827-1301520-000000-9: Job still running while shutting down +2013-08-27 01:14:05,780+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,780+0000 INFO Cpu 0827-1301520-000000:9 jobTerminated +2013-08-27 01:14:05,780+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=9 +2013-08-27 01:14:05,780+0000 INFO Cpu 0827-1301520-000000-10: Job still running while shutting down +2013-08-27 01:14:05,780+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,780+0000 INFO swift END_FAILURE thread=R-42-0-1x2-5-0 tr=runampl +2013-08-27 01:14:05,782+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-5dztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,782+0000 INFO Cpu 0827-1301520-000000:10 jobTerminated +2013-08-27 01:14:05,782+0000 INFO RequestHandler Handler(tag: 716, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,782+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=10 +2013-08-27 01:14:05,782+0000 INFO Cpu 0827-1301520-000000-11: Job still running while shutting down +2013-08-27 01:14:05,782+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,782+0000 INFO Cpu 0827-1301520-000000:11 jobTerminated +2013-08-27 01:14:05,782+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=11 +2013-08-27 01:14:05,782+0000 INFO Cpu 0827-1301520-000000-12: Job still running while shutting down +2013-08-27 01:14:05,782+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,782+0000 INFO Cpu 0827-1301520-000000:12 jobTerminated +2013-08-27 01:14:05,782+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=12 +2013-08-27 01:14:05,782+0000 INFO swift END_FAILURE thread=R-42-0-1-0-3-0 tr=runampl +2013-08-27 01:14:05,782+0000 INFO Cpu 0827-1301520-000000-13: Job still running while shutting down +2013-08-27 01:14:05,782+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,782+0000 INFO Cpu 0827-1301520-000000:13 jobTerminated +2013-08-27 01:14:05,782+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=13 +2013-08-27 01:14:05,782+0000 INFO Cpu 0827-1301520-000000-14: Job still running while shutting down +2013-08-27 01:14:05,782+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,782+0000 INFO Cpu 0827-1301520-000000:14 jobTerminated +2013-08-27 01:14:05,782+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=14 +2013-08-27 01:14:05,782+0000 INFO Cpu 0827-1301520-000000-15: Job still running while shutting down +2013-08-27 01:14:05,782+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,782+0000 INFO Cpu 0827-1301520-000000:15 jobTerminated +2013-08-27 01:14:05,782+0000 DEBUG Cpu ready for work: block=0827-1301520-000000 id=15 +2013-08-27 01:14:05,782+0000 INFO Block Adding short shutdown watchdog: count = 16, workers = 16, now = true +2013-08-27 01:14:05,782+0000 INFO Block Average utilization: 98.53% +2013-08-27 01:14:05,780+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-4dztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,781+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-9dztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,782+0000 INFO Block Shutting down block Block 0827-1301520-000001 (16x7440.000s) +2013-08-27 01:14:05,782+0000 INFO Cpu 0827-1301520-000001-0: Job still running while shutting down +2013-08-27 01:14:05,782+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,782+0000 INFO Cpu 0827-1301520-000001:0 jobTerminated +2013-08-27 01:14:05,782+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=0 +2013-08-27 01:14:05,783+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-3dztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,783+0000 INFO RequestHandler Handler(tag: 717, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,783+0000 INFO Cpu 0827-1301520-000001-1: Job still running while shutting down +2013-08-27 01:14:05,783+0000 INFO swift END_FAILURE thread=R-42-0-1x2-19-0 tr=runampl +2013-08-27 01:14:05,783+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,783+0000 INFO Cpu 0827-1301520-000001:1 jobTerminated +2013-08-27 01:14:05,783+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=1 +2013-08-27 01:14:05,783+0000 INFO Cpu 0827-1301520-000001-2: Job still running while shutting down +2013-08-27 01:14:05,783+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,783+0000 INFO Cpu 0827-1301520-000001:2 jobTerminated +2013-08-27 01:14:05,783+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=2 +2013-08-27 01:14:05,783+0000 INFO swift END_FAILURE thread=R-42-0-1x3-0 tr=runampl +2013-08-27 01:14:05,783+0000 INFO swift END_FAILURE thread=R-42-0-1x2-18-0 tr=runampl +2013-08-27 01:14:05,783+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-2dztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,783+0000 INFO Cpu 0827-1301520-000001-3: Job still running while shutting down +2013-08-27 01:14:05,783+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,783+0000 INFO Cpu 0827-1301520-000001:3 jobTerminated +2013-08-27 01:14:05,783+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=3 +2013-08-27 01:14:05,783+0000 INFO Cpu 0827-1301520-000001-4: Job still running while shutting down +2013-08-27 01:14:05,783+0000 INFO RequestHandler Handler(tag: 718, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,783+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,783+0000 INFO Cpu 0827-1301520-000001:4 jobTerminated +2013-08-27 01:14:05,783+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=4 +2013-08-27 01:14:05,784+0000 INFO RequestHandler Handler(tag: 719, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,784+0000 INFO Cpu 0827-1301520-000001-6: Job still running while shutting down +2013-08-27 01:14:05,784+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,784+0000 INFO Cpu 0827-1301520-000001:6 jobTerminated +2013-08-27 01:14:05,784+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=6 +2013-08-27 01:14:05,784+0000 INFO Cpu 0827-1301520-000001-7: Job still running while shutting down +2013-08-27 01:14:05,784+0000 INFO RequestHandler Handler(tag: 720, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,784+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,784+0000 INFO RequestHandler Handler(tag: 721, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,784+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-6dztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,784+0000 INFO RequestHandler Handler(tag: 722, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,784+0000 DEBUG swift THREAD_ASSOCIATION jobid=runampl-0eztedel thread=R-42-0-1x2-20-0 host=midway replicationGroup=null +2013-08-27 01:14:05,785+0000 INFO RequestHandler Handler(tag: 723, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,785+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-adztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,785+0000 INFO Cpu 0827-1301520-000001:7 jobTerminated +2013-08-27 01:14:05,785+0000 INFO RequestHandler Handler(tag: 724, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,785+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=7 +2013-08-27 01:14:05,785+0000 INFO Cpu 0827-1301520-000001-8: Job still running while shutting down +2013-08-27 01:14:05,785+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,785+0000 INFO Cpu 0827-1301520-000001:8 jobTerminated +2013-08-27 01:14:05,785+0000 INFO swift END_FAILURE thread=R-42-0-1x2-6-0 tr=runampl +2013-08-27 01:14:05,785+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=8 +2013-08-27 01:14:05,785+0000 DEBUG swift JOB_START jobid=runampl-0eztedel tr=runampl arguments=[10, 0, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run, outdir/xhat_l10000_0001.0020.out, outdir/xhat_l20000_0001.0020.out, obj_outdir/obj_out_l0000_0001.0020.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc, Results/ampl_res_l0000_0001.0020.out, __root__/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat] tmpdir=inference4galaxy-20130827-0113-r1k3cjmc/jobs/0/runampl-0eztedel host=midway +2013-08-27 01:14:05,785+0000 INFO Cpu 0827-1301520-000001-9: Job still running while shutting down +2013-08-27 01:14:05,785+0000 INFO swift END_FAILURE thread=R-42-0-1x2-8-0 tr=runampl +2013-08-27 01:14:05,785+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-fdztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,785+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-ddztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,785+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,785+0000 INFO Cpu 0827-1301520-000001:9 jobTerminated +2013-08-27 01:14:05,785+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-cdztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,785+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=9 +2013-08-27 01:14:05,785+0000 INFO swift END_FAILURE thread=R-42-0-1x2-14-0 tr=runampl +2013-08-27 01:14:05,785+0000 INFO Cpu 0827-1301520-000001-10: Job still running while shutting down +2013-08-27 01:14:05,785+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,785+0000 INFO Cpu 0827-1301520-000001:10 jobTerminated +2013-08-27 01:14:05,785+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-7dztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,785+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=10 +2013-08-27 01:14:05,785+0000 INFO Cpu 0827-1301520-000001-11: Job still running while shutting down +2013-08-27 01:14:05,785+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,785+0000 INFO Cpu 0827-1301520-000001:11 jobTerminated +2013-08-27 01:14:05,785+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=11 +2013-08-27 01:14:05,785+0000 INFO Cpu 0827-1301520-000001-12: Job still running while shutting down +2013-08-27 01:14:05,785+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,785+0000 INFO Cpu 0827-1301520-000001:12 jobTerminated +2013-08-27 01:14:05,785+0000 INFO swift END_FAILURE thread=R-42-0-1-0-6-0 tr=runampl +2013-08-27 01:14:05,785+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=12 +2013-08-27 01:14:05,785+0000 INFO Cpu 0827-1301520-000001-13: Job still running while shutting down +2013-08-27 01:14:05,785+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,785+0000 INFO swift END_FAILURE thread=R-42-0-1-0-2-0 tr=runampl +2013-08-27 01:14:05,785+0000 INFO Cpu 0827-1301520-000001:13 jobTerminated +2013-08-27 01:14:05,785+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=13 +2013-08-27 01:14:05,786+0000 INFO Cpu 0827-1301520-000001-14: Job still running while shutting down +2013-08-27 01:14:05,786+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,786+0000 INFO Cpu 0827-1301520-000001:14 jobTerminated +2013-08-27 01:14:05,786+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=14 +2013-08-27 01:14:05,786+0000 INFO Cpu 0827-1301520-000001-15: Job still running while shutting down +2013-08-27 01:14:05,786+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-bdztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,786+0000 DEBUG Cpu Failed Shutting down worker +2013-08-27 01:14:05,786+0000 INFO swift END_FAILURE thread=R-42-0-1x2-4-0 tr=runampl +2013-08-27 01:14:05,786+0000 INFO Cpu 0827-1301520-000001:15 jobTerminated +2013-08-27 01:14:05,786+0000 DEBUG Cpu ready for work: block=0827-1301520-000001 id=15 +2013-08-27 01:14:05,786+0000 INFO Block Adding short shutdown watchdog: count = 16, workers = 16, now = true +2013-08-27 01:14:05,786+0000 INFO Block Average utilization: 98.76% +2013-08-27 01:14:05,786+0000 INFO CoasterService Shutdown sequence completed +2013-08-27 01:14:05,786+0000 INFO swift END_FAILURE thread=R-42-0-1-0-7-0 tr=runampl +2013-08-27 01:14:05,786+0000 INFO RequestHandler Handler(tag: 725, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,786+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-8dztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,786+0000 INFO swift END_FAILURE thread=R-42-0-1x2-15-0 tr=runampl +2013-08-27 01:14:05,787+0000 INFO RequestHandler Handler(tag: 726, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,787+0000 INFO RemoteLogHandler BLOCK_UTILIZATION id=0827-1301520-000000, u=98.53 +2013-08-27 01:14:05,787+0000 INFO RequestHandler Handler(tag: 727, RLOG) unregistering (send) +2013-08-27 01:14:05,787+0000 INFO RemoteLogHandler BLOCK_SHUTDOWN id=0827-1301520-000001 +2013-08-27 01:14:05,787+0000 INFO RequestHandler Handler(tag: 728, RLOG) unregistering (send) +2013-08-27 01:14:05,787+0000 INFO RequestHandler Handler(tag: 729, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,788+0000 INFO RequestHandler Handler(tag: 730, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,788+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-hdztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,788+0000 INFO RequestHandler Handler(tag: 731, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,788+0000 INFO swift END_FAILURE thread=R-42-0-1-0-5-0 tr=runampl +2013-08-27 01:14:05,788+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-jdztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,788+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-ndztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,788+0000 INFO swift END_FAILURE thread=R-42-0-1-0-9-0 tr=runampl +2013-08-27 01:14:05,788+0000 INFO swift END_FAILURE thread=R-42-0-1x2-2-0 tr=runampl +2013-08-27 01:14:05,789+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-kdztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,789+0000 INFO RequestHandler Handler(tag: 732, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,789+0000 INFO RequestHandler Handler(tag: 733, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,789+0000 INFO swift END_FAILURE thread=R-42-0-1x2-3-0 tr=runampl +2013-08-27 01:14:05,789+0000 INFO RequestHandler Handler(tag: 734, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,789+0000 INFO RequestHandler Handler(tag: 735, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,790+0000 INFO RequestHandler Handler(tag: 736, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,790+0000 INFO RequestHandler Handler(tag: 737, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,790+0000 INFO RequestHandler Handler(tag: 738, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,795+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-mdztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,795+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-udztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,795+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-rdztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,795+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-xdztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,795+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-ldztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,795+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-pdztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,796+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-vdztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,796+0000 INFO RequestHandler Handler(tag: 739, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,796+0000 INFO RequestHandler Handler(tag: 740, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,796+0000 INFO swift END_FAILURE thread=R-42-0-1x2-9-0 tr=runampl +2013-08-27 01:14:05,797+0000 INFO RequestHandler Handler(tag: 741, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,797+0000 INFO swift END_FAILURE thread=R-42-0-1x2-0x2 tr=runampl +2013-08-27 01:14:05,797+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-tdztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,797+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-odztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,797+0000 INFO swift END_FAILURE thread=R-42-0-1-0x3 tr=runampl +2013-08-27 01:14:05,797+0000 INFO swift END_FAILURE thread=R-42-0-1-0-10-0 tr=runampl +2013-08-27 01:14:05,797+0000 INFO swift END_FAILURE thread=R-42-0-1x2-11-0 tr=runampl +2013-08-27 01:14:05,797+0000 INFO swift END_FAILURE thread=R-42-0-1x2-13-0 tr=runampl +2013-08-27 01:14:05,797+0000 INFO swift END_FAILURE thread=R-42-0-1-0-1-0 tr=runampl +2013-08-27 01:14:05,797+0000 INFO swift END_FAILURE thread=R-42-0-1-0-4-0 tr=runampl +2013-08-27 01:14:05,797+0000 INFO RequestHandler Handler(tag: 67, SUBMITJOB) unregistering (send) +2013-08-27 01:14:05,797+0000 INFO swift END_FAILURE thread=R-42-0-1x2-16-0 tr=runampl +2013-08-27 01:14:05,798+0000 INFO RequestHandler Handler(tag: 68, SUBMITJOB) unregistering (send) +2013-08-27 01:14:05,799+0000 INFO GetFileHandler Handler(tag: 568, GET) unregistering (last) +2013-08-27 01:14:05,799+0000 INFO ReadBuffer RB-LR-Handler(tag: 568, GET) de-allocating 8 buffers +2013-08-27 01:14:05,800+0000 INFO RequestHandler Handler(tag: 742, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,801+0000 INFO RequestHandler Handler(tag: 743, JOBSTATUS) unregistering (send) +2013-08-27 01:14:05,801+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-ydztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,801+0000 DEBUG swift APPLICATION_EXCEPTION jobid=runampl-sdztedel - Application exception: Shutting down worker + +2013-08-27 01:14:05,801+0000 INFO swift END_FAILURE thread=R-42-0-1x2-7-0 tr=runampl +2013-08-27 01:14:05,801+0000 INFO swift END_FAILURE thread=R-42-0-1-0-8-0 tr=runampl +2013-08-27 01:14:05,802+0000 INFO RemoteLogHandler BLOCK_UTILIZATION id=0827-1301520-000001, u=98.76 +2013-08-27 01:14:05,802+0000 INFO RequestHandler Handler(tag: 744, RLOG) unregistering (send) +2013-08-27 01:14:05,803+0000 INFO GetFileHandler Handler(tag: 3273, GET) unregistering (last) Added: SwiftApps/swift-galaxy/swift/datlist.txt =================================================================== --- SwiftApps/swift-galaxy/swift/datlist.txt (rev 0) +++ SwiftApps/swift-galaxy/swift/datlist.txt 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,10 @@ +sample.000.txt +sample.001.txt +sample.002.txt +sample.003.txt +sample.004.txt +sample.005.txt +sample.006.txt +sample.007.txt +sample.008.txt +sample.009.txt Added: SwiftApps/swift-galaxy/swift/delog =================================================================== --- SwiftApps/swift-galaxy/swift/delog (rev 0) +++ SwiftApps/swift-galaxy/swift/delog 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1 @@ +rm -rfv *.d *.rlog *.log swift.work *.out outdir xhat_outdir obj_outdir /tmp/swift.work Results /scratch/midway/maheshwari/swift.workdir Property changes on: SwiftApps/swift-galaxy/swift/delog ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/dogftp.sh =================================================================== --- SwiftApps/swift-galaxy/swift/dogftp.sh (rev 0) +++ SwiftApps/swift-galaxy/swift/dogftp.sh 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,16 @@ +#!/bin/bash -x + +#stagein +#eg. globus-url-copy file:///work/01739/ketan/JSC_AdaptiveSchedule/workflow/sample.txt gsiftp://gridftp.stampede.tacc.utexas.edu:2811/scratch/01739/ketan/storage/ + +src=$1 +dest=$2 +token=$3 + +#echo $src > $token +#echo $dest >> $token + +globus-url-copy $src $dest +#ssh -i /home1/01739/ketan/.ssh/id_rsa maheshwari at swift.rcc.uchicago.edu globus-url-copy gsiftp://trestles-dm2.sdsc.edu:2811/home/ketan/storage/$src gsiftp://gridftp.stampede.tacc.utexas.edu:2811/work/01739/ketan/JSC_AdaptiveSchedule/workflow/dir/$dest + +echo $? > $token Property changes on: SwiftApps/swift-galaxy/swift/dogftp.sh ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/dssat.xml =================================================================== --- SwiftApps/swift-galaxy/swift/dssat.xml (rev 0) +++ SwiftApps/swift-galaxy/swift/dssat.xml 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,27 @@ + + Swift - DSSAT + + + /scratch/midway/maheshwari/DSSAT.cloud/DSSAT/dssat-galaxy.sh $njobs $template + + + + + + + + + + + + + + + + + + + + + + Added: SwiftApps/swift-galaxy/swift/edrevised.mod =================================================================== --- SwiftApps/swift-galaxy/swift/edrevised.mod (rev 0) +++ SwiftApps/swift-galaxy/swift/edrevised.mod 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,115 @@ +# ampl model declaration +# V. M. Zavala - MCS/ANL 2012 + +# scenarios +param NS; # number of scenarios +set SCEN := 1..NS; # set of scenarios + +# dispatch horizon +param T; # horizon length +param TH; # simulation horizon (hours) +param dt; # length of time step [hr] +set HORIZON := 0..T-1; # horizon minus one +set TESTTIME:=0..T; # set of test times +param idx_data; # auxiliary parameter +param idx_state; # auxiliary parameter + +# lines +set LIN; # set of lines +param status{LIN}, symbolic; # line status +param snd_bus{LIN}; # sending bus +param rec_bus{LIN}; # receiving bus +param X{LIN}; # reactance - Ohm +param V{LIN}; # voltage drop - kV +param Pmax{LIN}; # maximum line capacity - MW +param install_cost{LIN}; # annualized installation cost $/yr + +# buses +set BUS; # set of buses +param lat_bus{BUS}; # latitude of bus +param lon_bus{BUS}; # longitude of bus +param ref_bus, symbolic; # reference bus + +# generators +set GEN; +param bus_gen{GEN}; # generator bus +param np_cap{GEN}; # name place capacity - MW +param sum_cap{GEN}; # summer capacity - MW +param win_cap{GEN}; # winter capacity - MW +param min_cap{GEN}; # minimum capacity - MW +param fuel{GEN}, symbolic; # type of fuel for generator +param min_hrate{GEN}; # heat rate at minimum capacity - BTU/kWh +param min_power{GEN}; # power at minimum capacity - MW +param max_ur{GEN}; # minimum up ramp - MW +param max_dr{GEN}; # maximum down ramp - MW +param lat_gen{GEN}; # latitude of generation bus +param lon_gen{GEN}; # longitude of generation bus +param gen_cost{GEN}; # generation cost $/MWhr +param Pgen_init{GEN}; # initial conditions generators MW +param clgen_cost{TESTTIME}; # closed-loop generation cost $/MWh + +# fuels +set FUEL; +param Description{FUEL}, symbolic; # fuel description +param HV{FUEL}; # heating value (Mbtu/unit) +param Unitprice{FUEL}; # unit price ($/unit) +param Units{FUEL}, symbolic; # units + +# loads +set TIME; # set of times for loads +set LOAD; # set of loads +param bus_load{LOAD}; # load bus +param loads{TIME,LOAD}; # loads in space and time - MW +param wind_totalmh{SCEN,TESTTIME}; # total wind power - MW + +# wind data +set WIND; +param wind_total{SCEN,TIME}; # total wind power - MW +param bus_wind{WIND}; # wind bus +param wind_share{WIND}; # wind share of total power MW/MW + +# variables +var Pgen{SCEN,TESTTIME,GEN}; # generation levels - MW +var Pload{SCEN,TESTTIME,LOAD}; # load levels - MW +var yuc{TESTTIME,j in GEN} >= 0, <= 1; # ON/OFF Status generators +var slackp{s in SCEN, t in TESTTIME}>=0; # slack - for modeling purposes only +var slackm{s in SCEN, t in TESTTIME}>=0; # slack - for modeling purposes only +var Pgen_initial{GEN}; # initial state for generators - MW + +# params for inference +param fix_x; + +# power flow equations +pfeq{s in SCEN, t in TESTTIME}: + +(sum{i in GEN} Pgen[s,t,i]) + -(sum{i in LOAD} Pload[s,t,i]) + + wind_totalmh[s,t] + = slackp[s,t]-slackm[s,t]; + +# upper bound and lower bounds for generation flows [MW] +Pgenequb{s in SCEN,t in TESTTIME,i in GEN}: Pgen[s,t,i] <= np_cap[i]*yuc[t,i]; +Pgeneqlb{s in SCEN,t in TESTTIME,i in GEN}: Pgen[s,t,i] >= 0; + +Pgenequbinit{i in GEN}: Pgen_initial[i] <= np_cap[i]*yuc[1,i]; +Pgeneqlbinit{i in GEN}: Pgen_initial[i] >= 0; + +# upper and lower bounds on ramps +upramp{s in SCEN,t in HORIZON,i in GEN}: Pgen[s,t+1,i] - Pgen[s,t,i] <= +max_ur[i]; +loramp{s in SCEN,t in HORIZON,i in GEN}: Pgen[s,t,i] - Pgen[s,t+1,i] >= -max_dr[i]; + +upramp0{s in SCEN,i in GEN}: Pgen[s,1,i] - Pgen_initial[i] <= +max_ur[i]; +loramp0{s in SCEN,i in GEN}: Pgen_initial[i] - Pgen[s,1,i] >= -max_dr[i]; + +# time-dependent generation costs +var tot_gen_cost{s in SCEN,t in TESTTIME} = 1e+0*sum{i in GEN} (gen_cost[i]*Pgen[s,t,i]); + +# time-dependent startup/shutdown costs +var tot_start_cost{t in TESTTIME} = 1e+3*(sum{i in GEN} yuc[t,i]); + +# time-dependent slack costs +var tot_slack_cost{s in SCEN,t in TESTTIME} = 1e+4*(slackp[s,t]+slackm[s,t]); + +# cost function +minimize cost: sum{t in TESTTIME} tot_start_cost[t] + + (1/(card(SCEN)))*sum{s in SCEN,t in TESTTIME} tot_gen_cost[s,t] + + (1/(card(SCEN)))*sum{s in SCEN,t in TESTTIME} tot_slack_cost[s,t]; Property changes on: SwiftApps/swift-galaxy/swift/edrevised.mod ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/gftplist.swift =================================================================== --- SwiftApps/swift-galaxy/swift/gftplist.swift (rev 0) +++ SwiftApps/swift-galaxy/swift/gftplist.swift 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,18 @@ +type file; + +app (file _status, file _stdout, file _stderr) stage (string _src, string _dst){ + stage _src _dst @_status stdout=@_stdout stderr=@_stderr; +} + +string src="gsiftp://trestles-dm2.sdsc.edu:2811/home/ketan/storage/"; +string dst="gsiftp://gridftp.stampede.tacc.utexas.edu:2811/scratch/01739/ketan/dest/"; + +string data[] = readData("datlist.txt"); + +foreach d, i in data{ + file status ; + file out ; + file err ; + //trace (@strcat(src, d)); + (status, out, err) = stage (@strcat(src, d), @strcat(dst, d)); +} Added: SwiftApps/swift-galaxy/swift/lungsearch/Consortium_expr_full_pheno_no_affx.csv =================================================================== --- SwiftApps/swift-galaxy/swift/lungsearch/Consortium_expr_full_pheno_no_affx.csv (rev 0) +++ SwiftApps/swift-galaxy/swift/lungsearch/Consortium_expr_full_pheno_no_affx.csv 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,50 @@ 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Cluster,UniGene ID,Alignments,Gene Title,Gene Symbol,Chromosomal Location,Unigene Cluster Type,Ensembl,Entrez Gene,SwissProt,EC,OMIM,RefSeq Protein ID,RefSeq Transcript ID,Gene Ontology Biological Process,Gene Ontology Cellular Component,Gene Ontology Molecular Function,Pathway,InterPro,Annotation Transcript Cluster,Transcript Assignments,Annotation Notes +1007_s_at,U48705mRNA, U48705 /FEATURE=mRNA /DEFINITION=HSU48705 Human receptor tyrosine kinase DDR gene complete cds ,U48705,---,Hs.631988,chr6:30856165-30867931 (+) // 95.63 // p21.33,discoidin domain receptor tyrosine kinase 1 /// microRNA 4640,DDR1 /// MIR4640,chr6p21.3,full length,ENSG00000137332 /// ENSG00000204580 /// ENSG00000215522 /// ENSG00000230456 /// ENSG00000234078,100616237 /// 780,A2ABK8 /// A2ABK9 /// A2ABL0 /// A2ABL1 /// A2ABL2 /// A2ABM8 /// B7Z3A2 /// B8JJ50 /// B8JJ51 /// D6R9C4 /// D6RAJ3 /// D6RB35 /// D6RB82 /// D6RBU7 /// D6RGW5 /// E7EN94 /// E7ENJ2 /// E7EPH4 /// E7EPN2 /// E7EQ23 /// E7EQ30 /// E7ERI6 /// E7ERN0 /// E7ES06 /// E7ESR9 /// E7ETI3 /// E7ETX3 /// E7EUD5 /// E7EUP7 /// E7EVT1 /// E7EVW6 /// E7EX99 /// E7EXB0 /// F5H786 /// F8VYL2 /// H0Y4U0 /// H0Y717 /// H0Y9F4 /// H0YAH6 /// Q08345 /// Q6ZNR9 /// Q96T61 /// Q96T62,EC:2.7.10.1,600408,NP_001189450 /// NP_001189451 /// NP_001189452 /// NP_001945 /// NP_054699 /// NP_054700,NM_00120252 1 /// NM_001202522 /// NM_001202523 /// NM_001954 /// NM_013993 /// NM_013994 /// NR_039783,0001558 // regulation of cell growth // inferred from electronic annotation /// 0001952 // regulation of cell-matrix adhesion // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007566 // embryo implantation // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010715 // regulation of extracellular matrix disassembly // inferred from mutant phenotype /// 001 0715 // regulation of extracellular matrix disassembly // inferred from electronic annotation /// 0014909 // smooth muscle cell migration // inferred from mutant phenotype /// 0014909 // smooth muscle cell migration // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0038063 // collagen-activated tyrosine kinase receptor signaling pathway // inferred from direct assay /// 0038063 // collagen-activated tyrosine kinase receptor signaling pathway // inferred from mutant phenotype /// 0038063 // collagen-activated tyrosine kinase receptor signaling pathway // inferred from electronic annotation /// 0038083 // peptidyl-tyrosine autophosphorylation // inferred from direct assay /// 0043583 // ear development // inferred from electronic annotation /// 0043588 // s kin development // inferred from electronic annotation /// 0044319 // wound healing spreading of cells // inferred from mutant phenotype /// 0044319 // wound healing spreading of cells // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0061302 // smooth muscle cell-matrix adhesion // inferred from mutant phenotype /// 0061302 // smooth muscle cell-matrix adhesion // inferred from electronic annotation,0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inf erred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation,0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // traceable author statement /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from direct assay /// 0005518 // collagen binding // inferred from mutant phenotype /// 0005518 // collagen binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase a ctivity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity transferring phosphorus-containing groups // inferred from electronic annotation /// 0038062 // protein tyrosine kinase collagen receptor activity // inferred from direct assay,---,IPR000421 // Coagulation factor 5/8 C-terminal type domain // 1.4E-24 /// IPR000421 // Coagulation factor 5/8 C-terminal type domain // 1.3E-24 /// IPR000421 // Coagulation factor 5/8 C-terminal type domain // 3.5E-26 /// IPR000719 // Protein kinase catalytic domain // 7.2E-45 /// IPR000719 // Protein kinase catalytic domain // 6.6E-45 /// IPR000719 // Protein kinase catalytic domain // 9.3E-44 /// IPR000719 // Protein kinase catalytic domain // 6.2E-45 /// IPR001245 // Serine-threonine/tyrosine-protein kinase catalytic domain // 6.9E-88 /// IPR001245 // Serine-threonine/tyrosine-protein kinase catalytic domain // 6.4E-88 /// IPR001245 / / Serine-threonine/tyrosine-protein kinase catalytic domain // 3.6E-85 /// IPR001245 // Serine-threonine/tyrosine-protein kinase catalytic domain // 2.4E-86,BC008716(16) BC013400(16) BC070070(16) L11315(16) L20817(16) L57508(16) Z29093(16) ENST00000324771(16) ENST00000454612(16) ENST00000376569(16) ENST00000376568(16) ENST00000376567(16) ENST00000376575(16) ENST00000376570(16) ENST00000452441(16) ENST00000446312(16) ENST00000412329(16) ENST00000449518(16) ENST00000427053(16) ENST00000462241(16) ENST00000415092(16) ENST00000453510(16) ENST00000452093(16) ENST00000548133(16) ENST00000548962(16) ENST00000430933(16) ENST00000429699(16) ENST00000421229(16) ENST00000487780(16) ENST00000454774(16) ENST00000419412(16) ENST00000446697(16) ENST00000552068(16) ENST00000550384(16) ENST00000400492(16) ENST00000400491(16) ENST00000400489(16) ENST00000490712(16) ENST00000400488(16) ENST00000400486(16) ENST00000450117(16) ENST00000550395(16) ENST00000549026(16) ENST00000383377(16) ENST00000 400414(16) ENST00000259875(16) ENST00000468225(16) ENST00000400411(16) ENST00000400410(16) ENST00000416487(16) ENST00000553015(16) ENST00000552721(16) NM_013994(16) NM_001202521(16) NM_001202522(16) NM_013993(16) NM_001954(16) NM_001202523(16),BC008716 // Homo sapiens discoidin domain receptor tyrosine kinase 1 mRNA (cDNA clone MGC:8681 IMAGE:2964574) complete cds. // gb // 16 // --- /// BC013400 // Homo sapiens discoidin domain receptor tyrosine kinase 1 mRNA (cDNA clone MGC:3909 IMAGE:2964574) complete cds. // gb // 16 // --- /// BC070070 // Homo sapiens discoidin domain receptor tyrosine kinase 1 mRNA (cDNA clone MGC:87336 IMAGE:5262509) complete cds. // gb // 16 // --- /// ENST00000259875 // cdna:known chromosome:GRCh37:HSCHR6_MHC_COX:30841734:30857829:1 gene:ENSG00000137332 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000324771 // cdna:known chromosome:GRCh37:6:30848626:30867931:1 gene:ENSG00000204580 gene_biotype :protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000376567 // cdna:known chromosome:GRCh37:6:30856166:30867933:1 gene:ENSG00000204580 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000376568 // cdna:known chromosome:GRCh37:6:30852235:30867930:1 gene:ENSG00000204580 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000376569 // cdna:known chromosome:GRCh37:6:30851846:30867933:1 gene:ENSG00000204580 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000376570 // cdna:known chromosome:GRCh37:6:30851861:30867929:1 gene:ENSG00000204580 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000376575 // cdna:known chromosome:GRCh37:6:30851861:30867929:1 gene:ENSG00000204580 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00 000383377 // cdna:known chromosome:GRCh37:HSCHR6_MHC_COX:30838699:30857829:1 gene:ENSG00000137332 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000400410 // cdna:known chromosome:GRCh37:HSCHR6_MHC_COX:30846060:30857829:1 gene:ENSG00000137332 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000400411 // cdna:known chromosome:GRCh37:HSCHR6_MHC_COX:30842237:30857829:1 gene:ENSG00000137332 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000400414 // cdna:known chromosome:GRCh37:HSCHR6_MHC_COX:30841450:30857829:1 gene:ENSG00000137332 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000400486 // cdna:known chromosome:GRCh37:HSCHR6_MHC_QBL:30845756:30857525:1 gene:ENSG00000215522 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000400488 // cdna:k nown chromosome:GRCh37:HSCHR6_MHC_QBL:30841933:30857525:1 gene:ENSG00000215522 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000400489 // cdna:known chromosome:GRCh37:HSCHR6_MHC_QBL:30841430:30857525:1 gene:ENSG00000215522 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000400491 // cdna:known chromosome:GRCh37:HSCHR6_MHC_QBL:30841146:30857525:1 gene:ENSG00000215522 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000400492 // cdna:known chromosome:GRCh37:HSCHR6_MHC_QBL:30838395:30857525:1 gene:ENSG00000215522 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000412329 // cdna:known chromosome:GRCh37:HSCHR6_MHC_DBB:30839511:30858654:1 gene:ENSG00000230456 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000415092 // cdna:known chromosome:GRC h37:HSCHR6_MHC_DBB:30843048:30858654:1 gene:ENSG00000230456 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000416487 // cdna:known chromosome:GRCh37:HSCHR6_MHC_COX:30854294:30857829:1 gene:ENSG00000137332 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000419412 // cdna:known chromosome:GRCh37:HSCHR6_MHC_MANN:30900854:30912617:1 gene:ENSG00000234078 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000421229 // cdna:known chromosome:GRCh37:HSCHR6_MHC_MANN:30896528:30912617:1 gene:ENSG00000234078 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000427053 // cdna:known chromosome:GRCh37:HSCHR6_MHC_DBB:30842545:30858654:1 gene:ENSG00000230456 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000429699 // cdna:known chromosome:GRCh37:HSCHR6_MHC_MA NN:30896244:30912617:1 gene:ENSG00000234078 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000430933 // cdna:known chromosome:GRCh37:HSCHR6_MHC_MANN:30893493:30912617:1 gene:ENSG00000234078 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000446312 // cdna:known chromosome:GRCh37:6:30851861:30867929:1 gene:ENSG00000204580 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000446697 // cdna:known chromosome:GRCh37:HSCHR6_MHC_MANN:30909082:30912617:1 gene:ENSG00000234078 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000449518 // cdna:known chromosome:GRCh37:HSCHR6_MHC_DBB:30842261:30858654:1 gene:ENSG00000230456 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000450117 // cdna:known chromosome:GRCh37:HSCHR6_MHC_QBL:30853990:30857525:1 gene:EN SG00000215522 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000452093 // cdna:known chromosome:GRCh37:HSCHR6_MHC_DBB:30855119:30858654:1 gene:ENSG00000230456 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000452441 // cdna:known chromosome:GRCh37:6:30852327:30867929:1 gene:ENSG00000204580 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000453510 // cdna:known chromosome:GRCh37:HSCHR6_MHC_DBB:30846871:30858654:1 gene:ENSG00000230456 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000454612 // cdna:known chromosome:GRCh37:6:30850732:30867933:1 gene:ENSG00000204580 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000454774 // cdna:known chromosome:GRCh37:HSCHR6_MHC_MANN:30897031:30912617:1 gene:ENSG00000234078 gene_biotype:protein_coding tr anscript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000462241 // cdna:known chromosome:GRCh37:HSCHR6_MHC_DBB:30843038:30858654:1 gene:ENSG00000230456 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 16 // --- /// ENST00000468225 // cdna:known chromosome:GRCh37:HSCHR6_MHC_COX:30842227:30857829:1 gene:ENSG00000137332 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 16 // --- /// ENST00000487780 // cdna:known chromosome:GRCh37:HSCHR6_MHC_MANN:30897021:30912617:1 gene:ENSG00000234078 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 16 // --- /// ENST00000490712 // cdna:known chromosome:GRCh37:HSCHR6_MHC_QBL:30841923:30857525:1 gene:ENSG00000215522 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 16 // --- /// ENST00000548133 // cdna:known chromosome:GRCh37:HSCHR6_MHC_DBB:30842566:30858650:1 gene:ENSG00000230456 gene_biotype:protein_cod ing transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000548962 // cdna:known chromosome:GRCh37:HSCHR6_MHC_DBB:30842566:30858650:1 gene:ENSG00000230456 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000549026 // cdna:known chromosome:GRCh37:HSCHR6_MHC_QBL:30841451:30857521:1 gene:ENSG00000215522 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000550384 // cdna:known chromosome:GRCh37:HSCHR6_MHC_MANN:30896549:30912613:1 gene:ENSG00000234078 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000550395 // cdna:known chromosome:GRCh37:HSCHR6_MHC_QBL:30841451:30857521:1 gene:ENSG00000215522 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000552068 // cdna:known chromosome:GRCh37:HSCHR6_MHC_MANN:30896549:30912613:1 gene:ENSG00000234078 gene_biotype:protein_coding transcript_bi otype:protein_coding // ensembl // 16 // --- /// ENST00000552721 // cdna:known chromosome:GRCh37:HSCHR6_MHC_COX:30841755:30857825:1 gene:ENSG00000137332 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000553015 // cdna:known chromosome:GRCh37:HSCHR6_MHC_COX:30841755:30857825:1 gene:ENSG00000137332 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// L11315 // Homo sapiens receptor tyrosine kinase mRNA complete cds. // gb // 16 // --- /// L20817 // Homo sapiens tyrosine protein kinase (CAK) gene complete cds. // gb // 16 // --- /// L57508 // Homo sapiens Cak receptor kinase mRNA complete cds. // gb // 16 // --- /// NM_001202521 // Homo sapiens discoidin domain receptor tyrosine kinase 1 (DDR1) transcript variant 4 mRNA. // refseq // 16 // --- /// NM_001202522 // Homo sapiens discoidin domain receptor tyrosine kinase 1 (DDR1) transcript variant 5 mRNA. // refseq // 16 // --- /// NM_0012 02523 // Homo sapiens discoidin domain receptor tyrosine kinase 1 (DDR1) transcript variant 6 mRNA. // refseq // 16 // --- /// NM_001954 // Homo sapiens discoidin domain receptor tyrosine kinase 1 (DDR1) transcript variant 1 mRNA. // refseq // 16 // --- /// NM_013993 // Homo sapiens discoidin domain receptor tyrosine kinase 1 (DDR1) transcript variant 2 mRNA. // refseq // 16 // --- /// NM_013994 // Homo sapiens discoidin domain receptor tyrosine kinase 1 (DDR1) transcript variant 3 mRNA. // refseq // 16 // --- /// Z29093 // H.sapiens EDDR1 gene for receptor tyrosine kinase. // gb // 16 // ---,AK291621 // gb // 8 // Cross Hyb Matching Probes /// ENST00000418800 // ensembl // 8 // Cross Hyb Matching Probes /// ENST00000361741 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000451954 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000548853 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000550666 // ensembl // 2 // Cross Hyb Matching Probes /// ENS T00000547608 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000548693 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000549968 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000552434 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000550341 // ensembl // 2 // Cross Hyb Matching Probes +1053_at,M87338, M87338 /FEATURE= /DEFINITION=HUMA1SBU Human replication factor C 40-kDa subunit (A1) mRNA complete cds ,M87338,---,Hs.647062,chr7:73646002-73668732 (-) // 70.86 // q11.23,replication factor C (activator 1) 2 40kDa,RFC2,chr7q11.23,full length,ENSG00000049541 /// ENSG00000261911,5982,B5BUD2 /// F8WC37 /// F8WDC9 /// H0YEY3 /// H7C596 /// H7C5A0 /// H7C5G4 /// H7C5P1 /// H7C5P4 /// H7C5Q7 /// H7C5S7 /// P35250 /// Q75MT5,---,600404,NP_002905 /// NP_852136,NM_002914 /// NM_181471,0000075 // cell cycle checkpoint // traceable author statement /// 0000084 // S phase of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0000722 // telomere maintenance via recombination // traceable author statement /// 0000723 // telomere maintenance // traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006260 // DNA replication // inferred from electronic annotation /// 00 06271 // DNA strand elongation involved in DNA replication // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006297 // nucleotide-excision repair DNA gap filling // traceable author statement /// 0015979 // photosynthesis // inferred from electronic annotation /// 0015995 // chlorophyll biosynthetic process // inferred from electronic annotation /// 0032201 // telomere maintenance via semi-conservative replication // traceable author statement,0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005663 // DNA replication factor C complex // inferred from direct assay,0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0 005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // traceable author statement /// 0016851 // magnesium chelatase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation,DNA_replication_Reactome // GenMAPP,IPR000523 // Magnesium chelatase ChlI subunit // 2.3E-8 /// IPR000606 // Helicase domain viral-like // 2.3E-8 /// IPR003959 // ATPase AAA-type core // 1.8E-16 /// IPR013748 // Replication factor C C-terminal domain // 8.0E-31 /// IPR013748 // Replication factor C C-terminal domain // 1.2E-30 /// IPR013748 // Replication factor C C-terminal domain // 1.9E-21,AB451243(9) BC002813(13) BT007058(9) ENST00000055077(13) ENST00000352131(13) ENST00000485545(13) ENST00000493156(13) ENST00000497430(9) ENST00000570503(13) ENST00000573234(13) ENST00000576165(9) ENST00000576280(13) ENST00000576 908(13) NM_002914(13) NM_181471(13),AB451243 // Homo sapiens RFC2 mRNA for replication factor C 2 isoform 1 complete cds clone: FLJ08043AAAN. // gb // 9 // --- /// BC002813 // Homo sapiens replication factor C (activator 1) 2 40kDa mRNA (cDNA clone MGC:3665 IMAGE:3637774) complete cds. // gb // 13 // --- /// BT007058 // Homo sapiens replication factor C (activator 1) 2 40kDa mRNA complete cds. // gb // 9 // --- /// ENST00000055077 // cdna:known chromosome:GRCh37:7:73645867:73668774:-1 gene:ENSG00000049541 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 13 // --- /// ENST00000352131 // cdna:known chromosome:GRCh37:7:73645829:73668719:-1 gene:ENSG00000049541 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 13 // --- /// ENST00000485545 // cdna:known chromosome:GRCh37:7:73646104:73654337:-1 gene:ENSG00000049541 gene_biotype:protein_coding transcript_biotype:nonsense_mediated_decay // ensembl // 13 // --- /// ENST0000 0493156 // cdna:known chromosome:GRCh37:7:73646004:73668719:-1 gene:ENSG00000049541 gene_biotype:protein_coding transcript_biotype:nonsense_mediated_decay // ensembl // 13 // --- /// ENST00000497430 // cdna:known chromosome:GRCh37:7:73646434:73657576:-1 gene:ENSG00000049541 gene_biotype:protein_coding transcript_biotype:nonsense_mediated_decay // ensembl // 9 // --- /// ENST00000570503 // cdna:known chromosome:GRCh37:HG1257_PATCH:73696098:73718813:-1 gene:ENSG00000261911 gene_biotype:protein_coding transcript_biotype:nonsense_mediated_decay // ensembl // 13 // --- /// ENST00000573234 // cdna:known chromosome:GRCh37:HG1257_PATCH:73695923:73718813:-1 gene:ENSG00000261911 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 13 // --- /// ENST00000576165 // cdna:known chromosome:GRCh37:HG1257_PATCH:73696528:73707670:-1 gene:ENSG00000261911 gene_biotype:protein_coding transcript_biotype:nonsense_mediated_decay // ensembl // 9 // --- /// ENST00000576280 // c dna:known chromosome:GRCh37:HG1257_PATCH:73696198:73704431:-1 gene:ENSG00000261911 gene_biotype:protein_coding transcript_biotype:nonsense_mediated_decay // ensembl // 13 // --- /// ENST00000576908 // cdna:known chromosome:GRCh37:HG1257_PATCH:73695961:73718868:-1 gene:ENSG00000261911 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 13 // --- /// GENSCAN00000019182 // cdna:genscan chromosome:GRCh37:7:73646419:73668713:-1 transcript_biotype:protein_coding // ensembl // 9 // --- /// GENSCAN00000049388 // cdna:genscan chromosome:GRCh37:HG1257_PATCH:73696513:73718807:-1 transcript_biotype:protein_coding // ensembl // 9 // --- /// M87338 // Human replication factor C 40-kDa subunit (A1) mRNA complete cds. // gb // 16 // --- /// NM_002914 // Homo sapiens replication factor C (activator 1) 2 40kDa (RFC2) transcript variant 2 mRNA. // refseq // 13 // --- /// NM_181471 // Homo sapiens replication factor C (activator 1) 2 40kDa (RFC2) transcript varian t 1 mRNA. // refseq // 13 // ---,ENST00000470266 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000494019 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000480432 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000570552 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000572571 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000576356 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000415505 // ensembl // 1 // Cross Hyb Matching Probes +117_at,X51757cds,X51757 /FEATURE=cds /DEFINITION=HSP70B Human heat-shock protein HSP70B' gene,X51757,---,Hs.654614,chr1:161494448-161496380 (+) // 99.59 // q23.3 /// chr1:161576080-161578007 (+) // 98.03 // q23.3,heat shock 70kDa protein 6 (HSP70B'),HSPA6,chr1q23,full length,ENSG00000173110 /// ENSG00000225217,3310,B2R6X5 /// B3KSM6 /// B4DHP5 /// P17066 /// Q53FC7,---,140555,NP_002146,NM_002155,0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // traceable author statement,0008180 // signalosome // inferred from direct assay,0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation,---,IPR004753 // Cell shape determining protein MreB/Mrl // 2.9E-19 /// IPR004753 // Cell shape determining protein MreB/Mrl // 1.8E-19 /// IPR013126 // Heat shock protein 70 family // 3.7E-276 /// IPR013126 // Heat shock protein 70 family // 2.0E-256,AK29521 2(16) BC035665(16) ENST00000309758(16) ENST00000545155(16) NM_002155(16),AK295212 // Homo sapiens cDNA FLJ51847 complete cds highly similar to Heat shock 70 kDa protein 6. // gb // 16 // --- /// BC035665 // Homo sapiens heat shock 70kDa protein 6 (HSP70B') mRNA (cDNA clone MGC:46216 IMAGE:5723718) complete cds. // gb // 16 // --- /// ENST00000309758 // cdna:known chromosome:GRCh37:1:161494036:161496681:1 gene:ENSG00000173110 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000445535 // cdna:pseudogene chromosome:GRCh37:1:161576081:161578007:1 gene:ENSG00000225217 gene_biotype:pseudogene transcript_biotype:unprocessed_pseudogene // ensembl // 9 // --- /// ENST00000545155 // cdna:known chromosome:GRCh37:1:161494335:161496582:1 gene:ENSG00000173110 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// GENSCAN00000030321 // cdna:genscan chromosome:GRCh37:1:161399952:161496380:1 transcript_bioty pe:protein_coding // ensembl // 16 // --- /// GENSCAN00000031598 // cdna:genscan chromosome:GRCh37:1:161576081:161578007:1 transcript_biotype:protein_coding // ensembl // 9 // --- /// NM_002155 // Homo sapiens heat shock 70kDa protein 6 (HSP70B') (HSPA6) mRNA. // refseq // 16 // --- /// NR_024151 // Homo sapiens heat shock 70kDa protein 7 (HSP70B) (HSPA7) non-coding RNA. // refseq // 9 // ---,--- +121_at,X69699,X69699 /FEATURE= /DEFINITION=HSPAX8A H.sapiens Pax8 mRNA,X69699,---,Hs.469728,chr2:113974939-114036488 (-) // 98.3 // q13,paired box 8,PAX8,chr2q13,full length,ENSG00000125618,7849,G3V3F3 /// G3V463 /// H0YJD1 /// H0YJZ5 /// Q06710,---,167415 /// 218700,NP_003457 /// NP_039246 /// NP_039247 /// NP_054698,NM_003466 /// NM_013951 /// NM_013952 /// NM_013953 /// NM_013992,0001655 // urogenital system development // inferred from sequence or structural similarity /// 0001655 // urogenital system development // inferred from electronic annotation /// 0001656 // metanephros development // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from expression pattern /// 0001822 // kidney development // inferred from expression pattern /// 0001823 // mesonephros development // inferred from sequence or structural similarity /// 0001823 // mesonephros development // inferred from electronic annotation /// 0003337 // mesenchymal to epithelial transition involved in metanephros morphogenesis // inferred from expression pattern /// 0006351 // transcription DNA-dependent // inferred from direct assay /// 0006351 // transcription DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription DNA-dependent // traceable author statement /// 0006355 // regulation of transcription DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from expression pattern /// 0007417 // central nervous system development // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030878 // thyroid gland development // inferred from expression pattern /// 0030878 // thyroid gland devel opment // inferred from mutant phenotype /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0039003 // pronephric field specification // inferred from sequence or structural similarity /// 0039003 // pronephric field specification // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // inferred from sequence or structural similarity /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from sequence or structural similarity /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0045893 // positive regulation of transcription DNA-dependent // inferred from direct assay /// 0045893 // positive regulation of transcription DNA-dependent // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription DNA-dependent // inferred from electronic annotation /// 0045944 / / positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048793 // pronephros development // inferred from sequence or structural similarity /// 0048793 // pronephros development // inferred from electronic annotation /// 0071371 // cellular response to gonadotropin stimulus // inferred from direct assay /// 0071599 // otic vesicle development // inferred from expression pattern /// 0072050 // S-shaped body morphogenesis // inferred from electronic annotation /// 0072073 // kidney epithelium development // inferred from electronic annotation /// 0072108 // positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis // inferred from sequence or structural similarity /// 0072108 // positive regulation of mesenchymal to epithelial transition involved in metanephros morpho genesis // inferred from electronic annotation /// 0072164 // mesonephric tubule development // inferred from electronic annotation /// 0072205 // metanephric collecting duct development // inferred from electronic annotation /// 0072207 // metanephric epithelium development // inferred from expression pattern /// 0072221 // metanephric distal convoluted tubule development // inferred from sequence or structural similarity /// 0072221 // metanephric distal convoluted tubule development // inferred from electronic annotation /// 0072278 // metanephric comma-shaped body morphogenesis // inferred from expression pattern /// 0072284 // metanephric S-shaped body morphogenesis // inferred from expression pattern /// 0072289 // metanephric nephron tubule formation // inferred from sequence or structural similarity /// 0072289 // metanephric nephron tubule formation // inferred from electronic annotation /// 0072305 // negative regulation of mesenchymal stem cell apoptotic process i nvolved in metanephric nephron morphogenesis // inferred from sequence or structural similarity /// 0072305 // negative regulation of mesenchymal stem cell apoptotic process involved in metanephric nephron morphogenesis // inferred from electronic annotation /// 0072307 // regulation of metanephric nephron tubule epithelial cell differentiation // inferred from sequence or structural similarity /// 0072307 // regulation of metanephric nephron tubule epithelial cell differentiation // inferred from electronic annotation /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from sequence or structural similarity /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 1900212 // negative regulation of mesenchymal cell apoptotic process involved in metanephros development // inferred from sequence or structural similarity /// 1900215 // negative regulation of ap optotic process involved in metanephric collecting duct development // inferred from sequence or structural similarity /// 1900218 // negative regulation of apoptotic process involved in metanephric nephron tubule development // inferred from sequence or structural similarity /// 2000594 // positive regulation of metanephric DCT cell differentiation // inferred from sequence or structural similarity /// 2000594 // positive regulation of metanephric DCT cell differentiation // inferred from electronic annotation /// 2000611 // positive regulation of thyroid hormone generation // inferred from mutant phenotype /// 2000611 // positive regulation of thyroid hormone generation // inferred from electronic annotation /// 2000612 // regulation of thyroid-stimulating hormone secretion // inferred from mutant phenotype,0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from sequence or s tructural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay,0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from mutant phenotype /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0004996 // thyroid-stimulating hormone receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0044212 // tr anscription regulatory region DNA binding // inferred from electronic annotation,---,IPR001523 // Paired domain // 1.4E-75 /// IPR001523 // Paired domain // 1.1E-75 /// IPR001523 // Paired domain // 2.2E-75 /// IPR001523 // Paired domain // 5.5E-75 /// IPR022130 // Paired-box protein 2 C-terminal // 7.5E-53,BC001060(15) ENST00000263335(14) ENST00000348715(14) ENST00000397647(14) ENST00000429538(14) NM_003466(14) NM_013952(14) NM_013953(14) NM_013992(14),AK096795 // Homo sapiens cDNA FLJ39476 fis clone PROST2013260. // gb // 14 // --- /// BC001060 // Homo sapiens paired box 8 mRNA (cDNA clone MGC:2141 IMAGE:2963877) complete cds. // gb // 15 // --- /// ENST00000263335 // cdna:known chromosome:GRCh37:2:113973574:114036488:-1 gene:ENSG00000125618 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 14 // --- /// ENST00000348715 // cdna:known chromosome:GRCh37:2:113973574:114036488:-1 gene:ENSG00000125618 gene_biotype:protein_coding transcript_biotype:p rotein_coding // ensembl // 14 // --- /// ENST00000397647 // cdna:known chromosome:GRCh37:2:113973574:114036488:-1 gene:ENSG00000125618 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 14 // --- /// ENST00000429538 // cdna:known chromosome:GRCh37:2:113973574:114036527:-1 gene:ENSG00000125618 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 14 // --- /// NM_003466 // Homo sapiens paired box 8 (PAX8) transcript variant PAX8A mRNA. // refseq // 14 // --- /// NM_013952 // Homo sapiens paired box 8 (PAX8) transcript variant PAX8C mRNA. // refseq // 14 // --- /// NM_013953 // Homo sapiens paired box 8 (PAX8) transcript variant PAX8D mRNA. // refseq // 14 // --- /// NM_013992 // Homo sapiens paired box 8 (PAX8) transcript variant PAX8E mRNA. // refseq // 14 // ---,AK124991 // gb // 3 // Cross Hyb Matching Probes /// GENSCAN00000041931 // ensembl // 1 // Cross Hyb Matching Probes +1255_g_at,L36861expanded_cds, L36861 /FEATURE=expanded_cds /DEFINITION=HUMGCAPB Homo sapiens guanylate cyclase activating protein (GCAP) gene exons 1-4 complete cds ,L36861,---,Hs.92858,chr6:42140941-42147792 (+) // 90.58 // p21.1,guanylate cyclase activator 1A (retina),GUCA1A,chr6p21.1,full length,ENSG00000048545,2978,A6NIT3 /// B2R9P6 /// P43080,---,600364 /// 602093,NP_000400,NM_000409,0007165 // signal transduction // non-traceable author statement /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // traceable author statement /// 0050896 // response to stimulus // inferred from electronic annotation,0016020 // membrane // inferred from electronic annotation,0005509 // calcium ion binding // inferred from electronic annotation /// 0008048 // calcium sensitive guanylate cyclase activator activity // traceable author statement,---,IPR018248 // EF-hand // 1.0E-10 /// IPR018248 // EF-hand // 3.0E-10 /// IPR018248 // EF- hand // 1.1E-10 /// IPR018248 // EF-hand // 6.1E-10 /// IPR019577 // SPARC/Testican calcium-binding domain // 1.1E-8,AK125780(16) BC031663(16) ENST00000053469(16) ENST00000372958(16) ENST00000372965(16) ENST00000394237(16) NM_000409(16),AK125780 // Homo sapiens cDNA FLJ43792 fis clone TESTI2053621 highly similar to Guanylyl cyclase-activating protein 1. // gb // 16 // --- /// BC031663 // Homo sapiens guanylate cyclase activator 1A (retina) mRNA (cDNA clone MGC:34591 IMAGE:5172128) complete cds. // gb // 16 // --- /// ENST00000053469 // cdna:known chromosome:GRCh37:6:42123174:42147794:1 gene:ENSG00000048545 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000372958 // cdna:known chromosome:GRCh37:6:42141029:42147787:1 gene:ENSG00000048545 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000372965 // cdna:known chromosome:GRCh37:6:42123144:42147790:1 gene:ENSG00000048545 gene_bio type:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000394237 // cdna:known chromosome:GRCh37:6:42123184:42147792:1 gene:ENSG00000048545 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// NM_000409 // Homo sapiens guanylate cyclase activator 1A (retina) (GUCA1A) mRNA. // refseq // 16 // ---,--- +1294_at,L13852, L13852 /FEATURE= /DEFINITION=HUME1URP Homo sapiens ubiquitin-activating enzyme E1 related protein mRNA complete cds ,L13852,---,Hs.16695,chr3:49842639-49851423 (-) // 95.09 // p21.31,ubiquitin-like modifier activating enzyme 7,UBA7,chr3p21,full length,ENSG00000182179,7318,P41226,---,191325,NP_003326,NM_003335,0006464 // cellular protein modification process // inferred from direct assay /// 0006464 // cellular protein modification process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019941 // modification-dependent protein catabolic process // inferred from electronic annotation /// 0032020 // ISG15-protein conjugation // inferred from direct assay /// 0032020 // ISG15-protein conjugation // inferred from electronic annotation /// 0032480 // negative regulation of type I interferon production // traceabl e author statement /// 0045087 // innate immune response // traceable author statement,0005829 // cytosol // traceable author statement,0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008641 // small protein activating enzyme activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019782 // ISG15 activating enzyme activity // inferred from direct assay /// 0019782 // ISG15 activating enzyme activity // inferred from electronic annotation,Proteasome_Degradation // GenMAPP,IPR000127 // Ubiquitin-activating enzyme repeat // 7.0E-10 /// IPR000127 // Ubiquitin-activating enzyme repeat // 1.1E-28 /// IPR000594 // UBA/THIF-type NAD/FAD binding fold // 3.9E-22 /// IPR000594 // UBA/THIF-type NAD/FAD binding fold // 4.6E-37 /// IPR018965 // Ubiquitin-activa ting enzyme e1 C-terminal // 1.9E-30 /// IPR019572 // Ubiquitin-activating enzyme // 1.2E-18,BC006378(16) BT007026(12) ENST00000333486(16) ENST00000497908(11) L13852(16) NM_003335(16),BC006378 // Homo sapiens ubiquitin-like modifier activating enzyme 7 mRNA (cDNA clone MGC:12713 IMAGE:4299266) complete cds. // gb // 16 // --- /// BT007026 // Homo sapiens ubiquitin-activating enzyme E1-like mRNA complete cds. // gb // 12 // --- /// ENST00000333486 // cdna:known chromosome:GRCh37:3:49842640:49851379:-1 gene:ENSG00000182179 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000497908 // cdna:known chromosome:GRCh37:3:49842657:49843723:-1 gene:ENSG00000182179 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 11 // --- /// GENSCAN00000020140 // cdna:genscan chromosome:GRCh37:3:49843326:49893886:-1 transcript_biotype:protein_coding // ensembl // 9 // --- /// L13852 // Homo sapiens ubiquitin-activating enzy me E1 related protein mRNA complete cds. // gb // 16 // --- /// NM_003335 // Homo sapiens ubiquitin-like modifier activating enzyme 7 (UBA7) mRNA. // refseq // 16 // ---,--- +1316_at,X55005mRNA, X55005 /FEATURE=mRNA /DEFINITION=HSCERBAR Homo sapiens mRNA for thyroid hormone receptor alpha 1 THRA1 (c-erbA-1 gene) ,X55005,---,Hs.724,chr17:38219155-38246289 (+) // 97.54 // q21.1,thyroid hormone receptor alpha,THRA,chr17q11.2,full length,ENSG00000126351,7067,A8K206 /// B6ZGR6 /// P10827 /// P20393 /// Q59FW3 /// Q6FH41 /// Q6LDR0,---,190120 /// 614450,NP_001177847 /// NP_001177848 /// NP_003241 /// NP_955366,NM_001190918 /// NM_001190919 /// NM_003250 /// NM_199334,0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006351 // transcription DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay // / 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // inferred from direct assay /// 0010467 // gene expression // traceable author statement /// 0010871 // negative regulation of receptor biosynthetic process // inferred from mutant phenotype /// 0017055 // negative regulation of RNA polymerase II transcriptional preinitiation complex assembly // inferred from direct assay /// 0030522 // intracellular receptor mediated signaling pathway // traceable author statement /// 0034144 // negative regulation of toll-like receptor 4 signaling pathway // inferred from mutant phenotype /// 0043401 // steroid hormone mediated signaling pathway // inferred from electronic annotation /// 0043401 // steroid hormone mediated signaling pathway // traceable author statement /// 0045892 // negative regulation of transcription DNA-dependent // inferred from direct assay /// 0071222 // cellular response to lipopolysaccharide // inferred from mutant phenotype /// 2000143 // negative regulation of transcription initiation DNA-dependent // inferred from direct assay /// 2000189 // positive regulation of cholesterol homeostasis // inferred from direct assay,0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // inferred from direct assay,0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone recep tor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity // traceable author statement /// 0004887 // thyroid hormone receptor activity // inferred from direct assay /// 0004887 // thyroid hormone receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017025 // TBP-class protein binding // inferred from direct assay /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0043565 // sequen ce-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070324 // thyroid hormone binding // inferred from direct assay /// 0070324 // thyroid hormone binding // inferred from physical interaction,Nuclear_Receptors // GenMAPP,IPR000536 // Nuclear hormone receptor ligand-binding core // 2.7E-37 /// IPR001628 // Zinc finger nuclear hormone receptor-type // 2.1E-33,AB209346(13) ENST00000450525(13) NM_199334(12),AB209346 // Homo sapiens mRNA for thyroid hormone receptor alpha isoform 1 variant protein. // gb // 13 // --- /// ENST00000450525 // cdna:known chromosome:GRCh37:17:38219152:38248880:1 gene:ENSG00000126351 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 13 // --- /// NM_199334 // Homo sapiens thyroid hormone receptor alpha (THRA) transcript variant 1 mRNA. // refseq // 12 // ---,BC008851 // gb // 8 // Cross Hyb Matching Probes +1320_at,X79510cds,X79510 /FEATURE=cds /DEFINITION=HSPTPD1 H.sapiens mRNA for protein-tyrosine-phosphatase D1,X79510,---,Hs.437040,chr14:88934480-89016761 (-) // 99.89 // q31.3,protein tyrosine phosphatase non-receptor type 21,PTPN21,chr14q31.3,full length,ENSG00000070778,11099,G3V1Q9 /// G3V3S6 /// H0YJ59 /// Q16825,EC:3.1.3.48,603271,NP_008970,NM_007039,0006470 // protein dephosphorylation // traceable author statement /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // traceable author statement /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation,0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005856 // cytoskeleton // traceable author statement,0004721 // phosphoprotein phosphatase activity // inferr ed from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation,---,IPR000242 // Protein-tyrosine phosphatase receptor/non-receptor type // 1.2E-77 /// IPR000242 // Protein-tyrosine phosphatase receptor/non-receptor type // 4.0E-17 /// IPR018979 // FERM N-terminal // 7.6E-21 /// IPR018979 // FERM N-terminal // 1.4E-8 /// IPR018980 // FERM C-terminal PH-like domain // 4.4E-20 /// IPR019748 // FERM central domain // 3.1E-25,BC143846(16) BC143847(16) ENST00000328736(16) ENST00000536337(16) ENST00000553531(9) ENST00000554270(16) ENST00000556564(16) NM_007039(16),BC143846 // Homo sapiens cDNA clone IMAGE:9052361 containing frame-shift errors. // gb_htc // 16 // --- /// BC143847 // Homo sapi ens cDNA clone IMAGE:9052362. // gb // 16 // --- /// ENST00000328736 // cdna:known chromosome:GRCh37:14:88932122:89016966:-1 gene:ENSG00000070778 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000536337 // cdna:known chromosome:GRCh37:14:88934299:89016874:-1 gene:ENSG00000070778 gene_biotype:protein_coding transcript_biotype:nonsense_mediated_decay // ensembl // 16 // --- /// ENST00000553531 // cdna:putative chromosome:GRCh37:14:88934114:88935960:-1 gene:ENSG00000070778 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 9 // --- /// ENST00000554270 // cdna:known chromosome:GRCh37:14:88934299:89016874:-1 gene:ENSG00000070778 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 16 // --- /// ENST00000556564 // cdna:known chromosome:GRCh37:14:88932125:89021077:-1 gene:ENSG00000070778 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// GENSCAN00 000007110 // cdna:genscan chromosome:GRCh37:14:88934431:89021018:-1 transcript_biotype:protein_coding // ensembl // 9 // --- /// NM_007039 // Homo sapiens protein tyrosine phosphatase non-receptor type 21 (PTPN21) mRNA. // refseq // 16 // ---,--- +1405_i_at,M21121, M21121 /FEATURE= /DEFINITION=HUMTCSM Human T cell-specific protein (RANTES) mRNA complete cds ,M21121,---,Hs.514821,chr17:34198526-34207330 (-) // 57.16 // q12,chemokine (C-C motif) ligand 5,CCL5,chr17q11.2-q12,full length,ENSG00000161570,6352,B2R5J8 /// D0EI67 /// P13501,---,187011,NP_002976,NM_002985,0000165 // MAPK cascade // inferred from mutant phenotype /// 0002407 // dendritic cell chemotaxis // traceable author statement /// 0002544 // chronic inflammatory response // inferred from electronic annotation /// 0002548 // monocyte chemotaxis // inferred by curator /// 0002676 // regulation of chronic inflammatory response // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006816 // calcium ion transport // inferred from direct assay /// 0006874 // cellular calcium ion homeostasis // inferred from direct assay /// 0006887 // exocytosis // inferred from direct assay /// 0006935 // chemotaxis // non-tra ceable author statement /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from direct assay /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // inferred from direct assay /// 0007267 // cell-cell signaling // inferred from direct assay /// 0007568 // aging // inferred from electronic annotation /// 0009615 // response to virus // traceable author statement /// 0009615 // response to virus // inferred from electronic annotation /// 0009617 // response to bacterium // inferred from electronic annotation /// 0009636 // response to toxin // inferred from direct assay /// 0009651 // response to salt stress // inferred from electronic annotation /// 0010535 // positive regulation of activation of JAK2 kinase activity // traceable author statement /// 0010628 // positive regulatio n of gene expression // inferred from electronic annotation /// 0010759 // positive regulation of macrophage chemotaxis // inferred from direct assay /// 0010820 // positive regulation of T cell chemotaxis // inferred from direct assay /// 0010820 // positive regulation of T cell chemotaxis // inferred from electronic annotation /// 0014068 // positive regulation of phosphatidylinositol 3-kinase cascade // inferred from direct assay /// 0014068 // positive regulation of phosphatidylinositol 3-kinase cascade // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0014823 // response to activity // inferred from electronic annotation /// 0014911 // positive regulation of smooth muscle cell migration // inferred from direct assay /// 0018894 // dibenzo-p-dioxin metabolic process // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0031269 // pseudopodium assembly // inferred from electronic annotation /// 0031328 // positive regulation of cellular biosynthetic process // inferred from direct assay /// 0031584 // activation of phospholipase D activity // inferred from direct assay /// 0031622 // positive regulation of fever generation // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from direct assay /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032868 // response to insulin stimulus // inferred from electronic annotation /// 0033634 // positive regulation of cell-cell adhesion mediated by integrin // inferred from direct assay /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0034112 // positive regulation of homotypic cell-cell adhesion // inferred from direct assay /// 003434 1 // response to interferon-gamma // inferred from electronic annotation /// 0034612 // response to tumor necrosis factor // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // inferred from direct assay /// 0042119 // neutrophil activation // inferred from direct assay /// 0042327 // positive regulation of phosphorylation // inferred from direct assay /// 0042493 // response to drug // inferred from electronic annotation /// 0042531 // positive regulation of tyrosine phosphorylation of STAT protein // inferred from direct assay /// 0043491 // protein kinase B signaling cascade // inferred from mutant phenotype /// 0043526 // neuroprotection // inferred from electronic annotation /// 0043623 // cellular protein complex assembly // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0043922 // negative regulation by host of viral transcription // inferred from direct a ssay /// 0044344 // cellular response to fibroblast growth factor stimulus // inferred from expression pattern /// 0045070 // positive regulation of viral genome replication // traceable author statement /// 0045071 // negative regulation of viral genome replication // inferred from direct assay /// 0045089 // positive regulation of innate immune response // traceable author statement /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // inferred from direct assay /// 0045948 // positive regulation of translational initiation // non-traceable author statement /// 004 6427 // positive regulation of JAK-STAT cascade // traceable author statement /// 0046470 // phosphatidylcholine metabolic process // inferred from electronic annotation /// 0048245 // eosinophil chemotaxis // inferred from direct assay /// 0048246 // macrophage chemotaxis // traceable author statement /// 0048247 // lymphocyte chemotaxis // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from direct assay /// 0050667 // homocysteine metabolic process // inferred from electronic annotation /// 0050863 // regulation of T cell activation // inferred from direct assay /// 0050904 // diapedesis // inferred from electronic annotation /// 0050918 // positive chemotaxis // inferred from direct assay /// 0051262 // protein tetramerization // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from electronic annotation /// 0051928 // positive regulation of calcium ion transpo rt // inferred from direct assay /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0060754 // positive regulation of mast cell chemotaxis // inferred from electronic annotation /// 0070098 // chemokine-mediated signaling pathway // traceable author statement /// 0070100 // negative regulation of chemokine-mediated signaling pathway // inferred from direct assay /// 0070233 // negative regulation of T cell apoptotic process // inferred from direct assay /// 0070234 // positive regulation of T cell apoptotic process // inferred from direct assay /// 0070723 // response to cholesterol // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071307 // cellular response to vitamin K // inferred from electronic annotation /// 0071315 // cellular response to morphine // inferred from electronic annotation /// 0071345 // cellular response to cytokine stimulus // inferred from electronic annotation /// 0071346 // cellular response to interferon-gamma // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from electronic annotation /// 0071361 // cellular response to ethanol // inferred from electronic annotation /// 0071403 // cellular response to high density lipoprotein particle stimulus // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic compound // inferred from direct assay /// 0071448 // cellular response to alkyl hydroperoxide // inferred from electronic annotation /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from electronic annotation /// 0090026 // positive regulation of monocyte chemotaxis // inferred from direct as say /// 0090026 // positive regulation of monocyte chemotaxis // inferred from electronic annotation /// 2000110 // negative regulation of macrophage apoptotic process // inferred from electronic annotation /// 2000503 // positive regulation of natural killer cell chemotaxis // inferred from direct assay,0005576 // extracellular region // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation,0004435 // phosphatidylinositol phospholipase C activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from direct assay /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008009 // chemokine activity // inf erred from direct assay /// 0008009 // chemokine activity // non-traceable author statement /// 0008009 // chemokine activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0016004 // phospholipase activator activity // inferred from direct assay /// 0030298 // receptor signaling protein tyrosine kinase activator activity // inferred from direct assay /// 0031726 // CCR1 chemokine receptor binding // inferred from direct assay /// 0031726 // CCR1 chemokine receptor binding // inferred from physical interaction /// 0031726 // CCR1 chemokine receptor binding // traceable author statement /// 0031726 // CCR1 chemokine receptor binding // inferred from electronic annotation /// 0031729 // CCR4 chemokine receptor binding // traceable author statement /// 0031730 // CCR5 chemokine receptor binding // inferred from physical interaction /// 0042056 // chemoattractant activity // inferred from direct assay /// 0042379 // chemokine receptor binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043621 // protein self-association // inferred from direct assay /// 0046817 // chemokine receptor antagonist activity // inferred from direct assay,---,IPR001811 // Chemokine interleukin-8-like domain // 2.2E-26,ENST00000293272(14) ENST00000366113(14) M21121(14) NM_002985(14),ENST00000293272 // cdna:known chromosome:GRCh37:17:34198495:34207499:-1 gene:ENSG00000161570 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 14 // --- /// ENST00000366113 // cdna:putative chromosome:GRCh37:17:34198495:34207797:-1 gene:ENSG00000161570 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 14 // --- /// M21121 // Human T cell-specific protein (RANTES) mRNA complete cds. // gb // 14 // --- /// NM_002985 // Homo sapiens chemokine (C-C motif) ligand 5 (CCL5) mRNA. // refseq // 14 // ---,--- +1431_at,J02843cds, J02843 /FEATURE=cds /DEFINITION=HUMCYPIIE Human cytochrome P450IIE1 (ethanol-inducible) gene complete cds ,J02843,---,Hs.12907,chr10:135340899-135352468 (+) // 99.87 // q26.3,cytochrome P450 family 2 subfamily E polypeptide 1,CYP2E1,chr10q24.3-qter,full length,ENSG00000130649,1571,A8K457 /// F5H694 /// H0Y593 /// H0Y7H4 /// H0YGV5 /// P05181 /// Q16868 /// Q3YA63 /// Q4LBD0 /// Q573G9 /// Q573H0 /// Q59EW1 /// Q6NWT7 /// Q6NWT9,EC:1.14.13.n7,124040,NP_000764,NM_000773,0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0006805 // xenobiotic metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from mutant phenotype /// 0010193 // response to ozone // inferred from electronic annotation /// 0010243 // response to organic nitrogen // inferred from electronic annotation /// 0016098 // monoterpen oid metabolic process // inferred from direct assay /// 0017144 // drug metabolic process // inferred from direct assay /// 0017144 // drug metabolic process // inferred from mutant phenotype /// 0042493 // response to drug // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0046483 // heterocycle metabolic process // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from electronic annotation,0000139 // Golgi membrane // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred f rom electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation,0004497 // monooxygenase activity // inferred from direct assay /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // traceable author statement /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016705 // oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0016709 // oxido reductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen // traceable author statement /// 0016709 // oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen // inferred from electronic annotation /// 0016712 // oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen reduced flavin or flavoprotein as one donor and incorporation of one atom of oxygen // inferred from electronic annotation /// 0019825 // oxygen binding // traceable author statement /// 0019899 // enzyme binding // inferred from physical interaction /// 0020037 // heme binding // inferred from direct assay /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation / // 0070330 // aromatase activity // inferred from electronic annotation,---,IPR001128 // Cytochrome P450 // 2.6E-156 /// IPR001128 // Cytochrome P450 // 4.7E-119 /// IPR001128 // Cytochrome P450 // 4.8E-104,AF182276(16) AK290822(16) BC067433(14) BC067435(16) ENST00000252945(13) ENST00000368520(12) ENST00000418356(12) ENST00000421586(12) ENST00000463117(13) ENST00000541080(10) J02625(16) NM_000773(16),AB209700 // Homo sapiens mRNA for cytochrome P450 family 2 subfamily E polypeptide 1 variant protein. // gb // 15 // --- /// AF182276 // Homo sapiens cytochrome P450-2E1 (CYP2E1) mRNA complete cds. // gb // 16 // --- /// AK290822 // Homo sapiens cDNA FLJ75676 complete cds highly similar to Homo sapiens cytochrome P450 family 2 subfamily E polypeptide 1(CYP2E1) mRNA. // gb // 16 // --- /// BC067433 // Homo sapiens cytochrome P450 family 2 subfamily E polypeptide 1 mRNA (cDNA clone MGC:79260 IMAGE:7002160) complete cds. // gb // 14 // --- /// BC067435 // Homo sapiens cytochrome P450 family 2 subfamily E polypeptide 1 mRNA (cDNA clone MGC:79262 IMAGE:7002164) complete cds. // gb // 16 // --- /// ENST00000252945 // cdna:known chromosome:GRCh37:10:135340867:135352620:1 gene:ENSG00000130649 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 13 // --- /// ENST00000368520 // cdna:known chromosome:GRCh37:10:135345080:135374724:1 gene:ENSG00000130649 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 12 // --- /// ENST00000418356 // cdna:novel chromosome:GRCh37:10:135341001:135352315:1 gene:ENSG00000130649 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 12 // --- /// ENST00000421586 // cdna:novel chromosome:GRCh37:10:135341001:135352315:1 gene:ENSG00000130649 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 12 // --- /// ENST00000463117 // cdna:known chromosome:GRCh37:10:135333910:135352626:1 gene:ENSG00000130649 gene_biotype:protein_c oding transcript_biotype:protein_coding // ensembl // 13 // --- /// ENST00000541080 // cdna:known chromosome:GRCh37:10:135341001:135352315:1 gene:ENSG00000130649 gene_biotype:protein_coding transcript_biotype:nonsense_mediated_decay // ensembl // 10 // --- /// GENSCAN00000032621 // cdna:genscan chromosome:GRCh37:10:135340900:135351494:1 transcript_biotype:protein_coding // ensembl // 12 // --- /// J02625 // Human cytochrome P-450j mRNA complete cds. // gb // 16 // --- /// NM_000773 // Homo sapiens cytochrome P450 family 2 subfamily E polypeptide 1 (CYP2E1) mRNA. // refseq // 16 // ---,S77873 // gb // 1 // Cross Hyb Matching Probes /// ENST00000469258 // ensembl // 5 // Cross Hyb Matching Probes +1438_at,X75208cds,X75208 /FEATURE=cds /DEFINITION=HSPTKR H.sapiens HEK2 mRNA for protein tyrosine kinase receptor,X75208,---,Hs.2913,chr3:184280023-184299410 (+) // 97.2 // q27.1,EPH receptor B3,EPHB3,chr3q21-qter,full length,ENSG00000182580,2049,P54753,EC:2.7.10.1,601839,NP_004434,NM_004443,0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001655 // urogenital system development // inferred from sequence or structural similarity /// 0001655 // urogenital system development // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0 007411 // axon guidance // inferred from sequence or structural similarity /// 0007411 // axon guidance // inferred from electronic annotation /// 0007413 // axonal fasciculation // inferred from sequence or structural similarity /// 0007413 // axonal fasciculation // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016477 // cell migration // inferred from direct assay /// 0016477 // cell migration // inferred from electronic annotation /// 0021952 // central nervous system projection neuron axonogenesis // inferred from electronic annotation /// 0022038 // corpus callosum development // inferred from sequence or structural similarity /// 0022038 // corpus callosum development // inferred from electronic annotation /// 0022407 // regulation of cell-cell adhesion // inferred from direct assay /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0032314 // regulation of Rac GTPase activity // inferred from direct assay /// 0034446 // substrate adhesion-dependent cell spreading // inferred from direct assay /// 0043088 // regulation of Cdc42 GTPase activity // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048013 // ephrin receptor signaling pathway // inferred from direct assay /// 0048013 // ephrin receptor signaling pathway // inferred from electronic annotation /// 0048538 // thymus development // inferred from sequence or structural similarity /// 0048538 // thymus development // inferred from electronic annotation /// 0048546 // digestive tract morphogenesis // inferred from sequence or structural similarity /// 0048546 // digestive tract morphogenesis // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // inferred from sequence or structural similarity /// 0050770 // regulation of axonogenesis // inferred from electronic annotation /// 0051965 // positi ve regulation of synapse assembly // inferred from sequence or structural similarity /// 0051965 // positive regulation of synapse assembly // inferred from electronic annotation /// 0060021 // palate development // inferred from sequence or structural similarity /// 0060021 // palate development // inferred from electronic annotation /// 0060996 // dendritic spine development // inferred from sequence or structural similarity /// 0060996 // dendritic spine development // inferred from electronic annotation /// 0060997 // dendritic spine morphogenesis // inferred from sequence or structural similarity /// 0060997 // dendritic spine morphogenesis // inferred from electronic annotation,0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation,0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005003 // ephrin receptor activity // inferred from direct assay /// 0005003 // ephrin receptor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008046 // axon guidance receptor activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 00 16740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity transferring phosphorus-containing groups // inferred from electronic annotation,---,IPR000719 // Protein kinase catalytic domain // 1.4E-48 /// IPR001090 // Ephrin receptor ligand binding domain // 3.5E-76 /// IPR001245 // Serine-threonine/tyrosine-protein kinase catalytic domain // 5.6E-95 /// IPR003961 // Fibronectin type III // 2.4E-18 /// IPR003961 // Fibronectin type III // 1.7E-17 /// IPR011510 // Sterile alpha motif type 2 // 7.2E-25 /// IPR011641 // Tyrosine-protein kinase ephrin type A/B receptor-like // 4.5E-10 /// IPR021129 // Sterile alpha motif type 1 // 1.0E-26,BC052968(16) ENST00000330394(16) NM_004443(16),BC052968 // Homo sapiens EPH receptor B3 mRNA (cDNA clone MGC:54077 IMAGE:6472607) complete cds. // gb // 16 // --- /// ENST00000330394 // cdna:known chromosome:GRCh37:3:184279572:184300197:1 gene:ENSG00000182580 gene_biotype:protein_coding trans cript_biotype:protein_coding // ensembl // 16 // --- /// GENSCAN00000011588 // cdna:genscan chromosome:GRCh37:3:184280024:184299410:1 transcript_biotype:protein_coding // ensembl // 16 // --- /// NM_004443 // Homo sapiens EPH receptor B3 (EPHB3) mRNA. // refseq // 16 // ---,--- +1487_at,L38487mRNA, L38487 /FEATURE=mRNA /DEFINITION=HUMHERRA1 Human estrogen receptor-related protein (hERRa1) mRNA 3' end partial cds ,L38487,---,Hs.110849,chr11:64073043-64084210 (+) // 97.02 // q13.1,estrogen-related receptor alpha,ESRRA,chr11q13,full length,ENSG00000173153,2101,A8CGI6 /// F5GWT5 /// F5H0E9 /// H0YGT3 /// P11474 /// Q569H8 /// Q6GMQ8 /// Q8N4S8 /// Q96F89 /// Q96I02,---,601998,NP_004442,NM_004451,0006351 // transcription DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription DNA-dependent // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0030278 // regulation of ossification // inferred from electronic annotation /// 0030522 // intracellular receptor mediated signaling pathway // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043401 // steroid hormone mediated signaling pathway // inferred from electronic annotation /// 0045667 // regulation of osteoblast differentiation // inferred from electronic annotation /// 0045670 // regulation of osteoclast differentiation // inferred from electronic annotation /// 0045893 // positive regulation of transcription DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051216 // cartilage development // inferred from electronic annotation,0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement,0003677 // DNA binding // traceable author statement /// 0 003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity // traceable author statement /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation,Nuclear_Receptors // GenMAPP,IPR000536 // Nuclear hormone recep tor ligand-binding core // 1.9E-38 /// IPR000536 // Nuclear hormone receptor ligand-binding core // 1.9E-38 /// IPR001628 // Zinc finger nuclear hormone receptor-type // 1.2E-34,BC011528(16) BC063795(16) BC073956(16) BC092470(16) ENST00000000442(13) ENST00000405666(13) ENST00000406310(13) NM_004451(16) X51416(16),BC011528 // Homo sapiens clone IMAGE:3855067 mRNA partial cds. // gb // 16 // --- /// BC063795 // Homo sapiens estrogen-related receptor alpha mRNA (cDNA clone MGC:70614 IMAGE:6527166) complete cds. // gb // 16 // --- /// BC073956 // Homo sapiens estrogen-related receptor alpha mRNA (cDNA clone IMAGE:6011619) partial cds. // gb // 16 // --- /// BC092470 // Homo sapiens estrogen-related receptor alpha mRNA (cDNA clone MGC:104575 IMAGE:30336569) complete cds. // gb // 16 // --- /// ENST00000000442 // cdna:known chromosome:GRCh37:11:64073050:64084210:1 gene:ENSG00000173153 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 13 // - -- /// ENST00000405666 // cdna:known chromosome:GRCh37:11:64073699:64084215:1 gene:ENSG00000173153 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 13 // --- /// ENST00000406310 // cdna:known chromosome:GRCh37:11:64073044:64084210:1 gene:ENSG00000173153 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 13 // --- /// NM_004451 // Homo sapiens estrogen-related receptor alpha (ESRRA) mRNA. // refseq // 16 // --- /// X51416 // Human mRNA for steroid hormone receptor hERR1. // gb // 16 // ---,--- +1494_f_at,M33318mRNA, M33318 /FEATURE=mRNA /DEFINITION=HUMCPIIA3A Human cytochrome P450IIA3 (CYP2A3) mRNA complete cds ,M33318,---,Hs.250615,chr19:41349446-41356339 (-) // 98.4 // q13.2,cytochrome P450 family 2 subfamily A polypeptide 6,CYP2A6,chr19q13.2,full length,ENSG00000198077 /// ENSG00000255974,1548,F8W816 /// P11509 /// P20853,EC:1.14.14.1,122700 /// 122720 /// 188890 /// 211980,NP_000753,NM_000762,0006805 // xenobiotic metabolic process // traceable author statement /// 0008202 // steroid metabolic process // inferred from mutant phenotype /// 0009804 // coumarin metabolic process // inferred from direct assay /// 0017144 // drug metabolic process // inferred from direct assay /// 0017144 // drug metabolic process // inferred from mutant phenotype /// 0042738 // exogenous drug catabolic process // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0046226 // coumarin catabolic process // inferred from dir ect assay /// 0055114 // oxidation-reduction process // inferred from electronic annotation,0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation,0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008389 // coumarin 7-hydroxylase activity // inferred from direct assay /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016705 // oxidoreductase activity acting on paired donors with incorporation or reduction of mol ecular oxygen // inferred from electronic annotation /// 0016712 // oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen reduced flavin or flavoprotein as one donor and incorporation of one atom of oxygen // inferred from electronic annotation /// 0019825 // oxygen binding // traceable author statement /// 0019899 // enzyme binding // inferred from physical interaction /// 0020037 // heme binding // inferred from direct assay /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation,---,IPR001128 // Cytochrome P450 // 1.3E-155 /// IPR001128 // Cytochrome P450 // 9.6E-152 /// IPR001128 // Cytochrome P450 // 2.8E-125,AF182275(13) BC096253(12) BC096254(13) BC096255(13) BC096256(12) ENST00000301141(14) M33318(16) NM_000762(15) X06401(15),AF182275 // Homo sapiens cytochrome P450 -2A6 (CYP2A6) mRNA complete cds. // gb // 13 // --- /// BC096253 // Homo sapiens cytochrome P450 family 2 subfamily A polypeptide 6 mRNA (cDNA clone MGC:116918 IMAGE:40006061) complete cds. // gb // 12 // --- /// BC096254 // Homo sapiens cytochrome P450 family 2 subfamily A polypeptide 6 mRNA (cDNA clone MGC:116919 IMAGE:40006062) complete cds. // gb // 13 // --- /// BC096255 // Homo sapiens cytochrome P450 family 2 subfamily A polypeptide 6 mRNA (cDNA clone MGC:116920 IMAGE:40006064) complete cds. // gb // 13 // --- /// BC096256 // Homo sapiens cytochrome P450 family 2 subfamily A polypeptide 6 mRNA (cDNA clone MGC:116921 IMAGE:40006068) complete cds. // gb // 12 // --- /// ENST00000291764 // cdna:known chromosome:GRCh37:19:41381344:41388657:-1 gene:ENSG00000198077 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 9 // --- /// ENST00000301141 // cdna:known chromosome:GRCh37:19:41349444:41356352:-1 gene:ENSG00000255974 gene_biot ype:protein_coding transcript_biotype:protein_coding // ensembl // 14 // --- /// ENST00000301146 // cdna:known chromosome:GRCh37:19:41381344:41388657:-1 gene:ENSG00000198077 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 9 // --- /// GENSCAN00000043183 // cdna:genscan chromosome:GRCh37:19:41349701:41356331:-1 transcript_biotype:protein_coding // ensembl // 12 // --- /// M33317 // Human cytochrome P450IIA4 (CYP2A4) mRNA complete cds. // gb // 9 // --- /// M33318 // Human cytochrome P450IIA3 (CYP2A3) mRNA complete cds. // gb // 16 // --- /// NM_000762 // Homo sapiens cytochrome P450 family 2 subfamily A polypeptide 6 (CYP2A6) mRNA. // refseq // 15 // --- /// NM_000764 // Homo sapiens cytochrome P450 family 2 subfamily A polypeptide 7 (CYP2A7) transcript variant 1 mRNA. // refseq // 9 // --- /// NM_030589 // Homo sapiens cytochrome P450 family 2 subfamily A polypeptide 7 (CYP2A7) transcript variant 2 mRNA. // refseq // 9 // --- /// X 06401 // Human cytochrome P450 (IIA subfamily) mRNA fragment. // gb // 15 // --- /// X13930 // Human CYP2A4 mRNA for P-450 IIA4 protein. // gb // 16 // ---,AF209774 // gb // 3 // Cross Hyb Matching Probes /// AY513604 // gb // 3 // Cross Hyb Matching Probes /// AY513605 // gb // 3 // Cross Hyb Matching Probes /// AY513606 // gb // 3 // Cross Hyb Matching Probes /// AY513607 // gb // 3 // Cross Hyb Matching Probes /// AY513608 // gb // 3 // Cross Hyb Matching Probes /// AY513609 // gb // 3 // Cross Hyb Matching Probes /// BC117165 // gb // 7 // Cross Hyb Matching Probes /// BC143325 // gb // 7 // Cross Hyb Matching Probes /// K03192 // gb // 6 // Cross Hyb Matching Probes /// U22029 // gb // 8 // Cross Hyb Matching Probes /// GENSCAN00000025558 // ensembl // 3 // Cross Hyb Matching Probes /// GENSCAN00000043179 // ensembl // 8 // Cross Hyb Matching Probes /// ENST00000330436 // ensembl // 3 // Cross Hyb Matching Probes /// AK309594 // gb_htc // 2 // Cross Hyb Matching Probes /// NM_000766 // refseq // 3 // Cross Hyb Matching Probes +1598_g_at,L13720, L13720 /FEATURE= /DEFINITION=HUMGAS Homo sapiens growth-arrest-specific protein (gas) mRNA complete cds ,L13720,---,Hs.646346,chr13:114523546-114567030 (-) // 96.79 // q34,growth arrest-specific 6,GAS6,chr13q34,full length,ENSG00000183087,2621,B3KRQ7 /// B4DZY7 /// E9PBL7 /// Q14393 /// Q658L2,---,600441,NP_000811 /// NP_001137417 /// NP_001137418,NM_000820 /// NM_001143945 /// NM_001143946,0001764 // neuron migration // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0001934 // positive regulation of protein phosphorylation // inferred from sequence or structural similarity /// 0001961 // positive regulation of cytokine-mediated signaling pathway // inferred from mutant phenotype /// 0002576 // platelet degranulation // traceable author statement /// 0003104 // positive regulation of glomerular filtration // inferred from sequence or structural similarity /// 0006468 // pr otein phosphorylation // inferred from direct assay /// 0006508 // proteolysis // traceable author statement /// 0006909 // phagocytosis // inferred from direct assay /// 0007050 // cell cycle arrest // traceable author statement /// 0007155 // cell adhesion // traceable author statement /// 0007165 // signal transduction // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007167 // enzyme linked receptor protein signaling pathway // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0007596 // blood coagulation // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0009267 // cellular response to starvation // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0010804 // negative regulation of tumor necrosis factor-mediated signaling pathway // inferred from direct assay /// 0010934 // macrophage cytokine production // inferred from electronic annotation /// 0016477 // cell migration // traceable author statement /// 0017187 // peptidyl-glutamic acid carboxylation // traceable author statement /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0019064 // viral envelope fusion with host membrane // inferred from direct assay /// 0019079 // viral genome replication // inferred from direct assay /// 0030168 // platelet activation // traceable author statement /// 0031589 // cell-substrate adhesion // inferred from electronic annotation /// 0032008 // positive regulation of TOR signaling cascade // inferred from sequence or structural similarity /// 0032148 // activation of protein kinase B activity // inferred from sequence or structural similarity /// 0032689 // negative regulation of interferon-gamma production // inferre d from direct assay /// 0032715 // negative regulation of interleukin-6 production // inferred from direct assay /// 0032720 // negative regulation of tumor necrosis factor production // inferred from direct assay /// 0032825 // positive regulation of natural killer cell differentiation // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0033159 // negative regulation of protein import into nucleus translocation // inferred from direct assay /// 0035457 // cellular response to interferon-alpha // inferred from direct assay /// 0035690 // cellular response to drug // inferred from direct assay /// 0035754 // B cell chemotaxis // inferred from direct assay /// 0040008 // regulation of growth // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from electroni c annotation /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043277 // apoptotic cell clearance // inferred from direct assay /// 0043277 // apoptotic cell clearance // inferred from electronic annotation /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0043491 // protein kinase B signaling cascade // inferred from direct assay /// 0043491 // protein kinase B signaling cascade // inferred from electronic annotation /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045860 // positive regulation of protein kinase activity // inferred from direct assay /// 0045892 // negative regulation of transcription DNA-dependent // inferred from direct assay /// 0046718 // viral entry into host cell // inferred from direct assay /// 0046813 // virion attachment binding of host cell surface receptor // inferred from direct assay /// 0046827 // positive regulation of protein export from nucleus // inferred from direct assay /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay /// 0050711 // negative regulation of interleukin-1 secretion // inferred from direct assay /// 0050766 // positive regulation of phagocytosis // inferred from direct assay /// 0050900 // leukocyte migration // traceable author statement /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from direct assay /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from direct assay /// 0061098 // positive regulation of protein tyrosine kinase activity // inferred from direct assay /// 0070168 // negative regulation of biomineral tissue development // inferred from direct assay /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0070527 // platelet aggregation // traceable author statement /// 0071307 // cellular response to vitamin K // inferred from direct assay /// 0071333 // cellular response to glucose stimulus // inferred from sequence or structural similarity /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0072661 // protein targeting to plasma membrane // inferred from direct assay /// 0085029 // extracellular matrix assembly // inferred from sequence or structural similarity /// 0097028 // dendritic cell differentiation // inferred from expression pattern /// 0097241 // hematopoietic stem cell migration to bone marrow // inferred from direct assay /// 1900142 // negative regulation of oligodendrocyte apoptotic process // inferred from direct assay /// 1900165 // negative regulation of interleukin-6 secretion // inferred from direct assay /// 200027 0 // negative regulation of fibroblast apoptotic process // inferred from direct assay /// 2000352 // negative regulation of endothelial cell apoptotic process // inferred from direct assay /// 2000510 // positive regulation of dendritic cell chemotaxis // inferred from direct assay /// 2000533 // negative regulation of renal albumin absorption // inferred from sequence or structural similarity /// 2000669 // negative regulation of dendritic cell apoptotic process // inferred from direct assay,0005576 // extracellular region // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005796 // Golgi lumen // traceable author statement /// 0031093 // platelet alpha granule lumen // traceable author statement,0001786 // phosphatidylserine binding // inferred from direct assay /// 0005102 // receptor binding // inferred from direct assay /// 0005102 // receptor binding // inferred from physical interaction /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030296 // protein tyrosine kinase activator activity // inferred from direct assay /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction /// 0043027 // cysteine-type endopeptidase inhibitor activity involved in apoptotic process // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048018 // receptor agonist activity // inferred from direct assay /// 0048018 // receptor agonist activity // inferred from electronic annotatio n /// 0060090 // binding bridging // inferred from direct assay,---,IPR000294 // Gamma-carboxyglutamic acid-rich (GLA) domain // 5.8E-18 /// IPR000294 // Gamma-carboxyglutamic acid-rich (GLA) domain // 6.3E-18 /// IPR001791 // Laminin G domain // 6.1E-18 /// IPR001791 // Laminin G domain // 3.7E-16 /// IPR001791 // Laminin G domain // 1.1E-22 /// IPR001791 // Laminin G domain // 5.6E-8 /// IPR001791 // Laminin G domain // 6.8E-18 /// IPR001791 // Laminin G domain // 4.1E-16 /// IPR001791 // Laminin G domain // 1.2E-22 /// IPR001791 // Laminin G domain // 6.1E-8 /// IPR001791 // Laminin G domain // 4.3E-18 /// IPR001791 // Laminin G domain // 2.6E-16 /// IPR001791 // Laminin G domain // 7.6E-23 /// IPR001791 // Laminin G domain // 4.0E-8 /// IPR001791 // Laminin G domain // 9.8E-19 /// IPR001791 // Laminin G domain // 6.0E-17 /// IPR001791 // Laminin G domain // 1.7E-23 /// IPR001791 // Laminin G domain // 9.8E-9 /// IPR001791 // Laminin G domain // 8.6E-19 /// IPR001791 // Laminin G domain // 5.3E-17 /// IPR001791 // Laminin G domain // 1.5E-23 /// IPR001791 // Laminin G domain // 8.7E-9 /// IPR001881 // EGF-like calcium-binding // 1.9E-10 /// IPR001881 // EGF-like calcium-binding // 7.0E-11 /// IPR001881 // EGF-like calcium-binding // 4.6E-8 /// IPR001881 // EGF-like calcium-binding // 2.1E-10 /// IPR001881 // EGF-like calcium-binding // 7.6E-11 /// IPR001881 // EGF-like calcium-binding // 4.9E-8 /// IPR001881 // EGF-like calcium-binding // 1.4E-10 /// IPR001881 // EGF-like calcium-binding // 5.1E-11 /// IPR001881 // EGF-like calcium-binding // 3.3E-8,AK126533(16) AK290803(15) AK303145(10) BC038984(16) ENST00000327773(16) ENST00000355761(16) ENST00000357389(16) ENST00000418959(16) ENST00000450766(16) ENST00000480426(16) L13720(16) NM_000820(16) NM_001143945(16) NM_001143946(16),AK126533 // Homo sapiens cDNA FLJ44569 fis clone UTERU3009979 highly similar to Homo sapiens growth arrest-specific 6 (GAS6). // gb // 16 // --- /// AK129751 // Homo sapiens cDNA FLJ26240 fis clone DMC00611. // gb // 16 // --- /// AK290803 // Homo sapiens cDNA FLJ76785 complete cds highly similar to Homo sapiens growth arrest-specific 6 (GAS6) mRNA. // gb // 15 // --- /// AK303145 // Homo sapiens cDNA FLJ57022 complete cds highly similar to Growth-arrest-specific protein 6 precursor. // gb // 10 // --- /// BC038984 // Homo sapiens growth arrest-specific 6 mRNA (cDNA clone MGC:47731 IMAGE:5761791) complete cds. // gb // 16 // --- /// ENST00000327773 // cdna:known chromosome:GRCh37:13:114523531:114567040:-1 gene:ENSG00000183087 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000355761 // cdna:known chromosome:GRCh37:13:114523524:114550056:-1 gene:ENSG00000183087 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000357389 // cdna:known chromosome:GRCh37:13:114523524:114567046:-1 gene:ENSG00000183087 gene_biotype:protein_coding transcript_bio type:protein_coding // ensembl // 16 // --- /// ENST00000418959 // cdna:known chromosome:GRCh37:13:114523524:114536714:-1 gene:ENSG00000183087 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000450766 // cdna:known chromosome:GRCh37:13:114523524:114539017:-1 gene:ENSG00000183087 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000480426 // cdna:known chromosome:GRCh37:13:114523524:114536714:-1 gene:ENSG00000183087 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 16 // --- /// L13720 // Homo sapiens growth-arrest-specific protein (gas) mRNA complete cds. // gb // 16 // --- /// NM_000820 // Homo sapiens growth arrest-specific 6 (GAS6) transcript variant 1 mRNA. // refseq // 16 // --- /// NM_001143945 // Homo sapiens growth arrest-specific 6 (GAS6) transcript variant 2 mRNA. // refseq // 16 // --- /// NM_001143946 // Homo sapiens growth arrest-spe cific 6 (GAS6) transcript variant 3 mRNA. // refseq // 16 // ---,--- +160020_at,4870053,Z48481 /FEATURE=cds /DEFINITION=HSMMPM1 H.sapiens mRNA for membrane-type matrix metalloproteinase 1 /NOTE=replacement of probe set 1301_s_at,Z48481,---,Hs.2399,chr14:23305807-23316802 (+) // 92.69 // q11.2,matrix metallopeptidase 14 (membrane-inserted),MMP14,chr14q11-q12,full length,ENSG00000157227,4323,B2R6P3 /// F8VP90 /// F8W1B7 /// P50281,EC:3.4.24.80,600754,NP_004986,NM_004995,0001503 // ossification // inferred from electronic annotation /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001935 // endothelial cell proliferation // inferred from electronic annotation /// 0006355 // regulation of transcription DNA-dependent // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // traceable author stat ement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from electronic annotation /// 0010952 // positive regulation of peptidase activity // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030324 // lung development // inferred from electronic annotation /// 0031638 // zymogen activation // inferred from electronic annotation /// 0043615 // astrocyte cell migration // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048771 // tissue remodeling // inferred from electronic annotation /// 0051895 // negative regulation of focal adhesion assembly // inferred from electronic annotation,0005737 // cytoplasm // inferred from electronic annotation /// 0005796 // Golgi lumen // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation,0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004222 // metalloendopep tidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // traceable author statement /// 0005178 // integrin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // traceable author statement /// 0016504 // peptidase activator activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation,Matrix_Metalloproteinases // GenMAPP,IPR001818 // Peptidase M10 metallopeptidase // 7.5E-58 /// IPR002477 // Peptidoglycan binding -like // 2.5E-15 /// IPR018487 // Hemopexin/matrixin repeat // 1.5E-17 /// IPR018487 // Hemopexin/matrixin repeat // 2.1E-16 /// IPR018487 // Hemopexin/matrixin repeat // 6.0E-18 /// IPR018487 // Hemopexin/matrixin repeat // 2.2E-15 /// IPR021805 // Peptidase M10A matrix metallopeptidase C-terminal // 1.8E-29,ENST00000311852(16) NM_004995(16),ENST00000311852 // cdna:known chromosome:GRCh37:14:23305766:23316970:1 gene:ENSG00000157227 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// NM_004995 // Homo sapiens matrix metallopeptidase 14 (membrane-inserted) (MMP14) mRNA. // refseq // 16 // ---,--- +1729_at,L41690, L41690 /FEATURE= /DEFINITION=HUMTRADD Homo sapiens TNF receptor-1 associated protein (TRADD) mRNA 3' end of cds ,L41690,---,Hs.460996,chr16:67188103-67193780 (-) // 88.92 // q22.1,TNFRSF1A-associated via death domain,TRADD,chr16q22,full length,ENSG00000102871,8717,B3KQZ9 /// B4DWM0 /// Q15628,---,603500,NP_003780,NM_003789 /// NM_153425,0006915 // apoptotic process // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // traceable author statement /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0008624 // induction of apoptosis by extracellular signals // traceable author statement /// 0008633 // activation of pro-apoptotic gene products // traceable author statement /// 0033209 // tumor necrosis factor-mediated signaling pathway // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from expression pattern /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0051798 // positive regulation of hair follicle development // inferred from electronic annotation /// 0097191 // extrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 0097191 // extrinsic apoptotic signaling pathway // traceable author statement,0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay,0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019900 // kinase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0060090 // binding bridging // inferred from physical interaction /// 0070513 // death domain binding // inferred from physical interaction,Apoptosis // GenMAPP /// Apoptosis_GenMAPP // GenMAPP /// Apoptosis_KEGG // GenMAPP,IPR000488 // Death // 2.6E-11 /// IPR009095 // TRADD N-terminal // 4.3E-53,AK090673(15) BC004491(15) ENST00000345057(15) ENST00000486556(15) NM_003789(15),AK090673 // Homo sapiens cDNA FLJ33354 fis clone BRACE2005124 highly similar to Tumor necrosis factor receptor type1-associated DEATH domain protein. // gb // 15 // --- /// BC004491 // Ho mo sapiens TNFRSF1A-associated via death domain mRNA (cDNA clone MGC:11078 IMAGE:3689007) complete cds. // gb // 15 // --- /// ENST00000345057 // cdna:known chromosome:GRCh37:16:67188083:67194201:-1 gene:ENSG00000102871 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 15 // --- /// ENST00000486556 // cdna:known chromosome:GRCh37:16:67188102:67190152:-1 gene:ENSG00000102871 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 15 // --- /// NM_003789 // Homo sapiens TNFRSF1A-associated via death domain (TRADD) mRNA. // refseq // 15 // ---,AB209438 // gb // 1 // Cross Hyb Matching Probes /// BT006934 // gb // 2 // Cross Hyb Matching Probes /// GENSCAN00000036262 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000471490 // ensembl // 1 // Cross Hyb Matching Probes /// AK315654 // gb_htc // 2 // Cross Hyb Matching Probes +1773_at,L00635, L00635 /FEATURE= /DEFINITION=HUMFPTB Human farnesyl-protein transferase beta-subunit mRNA complete cds ,L00635,---,Hs.325531,chr14:65453653-65528278 (+) // 99.81 // q23.3,CHURC1-FNTB readthrough /// farnesyltransferase CAAX box beta,CHURC1-FNTB /// FNTB,chr14q23 /// chr14q23.3,full length,ENSG00000125954 /// ENSG00000257365,100529261 /// 2342,B3KSC2 /// B4DJ86 /// B4DL54 /// B4E1A0 /// H0YHI0 /// H0YIM3 /// P49356 /// Q86TX8,EC:2.5.1.58,134636,NP_001189487 /// NP_001189488 /// NP_002019,NM_001202558 /// NM_001202559 /// NM_002028,0007275 // multicellular organismal development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010035 // response to inorganic substance // inferred from electronic annotati on /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0018343 // protein farnesylation // inferred from direct assay /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0042060 // wound healing // inferred from electronic annotation /// 0045787 // positive regulation of cell cycle // inferred from electronic annotation /// 0045893 // positive regulation of transcription DNA-dependent // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation,0005875 // microtubule associated complex // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation,0003824 // catalytic activity // inferred from electronic annotation /// 0004311 // farnesyltranstransferase activity // inferred from electronic annotation /// 0004659 // prenyltransferase activity // inferred from electronic annotation / // 0004660 // protein farnesyltransferase activity // inferred from direct assay /// 0004660 // protein farnesyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008144 // drug binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019840 // isoprenoid binding // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation,---,IPR001330 // Prenyltransferase/squalene oxidase // 1.9E-16 /// IPR001330 // Prenyltransferase/squalene oxidase // 5.5E-14 /// IPR001330 // Prenyltransferase/squalene oxidase // 8.6E-16 /// IPR001330 // Prenyltransferase/squalene oxidase // 7.1E-14 /// IPR001330 // Prenyltransferase/squalene oxidase // 5.5E-13 /// I PR001330 // Prenyltransferase/squalene oxidase // 1.9E-16 /// IPR001330 // Prenyltransferase/squalene oxidase // 5.5E-14 /// IPR001330 // Prenyltransferase/squalene oxidase // 8.6E-16 /// IPR001330 // Prenyltransferase/squalene oxidase // 7.0E-14 /// IPR001330 // Prenyltransferase/squalene oxidase // 5.5E-13 /// IPR001330 // Prenyltransferase/squalene oxidase // 7.4E-17 /// IPR001330 // Prenyltransferase/squalene oxidase // 2.1E-14 /// IPR001330 // Prenyltransferase/squalene oxidase // 3.4E-16 /// IPR001330 // Prenyltransferase/squalene oxidase // 2.7E-14 /// IPR001330 // Prenyltransferase/squalene oxidase // 2.1E-13 /// IPR001330 // Prenyltransferase/squalene oxidase // 9.4E-15 /// IPR001330 // Prenyltransferase/squalene oxidase // 7.2E-14 /// IPR001330 // Prenyltransferase/squalene oxidase // 8.6E-17 /// IPR001330 // Prenyltransferase/squalene oxidase // 2.5E-14 /// IPR001330 // Prenyltransferase/squalene oxidase // 3.9E-16 /// IPR001330 // Prenyltransferase/squalene oxida se // 3.2E-14 /// IPR001330 // Prenyltransferase/squalene oxidase // 2.5E-13 /// IPR009508 // Transcription activator Churchill // 1.6E-31 /// IPR009508 // Transcription activator Churchill // 2.9E-46 /// IPR009508 // Transcription activator Churchill // 2.9E-46,AK093298(16) AK295972(16) AK296850(11) AK303739(16) BC020232(16) L00635(16) L10414(12) GENSCAN00000020155(10) ENST00000552941(16) ENST00000549987(11) ENST00000447296(11) ENST00000542227(16) ENST00000448390(16) ENST00000246166(16) ENST00000554334(16) ENST00000557300(13) AK315714(10) NM_002028(16) NM_001202558(16) NM_001202559(16),AK093298 // Homo sapiens cDNA FLJ35979 fis clone TESTI2013545 highly similar to Protein farnesyltransferase subunit beta (EC 2.5.1.58). // gb // 16 // --- /// AK295972 // Homo sapiens cDNA FLJ55216 complete cds highly similar to Protein farnesyltransferase subunit beta (EC 2.5.1.58). // gb // 16 // --- /// AK296850 // Homo sapiens cDNA FLJ59570 complete cds highly similar to Protein fa rnesyltransferase subunit beta (EC 2.5.1.58). // gb // 11 // --- /// AK303739 // Homo sapiens cDNA FLJ58825 complete cds highly similar to Protein farnesyltransferase subunit beta (EC 2.5.1.58). // gb // 16 // --- /// AK315714 // Homo sapiens cDNA FLJ96813 Homo sapiens farnesyltransferase CAAX box beta (FNTB) mRNA. // gb_htc // 10 // --- /// BC020232 // Homo sapiens farnesyltransferase CAAX box beta mRNA (cDNA clone MGC:31935 IMAGE:4652202) complete cds. // gb // 16 // --- /// ENST00000246166 // cdna:known chromosome:GRCh37:14:65453438:65529316:1 gene:ENSG00000257365 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000447296 // cdna:known chromosome:GRCh37:14:65381211:65528079:1 gene:ENSG00000125954 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000448390 // cdna:known chromosome:GRCh37:14:65482301:65529368:1 gene:ENSG00000125954 gene_biotype:protein_coding transcript_bi otype:protein_coding // ensembl // 16 // --- /// ENST00000542227 // cdna:known chromosome:GRCh37:14:65381203:65528521:1 gene:ENSG00000125954 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000549987 // cdna:novel chromosome:GRCh37:14:65381211:65528079:1 gene:ENSG00000125954 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000552941 // cdna:known chromosome:GRCh37:14:65381203:65528521:1 gene:ENSG00000125954 gene_biotype:protein_coding transcript_biotype:nonsense_mediated_decay // ensembl // 16 // --- /// ENST00000554334 // cdna:known chromosome:GRCh37:14:65482256:65529368:1 gene:ENSG00000257365 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 16 // --- /// ENST00000557300 // cdna:known chromosome:GRCh37:14:65519878:65528123:1 gene:ENSG00000257365 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 13 // --- /// GENSCAN00000020155 // cdna:genscan chromosome:GRCh37:14:65450485:65528030:1 transcript_biotype:protein_coding // ensembl // 10 // --- /// L00635 // Human farnesyl-protein transferase beta-subunit mRNA complete cds. // gb // 16 // --- /// L10414 // Human farnesyltransferase beta-subunit mRNA complete cds. // gb // 12 // --- /// NM_001202558 // Homo sapiens CHURC1-FNTB readthrough (CHURC1-FNTB) transcript variant 2 mRNA. // refseq // 16 // --- /// NM_001202559 // Homo sapiens CHURC1-FNTB readthrough (CHURC1-FNTB) transcript variant 1 mRNA. // refseq // 16 // --- /// NM_002028 // Homo sapiens farnesyltransferase CAAX box beta (FNTB) mRNA. // refseq // 16 // ---,AK024087 // gb // 5 // Cross Hyb Matching Probes +177_at,U38545, U38545 /FEATURE= /DEFINITION=HSU38545 Human ARF-activated phosphatidylcholine-specific phospholipase D1a (hPLD1) mRNA complete cds ,U38545,---,Hs.382865,chr3:171320592-171528244 (-) // 99.39 // q26.31,phospholipase D1 phosphatidylcholine-specific,PLD1,chr3q26,full length,ENSG00000075651,5337,C9IY79 /// F8WBV7 /// H7C0L3 /// Q13393 /// Q59EA4,EC:3.1.4.4,602382,NP_001123553 /// NP_002653,NM_001130081 /// NM_002662,0006654 // phosphatidic acid biosynthetic process // inferred from electronic annotation /// 0006935 // chemotaxis // traceable author statement /// 0007154 // cell communication // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0009395 // phospholipid catabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation,0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi appara tus // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from electronic annotation /// 0031985 // Golgi cisterna // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation,0003824 // catalytic activity // inferred from electronic annotation /// 0004630 // phospholipase D activity // inferred from electronic annotation /// 0004630 // phospholipase D activity // traceable author statement /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation /// 0070290 // NAP E-specific phospholipase D activity // inferred from electronic annotation,---,IPR001683 // Phox homologous domain // 5.0E-26 /// IPR001683 // Phox homologous domain // 5.3E-26 /// IPR001683 // Phox homologous domain // 2.2E-26 /// IPR001736 // Phospholipase D/Transphosphatidylase // 4.0E-12 /// IPR001736 // Phospholipase D/Transphosphatidylase // 4.2E-12 /// IPR001736 // Phospholipase D/Transphosphatidylase // 2.1E-12 /// IPR001849 // Pleckstrin homology domain // 7.5E-10 /// IPR001849 // Pleckstrin homology domain // 7.8E-10 /// IPR001849 // Pleckstrin homology domain // 3.4E-10,BC068976(16) ENST00000342215(16) ENST00000351298(16) ENST00000356327(16) NM_001130081(16) NM_002662(16) U38545(16),BC068976 // Homo sapiens phospholipase D1 phosphatidylcholine-specific mRNA (cDNA clone MGC:70810 IMAGE:6068382) complete cds. // gb // 16 // --- /// BX648432 // Homo sapiens mRNA; cDNA DKFZp686F18253 (from clone DKFZp686F18253). // gb_htc // 16 // --- /// ENST00000342215 // cdna:kn own chromosome:GRCh37:3:171318620:171528273:-1 gene:ENSG00000075651 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000351298 // cdna:known chromosome:GRCh37:3:171318616:171528284:-1 gene:ENSG00000075651 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000356327 // cdna:known chromosome:GRCh37:3:171318195:171528228:-1 gene:ENSG00000075651 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// NM_001130081 // Homo sapiens phospholipase D1 phosphatidylcholine-specific (PLD1) transcript variant 2 mRNA. // refseq // 16 // --- /// NM_002662 // Homo sapiens phospholipase D1 phosphatidylcholine-specific (PLD1) transcript variant 1 mRNA. // refseq // 16 // --- /// U38545 // Human ARF-activated phosphatidylcholine-specific phospholipase D1a (hPLD1) mRNA complete cds. // gb // 16 // ---,GENSCAN00000028082 // ensembl // 8 // Cross Hyb Matching Probes +179_at,U38980, U38980 /FEATURE= /DEFINITION=U38980 Human PMS2 related (hPMSR6) mRNA complete cds ,U38980,---,Hs.675888,chr7:76610265-76645172 (+) // 94.12 // q11.23,DTX2P1-UPK3BP1-PMS2P11 readthrough (non-protein coding),DTX2P1-UPK3BP1-PMS2P11,chr7q11.23,full length,ENSG00000186704 /// ENSG00000242435,441263,B4DML2 /// Q13670,---,---,---,NR_023383,0006298 // mismatch repair // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation,---,0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030983 // mismatched DNA binding // inferred from electronic annotation,---,---,NR_023383(15) U38980(16),AK297517 // Homo sapiens cDNA FLJ59034 complete cds moderately similar to Protein deltex-2. // gb // 15 // - -- /// ENST00000162863 // cdna:pseudogene chromosome:GRCh37:7:76610419:76673092:1 gene:ENSG00000186704 gene_biotype:pseudogene transcript_biotype:unprocessed_pseudogene // ensembl // 15 // --- /// ENST00000428678 // cdna:pseudogene chromosome:GRCh37:7:76633979:76635091:1 gene:ENSG00000242435 gene_biotype:pseudogene transcript_biotype:unprocessed_pseudogene // ensembl // 12 // --- /// ENST00000440837 // cdna:pseudogene chromosome:GRCh37:7:76624771:76653074:1 gene:ENSG00000186704 gene_biotype:pseudogene transcript_biotype:unprocessed_pseudogene // ensembl // 15 // --- /// GENSCAN00000011901 // cdna:genscan chromosome:GRCh37:7:76600605:76647649:1 transcript_biotype:protein_coding // ensembl // 13 // --- /// NR_023383 // Homo sapiens DTX2P1-UPK3BP1-PMS2P11 readthrough (non-protein coding) (DTX2P1-UPK3BP1-PMS2P11) non-coding RNA. // refseq // 15 // --- /// TCONS_l2_00026034-XLOC_l2_013485 // linc-CCDC146-1 chr7:+:76589130-76643571 // broad-tucp // 12 // --- /// TCONS_l2_00026039 -XLOC_l2_013485 // linc-CCDC146-1 chr7:+:76597088-76636346 // broad-tucp // 12 // --- /// TCONS_l2_00026044-XLOC_l2_013485 // linc-CCDC146-1 chr7:+:76624844-76641322 // broad-tucp // 15 // --- /// TCONS_l2_00026045-XLOC_l2_013485 // linc-CCDC146-1 chr7:+:76624861-76641320 // broad-tucp // 12 // --- /// TCONS_l2_00026047-XLOC_l2_013485 // linc-CCDC146-1 chr7:+:76629591-76671381 // broad-tucp // 15 // --- /// TCONS_l2_00026049-XLOC_l2_013485 // linc-CCDC146-1 chr7:+:76634109-76641650 // broad-tucp // 15 // --- /// TCONS_l2_00026050-XLOC_l2_013485 // linc-CCDC146-1 chr7:+:76634717-76641293 // broad-tucp // 15 // --- /// TCONS_l2_00027144-XLOC_l2_013485 // linc-CCDC146-1 chr7:+:76610138-76653074 // broad-tucp // 15 // --- /// TCONS_l2_00027145-XLOC_l2_013485 // linc-CCDC146-1 chr7:+:76610138-76673095 // broad-tucp // 15 // --- /// U38980 // Human PMS2 related (hPMSR6) mRNA complete cds. // gb // 16 // ---,AK290096 // gb // 4 // Cross Hyb Matching Probes /// AY233462 // gb // 4 // Cross Hyb Matching Probes /// BC004304 // gb // 4 // Cross Hyb Matching Probes /// GENSCAN00000022147 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000434948 // ensembl // 7 // Cross Hyb Matching Probes /// ENST00000334348 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000257632 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000394849 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000490360 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000469114 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000419923 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000448265 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000443097 // ensembl // 4 // Cross Hyb Matching Probes /// NM_030570 // refseq // 4 // Cross Hyb Matching Probes /// NM_182684 // refseq // 4 // Cross Hyb Matching Probes +1861_at,U66879, U66879 /FEATURE= /DEFINITION=HSU66879 Human Bcl-2 binding component 6 (bbc6) mRNA complete cds ,U66879,---,Hs.370254,chr11:64037301-64051883 (-) // 97.38 // q13.1,BCL2-associated agonist of cell death,BAD,chr11q13.1,full length,ENSG00000002330,572,A8MXU7 /// B4DZQ9 /// F5GY71 /// F5H1R6 /// F5H3B1 /// Q6FH21 /// Q92934,---,603167,NP_004313 /// NP_116784,NM_004322 /// NM_032989,0006007 // glucose catabolic process // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred fr om sequence or structural similarity /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0008624 // induction of apoptosis by extracellular signals // traceable author statement /// 0008624 // induction of apoptosis by extracellular signals // inferred from electronic annotation /// 0008629 // induction of apoptosis by intracellular signals // inferred from mutant phenotype /// 0008629 // induction of apoptosis by intracellular signals // traceable author statement /// 0008633 // activation of pro-apoptotic gene products // inferred from mutant phenotype /// 0008633 // activation of pro-apoptotic gene products // traceable autho r statement /// 0010918 // positive regulation of mitochondrial membrane potential // inferred from sequence or structural similarity /// 0010918 // positive regulation of mitochondrial membrane potential // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0032024 // positive regulation of insulin secretion // inferred from sequence or structural similarity /// 0032024 // positive regulation of insulin secretion // inferred from electronic annotation /// 0033133 // positive regulation of glucokinase activity // inferred from sequence or structural similarity /// 0033133 // positive regulation of glucokinase activity // inferred from electronic annotation /// 0035774 // positive regulation of insulin secretion involved in cellular response to glucose stimulus // inferred from electronic annotation /// 0042593 // glucose homeostasis // inferred from sequence or structural similarity /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043281 // regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0044342 // type B pancreatic cell proliferation // inferred from sequence or structural similarity /// 0044342 // type B pancreatic cell proliferation // inferred from electronic annotation /// 0045579 // positive regulation of B cell differentiation // inferred from electronic annotation /// 0045 582 // positive regulation of T cell differentiation // inferred from electronic annotation /// 0046031 // ADP metabolic process // inferred from sequence or structural similarity /// 0046031 // ADP metabolic process // inferred from electronic annotation /// 0046034 // ATP metabolic process // inferred from sequence or structural similarity /// 0046034 // ATP metabolic process // inferred from electronic annotation /// 0046902 // regulation of mitochondrial membrane permeability // inferred from mutant phenotype /// 0046931 // pore complex assembly // inferred from direct assay /// 0048011 // nerve growth factor receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0050679 // positive regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0060154 // cellular process regulating host cell cycle in response to virus // inferred from electronic annotation /// 0 071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0071316 // cellular response to nicotine // inferred from direct assay /// 0071396 // cellular response to lipid // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from expression pattern /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from mutant phenotype /// 0097191 // extrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 2000078 // positive regulation of type B pancreatic cell development // inferred from sequence or structural similarity /// 2000078 // positive regulation of type B pancreatic cell development // inferred from electronic annotation,0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membran e // inferred from direct assay /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation,0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from mutant phenotype /// 0008289 // lipid binding // inferred from direct assay /// 0008656 // cysteine-type endopeptidase activator activity involved in apoptotic process // inferred from direct assay /// 0008656 // cysteine-type endopeptidase activator activity involved in apoptotic process // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation,Apoptosis // GenMAPP /// Apoptosis_KEGG // GenMAPP,IPR018868 // Pro-apoptotic Bcl-2 protein BAD // 4.2E-97 /// IPR018868 // Pro-apoptotic Bcl-2 protein BAD // 3.0E-28 /// IPR018868 // Pro-apoptotic Bcl-2 protein BAD // 5.4E-43 /// IPR018868 // Pro-apoptotic Bcl-2 protein BAD // 1.2E-33 /// IPR018868 // Pro-apoptotic Bcl-2 protein BAD // 4.8E-83,AB451254(16) AF031523(16) AK291863(16) AK303051(16) BC001901(16) BC095431(16) BT006678(16) CR541935(16) CR541959(16) ENST00000309032(16) ENST00000394531(16) ENST00000394532(16) ENST00000492141(16) ENST00000493798(16) ENST00000540152(16) NM_004322(16) NM_032989(16) U66879(16),AB451254 // Homo sapiens BAD mRNA for BCL2-antagonist of cell death protein complete cds clone: FLJ08066AAAN. // gb // 16 // --- /// AF031523 // Homo sapiens bcl-xL/bcl-2 associated death promoter (BAD) mRNA complete cds. // gb // 1 6 // --- /// AK291863 // Homo sapiens cDNA FLJ75743 complete cds highly similar to Homo sapiens BCL2-antagonist of cell death (BAD) transcript variant 1 mRNA. // gb // 16 // --- /// AK303051 // Homo sapiens cDNA FLJ61193 complete cds highly similar to Bcl2 antagonist of cell death. // gb // 16 // --- /// BC001901 // Homo sapiens BCL2-associated agonist of cell death mRNA (cDNA clone MGC:2100 IMAGE:3537914) complete cds. // gb // 16 // --- /// BC095431 // Homo sapiens BCL2-associated agonist of cell death mRNA (cDNA clone MGC:111080 IMAGE:30377088) complete cds. // gb // 16 // --- /// BT006678 // Homo sapiens BCL2-antagonist of cell death mRNA complete cds. // gb // 16 // --- /// CR541935 // Homo sapiens full open reading frame cDNA clone RZPDo834A0634D for gene BAD BCL2-antagonist of cell death; complete cds incl. stopcodon. // gb // 16 // --- /// CR541959 // Homo sapiens full open reading frame cDNA clone RZPDo834G0534D for gene BAD BCL2-antagonist of cell death ; complete cds without stopcodon. // gb // 16 // --- /// ENST00000309032 // cdna:known chromosome:GRCh37:11:64037306:64052141:-1 gene:ENSG00000002330 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000394531 // cdna:putative chromosome:GRCh37:11:64037728:64052125:-1 gene:ENSG00000002330 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000394532 // cdna:known chromosome:GRCh37:11:64037302:64052111:-1 gene:ENSG00000002330 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000492141 // cdna:putative chromosome:GRCh37:11:64037780:64040328:-1 gene:ENSG00000002330 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST00000493798 // cdna:putative chromosome:GRCh37:11:64037741:64039340:-1 gene:ENSG00000002330 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// ENST000 00540152 // cdna:known chromosome:GRCh37:11:64037305:64052175:-1 gene:ENSG00000002330 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 16 // --- /// GENSCAN00000009323 // cdna:genscan chromosome:GRCh37:11:64037523:64052713:-1 transcript_biotype:protein_coding // ensembl // 13 // --- /// NM_004322 // Homo sapiens BCL2-associated agonist of cell death (BAD) transcript variant 1 mRNA. // refseq // 16 // --- /// NM_032989 // Homo sapiens BCL2-associated agonist of cell death (BAD) transcript variant 2 mRNA. // refseq // 16 // --- /// U66879 // Human Bcl-2 binding component 6 (bbc6) mRNA complete cds. // gb // 16 // ---,AK023420 // gb // 13 // Negative Strand Matching Probes +200000_s_at,g5453983,gb:NM_006445.1 /DEF=Homo sapiens U5 snRNP-specific protein (220 kD) ortholog of S. cerevisiae Prp8p (PRP8) mRNA. /FEA=mRNA /GEN=PRP8 /PROD=U5 snRNP-specific protein (220 kD) ortholog ofS. cerevisiae Prp8p /DB_XREF=gi:5453983 /UG=Hs.181368 U5 snRNP-specific protein (220 kD) ortholog of S. cerevisiae Prp8p /FL=gb:AB007510.1 gb:AF092565.1 gb:NM_006445.1,NM_006445,Hs.181368,Hs.181368,chr17:1553923-1588100 (-) // 99.2 // p13.3,PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae),PRPF8,chr17p13.3,full length,ENSG00000174231,10594,B4DK16 /// F5H2I4 /// I3L0J9 /// I3L1T8 /// I3L3Z8 /// Q53GM6 /// Q6JH02 /// Q6JH03 /// Q6P2Q9,---,600059 /// 607300,NP_006436,NM_006445,0000375 // RNA splicing via transesterification reactions // traceable author statement /// 0000398 // nuclear mRNA splicing via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing via spliceosome // traceable author statement /// 0000398 // nuclear mRNA splicing via spliceosome // inferred from electronic annotation /// 0006397 // mRNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement,0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005682 // U5 snRNP // traceable author statement /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay,0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction,---,IPR000555 // JAB1/M ov34/MPN/PAD-1 // 2.9E-16 /// IPR012591 // Pre-mRNA-processing-splicing factor 8 // 2.6E-84 /// IPR012592 // PROCN // 5.7E-226 /// IPR012984 // PRO C-terminal // 1.9E-24 /// IPR012984 // PRO C-terminal // 1.4E-54 /// IPR019580 // Pre-mRNA-processing-splicing factor 8 U6-snRNA-binding // 5.9E-97 /// IPR019580 // Pre-mRNA-processing-splicing factor 8 U6-snRNA-binding // 4.6E-81 /// IPR019581 // Pre-mRNA-processing-splicing factor 8 U5-snRNA-binding // 3.1E-73 /// IPR019582 // RNA recognition motif spliceosomal PrP8 // 9.0E-49 /// IPR021983 // PRP8 domain IV core // 2.4E-132 /// IPR021983 // PRP8 domain IV core // 2.4E-107,AB007510(11) AF092565(11) AK296344(11) BC034545(11) BC064370(11) BX649099(11) ENST00000304992(11) ENST00000540177(11) ENST00000571958(10) ENST00000572621(11) ENST00000572723(11) NM_006445(11),AB007510 // Homo sapiens mRNA for PRP8 protein complete cds. // gb // 11 // --- /// AF092565 // Homo sapiens splicing factor Prp8 mRNA complete cds. // gb // 11 // --- /// AK296344 // Homo sapiens cDNA FLJ57882 complete cds highly similar to Pre-mRNA-processing-splicing factor 8. // gb // 11 // --- /// BC034545 // Homo sapiens PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) mRNA (cDNA clone IMAGE:4473590) with apparent retained intron. // gb_htc // 11 // --- /// BC064370 // Homo sapiens PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) mRNA (cDNA clone MGC:74762 IMAGE:5587081) complete cds. // gb // 11 // --- /// BX649099 // Homo sapiens mRNA; cDNA DKFZp686L08123 (from clone DKFZp686L08123). // gb // 11 // --- /// ENST00000304992 // cdna:known chromosome:GRCh37:17:1553923:1588176:-1 gene:ENSG00000174231 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000540177 // cdna:known chromosome:GRCh37:17:1553924:1588141:-1 gene:ENSG00000174231 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000571958 // cdna:putative chromoso me:GRCh37:17:1553923:1554563:-1 gene:ENSG00000174231 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// ENST00000572621 // cdna:novel chromosome:GRCh37:17:1553925:1588131:-1 gene:ENSG00000174231 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000572723 // cdna:known chromosome:GRCh37:17:1554134:1555440:-1 gene:ENSG00000174231 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 11 // --- /// GENSCAN00000022640 // cdna:genscan chromosome:GRCh37:17:1554096:1587865:-1 transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_006445 // Homo sapiens PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) (PRPF8) mRNA. // refseq // 11 // ---,--- +200001_at,g4502564,gb:NM_001749.1 /DEF=Homo sapiens calpain 4 small subunit (30K) (CAPN4) mRNA. /FEA=mRNA /GEN=CAPN4 /PROD=calpain 4 small subunit /DB_XREF=gi:4502564 /UG=Hs.74451 calpain 4 small subunit (30K) /FL=gb:BC000592.1 gb:NM_001749.1,NM_001749,Hs.74451,Hs.515371,chr19:36630916-36641255 (+) // 93.37 // q13.12,calpain small subunit 1,CAPNS1,chr19q13.12,full length,ENSG00000126247,826,P04632,EC:3.4.22.17,114170,NP_001003962 /// NP_001740,NM_001003962 /// NM_001749,0006508 // proteolysis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement,0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation,0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004198 // calcium-dependent cysteine-type endopeptidase ac tivity // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from electronic annotation,Integrin-mediated_cell_adhesion_KEGG // GenMAPP,---,AK289606(11) BC000592(11) BC007779(11) BC011903(10) BC017308(11) BC018931(11) BC021933(11) BC023643(11) BC064998(11) ENST00000246533(11) NM_001003962(11) NM_001749(11),AK289606 // Homo sapiens cDNA FLJ75451 complete cds highly similar to Homo sapiens calpain small subunit 1 (CAPNS1) mRNA. // gb // 11 // --- /// BC000592 // Homo sapiens calpain small subunit 1 mRNA (cDNA clone MGC:1790 IMAGE:3347146) complete cds. // gb // 11 // --- /// BC007779 // Homo sapiens calpain small subunit 1 mRNA (cDNA clone MGC:12745 IMAGE:4301394) complete cds. // gb // 11 // --- /// BC011903 // Homo sapiens calpain small subunit 1 mRNA (cDNA clone MGC:20290 IMAGE:412057 9) complete cds. // gb // 10 // --- /// BC017308 // Homo sapiens calpain small subunit 1 mRNA (cDNA clone MGC:29672 IMAGE:5089022) complete cds. // gb // 11 // --- /// BC018931 // Homo sapiens calpain small subunit 1 mRNA (cDNA clone MGC:14442 IMAGE:4303926) complete cds. // gb // 11 // --- /// BC021933 // Homo sapiens calpain small subunit 1 mRNA (cDNA clone MGC:32094 IMAGE:4872635) complete cds. // gb // 11 // --- /// BC023643 // Homo sapiens calpain small subunit 1 mRNA (cDNA clone MGC:29704 IMAGE:5017512) complete cds. // gb // 11 // --- /// BC064998 // Homo sapiens calpain small subunit 1 mRNA (cDNA clone MGC:75186 IMAGE:5785274) complete cds. // gb // 11 // --- /// ENST00000246533 // cdna:known chromosome:GRCh37:19:36630918:36641254:1 gene:ENSG00000126247 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_001003962 // Homo sapiens calpain small subunit 1 (CAPNS1) transcript variant 2 mRNA. // refseq // 11 // --- /// NM_001749 // Homo sapiens calpain small subunit 1 (CAPNS1) transcript variant 1 mRNA. // refseq // 11 // ---,BT009775 // gb // 5 // Cross Hyb Matching Probes /// GENSCAN00000004679 // ensembl // 5 // Cross Hyb Matching Probes +200002_at,g6005859,gb:NM_007209.1 /DEF=Homo sapiens ribosomal protein L35 (RPL35) mRNA. /FEA=mRNA /GEN=RPL35 /PROD=ribosomal protein L35 /DB_XREF=gi:6005859 /UG=Hs.182825 ribosomal protein L35 /FL=gb:BC000348.1 gb:U12465.1 gb:NM_007209.1,NM_007209,Hs.182825,Hs.182825,chr9:127620162-127624207 (-) // 97.46 // q33.3,ribosomal protein L35,RPL35,chr9q34.1,full length,ENSG00000136942,11224,F2Z388 /// H0Y3A0 /// P42766,---,---,NP_009140,NM_007209,0000184 // nuclear-transcribed mRNA catabolic process nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslati onal protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral reproduction // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral infectious cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement,0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation,0003729 // mRNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // traceable author statement,Ribosomal_Proteins // GenMAPP,IPR001854 // Ribosomal protein L29 // 2.3E-25 /// IPR001854 // Ribosomal protein L29 // 4.5E-25,AK291072(11) BC000348(11) BC010919(11) BC071915(11) BC094828(11) CR456877(11) ENST00000348462(11) ENST00000373570(11) ENST00000487431(11) ENST00000493018(11) ENST00000495728(9) NM_007209(11) U12465(11),AK291072 // Homo sapiens cDNA FLJ76395 complete cds highly similar to Homo sapiens ribosomal protein L35 (RPL35) mRNA. // gb // 11 // --- /// BC000348 // Homo sapiens ribosomal protein L35 mRNA (cDNA clone MGC:8582 IMAGE:2960987) complete cds. // gb // 11 // --- /// BC0109 19 // Homo sapiens ribosomal protein L35 mRNA (cDNA clone MGC:13488 IMAGE:4251487) complete cds. // gb // 11 // --- /// BC071915 // Homo sapiens ribosomal protein L35 mRNA (cDNA clone MGC:88597 IMAGE:4896387) complete cds. // gb // 11 // --- /// BC094828 // Homo sapiens ribosomal protein L35 mRNA (cDNA clone MGC:104823 IMAGE:4548321) complete cds. // gb // 11 // --- /// CR456877 // Homo sapiens full open reading frame cDNA clone RZPDo834G126D for gene RPL35 ribosomal protein L35; complete cds incl. stopcodon. // gb // 11 // --- /// ENST00000348462 // cdna:known chromosome:GRCh37:9:127620163:127624240:-1 gene:ENSG00000136942 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000373570 // cdna:known chromosome:GRCh37:9:127620159:127623835:-1 gene:ENSG00000136942 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000487431 // cdna:known chromosome:GRCh37:9:127620162:127624215:-1 ge ne:ENSG00000136942 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 11 // --- /// ENST00000493018 // cdna:known chromosome:GRCh37:9:127620162:127624214:-1 gene:ENSG00000136942 gene_biotype:protein_coding transcript_biotype:nonsense_mediated_decay // ensembl // 11 // --- /// ENST00000495728 // cdna:known chromosome:GRCh37:9:127623258:127624260:-1 gene:ENSG00000136942 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 9 // --- /// GENSCAN00000034230 // cdna:genscan chromosome:GRCh37:9:127620197:127624069:-1 transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_007209 // Homo sapiens ribosomal protein L35 (RPL35) mRNA. // refseq // 11 // --- /// U12465 // Human ribosomal protein L35 mRNA complete cds. // gb // 11 // ---,GENSCAN00000001432 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000002456 // ensembl // 3 // Cross Hyb Matching Probes /// GENSCAN00000031040 // ensembl // 4 // Cross Hyb M atching Probes /// GENSCAN00000045943 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000450819 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000402419 // ensembl // 7 // Cross Hyb Matching Probes /// ENST00000433398 // ensembl // 3 // Cross Hyb Matching Probes /// ENST00000446059 // ensembl // 2 // Cross Hyb Matching Probes +200003_s_at,g4506626,gb:NM_000991.1 /DEF=Homo sapiens ribosomal protein L28 (RPL28) mRNA. /FEA=mRNA /GEN=RPL28 /PROD=ribosomal protein L28 /DB_XREF=gi:4506626 /UG=Hs.4437 ribosomal protein L28 /FL=gb:BC000072.1 gb:NM_000991.1 gb:U14969.1,NM_000991,Hs.4437,Hs.652114,chr19:55897314-55899740 (+) // 98.56 // q13.42,ribosomal protein L28,RPL28,chr19q13.4,full length,ENSG00000108107,6158,C9JB50 /// E9PB24 /// G5E9L2 /// H0YKD8 /// H0YLP6 /// H0YMF4 /// P46779 /// Q59F34,EC:3.6.5.3,603638,NP_000982 /// NP_001129606 /// NP_001129607 /// NP_001129608 /// NP_001129609,NM_000991 /// NM_001136134 /// NM_001136135 /// NM_001136136 /// NM_001136137,0000184 // nuclear-transcribed mRNA catabolic process nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral reproduction // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral infectious cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement,0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation,0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // traceable author statement /// 0005515 // protein binding // inferred from physical interaction,Ribosomal_Proteins // GenMAPP,---,AB209627(10) AK096870(11) AK293736(11) BC010173(11) BC010182(11) BC011582(11) CR457024(11) ENST00000344063(11) ENST00000426763(10) ENST00000428193(10) ENST00000431533(10) ENST00000458349(11) ENST00000558752(10) ENST00000558815(11) ENST00000559463(11) ENST00000560055(11) ENST00000560583(11) ENST00000560881(10) NM_000991(11) NM_001136134(11) NM_001136135(11) NM_001136136(10) NM_001136137(10) U14969(11),AB209627 / / Homo sapiens mRNA for ribosomal protein L28 variant protein. // gb // 10 // --- /// AK096870 // Homo sapiens cDNA FLJ39551 fis clone RECTM2000220 highly similar to 60S RIBOSOMAL PROTEIN L28. // gb // 11 // --- /// AK293736 // Homo sapiens cDNA FLJ57954 complete cds highly similar to 60S ribosomal protein L28. // gb // 11 // --- /// BC010173 // Homo sapiens ribosomal protein L28 mRNA (cDNA clone MGC:20081 IMAGE:4054251) complete cds. // gb // 11 // --- /// BC010182 // Homo sapiens ribosomal protein L28 mRNA (cDNA clone MGC:20328 IMAGE:4301420) complete cds. // gb // 11 // --- /// BC011582 // Homo sapiens ribosomal protein L28 mRNA (cDNA clone MGC:20378 IMAGE:4561118) complete cds. // gb // 11 // --- /// CR457024 // Homo sapiens full open reading frame cDNA clone RZPDo834C0115D for gene RPL28 ribosomal protein L28; complete cds incl. stopcodon. // gb // 11 // --- /// ENST00000344063 // cdna:known chromosome:GRCh37:19:55896713:55903453:1 gene:ENSG00000108107 gene_b iotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000426763 // cdna:known chromosome:GRCh37:19:55897718:55903455:1 gene:ENSG00000108107 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 10 // --- /// ENST00000428193 // cdna:known chromosome:GRCh37:19:55897300:55898978:1 gene:ENSG00000108107 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// ENST00000431533 // cdna:known chromosome:GRCh37:19:55897300:55898404:1 gene:ENSG00000108107 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// ENST00000458349 // cdna:known chromosome:GRCh37:19:55897726:55903107:1 gene:ENSG00000108107 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000558752 // cdna:putative chromosome:GRCh37:19:55897725:55898599:1 gene:ENSG00000108107 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// ENST00000558815 // cdna:known chromosome:GRCh37:19:55897300:55903171:1 gene:ENSG00000108107 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000559463 // cdna:known chromosome:GRCh37:19:55897329:55899741:1 gene:ENSG00000108107 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000560055 // cdna:putative chromosome:GRCh37:19:55897304:55914612:1 gene:ENSG00000108107 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000560583 // cdna:known chromosome:GRCh37:19:55897302:55900256:1 gene:ENSG00000108107 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000560881 // cdna:known chromosome:GRCh37:19:55897311:55899711:1 gene:ENSG00000108107 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 10 // --- /// GENSCAN00000023828 // cdna:genscan chromosome:GRCh37:19:55897032:5 5899700:1 transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_000991 // Homo sapiens ribosomal protein L28 (RPL28) transcript variant 2 mRNA. // refseq // 11 // --- /// NM_001136134 // Homo sapiens ribosomal protein L28 (RPL28) transcript variant 1 mRNA. // refseq // 11 // --- /// NM_001136135 // Homo sapiens ribosomal protein L28 (RPL28) transcript variant 3 mRNA. // refseq // 11 // --- /// NM_001136136 // Homo sapiens ribosomal protein L28 (RPL28) transcript variant 4 mRNA. // refseq // 10 // --- /// NM_001136137 // Homo sapiens ribosomal protein L28 (RPL28) transcript variant 5 mRNA. // refseq // 10 // --- /// U14969 // Human ribosomal protein L28 mRNA complete cds. // gb // 11 // ---,GENSCAN00000026992 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000031996 // ensembl // 3 // Cross Hyb Matching Probes /// GENSCAN00000040365 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000558131 // ensembl // 8 // Cross Hyb Matching Probes /// ENST00000461223 // ensembl // 3 // Cross Hyb Matching Probes /// ENST00000398900 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000464124 // ensembl // 2 // Cross Hyb Matching Probes /// BC009885 // gb_htc // 11 // Negative Strand Matching Probes +200004_at,g4503538,gb:NM_001418.1 /DEF=Homo sapiens eukaryotic translation initiation factor 4 gamma 2 (EIF4G2) mRNA. /FEA=mRNA /GEN=EIF4G2 /PROD=eukaryotic translation initiation factor 4gamma 2 /DB_XREF=gi:4503538 /UG=Hs.183684 eukaryotic translation initiation factor 4 gamma 2 /FL=gb:U73824.1 gb:U76111.1 gb:NM_001418.1,NM_001418,Hs.183684,Hs.183684,chr11:10818601-10830471 (-) // 97.46 // p15.3,eukaryotic translation initiation factor 4 gamma 2,EIF4G2,chr11p15,full length,ENSG00000110321,1982,B4DZF2 /// D3DQV9 /// E9PCV8 /// E9PKF8 /// H0Y3P2 /// H0YCF8 /// H0YCH5 /// H0YD77 /// H0YD99 /// H0YDC0 /// H0YDP4 /// H0YE22 /// H0YE44 /// H0YE87 /// H0YEC5 /// H0YEI7 /// H0YEN8 /// H0YEW3 /// P78344 /// Q2TU89 /// Q3LIE0 /// Q59G42,---,602325,NP_001036024 /// NP_001166176 /// NP_001409,NM_001042559 /// NM_001172705 /// NM_001418,0006412 // translation // inferred from direct assay /// 0006412 // translation // traceable author statement /// 0006412 // translation // inferr ed from electronic annotation /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // inferred from direct assay /// 0007050 // cell cycle arrest // traceable author statement /// 0008219 // cell death // traceable author statement /// 0016070 // RNA metabolic process // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement,0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from direct assay,0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initi ation factor activity // inferred from direct assay /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008135 // translation factor activity nucleic acid binding // inferred from direct assay /// 0008135 // translation factor activity nucleic acid binding // traceable author statement,Circadian_Exercise // GenMAPP,IPR003307 // W2 domain // 3.3E-23 /// IPR003307 // W2 domain // 3.1E-23 /// IPR003890 // MIF4G-like type 3 // 3.4E-61 /// IPR003890 // MIF4G-like type 3 // 3.1E-61 /// IPR003891 // Initiation factor eIF-4 gamma MA3 // 4.4E-22 /// IPR003891 // Initiation factor eIF-4 gamma MA3 // 4.2E-22,AB063323(11) AB073654(11) AY513274(11) BC018746(11) BC018975(11) BC039851(11) BC043149(11) BC065276(11) BC111415(11) BC111548(11) BX647799(11) ENST00000339995(11) ENST00000396525(11) ENST00000525681(11) ENST00000526148(11) ENST00000532383(11) NM_001042559(11) NM_ 001172705(11) NM_001418(11) U73824(11) U76111(10),AB063323 // Homo sapiens mRNA for eukaryotic translation initiation factor 4 gamma 2 complete cds. // gb // 11 // --- /// AB073654 // Homo sapiens primary neuroblastoma cDNA clone:Nbla00315 full insert sequence. // gb // 11 // --- /// AK127230 // Homo sapiens cDNA FLJ45297 fis clone BRHIP3003395. // gb // 11 // --- /// AY513274 // Homo sapiens aging-associated protein 1 (AAG1) mRNA complete cds. // gb // 11 // --- /// BC018746 // Homo sapiens eukaryotic translation initiation factor 4 gamma 2 mRNA (cDNA clone MGC:31927 IMAGE:4299481) complete cds. // gb // 11 // --- /// BC018975 // Homo sapiens eukaryotic translation initiation factor 4 gamma 2 mRNA (cDNA clone MGC:20099 IMAGE:3951907) complete cds. // gb // 11 // --- /// BC039851 // Homo sapiens eukaryotic translation initiation factor 4 gamma 2 mRNA (cDNA clone MGC:48877 IMAGE:6066795) complete cds. // gb // 11 // --- /// BC043149 // Homo sapiens eukaryotic tr anslation initiation factor 4 gamma 2 mRNA (cDNA clone MGC:41891 IMAGE:5295212) complete cds. // gb // 11 // --- /// BC065276 // Homo sapiens eukaryotic translation initiation factor 4 gamma 2 mRNA (cDNA clone MGC:75160 IMAGE:6164568) complete cds. // gb // 11 // --- /// BC111415 // Homo sapiens eukaryotic translation initiation factor 4 gamma 2 mRNA (cDNA clone MGC:133054 IMAGE:40008735) complete cds. // gb // 11 // --- /// BC111548 // Homo sapiens eukaryotic translation initiation factor 4 gamma 2 mRNA (cDNA clone MGC:133053 IMAGE:40008727) complete cds. // gb // 11 // --- /// BX647799 // Homo sapiens mRNA; cDNA DKFZp686L178 (from clone DKFZp686L178). // gb // 11 // --- /// ENST00000339995 // cdna:known chromosome:GRCh37:11:10818601:10830657:-1 gene:ENSG00000110321 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000396525 // cdna:known chromosome:GRCh37:11:10818717:10830255:-1 gene:ENSG00000110321 gene_biotype:pro tein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000525681 // cdna:known chromosome:GRCh37:11:10818600:10829009:-1 gene:ENSG00000110321 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000526148 // cdna:known chromosome:GRCh37:11:10818597:10829520:-1 gene:ENSG00000110321 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000532383 // cdna:known chromosome:GRCh37:11:10818601:10829575:-1 gene:ENSG00000110321 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 11 // --- /// NM_001042559 // Homo sapiens eukaryotic translation initiation factor 4 gamma 2 (EIF4G2) transcript variant 2 mRNA. // refseq // 11 // --- /// NM_001172705 // Homo sapiens eukaryotic translation initiation factor 4 gamma 2 (EIF4G2) transcript variant 3 mRNA. // refseq // 11 // --- /// NM_001418 // Homo sapiens eukaryotic translation initiation factor 4 gamm a 2 (EIF4G2) transcript variant 1 mRNA. // refseq // 11 // --- /// U73824 // Human p97 mRNA complete cds. // gb // 11 // --- /// U76111 // Human translation repressor NAT1 mRNA complete cds. // gb // 10 // ---,--- +200005_at,g4503522,gb:NM_003753.1 /DEF=Homo sapiens eukaryotic translation initiation factor 3 subunit 7 (zeta 6667kD) (EIF3S7) mRNA. /FEA=mRNA /GEN=EIF3S7 /PROD=eukaryotic translation initiation factor 3 subunit 7 (zeta 6667kD) /DB_XREF=gi:4503522 /UG=Hs.55682 eukaryotic translation initiation factor 3 subunit 7 (zeta 6667kD) /FL=gb:BC000328.1 gb:BC000469.1 gb:U54558.1 gb:NM_003753.1,NM_003753,Hs.55682,Hs.55682,chr22:36906902-36925183 (-) // 96.01 // q12.3,eukaryotic translation initiation factor 3 subunit D,EIF3D,chr22q13.1,full length,ENSG00000100353,8664,A8MWD3 /// B0QYA3 /// B0QYA4 /// B0QYA5 /// B0QYA6 /// B0QYA7 /// B0QYA8 /// B4DVY1 /// B4E1K8 /// O15371,---,603915,NP_003744,NM_003753,0001732 // formation of translation initiation complex // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006413 // translational initiation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement,0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from electronic annotation,0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interac tion,Translation_Factors // GenMAPP,IPR007783 // Eukaryotic translation initiation factor 3 subunit 7 // 2.8E-215 /// IPR007783 // Eukaryotic translation initiation factor 3 subunit 7 // 2.4E-90 /// IPR007783 // Eukaryotic translation initiation factor 3 subunit 7 // 5.7E-79 /// IPR007783 // Eukaryotic translation initiation factor 3 subunit 7 // 9.9E-214 /// IPR007783 // Eukaryotic translation initiation factor 3 subunit 7 // 2.5E-18 /// IPR007783 // Eukaryotic translation initiation factor 3 subunit 7 // 6.8E-184,AK300199(11) AK301284(11) AK303884(11) BC000328(11) BC000469(11) BC014912(11) BC080515(11) BC093100(11) BC093686(11) BC101477(11) BT007381(11) CR456489(11) ENST00000216190(11) ENST00000397177(11) ENST00000405442(11) ENST00000426531(11) ENST00000458572(9) ENST00000462641(11) ENST00000541106(11) NM_003753(11) U54558(11),AK300199 // Homo sapiens cDNA FLJ53917 complete cds highly similar to Eukaryotic translation initiation factor 3 subunit 7. // gb // 11 // -- - /// AK301284 // Homo sapiens cDNA FLJ51552 complete cds highly similar to Eukaryotic translation initiation factor 3 subunit 7. // gb // 11 // --- /// AK303884 // Homo sapiens cDNA FLJ58383 complete cds highly similar to Eukaryotic translation initiation factor 3 subunit 7. // gb // 11 // --- /// BC000328 // Homo sapiens eukaryotic translation initiation factor 3 subunit D mRNA (cDNA clone MGC:8514 IMAGE:2822380) complete cds. // gb // 11 // --- /// BC000469 // Homo sapiens eukaryotic translation initiation factor 3 subunit D mRNA (cDNA clone MGC:8588 IMAGE:2961048) complete cds. // gb // 11 // --- /// BC014912 // Homo sapiens eukaryotic translation initiation factor 3 subunit D mRNA (cDNA clone MGC:17258 IMAGE:3915705) complete cds. // gb // 11 // --- /// BC071903 // Homo sapiens eukaryotic translation initiation factor 3 subunit 7 zeta 66/67kDa mRNA (cDNA clone IMAGE:6597035) **** WARNING: chimeric clone ****. // gb_htc // 11 // --- /// BC080515 // Homo sa piens eukaryotic translation initiation factor 3 subunit D mRNA (cDNA clone MGC:99492 IMAGE:2822489) complete cds. // gb // 11 // --- /// BC093100 // Homo sapiens eukaryotic translation initiation factor 3 subunit D mRNA (cDNA clone MGC:111783 IMAGE:6527393) complete cds. // gb // 11 // --- /// BC093686 // Homo sapiens eukaryotic translation initiation factor 3 subunit D mRNA (cDNA clone MGC:120721 IMAGE:7939531) complete cds. // gb // 11 // --- /// BC101477 // Homo sapiens eukaryotic translation initiation factor 3 subunit D mRNA (cDNA clone MGC:126526 IMAGE:8068983) complete cds. // gb // 11 // --- /// BT007381 // Homo sapiens eukaryotic translation initiation factor 3 subunit 7 zeta 66/67kDa mRNA complete cds. // gb // 11 // --- /// CR456489 // Homo sapiens EIF3S7 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.EIF3S7). // gb // 11 // --- /// ENST00000216190 // cdna:known chromosome:GRCh37:22:36906897:36925483:-1 gene:ENSG00000100353 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000397177 // cdna:known chromosome:GRCh37:22:36906902:36925192:-1 gene:ENSG00000100353 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000405442 // cdna:known chromosome:GRCh37:22:36906946:36924944:-1 gene:ENSG00000100353 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000426531 // cdna:putative chromosome:GRCh37:22:36907624:36912978:-1 gene:ENSG00000100353 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000458572 // cdna:putative chromosome:GRCh37:22:36907748:36915548:-1 gene:ENSG00000100353 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 9 // --- /// ENST00000462641 // cdna:known chromosome:GRCh37:22:36906915:36908976:-1 gene:ENSG00000100353 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 11 // --- /// ENST00000541106 // cdna:known chromosome:GRCh37:22:36906904:36925213:-1 gene:ENSG00000100353 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000024412 // cdna:genscan chromosome:GRCh37:22:36907034:36933651:-1 transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_003753 // Homo sapiens eukaryotic translation initiation factor 3 subunit D (EIF3D) mRNA. // refseq // 11 // --- /// U54558 // Homo sapiens translation initiation factor eIF3 p66 subunit mRNA complete cds. // gb // 11 // ---,ENST00000478547 // ensembl // 6 // Cross Hyb Matching Probes +200006_at,g6005748,gb:NM_007262.1 /DEF=Homo sapiens RNA-binding protein regulatory subunit (DJ-1) mRNA. /FEA=mRNA /GEN=DJ-1 /PROD=RNA-binding protein regulatory subunit /DB_XREF=gi:6005748 /UG=Hs.10958 RNA-binding protein regulatory subunit /FL=gb:AF021819.1 gb:NM_007262.1 gb:D61380.1,NM_007262,Hs.10958,Hs.419640,chr1:8022839-8045342 (+) // 95.37 // p36.23,parkinson protein 7,PARK7,chr1p36.23,full length,ENSG00000116288,11315,Q99497,---,602533 /// 606324,NP_001116849 /// NP_009193,NM_001123377 /// NM_007262,0001963 // synaptic transmission dopaminergic // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007005 // mitochondrio n organization // inferred from sequence or structural similarity /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007338 // single fertilization // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0032091 // negative regulation of protein binding // inferred from direct assay /// 0034599 // cellular response to oxidative stress // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0042743 // hydrogen peroxide metabolic process // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from direct assay /// 0043526 // neuroprotection // inferred from direct assay /// 0050727 // regulation of inflammatory respo nse // inferred from sequence or structural similarity /// 0050727 // regulation of inflammatory response // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0050821 // protein stabilization // inferred from electronic annotation /// 0051583 // dopamine uptake involved in synaptic transmission // inferred from electronic annotation /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0060081 // membrane hyperpolarization // inferred from electronic annotation /// 0060548 // negative regulation of cell death // inferred from direct assay /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0060765 // regulation of androgen receptor signaling pathway // inferred from direct assay /// 0070301 // cellular response to hydrogen peroxide // inferred from direct assay /// 0070301 // cellular response to hydrogen peroxide // inferred from electronic annota tion /// 2000277 // positive regulation of oxidative phosphorylation uncoupler activity // inferred from electronic annotation /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype,0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation,0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0004601 // peroxidase activity // inferred from sequence or structural similarity /// 0004601 // peroxidase activity // inferred from electronic annot ation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0051920 // peroxiredoxin activity // inferred from electronic annotation,---,IPR002818 // ThiJ/PfpI // 2.9E-37,AB073864(9) AF021819(11) AK091679(11) BC008188(11) D61380(11) ENST00000338639(11) ENST00000377488(9) ENST00000377491(11) ENST00000377493(11) ENST00000469225(11) ENST00000493373(9) ENST00000493678(11) NM_001123377(11) NM_007262(11),AB073864 // Homo sapiens mRNA for DJ-1 complete cds. // gb // 9 // --- /// AF021819 // Homo sapiens RNA-binding protein regulatory subunit mRNA complete cds. // gb // 11 // --- /// AK091679 // Homo sapiens cDNA FLJ34360 fis clone FEBRA2014198. // gb // 11 // --- /// BC008188 // Homo sapiens Parkinson disease (autosomal recessive early onset) 7 mRNA (cDNA clone MGC:5243 IMAGE:2901102) complete cds. // gb // 11 // --- /// D61380 // Homo sapiens mRNA for DJ-1 protein complete cds. // gb // 11 // --- /// ENST00000338639 // cdna:known chromosome:GRCh37:1:8021723:8045339:1 gene:ENSG00000116288 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000377488 // cdna:known chromosome:GRCh37:1:8022029:8045171:1 gene:ENSG00000116288 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 9 // --- /// ENST00000377491 // cdna:known chromosome:GRCh37:1:8021954:8045310:1 gene:ENSG00000116288 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000377493 // cdna:known chromosome:GRCh37:1:8021761:8045341:1 gene:ENSG00000116288 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 11 // --- /// ENST00000469225 // cdna:known chro mosome:GRCh37:1:8025411:8045342:1 gene:ENSG00000116288 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 11 // --- /// ENST00000493373 // cdna:known chromosome:GRCh37:1:8014351:8045112:1 gene:ENSG00000116288 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 9 // --- /// ENST00000493678 // cdna:known chromosome:GRCh37:1:8021752:8045565:1 gene:ENSG00000116288 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_001123377 // Homo sapiens parkinson protein 7 (PARK7) transcript variant 2 mRNA. // refseq // 11 // --- /// NM_007262 // Homo sapiens parkinson protein 7 (PARK7) transcript variant 1 mRNA. // refseq // 11 // ---,GENSCAN00000012447 // ensembl // 7 // Cross Hyb Matching Probes +200007_at,g4507210,gb:NM_003134.1 /DEF=Homo sapiens signal recognition particle 14kD (homologous Alu RNA-binding protein) (SRP14) mRNA. /FEA=mRNA /GEN=SRP14 /PROD=signal recognition particle 14kD (homologous AluRNA-binding protein) /DB_XREF=gi:4507210 /UG=Hs.180394 signal recognition particle 14kD (homologous Alu RNA-binding protein) /FL=gb:NM_003134.1 gb:U07857.1,NM_003134,Hs.180394,Hs.533732,chr15:40328242-40331336 (-) // 87.93 // q15.1,signal recognition particle 14kDa (homologous Alu RNA binding protein),SRP14,chr15q22,full length,ENSG00000140319,6727,H0YLW0 /// P37108,---,600708,NP_003125,NM_003134,0006412 // translation // traceable author statement /// 0006613 // cotranslational protein targeting to membrane // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from electronic annotation /// 0010467 / / gene expression // traceable author statement /// 0042493 // response to drug // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045047 // protein targeting to ER // inferred from mutant phenotype /// 0045900 // negative regulation of translational elongation // inferred from electronic annotation,0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005786 // signal recognition particle endoplasmic reticulum targeting // inferred from direct assay /// 0005786 // signal recognition particle endoplasmic reticulum targeting // inferred from electronic annotation /// 0005786 // signal recognition particle endoplasmic reticulum targeting // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0048500 // signal recognition particle // inf erred from electronic annotation,0003723 // RNA binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0008312 // 7S RNA binding // inferred from electronic annotation /// 0008312 // 7S RNA binding // traceable author statement /// 0030942 // endoplasmic reticulum signal peptide binding // inferred from electronic annotation,---,IPR003210 // Signal recognition particle SRP14 subunit // 1.4E-36,AB061546(11) BC035495(11) BC051006(11) BC071716(11) BC100031(11) ENST00000267884(11) ENST00000558527(11) ENST00000558720(11) ENST00000559439(10) ENST00000559475(9) ENST00000560773(10) NM_003134(11) U07857(11),AB061546 // Homo sapiens SRP14 mRNA for signal recognition particle 14kD complete cds. // gb // 11 // --- /// BC035495 // Homo sapiens signal recognition particle 14kDa (homologous Alu RNA binding protein) mRNA (cDNA clone MGC:14326 IMAGE:4298087) complete cds. // gb // 11 // --- /// BC051006 // Homo sapiens signal recogniti on particle 14kDa (homologous Alu RNA binding protein) mRNA (cDNA clone IMAGE:4577398) with apparent retained intron. // gb_htc // 11 // --- /// BC052615 // Homo sapiens cDNA clone IMAGE:6295740 **** WARNING: chimeric clone ****. // gb_htc // 11 // --- /// BC071716 // Homo sapiens signal recognition particle 14kDa (homologous Alu RNA binding protein) mRNA (cDNA clone MGC:88011 IMAGE:4476669) complete cds. // gb // 11 // --- /// BC100031 // Homo sapiens signal recognition particle 14kDa (homologous Alu RNA binding protein) mRNA (cDNA clone MGC:111680 IMAGE:2847600) complete cds. // gb // 11 // --- /// ENST00000267884 // cdna:known chromosome:GRCh37:15:40327940:40331389:-1 gene:ENSG00000140319 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000558527 // cdna:known chromosome:GRCh37:15:40328242:40331365:-1 gene:ENSG00000140319 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 11 // --- /// EN ST00000558720 // cdna:putative chromosome:GRCh37:15:40328243:40331251:-1 gene:ENSG00000140319 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000559439 // cdna:known chromosome:GRCh37:15:40328455:40331074:-1 gene:ENSG00000140319 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 10 // --- /// ENST00000559475 // cdna:known chromosome:GRCh37:15:40328505:40331296:-1 gene:ENSG00000140319 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 9 // --- /// ENST00000560773 // cdna:putative chromosome:GRCh37:15:40328444:40331357:-1 gene:ENSG00000140319 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// NM_003134 // Homo sapiens signal recognition particle 14kDa (homologous Alu RNA binding protein) (SRP14) mRNA. // refseq // 11 // --- /// U07857 // Human 18 kDa Alu RNA binding protein mRNA complete cds. // gb // 11 // ---,U92988 // gb // 5 // Cross Hyb Matching Probes /// GENSCAN00000001882 // ensembl // 1 // Cross Hyb Matching Probes /// GENSCAN00000008301 // ensembl // 6 // Cross Hyb Matching Probes /// GENSCAN00000029550 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000559081 // ensembl // 5 // Cross Hyb Matching Probes /// ENST00000558243 // ensembl // 5 // Cross Hyb Matching Probes /// ENST00000533701 // ensembl // 2 // Cross Hyb Matching Probes +200008_s_at,g285974,gb:D13988.1 /DEF=Human rab GDI mRNA complete cds. /FEA=mRNA /PROD=human rab GDI /DB_XREF=gi:285974 /UG=Hs.56845 GDP dissociation inhibitor 2 /FL=gb:BC005145.1 gb:D13988.1 gb:NM_001494.2,NM_001494,Hs.56845,Hs.299055,chr10:5807948-5855215 (-) // 96.95 // p15.1,GDP dissociation inhibitor 2,GDI2,chr10p15,full length,ENSG00000057608,2665,B3KVE3 /// B4DLV7 /// E7EU23 /// E9PFL7 /// P50395 /// Q5SX91 /// Q6IAT1 /// Q8TB95,---,600767,NP_001108628 /// NP_001485,NM_001115156 /// NM_001494,0007165 // signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement,0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation,0005093 // Rab GDP-dissociation inhibitor activity // inferred from electronic annotation /// 0005093 // Rab GDP-dissociation inhibitor activity // traceable author statement /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction,---,IPR018203 // GDP dissociation inhibitor // 3.3E-228 /// IPR018203 // GDP dissociation inhibitor // 4.0E-89 /// IPR018203 // GDP dissociation inhibitor // 1.2E-44 /// IPR018203 // GDP disso ciation inhibitor // 9.4E-157 /// IPR018203 // GDP dissociation inhibitor // 8.1E-218 /// IPR018203 // GDP dissociation inhibitor // 2.1E-91,AB451295(11) AK094671(11) AK122841(10) AK297177(11) AK297554(11) BC005145(11) BT006868(11) CR457073(11) D13988(11) ENST00000380132(11) ENST00000380153(10) ENST00000380181(11) ENST00000380191(11) ENST00000447751(10) ENST00000479928(11) NM_001115156(11) NM_001494(11),AB451295 // Homo sapiens GDI2 mRNA for GDP dissociation inhibitor 2 isoform 1 complete cds clone: FLJ08144AAAN. // gb // 11 // --- /// AK094671 // Homo sapiens cDNA FLJ37352 fis clone BRAMY2021982. // gb // 11 // --- /// AK122841 // Homo sapiens cDNA FLJ16452 fis clone BRAWH3002467 highly similar to RAB GDP DISSOCIATION INHIBITOR BETA. // gb // 10 // --- /// AK297177 // Homo sapiens cDNA FLJ60299 complete cds highly similar to Rab GDP dissociation inhibitor beta. // gb // 11 // --- /// AK297554 // Homo sapiens cDNA FLJ60305 complete cds highly similar to Rab GDP dissoc iation inhibitor beta. // gb // 11 // --- /// BC005145 // Homo sapiens GDP dissociation inhibitor 2 mRNA (cDNA clone MGC:2027 IMAGE:3504736) complete cds. // gb // 11 // --- /// BT006868 // Homo sapiens GDP dissociation inhibitor 2 mRNA complete cds. // gb // 11 // --- /// CR457073 // Homo sapiens full open reading frame cDNA clone RZPDo834H0511D for gene GDI2 GDP dissociation inhibitor 2; complete cds incl. stopcodon. // gb // 11 // --- /// D13988 // Homo sapiens rab GDI mRNA complete cds. // gb // 11 // --- /// ENST00000380132 // cdna:known chromosome:GRCh37:10:5807884:5855395:-1 gene:ENSG00000057608 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000380153 // cdna:known chromosome:GRCh37:10:5807187:5855512:-1 gene:ENSG00000057608 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// ENST00000380181 // cdna:known chromosome:GRCh37:10:5807917:5855374:-1 gene:ENSG00000057608 gene_biotyp e:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000380191 // cdna:known chromosome:GRCh37:10:5807186:5855512:-1 gene:ENSG00000057608 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000447751 // cdna:known chromosome:GRCh37:10:5807812:5827885:-1 gene:ENSG00000057608 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// ENST00000479928 // cdna:known chromosome:GRCh37:10:5807192:5811352:-1 gene:ENSG00000057608 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 11 // --- /// GENSCAN00000042474 // cdna:genscan chromosome:GRCh37:10:5807969:5940902:-1 transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_001115156 // Homo sapiens GDP dissociation inhibitor 2 (GDI2) transcript variant 2 mRNA. // refseq // 11 // --- /// NM_001494 // Homo sapiens GDP dissociation inhibitor 2 (GDI2) transcript variant 1 mRNA. // refseq // 11 // ---,GENSCAN00000009624 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000028799 // ensembl // 7 // Cross Hyb Matching Probes /// ENST00000445131 // ensembl // 7 // Cross Hyb Matching Probes /// ENST00000429312 // ensembl // 2 // Cross Hyb Matching Probes +200009_at,g6598322,gb:NM_001494.2 /DEF=Homo sapiens GDP dissociation inhibitor 2 (GDI2) mRNA. /FEA=mRNA /GEN=GDI2 /PROD=GDP dissociation inhibitor 2 /DB_XREF=gi:6598322 /UG=Hs.56845 GDP dissociation inhibitor 2 /FL=gb:BC005145.1 gb:D13988.1 gb:NM_001494.2,NM_001494,Hs.56845,Hs.299055,chr10:5807185-5855373 (-) // 99.34 // p15.1,GDP dissociation inhibitor 2,GDI2,chr10p15,full length,ENSG00000057608,2665,B3KVE3 /// B4DLV7 /// E9PFL7 /// P50395 /// Q6IAT1 /// Q8TB95,---,600767,NP_001108628 /// NP_001485,NM_001115156 /// NM_001494,0007165 // signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0051056 // regulation of small GTPase m ediated signal transduction // traceable author statement,0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation,0005093 // Rab GDP-dissociation inhibitor activity // inferred from electronic annotation /// 0005093 // Rab GDP-dissociation inhibitor activity // traceable author statement /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction,---,IPR018203 // GDP dissociation inhibitor // 3.3E-228 /// IPR018203 // GDP dissociation inhibitor // 2.1E-91,AK094671(11) AK122841(10) BC005145(11) ENST0000038015 3(11) ENST00000380191(11) ENST00000479928(11) NM_001115156(11) NM_001494(11),AK094671 // Homo sapiens cDNA FLJ37352 fis clone BRAMY2021982. // gb // 11 // --- /// AK122841 // Homo sapiens cDNA FLJ16452 fis clone BRAWH3002467 highly similar to RAB GDP DISSOCIATION INHIBITOR BETA. // gb // 10 // --- /// BC005145 // Homo sapiens GDP dissociation inhibitor 2 mRNA (cDNA clone MGC:2027 IMAGE:3504736) complete cds. // gb // 11 // --- /// ENST00000380153 // cdna:known chromosome:GRCh37:10:5807187:5855512:-1 gene:ENSG00000057608 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000380191 // cdna:known chromosome:GRCh37:10:5807186:5855512:-1 gene:ENSG00000057608 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000479928 // cdna:known chromosome:GRCh37:10:5807192:5811352:-1 gene:ENSG00000057608 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 11 // --- /// NM_001115156 // Homo sapiens GDP dissociation inhibitor 2 (GDI2) transcript variant 2 mRNA. // refseq // 11 // --- /// NM_001494 // Homo sapiens GDP dissociation inhibitor 2 (GDI2) transcript variant 1 mRNA. // refseq // 11 // ---,AK297554 // gb // 2 // Cross Hyb Matching Probes +200010_at,g4506594,gb:NM_000975.1 /DEF=Homo sapiens ribosomal protein L11 (RPL11) mRNA. /FEA=mRNA /GEN=RPL11 /PROD=ribosomal protein L11 /DB_XREF=gi:4506594 /UG=Hs.179943 ribosomal protein L11 /FL=gb:L05092.1 gb:NM_000975.1,NM_000975,Hs.179943,Hs.719951,chr1:24019097-24022913 (+) // 97.29 // p36.11,ribosomal protein L11,RPL11,chr1p36.1-p35,full length,ENSG00000142676,6135,P62913 /// Q08ES8 /// Q5VVC8 /// Q5VVC9 /// Q5VVD0,---,604175 /// 612562,NP_000966 /// NP_001186731,NM_000975 /// NM_001199802,0000184 // nuclear-transcribed mRNA catabolic process nonsense-mediated decay // traceable author statement /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // inferred from electronic annotation /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable autho r statement /// 0006415 // translational termination // traceable author statement /// 0006605 // protein targeting // inferred from mutant phenotype /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral reproduction // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral infectious cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0034504 // protein localization to nucleus // inferred from sequence or structural similarity /// 0042273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement,0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation,0003723 // RNA binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0003735 // structural constituent of ribosome // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019843 // rRNA binding // inferred from electronic annotation,Ribosomal_Proteins // GenMAPP /// Ribosomal_Proteins // GenMAPP,IPR002132 // Ribosomal protein L5 // 8.0E-27 /// IPR002132 // Ribosomal protein L5 // 3.4E-23 /// IPR002132 // Ribosomal protein L5 // 7.1E-25 /// IPR002132 // Ribosomal protein L5 // 1.8E-23 /// IPR002132 // Ribosomal protein L5 // 7.5E-27 /// IPR002132 // Ribosomal protein L5 // 3.3E-23,BC018970(9) ENST00000374550(9) ENST00000443624(11) ENST00000458455(11) ENST00000482370(9) L05092(9) NM_000975(9) NM_001199802(9),AK225425 // Homo sapiens mRNA for Growth/differentiation factor 15 precursor variant clone: HRC10120. // gb // 9 // --- /// BC018970 // Homo sapiens ribosomal protein L11 mRNA (cDNA clone MGC:19586 IMAGE:4337066) complete cds. // gb // 9 // --- /// ENST00000374550 // cdna:known chromosome:GRCh37:1:24018269:24022915:1 gene:ENSG00000142676 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 9 // --- /// ENST00000443624 // cdna:known chrom osome:GRCh37:1:24019099:24021885:1 gene:ENSG00000142676 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000458455 // cdna:known chromosome:GRCh37:1:24019099:24022618:1 gene:ENSG00000142676 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000482370 // cdna:known chromosome:GRCh37:1:24018796:24022908:1 gene:ENSG00000142676 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 9 // --- /// GENSCAN00000021323 // cdna:genscan chromosome:GRCh37:1:23979038:24037721:1 transcript_biotype:protein_coding // ensembl // 9 // --- /// L05092 // Homo sapiens ribosomal protein L11 mRNA complete cds. // gb // 9 // --- /// NM_000975 // Homo sapiens ribosomal protein L11 (RPL11) transcript variant 1 mRNA. // refseq // 9 // --- /// NM_001199802 // Homo sapiens ribosomal protein L11 (RPL11) transcript variant 2 mRNA. // refseq // 9 // ---,AY871274 // gb // 8 // Cross Hyb Matching Probes /// GENSCAN00000045998 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000467075 // ensembl // 8 // Cross Hyb Matching Probes /// ENST00000498453 // ensembl // 2 // Cross Hyb Matching Probes +200011_s_at,g4502202,gb:NM_001659.1 /DEF=Homo sapiens ADP-ribosylation factor 3 (ARF3) mRNA. /FEA=mRNA /GEN=ARF3 /PROD=ADP-ribosylation factor 3 /DB_XREF=gi:4502202 /UG=Hs.119177 ADP-ribosylation factor 3 /FL=gb:M74491.1 gb:NM_001659.1,NM_001659,Hs.119177,Hs.119177,chr12:49329991-49351310 (-) // 98.47 // q13.12,ADP-ribosylation factor 3,ARF3,chr12q13,full length,ENSG00000134287,377,B4DT71 /// B4E190 /// B7Z9K5 /// B7ZB63 /// F5H0C7 /// F5H1V1 /// F5H423 /// F5H6T5 /// P61204,---,103190,NP_001650,NM_001659,0006184 // GTP catabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation,0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation,0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // traceable author statement,---,IPR001019 // Guanine nucleotide binding protein (G-protein) alpha subunit // 6.0E-12 /// IPR001806 // Small GTPase superfamily // 1.2E-16 /// IPR006689 // Small GTPase superfamily ARF/SAR type // 2.6E-82 /// IPR006762 // Gtr1/RagA G protein // 7.4E-15 /// IPR013684 // Mitochondrial Rho-like // 1.5E-12 /// IPR019009 // Signal recognition particle receptor beta subunit // 2.6E-18,BC007647(11) BC017565(11) BC028402(11) ENST00000256682(11) M74491(11) NM_001659(11),BC007647 // Homo sapiens ADP-ribosylation factor 3 mRNA (cDNA clone MGC:15946 IM AGE:3537965) complete cds. // gb // 11 // --- /// BC017565 // Homo sapiens ADP-ribosylation factor 3 mRNA (cDNA clone MGC:1802 IMAGE:2967578) complete cds. // gb // 11 // --- /// BC028402 // Homo sapiens ADP-ribosylation factor 3 mRNA (cDNA clone MGC:33515 IMAGE:4817874) complete cds. // gb // 11 // --- /// ENST00000256682 // cdna:known chromosome:GRCh37:12:49329506:49351334:-1 gene:ENSG00000134287 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// M74491 // Human ADP-ribosylation factor 3 mRNA complete cds. // gb // 11 // --- /// NM_001659 // Homo sapiens ADP-ribosylation factor 3 (ARF3) mRNA. // refseq // 11 // ---,XR_132991 // refseq // 11 // Negative Strand Matching Probes +200012_x_at,g4506610,gb:NM_000982.1 /DEF=Homo sapiens ribosomal protein L21 (gene or pseudogene) (RPL21) mRNA. /FEA=mRNA /GEN=RPL21 /PROD=ribosomal protein L21 (gene or pseudogene) /DB_XREF=gi:4506610 /UG=Hs.184108 ribosomal protein L21 /FL=gb:BC001603.1 gb:NM_000982.1 gb:U14967.1 gb:U25789.1,NM_000982,Hs.184108,Hs.381123,chr11:9681951-9682503 (+) // 95.37 // p15.4 /// chr12:77054151-77054708 (+) // 93.06 // q21.2 /// chr13:27827898-27830700 (+) // 93.95 // q12.2 /// chr17:3568480-3569034 (+) // 94.66 // p13.2 /// chr7:20042354-20042909 (+) // 97.15 // p21.1 /// chr1:212224827-212225381 (-) // 88.61 // q32.3 /// chr10:122114174-122114728 (-) // 97.33 // q26.12 /// chr10:29187891-29188446 (-) // 95.2 // p12.1 /// chr14:90832996-90833556 (-) // 92.88 // q32.11 /// chr16:9250216-9250771 (-) // 96.44 // p13.2 /// chr3:145538996-145542559 (-) // 94.84 // q24 /// chr4:128733833-128734388 (-) // 93.06 // q28.1,ribosomal protein L21 /// ribosomal protein L21 pseudogene 28 /// smal l nucleolar RNA H/ACA box 27 /// small nucleolar RNA C/D box 102,RPL21 /// RPL21P28 /// SNORA27 /// SNORD102,chr13q12.2 /// chr1q32.3,full length,ENSG00000122026 /// ENSG00000213860 /// ENSG00000220749 /// ENSG00000220793 /// ENSG00000220842 /// ENSG00000229605 /// ENSG00000239470 /// ENSG00000244021,100131205 /// 26771 /// 6144 /// 619499,G3V1B3 /// P46778 /// Q6IAX2,EC:3.6.5.3,603636,NP_000973,NM_000982 /// NR_002574 /// NR_002575 /// NR_026911,0000184 // nuclear-transcribed mRNA catabolic process nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cot ranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral reproduction // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral infectious cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement,0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation,0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // traceable author statement,Ribosomal_Proteins // GenMAPP,IPR001147 // Ribosomal protein L21e // 4.4E-51 /// IPR001147 // Ribosomal protein L21e // 1.2E-42,AF086172(11) BC001603(11) BC007505(11) BC062981(11) BC070184(11) BC070323(11) BC070330(11) BC071902(11) BC104667(11) BX647669(11) CR457032(11) U14967(10) U25789(11) GENSCAN00000004089(11) GENSCAN00000011699(11) GENSCAN00000014150(11) GENSCAN00000020588(11) GENSCAN00000025058(11) GENSCAN00000031766(11) GENSCAN00000035485(10) ENST00000311549(11) ENST00000461690(11) ENST00000272274(11) ENST00000319826(11) ENST00000326092(11) ENST00000493317(9) ENST00000483765(11) ENST00000485756(10) ENST00000401418(9) ENST00000327274(10) ENST00000472300(11) ENST00000540439(11) ENST00000484462( 11) ENST00000403916(11) ENST00000495531(11) ENST00000536557(11) ENST00000480465(11) ENST00000395291(11) ENST00000491435(10) ENST00000396599(11) ENST00000398581(11) NM_000982(11) NR_026911(10),AF086172 // Homo sapiens full length insert cDNA clone ZB89E10. // gb // 11 // --- /// BC001603 // Homo sapiens ribosomal protein L21 mRNA (cDNA clone MGC:2150 IMAGE:3543702) complete cds. // gb // 11 // --- /// BC007505 // Homo sapiens ribosomal protein L21 mRNA (cDNA clone MGC:4136 IMAGE:2964441) complete cds. // gb // 11 // --- /// BC062981 // Homo sapiens ribosomal protein L21 mRNA (cDNA clone MGC:71252 IMAGE:6084268) complete cds. // gb // 11 // --- /// BC070184 // Homo sapiens ribosomal protein L21 mRNA (cDNA clone MGC:88165 IMAGE:4281405) complete cds. // gb // 11 // --- /// BC070323 // Homo sapiens ribosomal protein L21 mRNA (cDNA clone MGC:88326 IMAGE:4248655) complete cds. // gb // 11 // --- /// BC070330 // Homo sapiens ribosomal protein L21 mRNA (cDNA clone MGC:883 34 IMAGE:3931616) complete cds. // gb // 11 // --- /// BC071902 // Homo sapiens ribosomal protein L21 mRNA (cDNA clone MGC:88581 IMAGE:4901492) complete cds. // gb // 11 // --- /// BC104667 // Homo sapiens ribosomal protein L21 mRNA (cDNA clone MGC:104275 IMAGE:6724053) complete cds. // gb // 11 // --- /// BX647669 // Homo sapiens mRNA; cDNA DKFZp686C06101 (from clone DKFZp686C06101). // gb // 11 // --- /// CR457032 // Homo sapiens full open reading frame cDNA clone RZPDo834D0315D for gene RPL21 ribosomal protein L21; complete cds incl. stopcodon. // gb // 11 // --- /// ENST00000272274 // cdna:known chromosome:GRCh37:13:27825716:27830705:1 gene:ENSG00000122026 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000311549 // cdna:known chromosome:GRCh37:13:27825446:27830705:1 gene:ENSG00000122026 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000319826 // cdna:known chromosome: GRCh37:13:27825720:27830705:1 gene:ENSG00000122026 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000326092 // cdna:known chromosome:GRCh37:13:27825734:27830705:1 gene:ENSG00000122026 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000327274 // cdna:pseudogene chromosome:GRCh37:1:212224829:212225371:-1 gene:ENSG00000220749 gene_biotype:pseudogene transcript_biotype:processed_pseudogene // ensembl // 10 // --- /// ENST00000395291 // cdna:pseudogene chromosome:GRCh37:10:29187931:29188422:-1 gene:ENSG00000229605 gene_biotype:pseudogene transcript_biotype:processed_pseudogene // ensembl // 11 // --- /// ENST00000396599 // cdna:pseudogene chromosome:GRCh37:7:20042388:20042870:1 gene:ENSG00000213860 gene_biotype:pseudogene transcript_biotype:processed_pseudogene // ensembl // 11 // --- /// ENST00000398581 // cdna:pseudogene chromosome:GRCh37:7:20042346:20042909:1 gene:ENSG00000213860 g ene_biotype:pseudogene transcript_biotype:processed_pseudogene // ensembl // 11 // --- /// ENST00000401418 // cdna:pseudogene chromosome:GRCh37:1:212224866:212225348:-1 gene:ENSG00000220749 gene_biotype:pseudogene transcript_biotype:processed_pseudogene // ensembl // 9 // --- /// ENST00000403916 // cdna:pseudogene chromosome:GRCh37:16:9250219:9250761:-1 gene:ENSG00000220793 gene_biotype:pseudogene transcript_biotype:processed_pseudogene // ensembl // 11 // --- /// ENST00000461690 // cdna:known chromosome:GRCh37:13:27825698:27830828:1 gene:ENSG00000122026 gene_biotype:protein_coding transcript_biotype:nonsense_mediated_decay // ensembl // 11 // --- /// ENST00000472300 // cdna:pseudogene chromosome:GRCh37:11:9681985:9682467:1 gene:ENSG00000239470 gene_biotype:pseudogene transcript_biotype:processed_pseudogene // ensembl // 11 // --- /// ENST00000480465 // cdna:pseudogene chromosome:GRCh37:10:29187925:29188413:-1 gene:ENSG00000229605 gene_biotype:pseudogene transcript_biotype:p rocessed_pseudogene // ensembl // 11 // --- /// ENST00000483765 // cdna:known chromosome:GRCh37:13:27827902:27830682:1 gene:ENSG00000122026 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 11 // --- /// ENST00000484462 // cdna:pseudogene chromosome:GRCh37:16:9250259:9250738:-1 gene:ENSG00000220793 gene_biotype:pseudogene transcript_biotype:processed_pseudogene // ensembl // 11 // --- /// ENST00000485756 // cdna:known chromosome:GRCh37:13:27829081:27830685:1 gene:ENSG00000122026 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 10 // --- /// ENST00000491435 // cdna:pseudogene chromosome:GRCh37:4:128733875:128734355:-1 gene:ENSG00000244021 gene_biotype:pseudogene transcript_biotype:processed_pseudogene // ensembl // 10 // --- /// ENST00000493317 // cdna:known chromosome:GRCh37:13:27827842:27830444:1 gene:ENSG00000122026 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 9 // --- /// ENST00000495531 // cdna:pseudogene chromosome:GRCh37:10:122114213:122114695:-1 gene:ENSG00000220842 gene_biotype:pseudogene transcript_biotype:processed_pseudogene // ensembl // 11 // --- /// ENST00000536557 // cdna:pseudogene chromosome:GRCh37:10:122114177:122114718:-1 gene:ENSG00000220842 gene_biotype:pseudogene transcript_biotype:processed_pseudogene // ensembl // 11 // --- /// ENST00000540439 // cdna:pseudogene chromosome:GRCh37:11:9681946:9682503:1 gene:ENSG00000239470 gene_biotype:pseudogene transcript_biotype:processed_pseudogene // ensembl // 11 // --- /// GENSCAN00000004089 // cdna:genscan chromosome:GRCh37:10:29187931:29208125:-1 transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000011699 // cdna:genscan chromosome:GRCh37:11:9681985:9682467:1 transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000014150 // cdna:genscan chromosome:GRCh37:13:27827914:27830662:1 transcript_biotype:protein_coding // ensembl // 11 // --- /// GENS CAN00000020588 // cdna:genscan chromosome:GRCh37:7:20042388:20042870:1 transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000025058 // cdna:genscan chromosome:GRCh37:16:9250256:9250738:-1 transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000031766 // cdna:genscan chromosome:GRCh37:10:122114213:122114695:-1 transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000035485 // cdna:genscan chromosome:GRCh37:4:128733873:128734355:-1 transcript_biotype:protein_coding // ensembl // 10 // --- /// NM_000982 // Homo sapiens ribosomal protein L21 (RPL21) mRNA. // refseq // 11 // --- /// NR_026911 // Homo sapiens ribosomal protein L21 pseudogene 28 (RPL21P28) non-coding RNA. // refseq // 10 // --- /// U14967 // Human ribosomal protein L21 mRNA complete cds. // gb // 10 // --- /// U25789 // Human ribosomal protein L21 mRNA complete cds. // gb // 11 // ---,AB209100 // gb // 8 // Cross Hyb Matching Probes /// D28406 // gb // 2 // Cross Hyb Matching Probes /// L25348 // gb // 2 // Cross Hyb Matching Probes /// GENSCAN00000000123 // ensembl // 3 // Cross Hyb Matching Probes /// GENSCAN00000001917 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000003401 // ensembl // 3 // Cross Hyb Matching Probes /// GENSCAN00000005879 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000006984 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000008116 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000009482 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000009978 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000010348 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000010548 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000014785 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000017471 // ensembl // 8 // Cross Hyb Matching Probes /// GENSCAN00000022327 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000022677 // e nsembl // 4 // Cross Hyb Matching Probes /// GENSCAN00000022767 // ensembl // 3 // Cross Hyb Matching Probes /// GENSCAN00000023762 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000024856 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000026363 // ensembl // 4 // Cross Hyb Matching Probes /// GENSCAN00000027635 // ensembl // 7 // Cross Hyb Matching Probes /// GENSCAN00000036108 // ensembl // 4 // Cross Hyb Matching Probes /// GENSCAN00000038219 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000048931 // ensembl // 3 // Cross Hyb Matching Probes /// ENST00000473558 // ensembl // 5 // Cross Hyb Matching Probes /// ENST00000466550 // ensembl // 7 // Cross Hyb Matching Probes /// ENST00000403842 // ensembl // 8 // Cross Hyb Matching Probes /// ENST00000491732 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000469924 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000497298 // ensembl // 4 // Cross Hyb Matching Probes /// ENST000005 68122 // ensembl // 5 // Cross Hyb Matching Probes /// ENST00000576404 // ensembl // 3 // Cross Hyb Matching Probes /// ENST00000437709 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000456484 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000485147 // ensembl // 7 // Cross Hyb Matching Probes /// ENST00000423231 // ensembl // 3 // Cross Hyb Matching Probes /// ENST00000398929 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000482905 // ensembl // 5 // Cross Hyb Matching Probes /// ENST00000493028 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000497954 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000441274 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000469899 // ensembl // 3 // Cross Hyb Matching Probes /// ENST00000485945 // ensembl // 5 // Cross Hyb Matching Probes /// ENST00000496249 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000399532 // ensembl // 7 // Cross Hyb Matching Probes /// ENST00000463605 // ensem bl // 6 // Cross Hyb Matching Probes /// ENST00000488408 // ensembl // 3 // Cross Hyb Matching Probes /// ENST00000406094 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000402666 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000416102 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000419877 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000494303 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000402896 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000426566 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000471411 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000480369 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000510061 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000488305 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000567196 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000488289 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000465295 // ensembl // 4 // Cro ss Hyb Matching Probes /// ENST00000467293 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000463506 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000472975 // ensembl // 3 // Cross Hyb Matching Probes /// ENST00000554662 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000422509 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000479116 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000556149 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000477341 // ensembl // 8 // Cross Hyb Matching Probes /// ENST00000439177 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000430569 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000493466 // ensembl // 5 // Cross Hyb Matching Probes /// ENST00000463521 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000471393 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000440049 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000404609 // ensembl // 2 // Cross Hyb Matchin g Probes /// ENST00000486904 // ensembl // 3 // Cross Hyb Matching Probes /// ENST00000395517 // ensembl // 5 // Cross Hyb Matching Probes /// ENST00000557463 // ensembl // 5 // Cross Hyb Matching Probes /// ENST00000465083 // ensembl // 5 // Cross Hyb Matching Probes /// ENST00000454107 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000456604 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000482506 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000491826 // ensembl // 3 // Cross Hyb Matching Probes /// ENST00000433345 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000418453 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000496412 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000461458 // ensembl // 7 // Cross Hyb Matching Probes /// ENST00000411449 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000483696 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000497178 // ensembl // 2 // Cross Hyb Matching Probes /// E NST00000479921 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000563948 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000433468 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000418441 // ensembl // 7 // Cross Hyb Matching Probes /// ENST00000397467 // ensembl // 3 // Cross Hyb Matching Probes /// ENST00000468416 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000428586 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000434678 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000415692 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000442539 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000439130 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000453468 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000422570 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000473808 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000524271 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000460608 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000327215 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000427200 // ensembl // 3 // Cross Hyb Matching Probes /// ENST00000417077 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000407436 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000402485 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000444831 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000454675 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000493462 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000472093 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000486753 // ensembl // 2 // Cross Hyb Matching Probes /// AY320407 // gb_htc // 8 // Cross Hyb Matching Probes /// NR_027153 // refseq // 3 // Cross Hyb Matching Probes +200013_at,g4506618,gb:NM_000986.1 /DEF=Homo sapiens ribosomal protein L24 (RPL24) mRNA. /FEA=mRNA /GEN=RPL24 /PROD=ribosomal protein L24 /DB_XREF=gi:4506618 /UG=Hs.184582 ribosomal protein L24 /FL=gb:BC000690.1 gb:M94314.1 gb:NM_000986.1,NM_000986,Hs.184582,Hs.477028,chr9:72832075-72832622 (+) // 95.14 // q21.12 /// chr3:101399935-101405559 (-) // 99.82 // q12.3,ribosomal protein L24,RPL24,chr3q12,full length,ENSG00000114391 /// ENSG00000181524,6152,C9JNW5 /// C9JXB8 /// P83731,---,604180,NP_000977,NM_000986,0000184 // nuclear-transcribed mRNA catabolic process nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotrans lational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral reproduction // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral infectious cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement,0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation,0003723 / / RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // traceable author statement,Ribosomal_Proteins // GenMAPP,IPR000988 // Ribosomal protein L24e-related // 1.4E-40 /// IPR000988 // Ribosomal protein L24e-related // 6.9E-41 /// IPR000988 // Ribosomal protein L24e-related // 1.2E-40,BC000690(11) BC070193(11) CR456729(10) ENST00000394077(11) ENST00000464595(11) ENST00000469605(11) ENST00000488288(10) ENST00000495401(11) M94314(11) NM_000986(11),BC000690 // Homo sapiens ribosomal protein L24 mRNA (cDNA clone MGC:2240 IMAGE:3349215) complete cds. // gb // 11 // --- /// BC070193 // Homo sapiens ribosomal protein L24 mRNA (cDNA clone MGC:88174 IMAGE:6733162) complete cds. // gb // 11 // --- /// CR456729 // Homo sapiens full open reading frame cDNA clone RZPDo834E0 36D for gene RPL24 ribosomal protein L24; complete cds incl. stopcodon. // gb // 10 // --- /// ENST00000326586 // cdna:pseudogene chromosome:GRCh37:6:42924083:42924503:-1 gene:ENSG00000181524 gene_biotype:pseudogene transcript_biotype:processed_pseudogene // ensembl // 11 // --- /// ENST00000394077 // cdna:known chromosome:GRCh37:3:101399936:101405626:-1 gene:ENSG00000114391 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000464595 // cdna:known chromosome:GRCh37:3:101399935:101405556:-1 gene:ENSG00000114391 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 11 // --- /// ENST00000469605 // cdna:putative chromosome:GRCh37:3:101400886:101405539:-1 gene:ENSG00000114391 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000488288 // cdna:known chromosome:GRCh37:3:101399967:101404733:-1 gene:ENSG00000114391 gene_biotype:protein_coding transcript_biotype:retain ed_intron // ensembl // 10 // --- /// ENST00000495401 // cdna:putative chromosome:GRCh37:3:101399940:101405549:-1 gene:ENSG00000114391 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000043783 // cdna:genscan chromosome:GRCh37:3:101370010:101405520:-1 transcript_biotype:protein_coding // ensembl // 9 // --- /// M94314 // Homo sapiens ribosomal protein L30 mRNA complete cds. // gb // 11 // --- /// NM_000986 // Homo sapiens ribosomal protein L24 (RPL24) mRNA. // refseq // 11 // ---,TCONS_l2_00019084-XLOC_l2_010061 // broad-tucp // 2 // Cross Hyb Matching Probes /// AK122630 // gb // 4 // Cross Hyb Matching Probes /// BX538309 // gb // 7 // Cross Hyb Matching Probes /// D28400 // gb // 2 // Cross Hyb Matching Probes /// GENSCAN00000031100 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000470961 // ensembl // 7 // Cross Hyb Matching Probes /// ENST00000421023 // ensembl // 4 // Cross Hyb Matching Probes /// ENST0000044 6071 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000399435 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000454858 // ensembl // 2 // Cross Hyb Matching Probes +200014_s_at,g4758543,gb:NM_004500.1 /DEF=Homo sapiens heterogeneous nuclear ribonucleoprotein C (C1C2) (HNRPC) mRNA. /FEA=mRNA /GEN=HNRPC /PROD=heterogeneous nuclear ribonucleoprotein C(C1C2) /DB_XREF=gi:4758543 /UG=Hs.182447 heterogeneous nuclear ribonucleoprotein C (C1C2) /FL=gb:BC003394.1 gb:M16342.1 gb:NM_004500.1,NM_004500,Hs.182447,Hs.508848,chr14:21678714-21737507 (-) // 98.86 // q11.2,heterogeneous nuclear ribonucleoprotein C (C1/C2) /// uncharacterized LOC100652761 /// uncharacterized LOC100653343,HNRNPC /// LOC100652761 /// LOC100653343,chr14q11.2,full length,ENSG00000092199,100652761 /// 100653343 /// 3183,A8K9A4 /// B2R5W2 /// B2R603 /// B3KX96 /// B4DMJ1 /// B4DQQ2 /// B4DSU6 /// B4DY08 /// G3V251 /// G3V2D6 /// G3V2H6 /// G3V2Q1 /// G3V3K6 /// G3V4C1 /// G3V4M8 /// G3V4W0 /// G3V555 /// G3V575 /// G3V576 /// G3V5V7 /// G3V5X6 /// G8JL89 /// P07910 /// Q569J8,---,164020,NP_001070910 /// NP_001070911 /// NP_004491 /// NP_112604,NM_001077442 /// NM_001077443 /// NM_004500 /// NM_031314 /// XR_132756 /// XR_133037,0000398 // nuclear mRNA splicing via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement,0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0045120 // pronucleus // inferred from electronic annotation /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay,0000166 // nucleotide binding // inferred from e lectronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction,mRNA_processing_Reactome // GenMAPP,IPR000504 // RNA recognition motif domain // 5.7E-17 /// IPR000504 // RNA recognition motif domain // 5.9E-17 /// IPR000504 // RNA recognition motif domain // 3.9E-17 /// IPR000504 // RNA recognition motif domain // 6.3E-17,AK126950(11) AK302213(11) BC003394(11) BC066932(11) BC092433(11) BC103758(11) M16342(11) ENST00000336053(11) ENST00000554969(11) ENST00000556142(11) ENST00000554455(11) ENST00000430246(11) ENST00000553753(11) ENST00000555914(11) ENST00000555309(11) ENST00000320084(11) ENST00000449098(11) EN ST00000400042(11) NM_031314(11) NM_004500(11) NM_001077442(11) NM_001077443(11),AK126950 // Homo sapiens cDNA FLJ45003 fis clone BRAWH3011623 highly similar to Heterogeneous nuclear ribonucleoproteins C. // gb // 11 // --- /// AK302213 // Homo sapiens cDNA FLJ53542 complete cds highly similar to Heterogeneous nuclear ribonucleoproteins C. // gb // 11 // --- /// BC003394 // Homo sapiens heterogeneous nuclear ribonucleoprotein C (C1/C2) mRNA (cDNA clone MGC:5418 IMAGE:3447724) complete cds. // gb // 11 // --- /// BC066932 // Homo sapiens heterogeneous nuclear ribonucleoprotein C (C1/C2) mRNA (cDNA clone MGC:87239 IMAGE:4375450) complete cds. // gb // 11 // --- /// BC092433 // Homo sapiens heterogeneous nuclear ribonucleoprotein C (C1/C2) mRNA (cDNA clone IMAGE:30374039) complete cds. // gb // 11 // --- /// BC103758 // Homo sapiens heterogeneous nuclear ribonucleoprotein C (C1/C2) mRNA (cDNA clone MGC:117353 IMAGE:6187512) complete cds. // gb // 11 // --- /// ENST000 00320084 // cdna:known chromosome:GRCh37:14:21677295:21737638:-1 gene:ENSG00000092199 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000336053 // cdna:putative chromosome:GRCh37:14:21677295:21737653:-1 gene:ENSG00000092199 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000400042 // cdna:known chromosome:GRCh37:14:21678727:21737586:-1 gene:ENSG00000092199 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000430246 // cdna:known chromosome:GRCh37:14:21678715:21733675:-1 gene:ENSG00000092199 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000449098 // cdna:known chromosome:GRCh37:14:21677295:21737638:-1 gene:ENSG00000092199 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000553753 // cdna:putative chromosome:GRCh37:14:21678741:21737562:-1 gen e:ENSG00000092199 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000554455 // cdna:known chromosome:GRCh37:14:21678709:21737584:-1 gene:ENSG00000092199 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000554969 // cdna:known chromosome:GRCh37:14:21678693:21737584:-1 gene:ENSG00000092199 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000555309 // cdna:novel chromosome:GRCh37:14:21678772:21737580:-1 gene:ENSG00000092199 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000555914 // cdna:novel chromosome:GRCh37:14:21678772:21737563:-1 gene:ENSG00000092199 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000556142 // cdna:putative chromosome:GRCh37:14:21678705:21737582:-1 gene:ENSG00000092199 gene_biotype:protein_coding transcript_biotype:protei n_coding // ensembl // 11 // --- /// M16342 // Human nuclear ribonucleoprotein particle (hnRNP) C protein mRNA complete cds. // gb // 11 // --- /// NM_001077442 // Homo sapiens heterogeneous nuclear ribonucleoprotein C (C1/C2) (HNRNPC) transcript variant 3 mRNA. // refseq // 11 // --- /// NM_001077443 // Homo sapiens heterogeneous nuclear ribonucleoprotein C (C1/C2) (HNRNPC) transcript variant 4 mRNA. // refseq // 11 // --- /// NM_004500 // Homo sapiens heterogeneous nuclear ribonucleoprotein C (C1/C2) (HNRNPC) transcript variant 2 mRNA. // refseq // 11 // --- /// NM_031314 // Homo sapiens heterogeneous nuclear ribonucleoprotein C (C1/C2) (HNRNPC) transcript variant 1 mRNA. // refseq // 11 // ---,--- +200015_s_at,g4758157,gb:NM_004404.1 /DEF=Homo sapiens neural precursor cell expressed developmentally down-regulated 5 (NEDD5) mRNA. /FEA=mRNA /GEN=NEDD5 /PROD=neural precursor cell expressed developmentallydown-regulated 5 /DB_XREF=gi:4758157 /UG=Hs.155595 neural precursor cell expressed developmentally down-regulated 5 /FL=gb:D28540.1 gb:NM_004404.1 gb:D63878.1,AI191427,Hs.155595,Hs.721234,chr2:242254784-242293439 (+) // 99.91 // q37.3,septin 2,2-Sep,chr2q37,full length,ENSG00000168385,4735,B5MCX3 /// Q15019,---,601506,NP_001008491 /// NP_001008492 /// NP_004395 /// NP_006146,NM_001008491 /// NM_001008492 /// NM_004404 /// NM_006155,0002036 // regulation of L-glutamate transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // inferred from sequence or structural similarity /// 0007224 // smoothened signali ng pathway // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0042384 // cilium assembly // inferred from sequence or structural similarity /// 0042384 // cilium assembly // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation,0000145 // exocyst // inferred from electronic annotation /// 0000775 // chromosome centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from dir ect assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from sequence or structural similarity /// 0005938 // cell cortex // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0042995 // cell projection // inferred from electron ic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0060170 // cilium membrane // inferred from sequence or structural similarity /// 0060170 // cilium membrane // inferred from electronic annotation,0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0030234 // enzyme regulator activity // inferred from electronic annotation /// 0032947 // protein complex scaffold // inferred from electronic annotation,---,IPR000038 // Cell division protein GTP binding // 1.1E-131 /// IPR000038 // Cell division protein GTP binding // 7.6E-128 /// IPR000038 // Cell division protein GTP binding // 1.5E-131,AF038404(11) D28540(11) ENST00000360051(11) ENST00000391971(11) ENST00000391972(11) ENST00000391973(11) ENST00000402092(11) ENST00000407971(11) NM_001008491(11) NM_001008492(11) NM_0044 04(11) NM_006155(11),AF038404 // Homo sapiens homolog of Nedd5 (hNedd5) mRNA complete cds. // gb // 11 // --- /// D28540 // Homo sapiens mRNA for Diff6 H5 CDC10 homologue complete cds. // gb // 11 // --- /// ENST00000360051 // cdna:known chromosome:GRCh37:2:242254704:242293439:1 gene:ENSG00000168385 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000391971 // cdna:known chromosome:GRCh37:2:242255276:242293442:1 gene:ENSG00000168385 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000391972 // cdna:known chromosome:GRCh37:2:242255883:242293439:1 gene:ENSG00000168385 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000391973 // cdna:known chromosome:GRCh37:2:242254515:242293439:1 gene:ENSG00000168385 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000402092 // cdna:known chromosome:GRCh 37:2:242255343:242293442:1 gene:ENSG00000168385 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000407971 // cdna:putative chromosome:GRCh37:2:242255298:242293442:1 gene:ENSG00000168385 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_001008491 // Homo sapiens septin 2 (SEPT2) transcript variant 1 mRNA. // refseq // 11 // --- /// NM_001008492 // Homo sapiens septin 2 (SEPT2) transcript variant 3 mRNA. // refseq // 11 // --- /// NM_004404 // Homo sapiens septin 2 (SEPT2) transcript variant 4 mRNA. // refseq // 11 // --- /// NM_006155 // Homo sapiens septin 2 (SEPT2) transcript variant 2 mRNA. // refseq // 11 // ---,--- +200016_x_at,g4504444,gb:NM_002136.1 /DEF=Homo sapiens heterogeneous nuclear ribonucleoprotein A1 (HNRPA1) mRNA. /FEA=mRNA /GEN=HNRPA1 /PROD=heterogeneous nuclear ribonucleoprotein A1 /DB_XREF=gi:4504444 /UG=Hs.249495 heterogeneous nuclear ribonucleoprotein A1 /FL=gb:NM_002136.1,NM_002136,Hs.249495,Hs.546261,chr12:54674487-54679030 (+) // 95.7 // q13.13 /// chr2:201927748-201929483 (+) // 86.72 // q33.1 /// chr18:29991468-29993200 (-) // 87.22 // q12.1 /// chr5:79654187-79655918 (-) // 85.59 // q14.1,heterogeneous nuclear ribonucleoprotein A1,HNRNPA1,chr12q13.1,full length,ENSG00000135486 /// ENSG00000215492,3178,B4DP35 /// B4E0B5 /// F8VRQ1 /// F8VSB5 /// F8VTQ5 /// F8VXY0 /// F8VYN5 /// F8VZ49 /// F8W1S7 /// F8W646 /// F8W6I7 /// H0YH80 /// P09651 /// Q0VAC0 /// Q3MI39 /// Q6IPF2 /// Q9BSM5,---,164017,NP_002127 /// NP_112420,NM_002136 /// NM_031157,0000380 // alternative nuclear mRNA splicing via spliceosome // inferred from electronic annotation /// 0000398 // nuclear m RNA splicing via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing via spliceosome // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006405 // RNA export from nucleus // inferred by curator /// 0006405 // RNA export from nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0044419 // interspecies interaction between organisms // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051168 // nuclear export // inferred from direct assay /// 0051170 // nuclear import // inferred from direct assay,0005634 // nucleus // inferred from direct assay /// 0 005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030530 // heterogeneous nuclear ribonucleoprotein complex // traceable author statement /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay,0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003697 // single-stranded DNA bindin g // inferred from direct assay /// 0003723 // RNA binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // inferred by curator,---,IPR000504 // RNA recognition motif domain // 9.2E-23 /// IPR000504 // RNA recognition motif domain // 1.1E-23 /// IPR000504 // RNA recognition motif domain // 8.4E-23 /// IPR000504 // RNA recognition motif domain // 1.0E-23 /// IPR000504 // RNA recognition motif domain // 8.5E-23 /// IPR000504 // RNA recognition motif domain // 5.9E-23 /// IPR000504 // RNA recognition motif domain // 7.0E-24 /// IPR000504 // RNA recognition motif domain // 9.6E-23 /// IPR000504 // RNA recognition motif domain // 1.2E-23 /// IPR000504 // RNA recognition motif domain // 6.7E-23 /// IPR000504 // RNA recognition motif domain // 7.9E-24 /// IPR021662 // Nuclear factor hnRNPA1 // 9.9E-19 /// IPR021662 // Nuclear factor hnRNPA1 // 9.2E-19 /// IPR021662 // Nuclear factor hnRNPA1 // 9.3E-19 /// IPR021662 // Nuclear factor hnRNPA1 // 1.0E-18 /// IPR021662 // Nuclear factor hnRNPA1 // 9.4E-19 /// IPR021662 // Nuclear factor hnRNPA1 // 5.2E-19,BC002355(11) BC009600(11) BC012158(11) BC033714(11) BC052296(11) BC074502(11) BC103707(11) ENST00000330752(11) ENST00000340913(11) ENST00000546500(11) ENST00000547276(11) ENST00000547617(11) ENST00000551133(11) ENST00000552494(11) ENST00000552591(11) NM_002136(11) NM_031157(11),BC002355 // Homo sapiens heterogeneous nuclear ribonucleoprotein A1 mRNA (cDNA clone MGC:8473 IMAGE:2821751) complete cds. // gb // 11 // --- /// BC009600 // Homo sapiens heterogeneous nuclear ribonucleoprotein A1 mRNA (cDNA clone MGC:14692 IMAGE:4134638) complete cds. // gb // 11 // --- /// BC012158 // Homo sapiens heterogeneous nuclear ribonucleoprotein A1 mRNA (cDNA clone MGC:20389 IMAGE:4564655) complete cds. // gb // 11 // --- /// BC033714 // Homo sapiens heterogeneous nuclear ribonucleoprotein A1 mRNA (cDNA clone MGC:45574 IMA GE:4420039) complete cds. // gb // 11 // --- /// BC052296 // Homo sapiens heterogeneous nuclear ribonucleoprotein A1 mRNA (cDNA clone MGC:59854 IMAGE:6297642) complete cds. // gb // 11 // --- /// BC074502 // Homo sapiens heterogeneous nuclear ribonucleoprotein A1 mRNA (cDNA clone MGC:65152 IMAGE:3455742) complete cds. // gb // 11 // --- /// BC103707 // Homo sapiens heterogeneous nuclear ribonucleoprotein A1 mRNA (cDNA clone MGC:102835 IMAGE:6154800) complete cds. // gb // 11 // --- /// ENST00000330752 // cdna:known chromosome:GRCh37:12:54674539:54679018:1 gene:ENSG00000135486 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000340913 // cdna:known chromosome:GRCh37:12:54674539:54678998:1 gene:ENSG00000135486 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000400448 // cdna:pseudogene chromosome:GRCh37:18:29991471:29993167:-1 gene:ENSG00000215492 gene_biotype:pseudogene trans cript_biotype:processed_pseudogene // ensembl // 10 // --- /// ENST00000546500 // cdna:known chromosome:GRCh37:12:54673977:54680871:1 gene:ENSG00000135486 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000547276 // cdna:known chromosome:GRCh37:12:54674564:54679035:1 gene:ENSG00000135486 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000547617 // cdna:novel chromosome:GRCh37:12:54674533:54678981:1 gene:ENSG00000135486 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000551133 // cdna:novel chromosome:GRCh37:12:54674559:54679015:1 gene:ENSG00000135486 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000552494 // cdna:putative chromosome:GRCh37:12:54674539:54678995:1 gene:ENSG00000135486 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST000005525 91 // cdna:putative chromosome:GRCh37:12:54674540:54678999:1 gene:ENSG00000135486 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_002136 // Homo sapiens heterogeneous nuclear ribonucleoprotein A1 (HNRNPA1) transcript variant 1 mRNA. // refseq // 11 // --- /// NM_031157 // Homo sapiens heterogeneous nuclear ribonucleoprotein A1 (HNRNPA1) transcript variant 2 mRNA. // refseq // 11 // ---,TCONS_l2_00009739-XLOC_l2_005225 // broad-tucp // 3 // Cross Hyb Matching Probes /// TCONS_00007807-XLOC_004032 // broad-lncrna // 2 // Cross Hyb Matching Probes /// AK126454 // gb // 3 // Cross Hyb Matching Probes /// AK298176 // gb // 7 // Cross Hyb Matching Probes /// BC061889 // gb // 2 // Cross Hyb Matching Probes /// BC071945 // gb // 7 // Cross Hyb Matching Probes /// BC073162 // gb // 7 // Cross Hyb Matching Probes /// BC108266 // gb // 3 // Cross Hyb Matching Probes /// BC121133 // gb // 3 // Cross Hyb Matching Probes /// ENST0000035749 5 // ensembl // 3 // Cross Hyb Matching Probes /// ENST00000342657 // ensembl // 3 // Cross Hyb Matching Probes /// ENST00000398039 // ensembl // 3 // Cross Hyb Matching Probes /// ENST00000420780 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000562726 // ensembl // 5 // Cross Hyb Matching Probes /// ENST00000504082 // ensembl // 2 // Cross Hyb Matching Probes /// BC045662 // gb_htc // 6 // Cross Hyb Matching Probes /// AK308679 // gb_htc // 3 // Cross Hyb Matching Probes /// NM_001011724 // refseq // 3 // Cross Hyb Matching Probes /// NM_001011725 // refseq // 3 // Cross Hyb Matching Probes /// NR_002944 // refseq // 5 // Cross Hyb Matching Probes +200017_at,g4506712,gb:NM_002954.1 /DEF=Homo sapiens ribosomal protein S27a (RPS27A) mRNA. /FEA=mRNA /GEN=RPS27A /PROD=ribosomal protein S27a /DB_XREF=gi:4506712 /UG=Hs.3297 ribosomal protein S27a /FL=gb:BC001392.1 gb:BC005328.1 gb:NM_002954.1,NM_002954,Hs.3297,Hs.311640,chr1:192685274-192685813 (+) // 93.89 // q31.2 /// chr2:55459823-55462744 (+) // 99.63 // p16.1 /// chr16:61089318-61089842 (-) // 95.37 // q21,ribosomal protein S27a,RPS27A,chr2p16,full length,ENSG00000143947 /// ENSG00000224631,6233,B2RDW1 /// P62979 /// Q49A90 /// Q5RKT7,---,191343,NP_001129064 /// NP_001170884 /// NP_002945,NM_001135592 /// NM_001177413 /// NM_002954,0000075 // cell cycle checkpoint // traceable author statement /// 0000080 // G1 phase of mitotic cell cycle // traceable author statement /// 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000084 // S phase of mitotic cell cycle // traceable author statement /// 0000184 // nuclear-transcribed mRNA catabo lic process nonsense-mediated decay // traceable author statement /// 0000187 // activation of MAPK activity // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000216 // M/G1 transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I TAP-dependent // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006412 // translation // inferre d by curator /// 0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006916 // anti-apoptosis // traceable author statement /// 0006977 // DNA damage response signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // traceable author statement /// 0007249 // I-kappaB kinase/NF-kappa B cascade // traceable author statement /// 0007254 // JNK cascade // traceable author statement /// 0008063 // Toll signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0008624 // induction of apoptosis by extracellular signals // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral reproduction // traceable author statement /// 0016044 // cellular membrane organization // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016197 // endosomal transport // traceable author statement /// 0019058 // viral infectious cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0031145 // anap hase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0034130 // toll-like receptor 1 signaling pathway // traceable author statement /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC c lass I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0046788 // egress of virus within host cell // traceable author statement /// 0048011 // nerve growth factor receptor signaling pathway // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein liga se activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement,0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0010008 // endosome membrane // traceable author statement /// 0015935 // small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // traceable author statement,0003735 // structural constituent of ribosome // inferred from direct assay /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation,---,IPR000626 // Ubiquitin // 1.1E-38 /// IPR000626 // Ubiquitin // 2.5E-39 /// IPR002906 // Ribosomal protein S27a // 7.5E-32 /// IPR022617 // Small ubiquitin-related modifier SUMO // 7.7E-24 /// IPR022617 // Small ubiquitin-related modifier SUMO // 1.8E-24,AK093614(9) AK225718(11) AY952889(10) BC001392(11) BC042362(11) BC053371(11) BC066293(11) ENST00000272317(11) ENST00000402285(11) ENST00000404735(11) ENST00000449323(9) ENST00000478196(9) ENST00000495843(11) NM_001135592(11) NM_001177413(11) NM_002954(11),AK093614 // Homo sapiens cDNA FLJ36295 fis clone THYMU2004152. // gb // 9 // --- /// AK225718 // Homo sapiens mRNA for bA92 K2.2 variant clone: TMS08221. // gb // 11 // --- /// AY952889 // Homo sapiens antigen MMSA-8 mRNA sequence. // gb // 10 // --- /// BC001392 // Homo sapiens ribosomal protein S27a mRNA (cDNA clone MGC:1629 IMAGE:3050927) complete cds. // gb // 11 // --- /// BC042362 // Homo sapiens ribosomal protein S27a mRNA (cDNA clone MGC:57125 IMAGE:4831143) complete cds. // gb // 11 // --- /// BC053371 // Homo sapiens ribosomal protein S27a mRNA (cDNA clone MGC:61435 IMAGE:5531043) complete cds. // gb // 11 // --- /// BC066293 // Homo sapiens ribosomal protein S27a mRNA (cDNA clone MGC:86974 IMAGE:30336950) complete cds. // gb // 11 // --- /// ENST00000272317 // cdna:known chromosome:GRCh37:2:55459538:55462989:1 gene:ENSG00000143947 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000402285 // cdna:known chromosome:GRCh37:2:55459039:55462724:1 gene:ENSG00000143947 gene_biotype:protein_coding transcript_biotype:protein_coding // ense mbl // 11 // --- /// ENST00000404735 // cdna:known chromosome:GRCh37:2:55459814:55462891:1 gene:ENSG00000143947 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000444907 // cdna:pseudogene chromosome:GRCh37:16:61089349:61089818:-1 gene:ENSG00000224631 gene_biotype:pseudogene transcript_biotype:pseudogene // ensembl // 9 // --- /// ENST00000449323 // cdna:known chromosome:GRCh37:2:55459568:55462095:1 gene:ENSG00000143947 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 9 // --- /// ENST00000478196 // cdna:known chromosome:GRCh37:2:55459825:55462320:1 gene:ENSG00000143947 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 9 // --- /// ENST00000492222 // cdna:pseudogene chromosome:GRCh37:16:61089349:61089818:-1 gene:ENSG00000224631 gene_biotype:pseudogene transcript_biotype:processed_pseudogene // ensembl // 9 // --- /// ENST00000495843 // cdna:known chromosome:GRCh37:2:55459931 :55462745:1 gene:ENSG00000143947 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 11 // --- /// GENSCAN00000035423 // cdna:genscan chromosome:GRCh37:2:55452767:55462713:1 transcript_biotype:protein_coding // ensembl // 9 // --- /// NM_001135592 // Homo sapiens ribosomal protein S27a (RPS27A) transcript variant 2 mRNA. // refseq // 11 // --- /// NM_001177413 // Homo sapiens ribosomal protein S27a (RPS27A) transcript variant 3 mRNA. // refseq // 11 // --- /// NM_002954 // Homo sapiens ribosomal protein S27a (RPS27A) transcript variant 1 mRNA. // refseq // 11 // ---,TCONS_l2_00000739-XLOC_l2_000553 // broad-tucp // 5 // Cross Hyb Matching Probes /// TCONS_l2_00001532-XLOC_l2_001118 // broad-tucp // 1 // Cross Hyb Matching Probes /// AK129972 // gb // 7 // Cross Hyb Matching Probes /// GENSCAN00000000381 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000001683 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000006016 // ense mbl // 2 // Cross Hyb Matching Probes /// GENSCAN00000006504 // ensembl // 7 // Cross Hyb Matching Probes /// GENSCAN00000010010 // ensembl // 8 // Cross Hyb Matching Probes /// GENSCAN00000038302 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000041701 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000471772 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000494756 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000468810 // ensembl // 8 // Cross Hyb Matching Probes /// ENST00000443181 // ensembl // 7 // Cross Hyb Matching Probes /// ENST00000497083 // ensembl // 7 // Cross Hyb Matching Probes /// ENST00000427962 // ensembl // 1 // Cross Hyb Matching Probes /// ENST00000402798 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000453803 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000429552 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000329806 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000463344 // ensemb l // 2 // Cross Hyb Matching Probes /// ENST00000475545 // ensembl // 4 // Cross Hyb Matching Probes /// hsa-mir-4426 // mirbase // 4 // Cross Hyb Matching Probes /// NR_039624 // refseq // 4 // Cross Hyb Matching Probes +200018_at,g4506684,gb:NM_001017.1 /DEF=Homo sapiens ribosomal protein S13 (RPS13) mRNA. /FEA=mRNA /GEN=RPS13 /PROD=ribosomal protein S13 /DB_XREF=gi:4506684 /UG=Hs.165590 ribosomal protein S13 /FL=gb:BC000475.1 gb:L01124.1 gb:NM_001017.1,NM_001017,Hs.165590,Hs.446588,chr1:53237826-53238346 (-) // 95.85 // p32.3 /// chr11:17095940-17099220 (-) // 99.43 // p15.1,uncharacterized LOC100508408 /// ribosomal protein S13 /// small nucleolar RNA C/D box 14B,LOC100508408 /// RPS13 /// SNORD14B,chr11p15,full length,ENSG00000110700,100508408 /// 6207 /// 85388,P62277,EC:3.6.5.3,180476,NP_001008,NM_001017 /// NR_001452 /// XR_111163,0000184 // nuclear-transcribed mRNA catabolic process nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // traceable author statement /// 00 06414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral reproduction // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral infectious cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0033119 // negative regulation of RNA splicing // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement,0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // non-traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation,0003729 // mRNA binding // inferred from direct assay /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction,Ribosomal_Proteins // GenMAPP /// Ribosomal_Proteins // GenMAPP,IPR000589 // Ribosomal protein S15 // 3.4E-12 /// IPR000589 // Ribosomal protein S15 // 1.7E-27 /// IPR012606 // Ribosomal protein S13/S15 N-terminal // 2.9E-33 /// IPR012606 // Ribosomal protein S13/S15 N-terminal // 3.0E-33,BC000475(11) BC006772(11) BC029732(11) BC066322(11) BC100032(11) L01124(11) ENST00000531008(9) ENST00000531908(9) ENST00000228140(10) ENST00000526895(11) ENST00000525634(11) E NST00000525828(11) NM_001017(11),BC000475 // Homo sapiens ribosomal protein S13 mRNA (cDNA clone MGC:8648 IMAGE:2961637) complete cds. // gb // 11 // --- /// BC006772 // Homo sapiens ribosomal protein S13 mRNA (cDNA clone MGC:5071 IMAGE:2899987) complete cds. // gb // 11 // --- /// BC029732 // Homo sapiens ribosomal protein S13 mRNA (cDNA clone MGC:21924 IMAGE:4388273) complete cds. // gb // 11 // --- /// BC066322 // Homo sapiens ribosomal protein S13 mRNA (cDNA clone MGC:87221 IMAGE:4816284) complete cds. // gb // 11 // --- /// BC100032 // Homo sapiens ribosomal protein S13 mRNA (cDNA clone MGC:111778 IMAGE:6025884) complete cds. // gb // 11 // --- /// ENST00000228140 // cdna:putative chromosome:GRCh37:11:17095936:17099213:-1 gene:ENSG00000110700 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// ENST00000525634 // cdna:known chromosome:GRCh37:11:17095936:17099334:-1 gene:ENSG00000110700 gene_biotype:protein_coding transcript _biotype:protein_coding // ensembl // 11 // --- /// ENST00000525828 // cdna:known chromosome:GRCh37:11:17095940:17099215:-1 gene:ENSG00000110700 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 11 // --- /// ENST00000526895 // cdna:known chromosome:GRCh37:11:17095936:17099253:-1 gene:ENSG00000110700 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 11 // --- /// ENST00000531008 // cdna:known chromosome:GRCh37:11:17095936:17097159:-1 gene:ENSG00000110700 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 9 // --- /// ENST00000531908 // cdna:known chromosome:GRCh37:11:17095936:17097567:-1 gene:ENSG00000110700 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 9 // --- /// L01124 // Human ribosomal protein S13 (RPS13) mRNA complete cds. // gb // 11 // --- /// NM_001017 // Homo sapiens ribosomal protein S13 (RPS13) mRNA. // refseq // 11 // ---,D00099 // gb // 2 // Cr oss Hyb Matching Probes /// GENSCAN00000014086 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000533969 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000527571 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000534329 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000528074 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000437890 // ensembl // 8 // Cross Hyb Matching Probes /// ENST00000486386 // ensembl // 2 // Cross Hyb Matching Probes +200019_s_at,g4503658,gb:NM_001997.1 /DEF=Homo sapiens Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 (FAU) mRNA. /FEA=mRNA /GEN=FAU /PROD=Finkel-Biskis-Reilly murine sarcoma virus(FBR-MuSV) ubiquitously expressed (fox derived); ribosomalprotein S30 /DB_XREF=gi:4503658 /UG=Hs.177415 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 /FL=gb:NM_001997.1,NM_001997,Hs.177415,Hs.387208,chr11:64888102-64889609 (-) // 97.88 // q13.1,Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed,FAU,chr11q13,full length,ENSG00000149806 /// ENSG00000235297,2197,E9PM49 /// E9PMS9 /// E9PR30 /// P35544 /// P62861,---,134690,NP_001988,NM_001997,0000184 // nuclear-transcribed mRNA catabolic process nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // inferred from ele ctronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral reproduction // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral infectious cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement,0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 000 5840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation,0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // inferred from direct assay /// 0003735 // structural constituent of ribosome // inferred from electronic annotation,Ribosomal_Proteins // GenMAPP /// Ribosomal_Proteins // GenMAPP /// Ribosomal_Proteins // GenMAPP,IPR000626 // Ubiquitin // 1.3E-18 /// IPR000626 // Ubiquitin // 3.7E-19 /// IPR000626 // Ubiquitin // 2.3E-19 /// IPR000626 // Ubiquitin // 7.4E-19 /// IPR006846 // Ribosomal protein S30 // 1.3E-34 /// IPR006846 // Ribosomal protein S30 // 3.0E-35 /// IPR006846 // Ribosomal protein S30 // 6.1E-21 /// IPR022617 // Small ubiquitin-related modifier SUMO // 3.4E-9 /// IPR022617 // Smal l ubiquitin-related modifier SUMO // 2.0E-9,BC033877(11) BC051834(11) CR541974(11) ENST00000279259(11) ENST00000434372(10) ENST00000525297(11) ENST00000526555(11) ENST00000527548(11) ENST00000529259(11) ENST00000529639(11) ENST00000531357(11) ENST00000531743(11) NM_001997(11),BC033877 // Homo sapiens Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed mRNA (cDNA clone MGC:45978 IMAGE:5758816) complete cds. // gb // 11 // --- /// BC051834 // Homo sapiens cDNA clone IMAGE:5212028 partial cds. // gb // 11 // --- /// CR541974 // Homo sapiens full open reading frame cDNA clone RZPDo834G1234D for gene FAU Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30; complete cds incl. stopcodon. // gb // 11 // --- /// ENST00000279259 // cdna:putative chromosome:GRCh37:11:64888110:64889625:-1 gene:ENSG00000149806 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000434372 // cdna:putative chromosome:GRCh37:11:64888755:64889649:-1 gene:ENSG00000149806 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// ENST00000474180 // cdna:pseudogene chromosome:GRCh37:18:72057119:72057532:-1 gene:ENSG00000235297 gene_biotype:pseudogene transcript_biotype:processed_pseudogene // ensembl // 10 // --- /// ENST00000525297 // cdna:novel chromosome:GRCh37:11:64888103:64889293:-1 gene:ENSG00000149806 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000526555 // cdna:known chromosome:GRCh37:11:64888229:64889585:-1 gene:ENSG00000149806 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000527548 // cdna:known chromosome:GRCh37:11:64888103:64889585:-1 gene:ENSG00000149806 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000529259 // cdna:putative chromosome:GRCh37:11:64888169: 64889387:-1 gene:ENSG00000149806 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000529639 // cdna:known chromosome:GRCh37:11:64888100:64889945:-1 gene:ENSG00000149806 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000531357 // cdna:known chromosome:GRCh37:11:64888106:64889589:-1 gene:ENSG00000149806 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 11 // --- /// ENST00000531743 // cdna:known chromosome:GRCh37:11:64888102:64889529:-1 gene:ENSG00000149806 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000021899 // cdna:genscan chromosome:GRCh37:18:72057119:72057631:-1 transcript_biotype:protein_coding // ensembl // 10 // --- /// GENSCAN00000023953 // cdna:genscan chromosome:GRCh37:11:64888153:64889285:-1 transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_001997 // Homo sapiens Finkel-Biski s-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (FAU) mRNA. // refseq // 11 // ---,X75315 // gb // 4 // Cross Hyb Matching Probes +200020_at,g6678270,gb:NM_007375.1 /DEF=Homo sapiens TAR DNA binding protein (TARDBP) mRNA. /FEA=mRNA /GEN=TARDBP /PROD=TAR DNA binding protein /DB_XREF=gi:6678270 /UG=Hs.193989 TAR DNA binding protein /FL=gb:AL050265.1 gb:NM_007375.1 gb:U23731.1,NM_007375,Hs.193989,Hs.300624,chr1:11072728-11084101 (+) // 99.02 // p36.22,TAR DNA binding protein,TARDBP,chr1p36.22,full length,ENSG00000120948,23435,B1AKP7 /// B4DJ45 /// B4DRW3 /// G3V162 /// Q13148 /// Q9H256,---,605078 /// 612069,NP_031401,NM_007375,0006351 // transcription DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription DNA-dependent // traceable author statement /// 0006355 // regulation of transcription DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotat ion /// 0008380 // RNA splicing // inferred from direct assay /// 0008380 // RNA splicing // inferred from electronic annotation /// 0043922 // negative regulation by host of viral transcription // inferred from direct assay /// 0070935 // 3'-UTR-mediated mRNA stabilization // inferred from direct assay,0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay,0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 000 3730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction,---,IPR000504 // RNA recognition motif domain // 4.5E-20 /// IPR000504 // RNA recognition motif domain // 2.0E-15 /// IPR000504 // RNA recognition motif domain // 2.6E-20 /// IPR000504 // RNA recognition motif domain // 1.2E-15,BC071657(11) BC095435(11) ENST00000240185(11) ENST00000315091(11) NM_007375(11),BC071657 // Homo sapiens TAR DNA binding protein mRNA (cDNA clone MGC:87845 IMAGE:5498250) complete cds. // gb // 11 // --- /// BC095435 // Homo sapiens TAR DNA binding protein mRNA (cDNA clone MGC:111119 IMAGE:30389805) complete cds. // gb // 11 // --- /// ENST00000240185 // cdna:known chromosome:GRCh37:1:11072699:11084100:1 gene:ENSG00000120948 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000315091 // cdna:known chromosome:GRCh37:1:11073773:11084240:1 gene:ENSG00000120948 gene_biotype:protein _coding transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_007375 // Homo sapiens TAR DNA binding protein (TARDBP) mRNA. // refseq // 11 // --- /// NR_026923 // Homo sapiens TAR DNA binding protein pseudogene (LOC643387) non-coding RNA. // refseq // 9 // ---,--- +200021_at,g5031634,gb:NM_005507.1 /DEF=Homo sapiens cofilin 1 (non-muscle) (CFL1) mRNA. /FEA=mRNA /GEN=CFL1 /PROD=cofilin 1 (non-muscle) /DB_XREF=gi:5031634 /UG=Hs.180370 cofilin 1 (non-muscle) /FL=gb:NM_005507.1,NM_005507,Hs.180370,Hs.170622,chr11:65622307-65625621 (-) // 98.96 // q13.1,cofilin 1 (non-muscle),CFL1,chr11q13,full length,ENSG00000172757,1072,B4E112 /// G3V1A4 /// P23528,---,601442,NP_005498,NM_005507,0002576 // platelet degranulation // traceable author statement /// 0006916 // anti-apoptosis // traceable author statement /// 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0007266 // Rho protein signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0009615 // response to virus // inferred from expression pattern /// 0022604 // regulation of cell morphogenesis // inferred from mutant phenotype /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0030168 // platelet activation // traceable author statement,0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0031258 // lamellipodium membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation,0003779 // actin binding // inferred from electronic annotation /// 0005515 // prot ein binding // inferred from physical interaction,G13_Signaling_Pathway // GenMAPP,IPR002108 // Actin-binding cofilin/tropomyosin type // 3.8E-44 /// IPR002108 // Actin-binding cofilin/tropomyosin type // 2.6E-44,AK097690(11) BC011005(11) BC012265(11) BC012318(11) BC018256(11) ENST00000308162(11) ENST00000524553(9) ENST00000525451(11) ENST00000527344(10) ENST00000530945(11) NM_005507(11),AK097690 // Homo sapiens cDNA FLJ40371 fis clone TESTI2034931 highly similar to Cofilin-1. // gb // 11 // --- /// AK123187 // Homo sapiens cDNA FLJ41193 fis clone BRACE2045300 highly similar to COFILIN NON-MUSCLE ISOFORM. // gb // 11 // --- /// AK303614 // Homo sapiens cDNA FLJ51435 complete cds moderately similar to Cofilin-1. // gb // 10 // --- /// BC011005 // Homo sapiens cofilin 1 (non-muscle) mRNA (cDNA clone MGC:16554 IMAGE:4079579) complete cds. // gb // 11 // --- /// BC012265 // Homo sapiens cofilin 1 (non-muscle) mRNA (cDNA clone MGC:9272 IMAGE:3862540) complete cds. // gb // 11 // --- /// BC012318 // Homo sapiens cofilin 1 (non-muscle) mRNA (cDNA clone MGC:15952 IMAGE:3538185) complete cds. // gb // 11 // --- /// BC018256 // Homo sapiens cofilin 1 (non-muscle) mRNA (cDNA clone MGC:17447 IMAGE:3448134) complete cds. // gb // 11 // --- /// ENST00000308162 // cdna:known chromosome:GRCh37:11:65622308:65625804:-1 gene:ENSG00000172757 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000524553 // cdna:putative chromosome:GRCh37:11:65622525:65624435:-1 gene:ENSG00000172757 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 9 // --- /// ENST00000525451 // cdna:known chromosome:GRCh37:11:65622272:65626886:-1 gene:ENSG00000172757 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000527344 // cdna:putative chromosome:GRCh37:11:65622446:65624504:-1 gene:ENSG00000172757 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// ENST00000530945 // cdna:known chromosome:GRCh37:11:65622303:65625665:-1 gene:ENSG00000172757 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 11 // --- /// NM_005507 // Homo sapiens cofilin 1 (non-muscle) (CFL1) mRNA. // refseq // 11 // ---,BT006846 // gb // 2 // Cross Hyb Matching Probes /// D00682 // gb // 2 // Cross Hyb Matching Probes /// GENSCAN00000036958 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000037253 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000531407 // ensembl // 7 // Cross Hyb Matching Probes /// ENST00000534769 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000531413 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000440986 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000576793 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000508046 // ensembl // 2 // Cross Hyb Matching Probes +200022_at,g4506606,gb:NM_000979.1 /DEF=Homo sapiens ribosomal protein L18 (RPL18) mRNA. /FEA=mRNA /GEN=RPL18 /PROD=ribosomal protein L18 /DB_XREF=gi:4506606 /UG=Hs.75458 ribosomal protein L18 /FL=gb:BC000374.1 gb:L11566.1 gb:NM_000979.1,NM_000979,Hs.75458,Hs.515517,chr19:49118588-49121135 (-) // 96.03 // q13.33,ribosomal protein L18,RPL18,chr19q13,full length,ENSG00000063177,6141,B4DDY5 /// E7EW92 /// F8VUA6 /// F8VWC5 /// F8VXR6 /// F8VYV2 /// G3V203 /// H0YHA7 /// Q07020,---,604179,NP_000970,NM_000979,0000184 // nuclear-transcribed mRNA catabolic process nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // tr aceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral reproduction // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral infectious cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement,0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // traceable a uthor statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation,0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // traceable author statement,Ribosomal_Proteins // GenMAPP,IPR021131 // Ribosomal protein L18e/L15P // 6.9E-31 /// IPR021131 // Ribosomal protein L18e/L15P // 7.2E-31 /// IPR021131 // Ribosomal protein L18e/L15P // 7.3E-21 /// IPR021131 // Ribosomal protein L18e/L15P // 3.4E-23 /// IPR021131 // Ribosomal protein L18e/L15P // 4.8E-22 /// IPR021131 // Ribosomal protein L18e/L15P // 4.5E-31 /// IPR021131 // Ribosomal protein L18e/L15P // 3.4E-19 /// IPR021131 // Ribosomal protein L18e/L15P // 6.0E-21,AK293386(10) BC000374(11) BC009708(11) BC021743(11) ENST00000084795(11) ENST00000450952(10) ENST00000546623(11) E NST00000547892(11) ENST00000547897(10) ENST00000549273(11) ENST00000549370(11) ENST00000549920(11) ENST00000550645(10) ENST00000550973(11) ENST00000551749(11) ENST00000552347(11) ENST00000552588(11) ENST00000552705(10) L11566(11) NM_000979(11),AK091257 // Homo sapiens cDNA FLJ33938 fis clone CTONG2017998. // gb // 11 // --- /// AK293386 // Homo sapiens cDNA FLJ59178 complete cds moderately similar to 60S ribosomal protein L18. // gb // 10 // --- /// BC000374 // Homo sapiens ribosomal protein L18 mRNA (cDNA clone MGC:8373 IMAGE:2820119) complete cds. // gb // 11 // --- /// BC009708 // Homo sapiens ribosomal protein L18 mRNA (cDNA clone MGC:9403 IMAGE:3878799) complete cds. // gb // 11 // --- /// BC021743 // Homo sapiens ribosomal protein L18 mRNA (cDNA clone MGC:33859 IMAGE:5261251) complete cds. // gb // 11 // --- /// BC051359 // Homo sapiens ribosomal protein L18 mRNA (cDNA clone IMAGE:6646239). // gb_htc // 11 // --- /// ENST00000084795 // cdna:putative chromosome :GRCh37:19:49118588:49121141:-1 gene:ENSG00000063177 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000450952 // cdna:known chromosome:GRCh37:19:49119871:49122433:-1 gene:ENSG00000063177 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// ENST00000546623 // cdna:novel chromosome:GRCh37:19:49118590:49121054:-1 gene:ENSG00000063177 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000547892 // cdna:known chromosome:GRCh37:19:49118589:49122432:-1 gene:ENSG00000063177 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 11 // --- /// ENST00000547897 // cdna:known chromosome:GRCh37:19:49118587:49122425:-1 gene:ENSG00000063177 gene_biotype:protein_coding transcript_biotype:processed_transcript // ensembl // 10 // --- /// ENST00000549273 // cdna:putative chromosome:GRCh37:19:49118623:49122434:-1 gene:ENSG00000063177 gene_biotyp e:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000549370 // cdna:known chromosome:GRCh37:19:49118593:49122433:-1 gene:ENSG00000063177 gene_biotype:protein_coding transcript_biotype:nonsense_mediated_decay // ensembl // 11 // --- /// ENST00000549920 // cdna:known chromosome:GRCh37:19:49118585:49122793:-1 gene:ENSG00000063177 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000550645 // cdna:novel chromosome:GRCh37:19:49118588:49122420:-1 gene:ENSG00000063177 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// ENST00000550973 // cdna:putative chromosome:GRCh37:19:49118650:49122384:-1 gene:ENSG00000063177 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000551749 // cdna:known chromosome:GRCh37:19:49118588:49122440:-1 gene:ENSG00000063177 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 11 // --- /// ENST00000552347 // cdna:known chromosome:GRCh37:19:49118585:49122420:-1 gene:ENSG00000063177 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 11 // --- /// ENST00000552588 // cdna:novel chromosome:GRCh37:19:49118588:49122438:-1 gene:ENSG00000063177 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000552705 // cdna:known chromosome:GRCh37:19:49119239:49122440:-1 gene:ENSG00000063177 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 10 // --- /// GENSCAN00000043061 // cdna:genscan chromosome:GRCh37:19:49106634:49122400:-1 transcript_biotype:protein_coding // ensembl // 11 // --- /// L11566 // Homo sapiens ribosomal protein L18 (RPL18) mRNA complete cds. // gb // 11 // --- /// NM_000979 // Homo sapiens ribosomal protein L18 (RPL18) mRNA. // refseq // 11 // ---,TCONS_l2_00004485-XLOC_l2_002290 // broad-tucp // 2 // Cross Hyb Matching Probes /// TCONS_l2_00010 291-XLOC_l2_005557 // broad-tucp // 4 // Cross Hyb Matching Probes /// TCONS_l2_00010290-XLOC_l2_005557 // broad-tucp // 4 // Cross Hyb Matching Probes /// GENSCAN00000025486 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000026072 // ensembl // 4 // Cross Hyb Matching Probes /// GENSCAN00000026446 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000028022 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000549533 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000552851 // ensembl // 7 // Cross Hyb Matching Probes /// ENST00000550671 // ensembl // 8 // Cross Hyb Matching Probes /// ENST00000486306 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000459875 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000422478 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000478088 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000454750 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000494933 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000466718 // ensembl // 4 // Cross Hyb Matching Probes +200023_s_at,g4503518,gb:NM_003754.1 /DEF=Homo sapiens eukaryotic translation initiation factor 3 subunit 5 (epsilon 47kD) (EIF3S5) mRNA. /FEA=mRNA /GEN=EIF3S5 /PROD=eukaryotic translation initiation factor 3 subunit 5 (epsilon 47kD) /DB_XREF=gi:4503518 /UG=Hs.7811 eukaryotic translation initiation factor 3 subunit 5 (epsilon 47kD) /FL=gb:BC000490.1 gb:U94855.1 gb:NM_003754.1,AI001896,Hs.7811,Hs.516023,chr11:8008893-8017711 (+) // 90.74 // p15.4 /// chr2:58478568-58479802 (+) // 89.68 // p16.1,eukaryotic translation initiation factor 3 subunit F,EIF3F,chr11p15.4,full length,ENSG00000175390 /// ENSG00000233426,8665,B3KSH1 /// B4DEW9 /// B4DMT5 /// E9PQV8 /// H0YDT6 /// O00303,EC:3.4.19.12,603914,NP_003745,NM_003754,0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // inferred from direct assay /// 00 06413 // translational initiation // traceable author statement /// 0006413 // translational initiation // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement,0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0005852 // eukaryotic translation initiation factor 3 complex // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from electronic annotation,0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0003743 // translation initiation factor activity // traceable autho r statement /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation,Translation_Factors // GenMAPP,IPR000555 // JAB1/Mov34/MPN/PAD-1 // 1.2E-28 /// IPR000555 // JAB1/Mov34/MPN/PAD-1 // 1.3E-28 /// IPR000555 // JAB1/Mov34/MPN/PAD-1 // 9.2E-29 /// IPR000555 // JAB1/Mov34/MPN/PAD-1 // 1.8E-11,AK027739(11) AK093511(11) AK095574(11) AK289637(11) AK291354(11) AK293826(11) AK297621(11) BC000490(11) BT006894(11) CR456959(11) ENST00000309828(11) ENST00000449102(11) ENST00000530219(11) ENST00000531329(11) ENST00000533626(11) ENST00000537635(11) ENST00000538607(11) NM_003754(11) U94855(11),AK027739 // Homo sapiens cDNA FLJ14833 fis clone OVARC1001171 moderately similar to Homo sapiens translation initiation factor 3 47 kDa subunit mRNA. // gb // 11 // --- /// AK093511 // Homo sapiens cDNA FLJ36192 fis clone TESTI2027450 highly similar to Eukaryotic translation initiation factor 3 subunit 5. // gb // 11 // --- /// AK095574 // Homo sapiens cDNA FLJ38255 fis clone FCBBF3001020 highly similar to EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 5. // gb // 11 // --- /// AK289637 // Homo sapiens cDNA FLJ75282 complete cds highly similar to Homo sapiens eukaryotic translation initiation factor 3 subunit 5 epsilon 47kDa (EIF3S5) mRNA. // gb // 11 // --- /// AK291354 // Homo sapiens cDNA FLJ78396 complete cds highly similar to Homo sapiens eukaryotic translation initiation factor 3 subunit 5 epsilon 47kDa (EIF3S5) mRNA. // gb // 11 // --- /// AK293826 // Homo sapiens cDNA FLJ52478 complete cds highly similar to Eukaryotic translation initiation factor 3 subunit 5. // gb // 11 // --- /// AK297621 // Homo sapiens cDN A FLJ52696 complete cds highly similar to Eukaryotic translation initiation factor 3 subunit 5. // gb // 11 // --- /// BC000490 // Homo sapiens eukaryotic translation initiation factor 3 subunit F mRNA (cDNA clone MGC:8365 IMAGE:2819946) complete cds. // gb // 11 // --- /// BT006894 // Homo sapiens eukaryotic translation initiation factor 3 subunit 5 epsilon 47kDa mRNA complete cds. // gb // 11 // --- /// CR456959 // Homo sapiens full open reading frame cDNA clone RZPDo834B0519D for gene EIF3S5 eukaryotic translation initiation factor 3 subunit 5 epsilon 47kDa; complete cds incl. stopcodon. // gb // 11 // --- /// ENST00000309828 // cdna:known chromosome:GRCh37:11:8008867:8017716:1 gene:ENSG00000175390 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000449102 // cdna:known chromosome:GRCh37:11:8008888:8017622:1 gene:ENSG00000175390 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- / // ENST00000530219 // cdna:known chromosome:GRCh37:11:8013674:8017716:1 gene:ENSG00000175390 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 11 // --- /// ENST00000531329 // cdna:known chromosome:GRCh37:11:8008884:8017622:1 gene:ENSG00000175390 gene_biotype:protein_coding transcript_biotype:nonsense_mediated_decay // ensembl // 11 // --- /// ENST00000533626 // cdna:known chromosome:GRCh37:11:7991798:8023409:1 gene:ENSG00000175390 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000537260 // cdna:known chromosome:GRCh37:2:58479021:58479703:1 gene:ENSG00000233426 gene_biotype:pseudogene transcript_biotype:retrotransposed // ensembl // 10 // --- /// ENST00000537635 // cdna:known chromosome:GRCh37:11:8008437:8017716:1 gene:ENSG00000175390 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000538607 // cdna:known chromosome:GRCh37:11:8008884:8018101:1 gene:ENSG 00000175390 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// GENSCAN00000034402 // cdna:genscan chromosome:GRCh37:11:8004722:8017569:1 transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_003754 // Homo sapiens eukaryotic translation initiation factor 3 subunit F (EIF3F) mRNA. // refseq // 11 // --- /// U94855 // Homo sapiens translation initiation factor 3 47 kDa subunit mRNA complete cds. // gb // 11 // ---,GENSCAN00000028126 // ensembl // 7 // Cross Hyb Matching Probes /// ENST00000528763 // ensembl // 5 // Cross Hyb Matching Probes /// ENST00000531572 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000537214 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000434851 // ensembl // 7 // Cross Hyb Matching Probes +200024_at,g4506728,gb:NM_001009.1 /DEF=Homo sapiens ribosomal protein S5 (RPS5) mRNA. /FEA=mRNA /GEN=RPS5 /PROD=ribosomal protein S5 /DB_XREF=gi:4506728 /UG=Hs.76194 ribosomal protein S5 /FL=gb:NM_001009.1 gb:U14970.1,NM_001009,Hs.76194,Hs.378103,chr19:58898670-58906170 (+) // 98.87 // q13.43,ribosomal protein S5,RPS5,chr19q13.4,full length,ENSG00000083845,6193,P46782 /// Q53G25 /// Q59EK8,---,603630,NP_001000,NM_001009,0000184 // nuclear-transcribed mRNA catabolic process nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // inferred from genetic interaction /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // traceable author statement /// 0006414 // translati onal elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006450 // regulation of translational fidelity // inferred from genetic interaction /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral reproduction // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral infectious cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement,0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribo somal subunit // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation,0003723 // RNA binding // non-traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0003735 // structural constituent of ribosome // inferred from direct assay /// 0003735 // structural constituent of ribosome // inferred from electronic annotation,Ribosomal_Proteins // GenMAPP,IPR023798 // Ribosomal protein S7 domain // 4.6E-45,AK223106(10) BC015405(10) BC018151(10) BC035830(10) ENST00000196551(10) NM_001009(10) U14970(11),AB209803 // Homo sapiens mRNA for ribosomal protein S5 variant protein. // gb // 10 // -- - /// AK223106 // Homo sapiens mRNA for ribosomal protein S5 variant clone: KAT05451. // gb // 10 // --- /// BC015405 // Homo sapiens ribosomal protein S5 mRNA (cDNA clone MGC:21949 IMAGE:4390892) complete cds. // gb // 10 // --- /// BC018151 // Homo sapiens ribosomal protein S5 mRNA (cDNA clone MGC:9774 IMAGE:3856663) complete cds. // gb // 10 // --- /// BC035830 // Homo sapiens ribosomal protein S5 mRNA (cDNA clone IMAGE:5581961). // gb_htc // 10 // --- /// ENST00000196551 // cdna:known chromosome:GRCh37:19:58898636:58906170:1 gene:ENSG00000083845 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// GENSCAN00000006260 // cdna:genscan chromosome:GRCh37:19:58897326:58929151:1 transcript_biotype:protein_coding // ensembl // 9 // --- /// NM_001009 // Homo sapiens ribosomal protein S5 (RPS5) mRNA. // refseq // 10 // --- /// U14970 // Human ribosomal protein S5 mRNA complete cds. // gb // 11 // ---,GENSCAN00000004132 // ensembl // 2 / / Cross Hyb Matching Probes /// GENSCAN00000008164 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000028182 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000042955 // ensembl // 7 // Cross Hyb Matching Probes /// GENSCAN00000048447 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000449334 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000570744 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000435100 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000414617 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000472088 // ensembl // 2 // Cross Hyb Matching Probes /// BC015589 // gb_htc // 10 // Negative Strand Matching Probes +200025_s_at,g4506622,gb:NM_000988.1 /DEF=Homo sapiens ribosomal protein L27 (RPL27) mRNA. /FEA=mRNA /GEN=RPL27 /PROD=ribosomal protein L27 /DB_XREF=gi:4506622 /UG=Hs.111611 ribosomal protein L27 /FL=gb:BC002588.1 gb:L05094.1 gb:L19527.1 gb:NM_000988.1,NM_000988,Hs.111611,Hs.514196,chr17:41150759-41154969 (+) // 94.54 // q21.31,ribosomal protein L27,RPL27,chr17q21,full length,ENSG00000131469,6155,B2R4D8 /// E4W6B6 /// P61353,EC:3.6.5.3,607526,NP_000979,NM_000988,0000184 // nuclear-transcribed mRNA catabolic process nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP -dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral reproduction // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral infectious cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement,0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030529 // ribonucleoprotein complex // i nferred from electronic annotation,0003735 // structural constituent of ribosome // non-traceable author statement /// 0003735 // structural constituent of ribosome // traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation,Ribosomal_Proteins // GenMAPP /// Ribosomal_Proteins // GenMAPP,IPR001141 // Ribosomal protein L27e // 2.3E-42 /// IPR005824 // KOW // 6.0E-10,AK124148(11) BC001700(11) BC002588(11) BC007273(11) BC010026(11) BC021886(11) BC098560(11) ENST00000253788(11) L05094(11) L19527(11) NM_000988(11),AK124148 // Homo sapiens cDNA FLJ42154 fis clone THYMU2003542 moderately similar to 60S RIBOSOMAL PROTEIN L27. // gb // 11 // --- /// BC001700 // Homo sapiens ribosomal protein L27 mRNA (cDNA clone MGC:2930 IMAGE:3050183) complete cds. // gb // 11 // --- /// BC002588 // Homo sapiens ribosomal protein L27 mRNA (cDNA clone MGC:1642 IMAGE:3161438) complete cds. // gb // 11 // --- /// BC007273 // Homo sapiens ribosomal protein L27 mRNA (cDNA clone MGC:15592 IMAGE:3161124) complete cds. // gb // 11 // --- /// BC010026 // Homo sapiens ribosomal protein L27 mRNA (cDNA clone MGC:19677 IMAGE:3354227) complete cds. // gb // 11 // --- /// BC021886 // Homo sapiens ribosomal protein L27 mRNA (cDNA clone IMAGE:3445930). // gb // 11 // --- /// BC098560 // Homo sapiens ribosomal protein L27 mRNA (cDNA clone MGC:111175 IMAGE:30415908) complete cds. // gb // 11 // --- /// ENST00000253788 // cdna:known chromosome:GRCh37:17:41150446:41154956:1 gene:ENSG00000131469 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// FJ655906 // Homo sapiens RPL27/NME2 fusion protein mRNA partial cds. // gb // 11 // --- /// GENSCAN00000019254 // cdna:genscan chromosome:GRCh37:17:41150768:41154937:1 transcript_biotype:protein_coding // ensembl // 11 // --- /// L05094 // Homo sapiens ribosomal protein L27 mRNA complete cds. // gb // 11 // --- /// L19527 // Homo sapiens ribosomal protein L27 (RPL27) mRNA complete cds. // gb // 11 // --- /// NM_000988 // Homo sapiens ribosomal protein L27 (RPL27) mRNA. // refseq // 11 // ---,GENSCAN00000017010 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000022672 // ensembl // 6 // Cross Hyb Matching Probes /// GENSCAN00000041302 // ensembl // 4 // Cross Hyb Matching Probes /// GENSCAN00000043712 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000441321 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000434035 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000480072 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000468034 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000427253 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000411843 // ensembl // 7 // Cross Hyb Matching Probes +200026_at,g4506636,gb:NM_000995.1 /DEF=Homo sapiens ribosomal protein L34 (RPL34) mRNA. /FEA=mRNA /GEN=RPL34 /PROD=ribosomal protein L34 /DB_XREF=gi:4506636 /UG=Hs.250895 ribosomal protein L34 /FL=gb:L38941.1 gb:BC001773.1 gb:NM_000995.1,NM_000995,Hs.250895,Hs.438227,chr4:109543104-109546385 (+) // 96.68 // q25,ribosomal protein L34,RPL34,chr4q25,full length,ENSG00000109475,6164,P49207 /// Q5MK14,---,---,NP_000986 /// NP_296374,NM_000995 /// NM_033625,0000184 // nuclear-transcribed mRNA catabolic process nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral reproduction // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral infectious cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement,0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation,0003723 // RNA bindin g // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // traceable author statement,Ribosomal_Proteins // GenMAPP,IPR008195 // Ribosomal protein L34Ae // 1.7E-41,AF147334(9) AY762981(9) BC001773(10) BC070208(10) BC106009(10) CR542232(10) CR542242(10) ENST00000394665(10) ENST00000394667(10) ENST00000394668(10) ENST00000502534(10) ENST00000504231(9) ENST00000506397(10) L38941(11) NM_000995(10) NM_033625(10),AF147334 // Homo sapiens full length insert cDNA clone YB24H02. // gb // 9 // --- /// AY762981 // Homo sapiens leukemia-associated protein mRNA partial cds. // gb_htc // 9 // --- /// BC001773 // Homo sapiens ribosomal protein L34 mRNA (cDNA clone MGC:1640 IMAGE:3355603) complete cds. // gb // 10 // --- /// BC070208 // Homo sapiens ribosomal protein L34 mRNA (cDNA clone MGC :88189 IMAGE:6724916) complete cds. // gb // 10 // --- /// BC106009 // Homo sapiens ribosomal protein L34 mRNA (cDNA clone MGC:111005 IMAGE:4390762) complete cds. // gb // 10 // --- /// CR542232 // Homo sapiens full open reading frame cDNA clone RZPDo834E0525D for gene RPL34 ribosomal protein L34; complete cds without stopcodon. // gb // 10 // --- /// CR542242 // Homo sapiens full open reading frame cDNA clone RZPDo834B0126D for gene RPL34 ribosomal protein L34; complete cds incl. stopcodon. // gb // 10 // --- /// ENST00000394665 // cdna:known chromosome:GRCh37:4:109541746:109546411:1 gene:ENSG00000109475 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// ENST00000394667 // cdna:known chromosome:GRCh37:4:109541722:109546411:1 gene:ENSG00000109475 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// ENST00000394668 // cdna:known chromosome:GRCh37:4:109541812:109551568:1 gene:ENSG00000109475 gen e_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// ENST00000502534 // cdna:known chromosome:GRCh37:4:109541725:109546710:1 gene:ENSG00000109475 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// ENST00000504231 // cdna:known chromosome:GRCh37:4:109543199:109546336:1 gene:ENSG00000109475 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 9 // --- /// ENST00000506397 // cdna:known chromosome:GRCh37:4:109541789:109546408:1 gene:ENSG00000109475 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 10 // --- /// GENSCAN00000034752 // cdna:genscan chromosome:GRCh37:4:109541505:109546368:1 transcript_biotype:protein_coding // ensembl // 10 // --- /// L38941 // Homo sapiens ribosomal protein L34 (RPL34) mRNA complete cds. // gb // 11 // --- /// NM_000995 // Homo sapiens ribosomal protein L34 (RPL34) transcript variant 1 mRNA. // refseq // 10 // --- /// NM_033 625 // Homo sapiens ribosomal protein L34 (RPL34) transcript variant 2 mRNA. // refseq // 10 // ---,AK055920 // gb // 6 // Cross Hyb Matching Probes /// GENSCAN00000029743 // ensembl // 2 // Cross Hyb Matching Probes /// GENSCAN00000042905 // ensembl // 4 // Cross Hyb Matching Probes /// GENSCAN00000045350 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000503574 // ensembl // 6 // Cross Hyb Matching Probes /// ENST00000432390 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000465389 // ensembl // 4 // Cross Hyb Matching Probes /// ENST00000486062 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000475295 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000419419 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000466433 // ensembl // 2 // Cross Hyb Matching Probes /// ENST00000421454 // ensembl // 2 // Cross Hyb Matching Probes +200027_at,g7262387,gb:NM_004539.2 /DEF=Homo sapiens asparaginyl-tRNA synthetase (NARS) mRNA. /FEA=mRNA /GEN=NARS /PROD=asparaginyl-tRNA synthetase /DB_XREF=gi:7262387 /UG=Hs.181311 asparaginyl-tRNA synthetase /FL=gb:BC001687.1 gb:D84273.1 gb:NM_004539.2,NM_004539,Hs.181311,Hs.465224,chr18:55267895-55289013 (-) // 99.37 // q21.31,asparaginyl-tRNA synthetase,NARS,chr18q21.31,full length,ENSG00000134440,4677,B4DF91 /// B4DG16 /// B4DGT6 /// B4DN60 /// F5H015 /// O43776,EC:6.1.1.22,108410,NP_004530,NM_004539,0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006421 // asparaginyl-tRNA aminoacylation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement,0005625 // soluble fraction // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement,0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004816 // asparagine-tRNA ligase activity // inferred from electronic annotation /// 0004816 // asparagine-tRNA ligase activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation,---,IPR004364 // Aminoacyl-tRNA synthetase class II (D/K/N) // 2.0E-80 /// IPR004365 // Nucleic acid binding OB-fold tRNA/helicase-type // 4.5E-14,BC001687(11) D84273(11) ENST00000256854(11) NM_004539(11),BC001687 // Homo sapiens asparaginyl- tRNA synthetase mRNA (cDNA clone MGC:855 IMAGE:2987840) complete cds. // gb // 11 // --- /// D84273 // Homo sapiens mRNA for Asparaginyl tRNA Synthetase complete cds. // gb // 11 // --- /// ENST00000256854 // cdna:known chromosome:GRCh37:18:55267896:55289177:-1 gene:ENSG00000134440 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// NM_004539 // Homo sapiens asparaginyl-tRNA synthetase (NARS) mRNA. // refseq // 11 // ---,--- +200028_s_at,g9910251,gb:NM_020151.1 /DEF=Homo sapiens GTT1 protein (GTT1) mRNA. /FEA=mRNA /GEN=GTT1 /PROD=GTT1 protein /DB_XREF=gi:9910251 /UG=Hs.283722 GTT1 protein /FL=gb:AF270647.1 gb:NM_020151.1,NM_020151,Hs.283722,Hs.469331,chr2:96850604-96874508 (-) // 95.78 // q11.2,StAR-related lipid transfer (START) domain containing 7,STARD7,chr2q11.2,full length,ENSG00000084090,56910,A8K575 /// B3KNN8 /// C9JTD3 /// Q9NQZ5,---,---,NP_064536,NM_020151 /// NM_139267,---,0005739 // mitochondrion // inferred from electronic annotation,---,---,IPR002913 // Lipid-binding START // 1.4E-19,AF270647(11) AK094925(11) BC007894(11) BC008894(11) BC009998(11) BC012774(11) BC012793(11) BC013279(11) BC014076(11) BC014274(11) BC032106(11) ENST00000337288(11) ENST00000479456(11) NM_020151(11),AF270647 // Homo sapiens GTT1 mRNA complete cds. // gb // 11 // --- /// AK094925 // Homo sapiens cDNA FLJ37606 fis clone BRCOC2010730 moderately similar to Homo sapiens GTT1 mRNA. // gb // 11 // --- /// BC 007894 // Homo sapiens StAR-related lipid transfer (START) domain containing 7 mRNA (cDNA clone MGC:14282 IMAGE:4134933) complete cds. // gb // 11 // --- /// BC008894 // Homo sapiens StAR-related lipid transfer (START) domain containing 7 mRNA (cDNA clone MGC:10703 IMAGE:3833465) complete cds. // gb // 11 // --- /// BC009998 // Homo sapiens StAR-related lipid transfer (START) domain containing 7 mRNA (cDNA clone MGC:15094 IMAGE:4128869) complete cds. // gb // 11 // --- /// BC012774 // Homo sapiens StAR-related lipid transfer (START) domain containing 7 mRNA (cDNA clone MGC:16334 IMAGE:3842611) complete cds. // gb // 11 // --- /// BC012793 // Homo sapiens StAR-related lipid transfer (START) domain containing 7 mRNA (cDNA clone MGC:16560 IMAGE:4080200) complete cds. // gb // 11 // --- /// BC013279 // Homo sapiens StAR-related lipid transfer (START) domain containing 7 mRNA (cDNA clone MGC:16266 IMAGE:3830320) complete cds. // gb // 11 // --- /// BC014076 // Homo sa piens StAR-related lipid transfer (START) domain containing 7 mRNA (cDNA clone MGC:20300 IMAGE:4127007) complete cds. // gb // 11 // --- /// BC014274 // Homo sapiens StAR-related lipid transfer (START) domain containing 7 mRNA (cDNA clone MGC:10691 IMAGE:3677198) complete cds. // gb // 11 // --- /// BC032106 // Homo sapiens StAR-related lipid transfer (START) domain containing 7 mRNA (cDNA clone MGC:23321 IMAGE:4643387) complete cds. // gb // 11 // --- /// ENST00000337288 // cdna:known chromosome:GRCh37:2:96850597:96874556:-1 gene:ENSG00000084090 gene_biotype:protein_coding transcript_biotype:protein_coding // ensembl // 11 // --- /// ENST00000479456 // cdna:known chromosome:GRCh37:2:96850605:96853855:-1 gene:ENSG00000084090 gene_biotype:protein_coding transcript_biotype:retained_intron // ensembl // 11 // --- /// NM_020151 // Homo sapiens StAR-related lipid transfer (START) domain containing 7 (STARD7) mRNA. // refseq // 11 // ---,--- Added: SwiftApps/swift-galaxy/swift/lungsearch/egsearch.swift =================================================================== --- SwiftApps/swift-galaxy/swift/lungsearch/egsearch.swift (rev 0) +++ SwiftApps/swift-galaxy/swift/lungsearch/egsearch.swift 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,31 @@ +type file; + +app (file searchOut, file out) esearch (file wrapper, file pyscript, int numSlices, int sliceNumber, file inp1, file inp2) { + bash @wrapper @pyscript numSlices sliceNumber @searchOut stdout=@out; +} + +app (file joinOut) join ( string dir, file segment[]) { + join dir @joinOut 2 ; +} + +main() +{ + string outDir = @arg("dir","./out"); + int numSlices = @toInt(@arg("numSlices","100000")); + int firstSlice = @toInt(@arg("firstSlice","0")); + int lastSlice = @toInt(@arg("lastSlice","1")); + file dict <"./HG-U133A_2.na33.annot.csv">; + file results <"./Consortium_expr_full_pheno_no_affx.csv">; + file pyscript <"./exsearch.py">; + file wrapper <"./wrapper.sh">; + file segments[]; + + foreach s, i in [firstSlice:lastSlice] { + file f; + file o; + (f,o) = esearch(wrapper, pyscript, numSlices, s, dict, results); + segments[i] = f; + } +} + +main(); Added: SwiftApps/swift-galaxy/swift/lungsearch/exsearch.py =================================================================== --- SwiftApps/swift-galaxy/swift/lungsearch/exsearch.py (rev 0) +++ SwiftApps/swift-galaxy/swift/lungsearch/exsearch.py 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,401 @@ +#! /usr/bin/env python +''' +Sam Volchenboum + +Loads in CSV with data in rows. +First row are headers. +data file is +Rows zero to are phenotype information. + designates whether or not to perform a T-test on the data and rank the features. +If is not False, then it should be a number. This is the number of top/bottom rows to take from the sorted list (i.e. most positive and most negative) +If is False, then all data will be used, unranked. This will take a long, long time. + are the numbers of features to group together. +For instance, if the features are [a,b,c,d,e] and is [1,2] then the groups will be [a,b,c,d,e,ab,ac,ad,ae,bc,bd,be,cd,ce,de] and so forth. +If is True, then output will include the classifiers that are highest ranked as well as the raw data for each to be copied and pasted into a graphing program +If = True, will write all points for classification rate better than +If = False, will write nothing for classification rate less than + = annotation file from Affymetrix + +Usage notes: python exsearch.py 100 10 aout -Scott 05/30/2013 skrieder at iit.edu +''' +import warnings +warnings.filterwarnings("ignore", category=RuntimeWarning) +import time +#import pylab as pl +import numpy as np +import os + +#from sklearn.linear_model import LogisticRegression +from sklearn.svm import SVC +#from sklearn import datasets +from sklearn.preprocessing import scale +#from itertools import izip +from itertools import combinations, islice +from scipy.stats import tmean, ttest_ind +#from numpy import std +#from random import randint +from math import factorial, ceil +from operator import itemgetter, attrgetter +import sys + +# DD = [[1,22000],[4,22000],[3,22000],[2,22000]] +# #DD = [[5,20]] +# for D in DD: +# Y = D[0] +# X = D[1] * 2 +# total = factorial((X)) / (factorial(X - Y) * factorial(Y) ) +# print X,Y,total +# +# exit() + +def write_file(output_file, filename, directory='.', add_cr = True): + '''Writes output_file to filename''' + newfile = open(filename, "w") + for a in output_file: + if (add_cr == True): + newfile.write(a+"\n") + else: + newfile.write(a) + return + +def readfile(name_of_file, directory=".", cr = 1): + print "Loading "+name_of_file+"..." + # + # print "NAME",name_of_file, type(name_of_file) + # print "DIR",directory, type(directory) + # + file_data = open(directory+"/"+name_of_file) + file_contents = file_data.readlines() + output = [] + for i,line in enumerate(file_contents): + if (i <> len(file_contents)-1): # no CR on last line, apparently + output.append(line[:(-1* cr)]) # strip carriage returns + else: + output.append(line) + return output + +def load_data(filename,f,r): #r = starting row for the data + D = readfile(results_filename,f) + D = [a.replace('\r','').split(',') for a in D] + D = D[0:r] + [[a[0]] + [float(b) for b in a[1:]] for a in D[r:]] + return D + +def ranktest(D,training_labels,r): + # set up comparison test for the two groups + # assumes two groups are [0,1] + for line in D[r:]: # row one is sample names, row two is classes + S1 = [float(line[x+1]) for x,a in enumerate(training_labels) if a == 0] + S2 = [float(line[x+1]) for x,a in enumerate(training_labels) if a == 1] + T = ttest_ind(S1,S2) + line.append(T[0]) + + D[r:] = sorted(D[r:], key=itemgetter(-1), reverse=True) # sort by value of T-test positive to negative + D = D[:r] + D[r:r+rank] + D[-1 * rank:] # rank is a number. keep the top and bottom "rank" number of samples + D[r:] = sorted(D[r:], key = lambda x: abs(x[-1]), reverse=True) # sorts by absolute value of T-test + D = D[:r] + [a[1] + [a[0]+1] for a in enumerate(D[r:])] # numbers each one at end + D[r:] = sorted(D[r:], key=itemgetter(-2), reverse=True) # sorts again by relative value of t-test + return D + +def test_combos(d,training_labels,r): + # going to test each line in D against every other + D = d[r:] + max_class = 50.0 # starting baseline for classification + output = [] + print "There are",len(D),"features." + if print_to_screen: + for line in d[0][1:]: + print line + print + print + for line in training_labels: + print line + print + print + + FOX = ['202580_x_at', 8.92, 7.59, 6.72, 6.18, 7.11, 8.4, 7.87, 6.87, 6.34, 6.17, 6.52, 6.84, 7.01, 7.54, 6.4, 6.88, 7.14, 7.04, 6.68, 6.95, 6.9, 6.76, 6.35, 7.65, 6.55, 8.21, 6.68, 7.25, 7.07, 6.65, 8.15, 6.62, 9.21, 6.8, 7.68, 6.9, 6.66, 6.32, 7.54, 6.17, 6.5, 8.24, 7.56, 7.18, 8.24, 6.67, 6.83, 7.69, 7.93, 7.29, 6.44, 6.44, 7.15, 7.51, 6.08, 6.41, 5.69, 7.14, 7.54, 7.55, 6.96, 6.43, 6.15, 8.68, 7.36, 8.88, 7.04, 6.21, 2.2983938427111705, 794] + + for combo in combos_to_test: + print + print "Taking",combo,"at a time." + groups = combinations(D,combo) + # + # number of groups will be + # + # n! + # ---------- + # (n-r)! r! + # + # n = number of features + # r = number chosen + # assumes orer not important and no repetition allowed + # http://www.mathsisfun.com/combinatorics/combinations-permutations-calculator.html + # + # + + + + + + total = factorial((len(D))) / (factorial(len(D) - combo) * factorial(combo) ) + print "Total combinations\t",total + print "Taking at a time\t",combo + + numSlices = int(sys.argv[1]) + sliceNumber = int(sys.argv[2]) + outFileName = sys.argv[3] + + iterPerGroup = int(ceil(float(total)/float(numSlices))) + firstIter = sliceNumber * iterPerGroup + + print "Number of slices\t", numSlices + print "Slice number\t\t",sliceNumber + print "Iterations per group\t", iterPerGroup + print "First iteration\t\t", firstIter + print "Last iteration\t\t", firstIter+iterPerGroup + print "outFileName\t\t", outFileName + print + + slices = [ islice(groups,firstIter,firstIter+iterPerGroup) ] + for slice_number,S in enumerate(slices): # FIXME: eiminate this loop + output = [] + counter = 0 + for group in groups: + #group = [a for a in group] + [FOX] # for adding FOXM1 + + # for line in group: + # print line + # print len(line) + # print + # exit() + + if counter%10000 == 0: print counter + counter += 1 + + if rank: + sym = [a[0]+" , "+lib[a[0]][7]+" , "+lib[a[0]][8]+" , "+str(a[-1]) for a in group] + lines = [[float(a) for a in b[1:-2]] for b in group] # remove the t-test and rank + + # print sym + # for line in lines: + # print line + # print len(line) + # print + # exit() + # + + else: + sym = [a[0]+" , "+lib[a[0]][7]+" , "+lib[a[0]][8] for a in group] + lines = [[float(a) for a in b[1:]] for b in group] + training_data = zip(*lines) + X = np.array(training_data) + X = scale(X) + Y = np.array(training_labels) + + n_features = X.shape[1] + C = 1.0 + name = 'Linear SVC' + clf = SVC(kernel='linear', C=C, probability=True) + clf.fit(X, Y) + y_pred = clf.predict(X) + classif_rate = np.mean(y_pred.ravel() == Y.ravel()) * 100 + + # if classif_rate > 80 and '202580_x_at' in [a.split(',')[0].replace(' ','') for a in sym]: + # print classif_rate, sym + + if classif_rate > 89: + print classif_rate, sym + + # print sym + # if 'ARNTL2' in sym: + # print sym, classif_rate + + if print_to_screen and classif_rate > max_class: # keep track of the best combo so far... + points = [[a[n] for a in X] for n in range(combo)] + print sym,classif_rate + if print_to_screen == "points": + for P in points: + for p in P: + print p + print + print "-------------------------------------------------" + max_class = classif_rate + if classif_rate >= save_rank: # save all the data. If you want all data for everything, make save_data = True, and save_rank = 0 + points = [[a[n] for a in X] for n in range(combo)] # the raw data to save later + #print points + #exit() + output.append([sym,classif_rate,points]) + elif classif_rate < save_rank and save_data: # + output.append([sym,classif_rate]) # if save_data = False or 0, only save the features and rate - but not the data + elif save_data == False: + continue + output.sort(lambda x,y:cmp(y[1],x[1])) + #print "SUB",subname + #print "TYPE",type(working_folder),type(timestampe),type(subname) + # newfilename = working_folder + "/" + timestamp + "/" + outFileName + newfilename = outFileName + # print "NNAME",newfilename + # exit() + write_output(output,newfilename) + return output + +def write_output(output, filename): + #combos_to_test = [3] + d = ',' + + + if rank: + leader = ['Probe','Name','Symbol','Rank'] + else: + leader = ['Probe','Name','Symbol'] + + newout = [data_files, metrics, description] + [','.join(leader * max(combos_to_test)) + d + 'Classification' + d + (d.join(samples) + ", ,") * max(combos_to_test)] + [ d * (len(leader) * max(combos_to_test)) + "," + (d.join([str(a) for a in training_labels]) + ", ,") * max(combos_to_test)] + + for line in output: + #print ','.join([','.join([str(c) for c in b]) + ',' for b in line[2]]) + #exit() + if len(line) == 3: + newline = ','.join([a for a in line[0]]) + d * len(leader) * (max(combos_to_test) - len(line[0])) + d + str(line[1]) + d + ','.join([','.join([str(c) for c in b]) + ',' for b in line[2]]) + else: + newline = ','.join([a for a in line[0]]) + d * len(leader) * (max(combos_to_test) - len(line[0])) + d + str(line[1]) + newout.append(newline) + + write_file(newout, filename, add_cr = True) + return + +def get_library(library,r): + # creates dictionary of probes and symbols + ''' + 0 Probe Set ID + 1 Transcript ID(Array Design) + 2 Target Description + 3 Representative Public ID + 4 Archival UniGene Cluster + 5 UniGene ID + 6 Alignments + 7 Gene Title + 8 Gene Symbol + 9 Chromosomal Location + 10 Unigene Cluster Type + 11 Ensembl + 12 Entrez Gene + 13 SwissProt + 14 EC + 15 OMIM + 16 RefSeq Protein ID + 17 RefSeq Transcript ID + 18 Gene Ontology Biological Process + 19 Gene Ontology Cellular Component + 20 Gene Ontology Molecular Function + 21 Pathway + 22 InterPro + 23 Annotation Transcript Cluster + 24 Transcript Assignments + 25 Annotation Notes + ''' + + lib = readfile(library, r) + lib = [line.split(',') for line in lib] + lib_d = {} + for line in lib: + lib_d[line[0]] = line + return lib_d + + +print_to_screen = False # True, False, "points" +save_data = False # save all data, including data points, for classif_rate greater than save_rank below. If false, will record all data for above save rank and nothing for less than save rank. +save_rank = 85.0 # cut-off for saving data. If 100, and save_data = True, will save only classification rate for everything. If 0.0 and True above, will write full data for every line +# for example, save_data = True, save_rank = 80.0, will save all data for above 80% and only classitification rate for less than 80% +# for example, save_data = False, save_rank = 80, will save all data for above 80% and nothing for less than 80% +# if save_data = True, and save_rank = 100.0, will save rate only for everything. If rank = 0, will save all points for everything +rank = 10 # can either be false or a number, in which case it is the number of top and bottom features to keep after t-test. False means no t-test, use all features +combos_to_test = [2] # numbers of features to test. e,g, 1,2 means test all single gene and then all two gene combos +data_row_start = 14 # data starts at this row +#feature,feature_index,values = "Death",4,[0,1] + + +library_name = 'HG-U133A_2.na33.annot.csv' +working_folder = "./" +lib = get_library(library_name,working_folder) # dictionary of probes and symbols +timestamp = str(int(time.time())) +if not os.path.isdir(working_folder + "/" + timestamp): + os.mkdir(working_folder + "/" + timestamp) # create output directory +#results_filename = 'Lung_Cancer_Sample_Data.csv' +results_filename = 'Consortium_expr_full_pheno_no_affx.csv' +data = load_data(results_filename,working_folder,data_row_start) +''' +0 UniqueID +1 histology +2 had_adjuvant_chemo (TRUE/FALSE) +3 recurrence +4 TimetoRecurrence +5 death +6 overall_survival_months +7 age +8 gender +9 stage.title +10 dataset.id +11 had_adjuvant_RT +12 FirstProgressionOrRelapse +13 TimetoFirstProgression +''' + + +# Here is the data selection section +# clunky but works +# choose elements from list above +# metrics hard coded +data_files = "Data source = " + library_name + ", library = " + library_name +metrics = "Save rank = " + str(save_rank) + ", save_data = " + str(save_data) + ", rank = " + str(rank) + ", combos_to_test = " + str(combos_to_test) +L = 24.0 +H = 48.0 +description = "Adjuvant chemotherapy, <" + str(L) + " months vs. > " + str(H) + " months" +data_using = [[line[0]] + [a[1] for a in enumerate(line[1:]) if (data[2][a[0]+1] == 'FALSE' and data[6][a[0]+1] <> "NA") and (float(data[6][a[0]+1]) < L or float(data[6][a[0]+1]) > H)] for line in data] +training_labels = [0 if float(a) < L else 1 for a in data_using[6][1:]] +samples = [a for a in data_using[0][1:]] +#print samples +categories = [len([a for a in training_labels if a == 0]),len([a for a in training_labels if a == 1])] +description = description + "_" + str(categories[0]) + "_" + str(categories[1]) + "_" + "Top " + str(rank) + +if print_to_screen: + print description + +if rank: + data = ranktest(data_using,training_labels,data_row_start) +else: + data = data_using + +# combos_to_test = [1,2,3,4,5] +# D = data +# for combo in combos_to_test: +# total = factorial((len(D))) / (factorial(len(D) - combo) * factorial(combo) ) +# print combo,total +# exit() + +# <24 vs >48 = 794 +# <12 vs >24 = 10591 +# <12 vs >48 = 6998 +# <12 vs >60 = 8242 +# <6 vs >60 2108 +# <24 >24 1777 +# 24 36 1205 +# 12 36 8629 +#24 30 1900 + + +# test = '202580_x_at' +# for line in data: +# if line[0] == test: +# print line +# print +# exit() + + +# for i,line in enumerate(data): +# print i,line +# exit() +output = test_combos(data, training_labels,data_row_start) +#write_output(output) + +#exit() + + Property changes on: SwiftApps/swift-galaxy/swift/lungsearch/exsearch.py ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/lungsearch/lungsearch.xml =================================================================== --- SwiftApps/swift-galaxy/swift/lungsearch/lungsearch.xml (rev 0) +++ SwiftApps/swift-galaxy/swift/lungsearch/lungsearch.xml 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,19 @@ + + Swift - Power Grid Inference for Stochastic Optimization + + swift-lungsearch $site $lastslice $log_file + + + + + + + + + + + + + + + Added: SwiftApps/swift-galaxy/swift/lungsearch/midway.cdm =================================================================== --- SwiftApps/swift-galaxy/swift/lungsearch/midway.cdm (rev 0) +++ SwiftApps/swift-galaxy/swift/lungsearch/midway.cdm 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1 @@ +rule .*csv DIRECT /scratch/midway/maheshwari/swiftwork Added: SwiftApps/swift-galaxy/swift/lungsearch/midway.cf =================================================================== --- SwiftApps/swift-galaxy/swift/lungsearch/midway.cf (rev 0) +++ SwiftApps/swift-galaxy/swift/lungsearch/midway.cf 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,8 @@ +use.provider.staging=true +use.wrapper.staging=false +wrapperlog.always.transfer=true +execution.retries=0 +lazy.errors=false +provider.staging.pin.swiftfiles=false +sitedir.keep=true +tcp.port.range=50000,51000 Added: SwiftApps/swift-galaxy/swift/lungsearch/midway.xml =================================================================== --- SwiftApps/swift-galaxy/swift/lungsearch/midway.xml (rev 0) +++ SwiftApps/swift-galaxy/swift/lungsearch/midway.xml 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,46 @@ + + + + + + /scratch/local/swift + + + + + 12 + 12 + 10 + 1 + 1 + sandyb + 4.00 + 10000 + 100 + 100 + 28800 + 00:20:00 + + /scratch/midway/maheshwari/swiftwork + + + + + 12 + 12 + 10 + 1 + 1 + westmere + 4.00 + 10000 + 100 + 100 + 28800 + 00:20:00 + + /scratch/midway/maheshwari/swiftwork + + + + Added: SwiftApps/swift-galaxy/swift/lungsearch/swift-lungsearch =================================================================== --- SwiftApps/swift-galaxy/swift/lungsearch/swift-lungsearch (rev 0) +++ SwiftApps/swift-galaxy/swift/lungsearch/swift-lungsearch 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,280 @@ +#!/bin/bash + +site=$1 +lastslice=$2 +logfile=$3 + +echo $@>>/tmp/tmp.txt +#swift=/home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/swift +swift=/home/maheshwari/swift-0.94/cog/modules/swift/dist/swift-svn/bin/swift + +# use here docs for configs +cat << 'EOF' > /tmp/lungsearchgalaxy.swift +type file; + +app (file searchOut, file out) esearch (file wrapper, file pyscript, int numSlices, int sliceNumber, file inp1, file inp2) { + bash @wrapper @pyscript numSlices sliceNumber @searchOut stdout=@out; +} + +app (file joinOut) join ( string dir, file segment[]) { + join dir @joinOut 2 ; +} + +main() { + string outDir = @arg("dir","./out"); + int numSlices = @toInt(@arg("numSlices","100000")); + int firstSlice = @toInt(@arg("firstSlice","0")); + int lastSlice = @toInt(@arg("lastSlice","1")); + file dict <"./HG-U133A_2.na33.annot.csv">; + file results <"./Consortium_expr_full_pheno_no_affx.csv">; + file pyscript <"/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/lungsearch/exsearch.py">; + file wrapper <"/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/lungsearch/wrapper.sh">; + file segments[]; + + foreach s, i in [firstSlice:lastSlice] { + file f; + file o; + (f,o) = esearch(wrapper, pyscript, numSlices, s, dict, results); + segments[i] = f; + } +} + +main(); +EOF + +case "$site" in +midway ) +cat << 'EOF' > /tmp/sites.xml + + + + + + /scratch/local/swift + + + + + 12 + 12 + 10 + 1 + 1 + sandyb + 4.00 + 10000 + 100 + 100 + 28800 + 00:20:00 + + /scratch/midway/maheshwari/swiftwork + + + + + 12 + 12 + 10 + 1 + 1 + westmere + 4.00 + 10000 + 100 + 100 + 28800 + 00:20:00 + + /scratch/midway/maheshwari/swiftwork + + + +EOF + +cat << 'EOF' > /tmp/tc +uc3 bash /bin/bash null null null +cluster bash /bin/bash null null null +sandyb bash /bin/bash null null null +westmere bash /bin/bash null null null +beagle bash /bin/bash null null null +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +use.wrapper.staging=false +wrapperlog.always.transfer=true +execution.retries=0 +lazy.errors=false +provider.staging.pin.swiftfiles=false +sitedir.keep=true +tcp.port.range=50000,51000 +EOF + +cat << 'EOF' > /tmp/cdm +rule .*csv DIRECT /scratch/midway/maheshwari/swiftwork +EOF +;; + +uc3 ) +cat << 'EOF' > /tmp/sites.xml + + + + + .09 + 1000 + 1 + 3600 + 1 + 100 + 100 + 1 + UidDomain == "osg-gk.mwt2.org" + 1 + "group_friends.{env.USER}" + nonshared + + + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +uc3 echo /bin/echo +uc3 cat /bin/cat +uc3 runampl run_ampl.py +uc3 runampl_l run_ampl_l.py +uc3 runampl_u run_ampl_u.py +uc3 bash /bin/bash +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +stampede ) +cat << 'EOF' > /tmp/sites.xml + + + + + + + 16 + 16 + TG-STA110005S + normal + ketancmaheshwari at gmail.com + ALL + 02:00:00 + 8000 + 100 + 100 + 1 + 1 + 1 + .15 + 10000 + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +stampede echo echo +stampede cat cat +stampede runampl run_ampl.py +stampede runampl_l run_ampl_l.py +stampede runampl_u run_ampl_u.py +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +localhost ) +cat << 'EOF' > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.2 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +localhost bash /bin/bash +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=0 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +use.wrapper.staging=false +EOF +;; + +* ) +echo "defaulting to localhost" +cat << 'EOF' > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +localhost bash /bin/bash +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=0 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; +esac + +$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf -cdm.file /tmp/cdm /tmp/lungsearchgalaxy.swift -lastSlice=$lastslice 2> std.err +#$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/inference4galaxy.swift -batch=$batch -stochmodel=stochmodel.run -edrevised=edrevised.mod -asciidata=set_data_ascii.inc -printres=print_results_revised.inc -illinois=Illinois.tgz -wind_data=wind_data.dat 2> std.err + +EXITCODE=$? + +if [ "$EXITCODE" -ne "0" ]; then + cat std.err >&2 +fi +cp std.err $logfile +rm std.err +exit $EXITCODE Property changes on: SwiftApps/swift-galaxy/swift/lungsearch/swift-lungsearch ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/lungsearch/tc.data =================================================================== --- SwiftApps/swift-galaxy/swift/lungsearch/tc.data (rev 0) +++ SwiftApps/swift-galaxy/swift/lungsearch/tc.data 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,5 @@ +uc3 bash /bin/bash null null null +cluster bash /bin/bash null null null +sandyb bash /bin/bash null null null +westmere bash /bin/bash null null null +beagle bash /bin/bash null null null Added: SwiftApps/swift-galaxy/swift/lungsearch/wrapper.sh =================================================================== --- SwiftApps/swift-galaxy/swift/lungsearch/wrapper.sh (rev 0) +++ SwiftApps/swift-galaxy/swift/lungsearch/wrapper.sh 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,49 @@ +#!/bin/bash + +set -x + +echo $HOSTNAME + +if [ `echo $HOSTNAME | grep "uc3"` ] +then +# UC3 Specific setup + echo "On UC3" + export PYTHONPATH=/cvmfs/uc3.uchicago.edu/groups/swift/lib/python2.7 + export LD_LIBRARY_PATH=/cvmfs/uc3.uchicago.edu/groups/swift/lib:/cvmfs/uc3.uchicago.edu/groups/swift/lib64/atlas:/cvmfs/uc3.uchicago.edu/groups/swift/lib64 + export PATH=/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin:/cvmfs/uc3.uchicago.edu/groups/swift/bin/ + export PATH=/cvmfs/uc3.uchicago.edu/groups/swift/bin/:$PATH + ls -lah /mnt/hadoop/{env.USER}/* + ls -lah /mnt/hadoop/$USER/* +#End UC3 +elif [ `echo $HOSTNAME | grep "beagle"` ] +then +# Beagle specific setup + echo "On Beagle" + export PYTHONPATH=/soft/python/2.7/2.7.3-vanilla/modules/scikit-learn/0.14/lib/python2.7/site-packages:/soft/python/2.7/2.7.3-vanilla/modules/scipy/0.12.0/lib/python2.7/site-packages:/soft/python/2.7/2.7.3-vanilla/modules/numpy/1.7.0/lib/python2.7/site-packages:/soft/python/2.7/2.7.3-vanilla/modules/scikit-learn/0.14/lib/python2.7/site-packages:/soft/python/2.7/2.7.3-vanilla/modules/scipy/0.12.0/lib/python2.7/site-packages:/soft/python/2.7/2.7.3-vanilla/modules/numpy/1.7.0/lib/python2.7/site-packages:/soft/python/2.7/2.7.3-vanilla/modules + export LD_LIBRARY_PATH=/soft/python/2.7/2.7.3-vanilla/python/lib:/opt/gcc/mpc/0.8.1/lib:/opt/gcc/mpfr/2.4.2/lib:/opt/gcc/gmp/4.3.2/lib:/opt/gcc/4.7.2/snos/lib64:/soft/torque/2.5.7/lib:/soft/ci/lib + export PATH=/soft/python/2.7/2.7.3-vanilla/python/bin:/soft/python/2.7/2.7.3-vanilla/virtualenvs/ober/bin:$PATH + #End Beagle +elif [ `echo $HOSTNAME | grep "midway"` ] +then +# Midway specific setup + echo "On Midway : $HOSTNAME" + module load python; + # This is accessible to other users + export PYTHONPATH=/home/yadunand/scratch-midway/scikit-learn + export PYTHONPATH=$PYTHONPATH:/home/yadunand/python/scikit-learn +# End Midway +fi + +# Python ENV tests +# which python; +# python -c "import sklearn"; +# python -c "from sklearn.svm import SVC" + +# Platform independant script +echo "Checking for the input files "; +ls -lah; +echo "Python script to execute : $1" +echo "Executing.... python $1 $2 $3 $4" +python $1 $2 $3 $4 + +# Platform independent script ends \ No newline at end of file Property changes on: SwiftApps/swift-galaxy/swift/lungsearch/wrapper.sh ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/mysim.xml =================================================================== --- SwiftApps/swift-galaxy/swift/mysim.xml (rev 0) +++ SwiftApps/swift-galaxy/swift/mysim.xml 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,24 @@ + + A Swift tool to run the mysim workflow + + + swift-mysim "$site" "$nsim" "$steps" "$range" "$vals" "$html_file.files_path" "$log_file" "$html_file" + + + + + + + + + + + + + + + + + + + Added: SwiftApps/swift-galaxy/swift/plotswiftlogs =================================================================== --- SwiftApps/swift-galaxy/swift/plotswiftlogs (rev 0) +++ SwiftApps/swift-galaxy/swift/plotswiftlogs 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,97 @@ +#!/bin/bash + +#usage: ./extract4plots + +SWIFTLOGFILE=$1 + +TMPDIR=`mktemp -d plotlog.XXX` + +grep -i ProgressTicker $SWIFTLOGFILE > $TMPDIR/swiftoutfile.out + +SWIFTOUTFILE=$TMPDIR/swiftoutfile.out + +#extract start time +TMPDATE=`grep -i progress $SWIFTOUTFILE | head -n 1 | cut -f1-2 -d ' '` +START_TIME=`date +%s -d "$TMPDATE"` + +#extract end time +TMPDATE=`grep -i progress $SWIFTOUTFILE | tail -n 1 | cut -f1-2 -d ' '` +END_TIME=`date +%s -d "$TMPDATE"` + +#duration +DIFFTIME=$((END_TIME - START_TIME)) + +#extract active runs in a file +grep -o -i "Active:[0-9]*" $SWIFTOUTFILE | awk -F: '{print $2}' > $TMPDIR/active.txt + +#extract successful completions in a file +grep -o -i "Successfully:[0-9]*" $SWIFTOUTFILE | awk -F: '{print $2}' > $TMPDIR/cumulative.txt + +#prepare tics +activelines=`wc -l $TMPDIR/active.txt | awk '{print $1}'` +cumulines=`wc -l $TMPDIR/cumulative.txt | awk '{print $1}'` + +activelinespertic=`echo "scale=5 ; $DIFFTIME / $activelines" | bc` +seq 0 $activelinespertic $DIFFTIME > $TMPDIR/activetics.txt + +cumulinespertic=`echo "scale=5 ; $DIFFTIME / $cumulines" | bc` +seq 0 $cumulinespertic $DIFFTIME > $TMPDIR/cumultics.txt + +#final plot data +paste $TMPDIR/activetics.txt $TMPDIR/active.txt > $TMPDIR/plot_active.txt +paste $TMPDIR/cumultics.txt $TMPDIR/cumulative.txt > $TMPDIR/plot_cumulative.txt + +cat << EOF > $TMPDIR/plotit.gp +set terminal png enhanced +#set term postscript eps enhanced +#set terminal svg enhanced size 1000 1000 +#set style line 1 linecolor rgb "blue" +set output "activeplot.png" +set nokey +set xlabel "Time in sec" +set ylabel "number of active jobs" +set title "Active jobs" +#set xrange [110000:160000] +plot "plot_active.txt" using 1:2 with line + +set output "cumulativeplot.png" +#set xlabel "Time in seconds" +set ylabel "number of completed jobs" +set title "Cumulative jobs" +plot "plot_cumulative.txt" using 1:2 with lines + +#set output "cumulativeplot-openmp.png" +#set xlabel "Time in seconds" +#set ylabel "number of completed jobs" +#set title "Cumulative jobs" +#plot "plot_cumulative.txt" using 1:($2*24) with lines + +#set output "scs_loss.png" +#set title "SciColSim evolution loss Results" +#set xlabel "Evolution" +#set ylabel "Value of loss(AR)" +#plot "anneal.data" using 1 with lines + +#set output "multiloss.png" +#set title "SciColSim evolution loss Results" +#set key auto +#set yrange [0:200] +#set xlabel "Evolution" +#set ylabel "loss" +#plot "multiloss.txt" using 3 with lines title "multiloss mean val", "multiloss.txt" using ($3+$4) with lines title "+stddev", "multiloss.txt" using ($3-$4) with lines title "-stddev" +EOF + +cd $TMPDIR + +gnuplot plotit.gp +cp *.png ../ + +cd .. + +#scicolsim specific +#grep "T =" $SWIFTOUTFILE | awk '{print $6}' | cut -c8- | sed 's/....$//' > T.data + +#grep multi_annealing $SWIFTOUTFILE | grep "1;30" | awk '{print $3}' | cut -c11- | sed 's/....$//' > anneal.data + +#grep returning $SWIFTOUTFILE | awk '{print $3, $4, $5, $6}' | sed -e 's/'ci='//' -e 's/'cj='//' -e 's/'r.loss='//' -e 's/'r.sdev='//' | sort -t' ' -k 1,2n > multiloss.txt + Property changes on: SwiftApps/swift-galaxy/swift/plotswiftlogs ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/powergrid.xml =================================================================== --- SwiftApps/swift-galaxy/swift/powergrid.xml (rev 0) +++ SwiftApps/swift-galaxy/swift/powergrid.xml 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,32 @@ + + Swift - Power Grid Inference for Stochastic Optimization + + + swift-powergrid $site $batch $log_file + + + + + + + + + + + + + + + + + + + + Added: SwiftApps/swift-galaxy/swift/print_results_revised.inc =================================================================== --- SwiftApps/swift-galaxy/swift/print_results_revised.inc (rev 0) +++ SwiftApps/swift-galaxy/swift/print_results_revised.inc 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,13 @@ +# print results for analysis +# V. M. Zavala - MCS/ANL 2010 + +for{s in SCEN}{ +printf{t in 1..TH}: "%e ", pricehis[s,t] > Results/lmp_results.dat; +printf "\n " > Results/lmp_results.dat; +} +close Results/lmp_results.dat; + +# print results for inference app + printf: "%e ", cost > stoch_model_obj.out; close stoch_model_obj.out; +printf{t in TESTTIME,j in GEN}: "%e ", yuc[t,j] > stoch_model_x.out; +printf{j in GEN}: "%e ", Pgen_initial[j] > stoch_model_x.out; close stoch_model_x.out; Property changes on: SwiftApps/swift-galaxy/swift/print_results_revised.inc ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/set_data_ascii.inc =================================================================== --- SwiftApps/swift-galaxy/swift/set_data_ascii.inc (rev 0) +++ SwiftApps/swift-galaxy/swift/set_data_ascii.inc 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,65 @@ +# set ampl model data +# V. M. Zavala - MCS/ANL 2012 + +# read line data +table Lines_data IN "./Illinois/Lines_data.tab": +LIN <- [LIN], status, snd_bus, rec_bus, X, V, Pmax, install_cost; +read table Lines_data; + +# read bus data +table bus_data IN "./Illinois/bus_data.tab": +BUS <- [BUS], lat_bus, lon_bus; +read table bus_data; + +# read generator data +table Gen_data IN "./Illinois/Gen_data.tab": +GEN <- [GEN], bus_gen, np_cap, sum_cap, win_cap, min_cap, fuel, min_hrate, + min_power, max_ur, max_dr, lat_gen, lon_gen; +read table Gen_data; + +# dispatch horizon data +read TH < "./Illinois/dispatch_data.dat"; +read T < "./Illinois/dispatch_data.dat"; +close "./Illinois/dispatch_data.dat"; + +# python interface +read NS < "stoch_model_par.in"; +read fix_x < "stoch_model_par.in"; +close "stoch_model_par.in"; + +# read fuel data +table fuel_data IN "./Illinois/fuel_data.tab": +FUEL <- [FUEL], Description, HV, Unitprice, Units; +read table fuel_data; + +# read load data +table time_load IN "./Illinois/time_load.tab": TIME <- [TIME]; +read table time_load; + +table load_load IN "./Illinois/load_load.tab": LOAD <- [LOAD], bus_load; +read table load_load; + +#table testtime_load IN "./Illinois/testtime_load.tab": TESTTIME <- [TESTTIME]; +#read table testtime_load; + +read{i in TIME,j in LOAD} loads[i,j] < "./Illinois/Loads.dat"; +close Illinois/Loads.dat; + +# initialize initial conditions for generators +let{i in GEN} Pgen_init[i] := 0; + +# compute generation costs ($/MW) +let{i in GEN} gen_cost[i] := 1e-3*(min_hrate[i]/HV[fuel[i]])*Unitprice[fuel[i]]; + +# -------------- wind information +table wind_data IN "./Illinois/wind_data.tab": +WIND <- [WIND], bus_wind, wind_share; +read table wind_data; + +# from inference app +read{s in SCEN, t in TIME} wind_total[s,t] < "stoch_model_w.in"; +close stoch_model_w.in; + +# initialize wind info for moving horizon +let{s in SCEN,t in TESTTIME} wind_totalmh[s,t]:= wind_total[s,t+1]; + Property changes on: SwiftApps/swift-galaxy/swift/set_data_ascii.inc ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/sites.xml =================================================================== --- SwiftApps/swift-galaxy/swift/sites.xml (rev 0) +++ SwiftApps/swift-galaxy/swift/sites.xml 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,139 @@ + + + + + + + + + /tmp/swift.workdir + 0 + + + + + + + + + + + + + + + + + + + + + Added: SwiftApps/swift-galaxy/swift/statswift.xml =================================================================== --- SwiftApps/swift-galaxy/swift/statswift.xml (rev 0) +++ SwiftApps/swift-galaxy/swift/statswift.xml 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,47 @@ + + A Swift tool to run stats on compute nodes + + + swift-stats "$site.site_select" "$n" "$html_file.files_path" "$log_file" "$html_file" "$site.walltime" "$site.slots" "$site.queue" "$site.nodes" "$site.throttle" "$site.workdir" + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Added: SwiftApps/swift-galaxy/swift/stochmodel.run =================================================================== --- SwiftApps/swift-galaxy/swift/stochmodel.run (rev 0) +++ SwiftApps/swift-galaxy/swift/stochmodel.run 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,69 @@ +# ampl driver file for unit commitment +# V. M. Zavala - MCS/ANL 2012 + +reset; model edrevised.mod; +option presolve 0; +option solver cbc; +#option solver "/homes/ketan/cbc-2.2/2.2/bin/cbc"; + +# set model data +include set_data_ascii.inc; + +# assign reference bus +let ref_bus := 22671; + +# initialize variables +let{s in SCEN,t in TESTTIME, j in GEN} Pgen[s,t,j]:= np_cap[j]/2; +let{t in TESTTIME, j in GEN} yuc[t,j]:= 1; +let{s in SCEN,t in TESTTIME} slackp[s,t]:= 0; +let{s in SCEN,t in TESTTIME} slackm[s,t]:= 0; + +# fix first-stage variables if requested (for inference app) +if (fix_x == 1) then{ +read{t in TESTTIME,j in GEN} yuc[t,j] < stoch_model_x.in; +read{j in GEN} Pgen_initial[j] < stoch_model_x.in; + +close stoch_model_x.in; + +fix{t in TESTTIME,j in GEN} yuc[t,j]; + fix{j in GEN} Pgen_initial[j]; +} + +# data collection +param pricehis{s in SCEN,t in 0..TH}; +param costhisf{t in 0..TH}; +param costhiss{s in SCEN,t in 0..TH}; +param genhis{s in SCEN,t in 0..TH, j in GEN}; +param Phis{s in SCEN,t in 0..TH, j in LIN}; + +# start closed_loop +let idx_data := 24*90; +let idx_state := 0; + +for{idx_cl in 1..TH/T}{ + +# assign data for current horizon +let{s in SCEN,t in TESTTIME} wind_totalmh[s,t]:= wind_total[s,t+idx_data]; +fix{s in SCEN,t in TESTTIME, j in LOAD} Pload[s,t,j]:= loads[t+idx_data,j]; + +# compare total wind production to load +display wind_totalmh; + +# call solver +solve; + +# collect results over simulation horizon +let{s in SCEN,t in TESTTIME} pricehis[s,idx_state+t] := pfeq.dual[s,t]; +let{t in TESTTIME} costhisf[idx_state+t] := tot_start_cost[t]; +let{s in SCEN,t in TESTTIME} costhiss[s,idx_state+t] := tot_gen_cost[s,t]; +let{s in SCEN,t in TESTTIME,j in GEN} genhis[s,idx_state+t,j] := Pgen[s,t,j]; + +# shift horizon and set new initial conditions +let idx_data := idx_data + T; +let idx_state := idx_state + T; + +} + +# print results +include print_results_revised.inc; + Property changes on: SwiftApps/swift-galaxy/swift/stochmodel.run ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/swift-2stage =================================================================== --- SwiftApps/swift-galaxy/swift/swift-2stage (rev 0) +++ SwiftApps/swift-galaxy/swift/swift-2stage 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,319 @@ +#!/bin/bash + +site=$1 +data=$2 +n=$3 +outdir=$4 +logfile=$5 +htmlfile=$6 +mkdir -p $outdir +echo $@ >> /tmp/args.txt + +swift=/home/maheshwari/swift-0.94/cog/modules/swift/dist/swift-svn/bin/swift +# use "here" document for configs + +cat << EOF > /tmp/2stage.swift +type file; +type script; + +app (file o) s (file i) { + cat @i stdout=@o; +} + +file out1[]; +file out2[]; + +string d=@arg("data"); + +foreach j in [1:@toInt(@arg("n","1"))] { + file data; + out1[j] = s(data); + out2[j] = s(out1[j]); +} +EOF + +case "$site" in +midway ) +cat << 'EOF' > /tmp/sites.xml + + + + sandyb + 16 + 02:00:00 + 7500 + 100 + 100 + 2 + 1 + 1 + .31 + 10000 + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +midway echo echo +midway cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +uc3 ) +cat << 'EOF' > /tmp/sites.xml + + + + + .09 + 1000 + 1 + 3600 + 1 + 100 + 100 + 1 + UidDomain == "osg-gk.mwt2.org" + 1 + "group_friends.{env.USER}" + nonshared + + + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +uc3 echo /bin/echo +uc3 cat /bin/cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +stampede ) +cat << 'EOF' > /tmp/sites.xml + + + + + + + 16 + 16 + TG-STA110005S + normal + ketancmaheshwari at gmail.com + ALL + 02:00:00 + 8000 + 100 + 100 + 1 + 1 + 1 + .15 + 10000 + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +stampede echo echo +stampede cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +localhost ) +cat << 'EOF' > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +* ) +echo "defaulting to localhost" + +cat << 'EOF' > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; +esac + +$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/2stage.swift -n=$n -data=$data 2> std.err +EXITCODE=$? + +swiftlog=`\ls -t *.log | head -1` + +#/tmp/plotswiftlogs $logfile 2>gnuplot.err + +cat << 'EOF' > /tmp/plotswiftlogs +#!/bin/bash + +#usage: ./extract4plots + +SWIFTLOGFILE=$1 +#TMPDIR=`mktemp -d plotlog.XXX` +grep -i ProgressTicker $SWIFTLOGFILE > swiftoutfile.out +SWIFTOUTFILE=swiftoutfile.out +#extract start time +TMPDATE=`grep -i progress $SWIFTOUTFILE 2>/dev/null | head -n 1 | cut -f1-2 -d ' '` +START_TIME=`date +%s -d "$TMPDATE"` + +#extract end time +TMPDATE=`grep -i progress $SWIFTOUTFILE 2>/dev/null | tail -n 1 | cut -f1-2 -d ' '` +END_TIME=`date +%s -d "$TMPDATE"` + +#duration +DIFFTIME=$((END_TIME - START_TIME)) +#echo 0 > active.txt +#echo 0 > cumulative.txt +#extract active runs in a file +(grep -o -i "Active:[0-9]*" $SWIFTOUTFILE 2>/dev/null | awk -F: '{print $2}' >> active.txt) + +#extract successful completions in a file +(grep -o -i "Successfully:[0-9]*" $SWIFTOUTFILE 2>/dev/null | awk -F: '{print $2}' >> cumulative.txt) + +#prepare tics +activelines=`wc -l active.txt | awk '{print $1}'` +cumulines=`wc -l cumulative.txt | awk '{print $1}'` + +if [ $activelines -ne 0 ] +then + activelinespertic=`echo "scale=5 ; $DIFFTIME / $activelines" | bc` +fi +seq 0 $activelinespertic $DIFFTIME > activetics.txt + +if [ $cumulines -ne 0 ] +then + cumulinespertic=`echo "scale=5 ; $DIFFTIME / $cumulines" | bc` +fi + +seq 0 $cumulinespertic $DIFFTIME > cumultics.txt + +#final plot data +paste activetics.txt active.txt > plot_active.txt +paste cumultics.txt cumulative.txt > plot_cumulative.txt + +cat << EOF1 > plotit.gp +set terminal png enhanced +set output "activeplot.png" +set nokey +set xlabel "Time in sec" +set ylabel "number of active jobs" +set title "Active jobs" +plot "plot_active.txt" using 1:2 with line + +set output "cumulativeplot.png" +set ylabel "number of completed jobs" +set title "Cumulative jobs" +plot "plot_cumulative.txt" using 1:2 with lines +EOF1 + +gnuplot plotit.gp 2>/dev/null + +#cp *.png ../ +echo `pwd`>/tmp/curdir +echo `ls`>/tmp/dirlist +#cd .. +EOF + +sh /tmp/plotswiftlogs $swiftlog +cp *.png $outdir/ + +cat << EOF > $htmlfile + + + + + 2stage workflow output + + +

Swift run trace plots

+ +active plot +cumulative plot + +

Browse output of 2stage application

+`for i in \`find $outdir -type f\`; do echo "Output: \`basename $i\`
"; done` + + +EOF + +if [ "$EXITCODE" -ne "0" ]; then + cat std.err >&2 +fi +cp std.err $logfile +rm std.err +exit $EXITCODE Property changes on: SwiftApps/swift-galaxy/swift/swift-2stage ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/swift-3stage =================================================================== --- SwiftApps/swift-galaxy/swift/swift-3stage (rev 0) +++ SwiftApps/swift-galaxy/swift/swift-3stage 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,325 @@ +#!/bin/bash + +site=$1 +data=$2 +n=$3 +outdir=$4 +logfile=$5 +htmlfile=$6 +mkdir -p $outdir +echo $@ >> /tmp/args.txt + +swift=/home/maheshwari/swift-0.94/cog/modules/swift/dist/swift-svn/bin/swift +# use "here" document for configs + +cat << EOF > /tmp/2stage.swift +type file; +type script; + +app (file o) s (file i) { + cat @i stdout=@o; +} + +file out1[]; +file out2[]; + +string d=@arg("data"); + +foreach j in [1:@toInt(@arg("n","1"))] { + file data; + out1[j] = s(data); + out2[j] = s(out1[j]); +} +EOF + +case "$site" in +midway ) +cat << 'EOF' > /tmp/sites.xml + + + + sandyb + 16 + 02:00:00 + 7500 + 100 + 100 + 2 + 1 + 1 + .31 + 10000 + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +midway echo echo +midway cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +uc3 ) +cat << 'EOF' > /tmp/sites.xml + + + + + .09 + 1000 + 1 + 3600 + 1 + 100 + 100 + 1 + UidDomain == "osg-gk.mwt2.org" + 1 + "group_friends.{env.USER}" + nonshared + + + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +uc3 echo /bin/echo +uc3 cat /bin/cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +stampede ) +cat << 'EOF' > /tmp/sites.xml + + + + + + + 16 + 16 + TG-STA110005S + normal + ketancmaheshwari at gmail.com + ALL + 02:00:00 + 8000 + 100 + 100 + 1 + 1 + 1 + .15 + 10000 + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +stampede echo echo +stampede cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +localhost ) +cat << 'EOF' > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +* ) +echo "defaulting to localhost" + +cat << 'EOF' > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; +esac + +$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/2stage.swift -n=$n -data=$data 2> std.err +EXITCODE=$? + +swiftlog=`\ls -t *.log | head -1` + +#/tmp/plotswiftlogs $logfile 2>gnuplot.err + +cat << 'EOF' > /tmp/plotswiftlogs +#!/bin/bash + +#usage: ./extract4plots + +SWIFTLOGFILE=$1 +#TMPDIR=`mktemp -d plotlog.XXX` +grep -i ProgressTicker $SWIFTLOGFILE > swiftoutfile.out +SWIFTOUTFILE=swiftoutfile.out +#extract start time +TMPDATE=`grep -i progress $SWIFTOUTFILE 2>/dev/null | head -n 1 | cut -f1-2 -d ' '` +START_TIME=`date +%s -d "$TMPDATE"` + +#extract end time +TMPDATE=`grep -i progress $SWIFTOUTFILE 2>/dev/null | tail -n 1 | cut -f1-2 -d ' '` +END_TIME=`date +%s -d "$TMPDATE"` + +#duration +DIFFTIME=$((END_TIME - START_TIME)) +#echo 0 > active.txt +#echo 0 > cumulative.txt +#extract active runs in a file +(grep -o -i "Active:[0-9]*" $SWIFTOUTFILE 2>/dev/null | awk -F: '{print $2}' > active.txt) + +#extract successful completions in a file +(grep -o -i "Successfully:[0-9]*" $SWIFTOUTFILE 2>/dev/null | awk -F: '{print $2}' > cumulative.txt) + +#prepare tics +activelines=`wc -l active.txt | awk '{print $1}'` +cumulines=`wc -l cumulative.txt | awk '{print $1}'` + +if [ $activelines -ne 0 ] +then + activelinespertic=`echo "scale=5 ; $DIFFTIME / $activelines" | bc` +fi +seq 0 $activelinespertic $DIFFTIME > activetics.txt + +if [ $cumulines -ne 0 ] +then + cumulinespertic=`echo "scale=5 ; $DIFFTIME / $cumulines" | bc` +fi + +seq 0 $cumulinespertic $DIFFTIME > cumultics.txt + +#final plot data +paste activetics.txt active.txt > plot_active.txt +paste cumultics.txt cumulative.txt > plot_cumulative.txt + +cat << EOF1 > plotit.gp +set terminal png enhanced +set output "activeplot.png" +set nokey +set xlabel "Time in sec" +set ylabel "number of active jobs" +set title "Active jobs" +plot "plot_active.txt" using 1:2 with line + +set output "cumulativeplot.png" +set ylabel "number of completed jobs" +set title "Cumulative jobs" +plot "plot_cumulative.txt" using 1:2 with lines +EOF1 + +gnuplot plotit.gp 2>/dev/null + +#cp *.png ../ +echo `pwd`>/tmp/curdir +echo `ls`>/tmp/dirlist +#cd .. +EOF + +sh /tmp/plotswiftlogs $swiftlog +cp *.png $outdir/ + +#for i in `find $outdir` +#do +# lastfile=$i +#done +#bname=`basename $lastfile` + +cat << EOF > $htmlfile + + + + + 2stage workflow output + + +

Swift run trace plots

+ +active plot +cumulative plot + +

Browse output of 2stage application

+`for i in \`find $outdir -type f\`; do echo "Output: \`basename $i\`
"; done` + + +EOF + +if [ "$EXITCODE" -ne "0" ]; then + cat std.err >&2 +fi +cp std.err $logfile +rm std.err +exit $EXITCODE Property changes on: SwiftApps/swift-galaxy/swift/swift-3stage ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/swift-catsn =================================================================== --- SwiftApps/swift-galaxy/swift/swift-catsn (rev 0) +++ SwiftApps/swift-galaxy/swift/swift-catsn 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,328 @@ +#!/bin/bash + +#set -x +set -e + +site=$1 +data=$2 +n=$3 +outdir=$4 +logfile=$5 +htmlfile=$6 +mkdir -p $outdir + +swift=`which swift` +# use "here" document for configs + +cat << EOF > /tmp/catsn.swift +type file; + +app (file o) cat (file i) { + cat @i stdout=@o; +} +#file out[]; +file out[]; + +string d=@arg("data"); + +foreach j in [1:@toInt(@arg("n","1"))] { + file data; + out[j] = cat(data); +} +EOF + +case "$site" in +midway ) +cat << 'EOF' > /tmp/sites.xml + + + + + sandyb + 16 + 02:00:00 + 7500 + 100 + 100 + 2 + 1 + 1 + .31 + 10000 + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +midway echo echo +midway cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +uc3 ) +cat << 'EOF' > /tmp/sites.xml + + + + + + .09 + 1000 + 1 + 3600 + 1 + 100 + 100 + 1 + UidDomain == "osg-gk.mwt2.org" + 1 + "group_friends.{env.USER}" + nonshared + + + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +uc3 echo /bin/echo +uc3 cat /bin/cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +stampede ) +cat << 'EOF' > /tmp/sites.xml + + + + + + + + 16 + 16 + TG-STA110005S + normal + ketancmaheshwari at gmail.com + ALL + 02:00:00 + 8000 + 100 + 100 + 1 + 1 + 1 + .15 + 10000 + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +stampede echo echo +stampede cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +localhost ) +cat << 'EOF' > /tmp/sites.xml + + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +* ) +echo "defaulting to localhost" + +cat << 'EOF' > /tmp/sites.xml + + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; +esac + +$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/catsn.swift -n=$n -data=$data 2> std.err +EXITCODE=$? + +swiftlog=`\ls -t *.log | head -1` + +#/tmp/plotswiftlogs $logfile 2>gnuplot.err +cat << 'EOF' > /tmp/plotswiftlogs +#!/bin/bash + +#usage: ./extract4plots + +SWIFTLOGFILE=$1 +#TMPDIR=`mktemp -d plotlog.XXX` +grep -i ProgressTicker $SWIFTLOGFILE > swiftoutfile.out +SWIFTOUTFILE=swiftoutfile.out +#extract start time +TMPDATE=`grep -i progress $SWIFTOUTFILE 2>/dev/null | head -n 1 | cut -f1-2 -d ' '` +START_TIME=`date +%s -d "$TMPDATE"` + +#extract end time +TMPDATE=`grep -i progress $SWIFTOUTFILE 2>/dev/null | tail -n 1 | cut -f1-2 -d ' '` +END_TIME=`date +%s -d "$TMPDATE"` + +#duration +DIFFTIME=$((END_TIME - START_TIME)) +#echo 0 > active.txt +#echo 0 > cumulative.txt +#extract active runs in a file +(grep -o -i "Active:[0-9]*" $SWIFTOUTFILE 2>/dev/null | awk -F: '{print $2}' > active.txt) + +#extract successful completions in a file +(grep -o -i "Successfully:[0-9]*" $SWIFTOUTFILE 2>/dev/null | awk -F: '{print $2}' > cumulative.txt) + +#prepare tics +activelines=`wc -l active.txt | awk '{print $1}'` +cumulines=`wc -l cumulative.txt | awk '{print $1}'` + +if [ $activelines -ne 0 ] +then + activelinespertic=`echo "scale=5 ; $DIFFTIME / $activelines" | bc` +fi +seq 0 $activelinespertic $DIFFTIME > activetics.txt + +if [ $cumulines -ne 0 ] +then + cumulinespertic=`echo "scale=5 ; $DIFFTIME / $cumulines" | bc` +fi + +seq 0 $cumulinespertic $DIFFTIME > cumultics.txt + +#final plot data +paste activetics.txt active.txt > plot_active.txt +paste cumultics.txt cumulative.txt > plot_cumulative.txt + +cat << EOF1 > plotit.gp +set terminal png enhanced +set output "activeplot.png" +set nokey +set xlabel "Time in sec" +set ylabel "number of active jobs" +set title "Active jobs" +plot "plot_active.txt" using 1:2 with line + +set output "cumulativeplot.png" +set ylabel "number of completed jobs" +set title "Cumulative jobs" +plot "plot_cumulative.txt" using 1:2 with lines +EOF1 + +gnuplot plotit.gp 2>/dev/null + +#cp *.png ../ +echo `pwd`>/tmp/curdir +echo `ls`>/tmp/dirlist +#cd .. +EOF + +sh /tmp/plotswiftlogs $swiftlog +cp *.png $outdir/ + +#for i in `find $outdir` +#do +# lastfile=$i +#done +#bname=`basename $lastfile` + +cat << EOF > $htmlfile + + + + + Catsn output + + +

Swift run trace plots

+ +active plot +cumulative plot + +

Browse output of catsn application

+`for i in \`find $outdir -type f\`; do echo "Output: \`basename $i\`
"; done` + + +EOF + +if [ "$EXITCODE" -ne "0" ]; then + cat std.err >&2 +fi +cp std.err $logfile +rm std.err +exit $EXITCODE Property changes on: SwiftApps/swift-galaxy/swift/swift-catsn ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/swift-galaxy =================================================================== --- SwiftApps/swift-galaxy/swift/swift-galaxy (rev 0) +++ SwiftApps/swift-galaxy/swift/swift-galaxy 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,196 @@ +#!/bin/bash + +site=$1 +script=$2 +logfile=$3 + +ln -s $script script.swift +swift=/home/maheshwari/swift-0.94/cog/modules/swift/dist/swift-svn/bin/swift +# use "here" document for configs +case "$site" in +midway ) +cat << 'EOF' > /tmp/sites.xml + + + + sandyb + 16 + 02:00:00 + 7500 + 100 + 100 + 2 + 1 + 1 + .31 + 10000 + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +midway echo echo +midway cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +uc3 ) +cat << 'EOF' > /tmp/sites.xml + + + + + .09 + 1000 + 1 + 3600 + 1 + 100 + 100 + 1 + UidDomain == "osg-gk.mwt2.org" + 1 + "group_friends.{env.USER}" + nonshared + + + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +uc3 echo /bin/echo +uc3 cat /bin/cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +stampede ) +cat << 'EOF' > /tmp/sites.xml + + + + + + + 16 + 16 + TG-STA110005S + normal + ketancmaheshwari at gmail.com + ALL + 02:00:00 + 8000 + 100 + 100 + 1 + 1 + 1 + .15 + 10000 + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +stampede echo echo +stampede cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +localhost ) +cat << 'EOF' > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +* ) +echo "defaulting to localhost" +cat << 'EOF' > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; +esac + +$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf script.swift 2> std.err +EXITCODE=$? + +if [ "$EXITCODE" -ne "0" ]; then + cat std.err >&2 +fi +cp std.err $logfile +rm std.err +exit $EXITCODE Property changes on: SwiftApps/swift-galaxy/swift/swift-galaxy ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/swift-mysim =================================================================== --- SwiftApps/swift-galaxy/swift/swift-mysim (rev 0) +++ SwiftApps/swift-galaxy/swift/swift-mysim 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,282 @@ +#!/bin/bash + +site=$1 +nsim=$2 +steps=$3 +range=$4 +values=$5 +outdir=$6 +logfile=$7 +htmlfile=$8 + +mkdir -p $outdir + +swift=`which swift` +# use "here" document for configs + +cat << EOF > /tmp/mysim.swift +type file; + +app (file out, file log) simulation (int sim_steps, int sim_range, int sim_values) { + simulate "--timesteps" sim_steps "--range" sim_range "--nvalues" sim_values stdout=@out stderr=@log; +} + +app (file out, file log) analyze (file s[]) { + stats @filenames(s) stdout=@out stderr=@log; +} + +int nsim = @toInt(@arg("nsim", "10")); +int steps = @toInt(@arg("steps", "1")); +int range = @toInt(@arg("range", "100")); +int values = @toInt(@arg("values", "5")); + +file sims[]; + +foreach i in [0:nsim-1] { + file simout ; + file simlog ; + (simout,simlog) = simulation(steps,range,values); + sims[i] = simout; +} + +file stats_out<"output/average.out">; +file stats_log<"output/average.log">; +(stats_out, stats_log) = analyze(sims); +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF + +cat << 'EOF' > /tmp/tc +swiftgal echo echo +swiftgal cat cat +swiftgal simulate simulate.sh +swiftgal stats stats.sh +EOF + +case "$site" in +midway ) +cat << 'EOF' > /tmp/sites.xml + + + + + sandyb + 16 + 02:00:00 + 7500 + 100 + 100 + 4 + 2 + 2 + 1.27 + 10000 + /scratch/midway/maheshwari/swift.work + + +EOF + +;; + +uc3 ) +cat << 'EOF' > /tmp/sites.xml + + + + + + .09 + 1000 + 1 + 3600 + 1 + 100 + 100 + 1 + UidDomain == "osg-gk.mwt2.org" + 1 + "group_friends.{env.USER}" + nonshared + + + /tmp/swift.work + + +EOF + +;; + +stampede ) +cat << 'EOF' > /tmp/sites.xml + + + + + + 16 + 16 + TG-STA110005S + normal + ketancmaheshwari at gmail.com + ALL + 02:00:00 + 8000 + 100 + 100 + 1 + 1 + 1 + .15 + 10000 + /tmp/swift.work + + +EOF + +;; + +localhost ) +cat << 'EOF' > /tmp/sites.xml + + + + + + + /tmp/swift.work + 0.31 + + +EOF +;; + +* ) +echo "defaulting to localhost" + +cat << 'EOF' > /tmp/sites.xml + + + + + + + /tmp/swift.work + 0.31 + + +EOF +;; +esac + +$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/mysim.swift -nsim=$nsim -steps=$steps -range=$range -values=$values 2> std.err +EXITCODE=$? + +swiftlog=`\ls -t *.log | head -1` + +cat << 'EOF' > /tmp/plotswiftlogs +#!/bin/bash + +#usage: ./plotswiftlogs.ketan + +SWIFTLOGFILE=$1 + +#TMPDIR=`mktemp -d plotlog.XXX` + +grep -i ProgressTicker $SWIFTLOGFILE > swiftoutfile.out + +SWIFTOUTFILE=swiftoutfile.out + +#extract start time +TMPDATE=`grep -i progress $SWIFTOUTFILE 2>/dev/null | head -n 1 | cut -f1-2 -d ' '` +START_TIME=`date +%s -d "$TMPDATE"` + +#extract end time +TMPDATE=`grep -i progress $SWIFTOUTFILE 2>/dev/null | tail -n 1 | cut -f1-2 -d ' '` +END_TIME=`date +%s -d "$TMPDATE"` + +#duration +DIFFTIME=$((END_TIME - START_TIME)) + +#extract active runs in a file +(grep -o -i "Active:[0-9]*" $SWIFTOUTFILE 2>/dev/null | awk -F: '{print $2}' >active.txt) + +#extract successful completions in a file +(grep -o -i "Successfully:[0-9]*" $SWIFTOUTFILE 2>/dev/null | awk -F: '{print $2}' > cumulative.txt) + +#prepare tics +activelines=`wc -l active.txt | awk '{print $1}'` +cumulines=`wc -l cumulative.txt | awk '{print $1}'` + +if [ $activelines -ne 0 ] +then + activelinespertic=`echo "scale=5 ; $DIFFTIME / $activelines" | bc` +fi + +seq 0 $activelinespertic $DIFFTIME > activetics.txt + +if [ $cumulines -ne 0 ] +then + cumulinespertic=`echo "scale=5 ; $DIFFTIME / $cumulines" | bc` +fi + +seq 0 $cumulinespertic $DIFFTIME > cumultics.txt + +#final plot data +paste activetics.txt active.txt > plot_active.txt +paste cumultics.txt cumulative.txt > plot_cumulative.txt + +cat << EOF1 > plotit.gp +set terminal png enhanced +set nokey +set output "cumulativeplot.png" +set xlabel "Time in sec" +set ylabel "number of completed apps" +set title "Cumulative Apps Completed" +plot "plot_cumulative.txt" using 1:2 with lines +set output "activeplot.png" +set xlabel "Time in sec" +set ylabel "number of active apps" +set title "Active Apps" +plot "plot_active.txt" using 1:2 with line +EOF1 + +gnuplot plotit.gp 2>/dev/null +rm swiftoutfile.out plotit.gp active.txt cumulative.txt activetics.txt plot_active.txt plot_cumulative.txt cumultics.txt + +EOF + +sh /tmp/plotswiftlogs $swiftlog +cp *.png $outdir/ + +cat << EOF > $htmlfile + + + + + Application output + + +

Swift run trace plots

+ +active plot +cumulative plot + +

Browse output of application

+`for i in \`find $outdir -type f\`; do echo "Output: \`basename $i\`
"; done` + + +EOF + +if [ "$EXITCODE" -ne "0" ]; then + cat std.err >&2 +fi +cp std.err $logfile +rm std.err +exit $EXITCODE Property changes on: SwiftApps/swift-galaxy/swift/swift-mysim ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/swift-powergrid =================================================================== --- SwiftApps/swift-galaxy/swift/swift-powergrid (rev 0) +++ SwiftApps/swift-galaxy/swift/swift-powergrid 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,321 @@ +#!/bin/bash + +site=$1 +batch=$2 +#stochmodel=$3 +#edrevised=$4 +#asciidata=$5 +#printres=$6 +#illinois=$7 +#wind_data=$8 +logfile=$3 + +#cp $stochmodel stochmodel.run +#cp $edrevised edrevised.mod +#cp $asciidata set_data_ascii.inc +#cp $printres print_results_revised.inc +#cp $illinois Illinois.tgz +#cp $wind_data wind_data.dat +echo $@>>/tmp/tmp.txt +#swift=/home/maheshwari/swift-0.94/cog/modules/swift/dist/swift-svn/bin/swift +swift=/home/maheshwari/swift-devel/cog/modules/swift/dist/swift-svn/bin/swift +# use "here" document for configs + +cat << 'EOF' > /tmp/inference4galaxy.swift +type file; + +app ( file _obj_out, file _xhat_out1, file _xhat_out2, file _ampl_res, file _out) + ampl_app ( int _s, + int _fix_x, + file _stoch_model, + file _illinois, + file _edrevised_model, + file _ascii_data, + file _print_results, + file _wind_data + ) { + runampl _s _fix_x @_stoch_model @_xhat_out1 @_xhat_out2 @_obj_out @_illinois @_edrevised_model @_ascii_data @_print_results @_ampl_res @_wind_data stdout=@_out; +} + +app (file _obj_out, file _ampl_l_res, file _out) ampl_app_L ( + int _s, + int _fix_x, + file _stoch_model, + file _illinois, + file _edrevised_model, + file _ascii_data, + file _print_results + ) { + + runampl_l _s _fix_x @_stoch_model @_obj_out @_illinois @_edrevised_model @_ascii_data @_print_results @_ampl_l_res stdout=@_out; +} + +app (file _obj_out, file _ampl_u_res, file _out) ampl_app_U ( + int _s, + int _fix_x, + file _stoch_model, + file _xhat, + file _illinois, + file _edrevised_model, + file _ascii_data, + file _print_results, + file _wind_data + ) { + + runampl_u _s _fix_x @_stoch_model @_xhat @_obj_out @_illinois @_edrevised_model @_ascii_data @_print_results @_ampl_u_res @_wind_data stdout=@_out; +} +file stoch_model<"/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/stochmodel.run">; +file edrevised_model<"/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/edrevised.mod">; +file ascii_data<"/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/set_data_ascii.inc">; +file print_results<"/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/print_results_revised.inc">; +file illinois<"/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/Illinois.tgz">; +file wind_data<"/scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/wind_data.dat">; + +file out[] ; +file obj_out[] ; +file ampl_res[] ; + +file xhat_out1[] ; +file xhat_out2[] ; + +file out_l[][][] ; +file obj_out_l[][][] ; +file ampl_l_res[][][] ; +file xhat_out_l1[][][] ; +file xhat_out_l2[][][] ; + +file out_u[][][] ; +file obj_out_u[][][] ; +file ampl_u_res[][][] ; +#file upper_out[][][] ; +#file lower_out[][][] ; + +int nS[] = [10]; //number of scenario sweeps +int Batch = @toInt(@arg("batch", "20")); + +foreach S, idxs in nS{ +(obj_out[idxs], xhat_out1[idxs], xhat_out2[idxs], ampl_res[idxs], out[idxs]) = ampl_app (S, 0, stoch_model, illinois, edrevised_model, ascii_data, print_results, wind_data); + + +foreach B, idxb in [10:Batch:10]{ + foreach k in [0:B]{ + (obj_out_l[idxs][idxb][k], xhat_out_l1[idxs][idxb][k], xhat_out_l2[idxs][idxb][k], ampl_l_res[idxs][idxb][k], out_l[idxs][idxb][k]) = ampl_app (S, 0, stoch_model, illinois, edrevised_model, ascii_data, print_results, wind_data); + + (obj_out_u[idxs][idxb][k], ampl_u_res[idxs][idxb][k], out_u[idxs][idxb][k]) = ampl_app_U(S, 1, stoch_model, xhat_out1[idxs], illinois, edrevised_model, ascii_data, print_results, wind_data); + +} +} +} +EOF + +case "$site" in +midway ) +cat << 'EOF' > /tmp/sites.xml + + + + + sandyb + 16 + 02:00:00 + 7500 + 100 + 100 + 2 + 1 + 1 + .31 + 10000 + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +midway echo echo +midway cat cat +midway gensample /home/maheshwari/powergridapps/bin/gensample.py +midway runampl /home/maheshwari/powergridapps/bin/run_ampl.py +midway runampl_l /home/maheshwari/powergridapps/bin/run_ampl_l.py +midway runampl_u /home/maheshwari/powergridapps/bin/run_ampl_u.py +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=0 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +use.wrapper.staging=false +EOF +;; + +uc3 ) +cat << 'EOF' > /tmp/sites.xml + + + + + .09 + 1000 + 1 + 3600 + 1 + 100 + 100 + 1 + UidDomain == "osg-gk.mwt2.org" + 1 + "group_friends.{env.USER}" + nonshared + + + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +uc3 echo /bin/echo +uc3 cat /bin/cat +uc3 runampl run_ampl.py +uc3 runampl_l run_ampl_l.py +uc3 runampl_u run_ampl_u.py +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +stampede ) +cat << 'EOF' > /tmp/sites.xml + + + + + + 16 + 16 + TG-EAR130015 + normal + ketancmaheshwari at gmail.com + ALL + 02:00:00 + 8000 + 100 + 100 + 1 + 1 + 1 + .15 + 10000 + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +stampede echo echo +stampede cat cat +stampede gensample gensample.py +stampede runampl run_ampl.py +stampede runampl_l run_ampl_l.py +stampede runampl_u run_ampl_u.py +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=0 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +use.wrapper.staging=false +EOF +;; + +localhost ) +cat << 'EOF' > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.2 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +localhost gensample /home/maheshwari/powergridapps/bin/gensample.py +localhost runampl /home/maheshwari/powergridapps/bin/run_ampl.py +localhost runampl_l /home/maheshwari/powergridapps/bin/run_ampl_l.py +localhost runampl_u /home/maheshwari/powergridapps/bin/run_ampl_u.py +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=0 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +use.wrapper.staging=false +EOF +;; + +* ) +echo "defaulting to localhost" +cat << 'EOF' > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +localhost gensample /home/maheshwari/powergridapps/bin/gensample.py +localhost runampl /home/maheshwari/powergridapps/bin/run_ampl.py +localhost runampl_l /home/maheshwari/powergridapps/bin/run_ampl_l.py +localhost runampl_u /home/maheshwari/powergridapps/bin/run_ampl_u.py +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=0 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; +esac + +$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/inference4galaxy.swift -batch=$batch 2> std.err +#$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/inference4galaxy.swift -batch=$batch -stochmodel=stochmodel.run -edrevised=edrevised.mod -asciidata=set_data_ascii.inc -printres=print_results_revised.inc -illinois=Illinois.tgz -wind_data=wind_data.dat 2> std.err + +EXITCODE=$? + +if [ "$EXITCODE" -ne "0" ]; then + cat std.err >&2 +fi +cp std.err $logfile +rm std.err +exit $EXITCODE Property changes on: SwiftApps/swift-galaxy/swift/swift-powergrid ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/swift-stats =================================================================== --- SwiftApps/swift-galaxy/swift/swift-stats (rev 0) +++ SwiftApps/swift-galaxy/swift/swift-stats 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,205 @@ +#!/bin/bash +# swift-stats "$site.site_select" "$n" "$html_file.files_path" "$log_file" "$html_file" "$site.walltime" "$site.slots" "$site.queue" "$site.nodes" "$site.throttle" "$site.workdir" +# 1 2 3 4 5 6 7 8 9 10 11 + +site=$1 +n=$2 +outdir=$3 +logfile=$4 +htmlfile=$5 +walltime=$6 +slots=$7 +queue=$8 +nodes=$9 +conc=${10} +workdir=${11} +throttle=$(echo "scale=5;($conc-1)/100" |bc) + +mkdir -p $outdir + +echo $6 > /tmp/args.txt + +swift=`\which swift` + +# use "here" document for configs +cat << EOF > /tmp/stats.swift +type file; + +app (file o) statsapp () { + stats stdout=@o; +} + +file out[]; + +foreach j in [1:@toInt(@arg("n","2"))] { + out[j] = statsapp (); +} +EOF + +case "$site" in +clusterPBS ) +cat << EOF > /tmp/sites.xml + + + + + default + 24 + ${walltime} + pbs.aprun;pbs.mpp;depth=24 + 100 + 100 + ${slots} + ${nodes} + ${nodes} + ${throttle} + 10000 + ${workdir} + + +EOF + +cat << EOF > /tmp/tc +clusterpbs echo echo +clusterpbs cat cat +clusterpbs stats stats.sh +EOF + +cat << EOF > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +clusterSLURM ) +cat << EOF > /tmp/sites.xml + + + + + ${queue} + 8 + 8 + ${walltime} + 100 + 100 + ${slots} + ${nodes} + ${nodes} + ${throttle} + 10000 + ${workdir} + + +EOF + +cat << EOF > /tmp/tc +clusterslurm echo echo +clusterslurm cat cat +clusterslurm stats stats.sh +EOF + +cat << EOF > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=0 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +localhost ) +cat << EOF > /tmp/sites.xml + + + + + 0.02 + 10000 + + /tmp/swift.work + local + + +EOF + +cat << EOF > /tmp/tc +localhost echo echo +localhost cat cat +localhost stats stats.sh +EOF + +cat << EOF > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=0 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +* ) +echo "defaulting to localhost" + +cat << EOF > /tmp/sites.xml + + + + + 0.02 + 10000 + + /tmp/swift.work + local + + +EOF + +cat << EOF > /tmp/tc +localhost echo echo +localhost cat cat +localhost stats stats.sh +EOF + +cat << EOF > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=0 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; +esac + +$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/stats.swift -n=$n -data=$data 2> std.err +EXITCODE=$? + +swiftlog=`\ls -t *.log | head -1` + +cat << EOF > $htmlfile + + + + + Hello output + + +

Browse output of hello application

+`for i in \`find $outdir -type f\`; do echo "Output: \`basename $i\`
"; done` + + +EOF + +if [ "$EXITCODE" -ne "0" ]; then + cat std.err >&2 +fi +cp std.err $logfile +rm std.err +exit $EXITCODE Added: SwiftApps/swift-galaxy/swift/swift-try =================================================================== --- SwiftApps/swift-galaxy/swift/swift-try (rev 0) +++ SwiftApps/swift-galaxy/swift/swift-try 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,341 @@ +#!/bin/bash + +site=$1 +nsim=$2 +steps=$3 +range=$4 +values=$5 +outdir=$6 +logfile=$7 +htmlfile=$8 + +mkdir -p $outdir + +swift=`which swift` +# use "here" document for configs + +cat << EOF > /tmp/mysim.swift +type file; + +app (file out, file log) simulation (int sim_steps, int sim_range, int sim_values) +{ + simulate "--timesteps" sim_steps "--range" sim_range "--nvalues" sim_values stdout=@out stderr=@log; +} + +app (file out, file log) analyze (file s[]) +{ + stats @filenames(s) stdout=@out stderr=@log; +} + +int nsim = @toInt(@arg("nsim", "10")); +int steps = @toInt(@arg("steps", "1")); +int range = @toInt(@arg("range", "100")); +int values = @toInt(@arg("values", "5")); + +file sims[]; + +foreach i in [0:nsim-1] { + file simout ; + file simlog ; + (simout,simlog) = simulation(steps,range,values); + sims[i] = simout; +} + +file stats_out<"output/average.out">; +file stats_log<"output/average.log">; +(stats_out, stats_log) = analyze(sims); + +EOF + +case "$site" in +midway ) +cat << 'EOF' > /tmp/sites.xml + + + + + sandyb + 16 + 02:00:00 + 7500 + 100 + 100 + 4 + 2 + 2 + 1.27 + 10000 + /scratch/midway/maheshwari/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +midway echo echo +midway cat cat +midway simulate simulate.sh +midway stats stats.sh +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +uc3 ) +cat << 'EOF' > /tmp/sites.xml + + + + + + .09 + 1000 + 1 + 3600 + 1 + 100 + 100 + 1 + UidDomain == "osg-gk.mwt2.org" + 1 + "group_friends.{env.USER}" + nonshared + + + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +uc3 echo /bin/echo +uc3 cat /bin/cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +stampede ) +cat << 'EOF' > /tmp/sites.xml + + + + + + + + 16 + 16 + TG-STA110005S + normal + ketancmaheshwari at gmail.com + ALL + 02:00:00 + 8000 + 100 + 100 + 1 + 1 + 1 + .15 + 10000 + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +stampede echo echo +stampede cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +localhost ) +cat << 'EOF' > /tmp/sites.xml + + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +* ) +echo "defaulting to localhost" + +cat << 'EOF' > /tmp/sites.xml + + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; +esac + +$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/mysim.swift -nsim=$nsim -steps=$steps -range=$range -values=$values 2> std.err +EXITCODE=$? + +swiftlog=`\ls -t *.log | head -1` + +#/tmp/plotswiftlogs $logfile 2>gnuplot.err +cat << 'EOF' > /tmp/plotswiftlogs +#!/bin/bash + +#usage: ./plotswiftlogs.ketan + +SWIFTLOGFILE=$1 + +#TMPDIR=`mktemp -d plotlog.XXX` + +grep -i ProgressTicker $SWIFTLOGFILE > swiftoutfile.out + +SWIFTOUTFILE=swiftoutfile.out + +#extract start time +TMPDATE=`grep -i progress $SWIFTOUTFILE 2>/dev/null | head -n 1 | cut -f1-2 -d ' '` +START_TIME=`date +%s -d "$TMPDATE"` + +#extract end time +TMPDATE=`grep -i progress $SWIFTOUTFILE 2>/dev/null | tail -n 1 | cut -f1-2 -d ' '` +END_TIME=`date +%s -d "$TMPDATE"` + +#duration +DIFFTIME=$((END_TIME - START_TIME)) + +#extract active runs in a file +(grep -o -i "Active:[0-9]*" $SWIFTOUTFILE 2>/dev/null | awk -F: '{print $2}' >active.txt) + +#extract successful completions in a file +(grep -o -i "Successfully:[0-9]*" $SWIFTOUTFILE 2>/dev/null | awk -F: '{print $2}' > cumulative.txt) + +#prepare tics +activelines=`wc -l active.txt | awk '{print $1}'` +cumulines=`wc -l cumulative.txt | awk '{print $1}'` + +if [ $activelines -ne 0 ] +then + activelinespertic=`echo "scale=5 ; $DIFFTIME / $activelines" | bc` +fi + +seq 0 $activelinespertic $DIFFTIME > activetics.txt + +if [ $cumulines -ne 0 ] +then + cumulinespertic=`echo "scale=5 ; $DIFFTIME / $cumulines" | bc` +fi + +seq 0 $cumulinespertic $DIFFTIME > cumultics.txt + +#final plot data +paste activetics.txt active.txt > plot_active.txt +paste cumultics.txt cumulative.txt > plot_cumulative.txt + +cat << EOF1 > plotit.gp +set terminal png enhanced +set nokey +set output "cumulativeplot.png" +set xlabel "Time in sec" +set ylabel "number of completed apps" +set title "Cumulative Apps Completed" +plot "plot_cumulative.txt" using 1:2 with lines +set output "activeplot.png" +set xlabel "Time in sec" +set ylabel "number of active apps" +set title "Active Apps" +plot "plot_active.txt" using 1:2 with line +EOF1 + +gnuplot plotit.gp 2>/dev/null +rm swiftoutfile.out plotit.gp active.txt cumulative.txt activetics.txt plot_active.txt plot_cumulative.txt cumultics.txt + +EOF + +sh /tmp/plotswiftlogs $swiftlog +cp *.png $outdir/ + +cat << EOF > $htmlfile + + + + + Application output + + +

Swift run trace plots

+ +active plot +cumulative plot + +

Browse output of application

+`for i in \`find $outdir -type f\`; do echo "Output: \`basename $i\`
"; done` + + +EOF + +if [ "$EXITCODE" -ne "0" ]; then + cat std.err >&2 +fi +cp std.err $logfile +rm std.err +exit $EXITCODE Property changes on: SwiftApps/swift-galaxy/swift/swift-try ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/swift.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swift.xml (rev 0) +++ SwiftApps/swift-galaxy/swift/swift.xml 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,40 @@ + + A generic Swift tool to run Swift workflows + + + swift-galaxy $site $script $log_file + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Added: SwiftApps/swift-galaxy/swift/tc =================================================================== --- SwiftApps/swift-galaxy/swift/tc (rev 0) +++ SwiftApps/swift-galaxy/swift/tc 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,7 @@ +localhost echo echo +localhost cat cat +localhost gensample /home/maheshwari/powergridapps/bin/gensample.py +localhost runampl /home/maheshwari/powergridapps/bin/run_ampl.py +localhost runampl_l /home/maheshwari/powergridapps/bin/run_ampl_l.py +localhost runampl_u /home/maheshwari/powergridapps/bin/run_ampl_u.py +localhost stage /scratch/midway/maheshwari/globusonline-galaxy-globus-738fb324c285/tools/swift/dogftp.sh Added: SwiftApps/swift-galaxy/swift/tmp.out =================================================================== --- SwiftApps/swift-galaxy/swift/tmp.out (rev 0) +++ SwiftApps/swift-galaxy/swift/tmp.out 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,20 @@ +Warning: The @ syntax for function invocation is deprecated +[Error] sites.xml, line 1, col 9: cvc-elt.1: Cannot find the declaration of element 'config'. +Progress: time: Wed, 25 Sep 2013 16:28:54 +0000 +Progress: time: Wed, 25 Sep 2013 16:28:55 +0000 Selecting site:1 Submitted:32 +Progress: time: Wed, 25 Sep 2013 16:29:17 +0000 Selecting site:1 Stage in:32 +Progress: time: Wed, 25 Sep 2013 16:29:21 +0000 Selecting site:1 Active:32 +Progress: time: Wed, 25 Sep 2013 16:29:48 +0000 Selecting site:30 Stage in:3 Active:28 Finished successfully:4 +Progress: time: Wed, 25 Sep 2013 16:29:49 +0000 Selecting site:6 Stage in:19 Submitted:6 Active:2 Stage out:5 Finished successfully:27 +Progress: time: Wed, 25 Sep 2013 16:29:50 +0000 Selecting site:1 Stage in:28 Active:4 Finished successfully:32 +Progress: time: Wed, 25 Sep 2013 16:29:51 +0000 Selecting site:1 Stage in:25 Active:7 Finished successfully:32 +Progress: time: Wed, 25 Sep 2013 16:29:52 +0000 Selecting site:1 Active:32 Finished successfully:32 +Progress: time: Wed, 25 Sep 2013 16:29:58 +0000 Active:32 Finished successfully:33 +Progress: time: Wed, 25 Sep 2013 16:29:59 +0000 Active:29 Finished successfully:36 +Progress: time: Wed, 25 Sep 2013 16:30:00 +0000 Active:26 Finished successfully:39 +Progress: time: Wed, 25 Sep 2013 16:30:01 +0000 Active:23 Finished successfully:42 +Progress: time: Wed, 25 Sep 2013 16:30:02 +0000 Active:22 Finished successfully:43 +Progress: time: Wed, 25 Sep 2013 16:30:03 +0000 Active:14 Finished successfully:51 +Progress: time: Wed, 25 Sep 2013 16:30:04 +0000 Active:8 Finished successfully:57 +Progress: time: Wed, 25 Sep 2013 16:30:05 +0000 Active:1 Finished successfully:64 +Final status: Wed, 25 Sep 2013 16:30:07 +0000 Finished successfully:65 Added: SwiftApps/swift-galaxy/swift/try.xml =================================================================== --- SwiftApps/swift-galaxy/swift/try.xml (rev 0) +++ SwiftApps/swift-galaxy/swift/try.xml 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,31 @@ + + Try Swift + + + swift-try $site $swiftscript $log_file + + + + + + + + + + + + + + + + + + + Added: SwiftApps/swift-galaxy/swift/wind_data.dat =================================================================== --- SwiftApps/swift-galaxy/swift/wind_data.dat (rev 0) +++ SwiftApps/swift-galaxy/swift/wind_data.dat 2014-01-24 16:34:22 UTC (rev 7507) @@ -0,0 +1,8761 @@ + 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+ 1.1483937e+004 + 1.1444137e+004 + 1.1145743e+004 + 1.0879900e+004 + 1.0958261e+004 + 1.1395920e+004 + 1.0888674e+004 + 1.0412822e+004 + 9.9142688e+003 + 9.5805745e+003 + 9.0602204e+003 + 8.9447336e+003 + 8.3338607e+003 + 5.2623176e+003 + 6.1992126e+003 + 6.6080458e+003 + 8.9456742e+003 + 1.0699771e+004 + 1.0954132e+004 + 1.1644000e+004 + 1.2029956e+004 + 1.1895722e+004 + 1.2017569e+004 + 1.2144519e+004 + 1.2458809e+004 + 1.0662727e+004 + 1.1603767e+004 + 1.2397715e+004 + 1.2339432e+004 + 1.2364182e+004 + 1.3599119e+004 + 1.4144389e+004 + 1.4187817e+004 + 1.3812512e+004 + 1.3107417e+004 + 1.2306262e+004 + 1.2775950e+004 + 8.9080654e+003 + 1.0985420e+004 + 1.0995708e+004 + 1.0460706e+004 + 1.0746053e+004 + 1.0667141e+004 + 1.0622371e+004 Property changes on: SwiftApps/swift-galaxy/swift/wind_data.dat ___________________________________________________________________ Added: svn:executable + * From lgadelha at ci.uchicago.edu Fri Jan 24 15:53:50 2014 From: lgadelha at ci.uchicago.edu (lgadelha at ci.uchicago.edu) Date: Fri, 24 Jan 2014 15:53:50 -0600 (CST) Subject: [Swift-commit] r7508 - in provenancedb: . tags Message-ID: <20140124215350.0ED0F178884@svn.ci.uchicago.edu> Author: lgadelha Date: 2014-01-24 15:53:49 -0600 (Fri, 24 Jan 2014) New Revision: 7508 Modified: provenancedb/prov-init.sql provenancedb/prov-to-sql.sh provenancedb/tags/tags-init.sql Log: Fix runtime stats extraction script. Modified: provenancedb/prov-init.sql =================================================================== --- provenancedb/prov-init.sql 2014-01-24 16:34:22 UTC (rev 7507) +++ provenancedb/prov-init.sql 2014-01-24 21:53:49 UTC (rev 7508) @@ -161,21 +161,6 @@ exit_status numeric ); --- maxrss numeric, --- walltime numeric, --- systime numeric, --- usertime numeric, --- cpu numeric, --- fsin numeric, --- fsout numeric, --- timesswpd numeric, --- socketrecv numeric, --- socketsent numeric, --- majpfaults numeric, --- minpfaults numeric, --- ctxswinv numeric, --- ctxswvol numeric, - create view application_execution as select id, app_fun_call_id as function_call_id, to_timestamp(start_time) as start_time, duration, final_state, site from app_exec; Modified: provenancedb/prov-to-sql.sh =================================================================== --- provenancedb/prov-to-sql.sh 2014-01-24 16:34:22 UTC (rev 7507) +++ provenancedb/prov-to-sql.sh 2014-01-24 21:53:49 UTC (rev 7508) @@ -138,8 +138,8 @@ real_secs=$(echo $runtime | awk -F "," '{print $1}' | awk -F ":" '{print $2}') kernel_secs=$(echo $runtime | awk -F "," '{print $2}' | awk -F ":" '{print $2}') user_secs=$(echo $runtime | awk -F "," '{print $3}' | awk -F ":" '{print $2}') - percent_cpu=$(echo $runtime | awk -F "," '{print $3}' | awk -F ":" '{print $2}') - max_rss=$(echo $runtime | awk -F "," '{print $3}' | awk -F ":" '{print $2}') + percent_cpu=$(echo $runtime | awk -F "," '{print $4}' | awk -F ":" '{print $2}' | awk -F "%" '{print $1}') + max_rss=$(echo $runtime | awk -F "," '{print $5}' | awk -F ":" '{print $2}') avg_rss=$(echo $runtime | awk -F "," '{print $6}' | awk -F ":" '{print $2}') avg_tot_vm=$(echo $runtime | awk -F "," '{print $7}' | awk -F ":" '{print $2}') avg_priv_data=$(echo $runtime | awk -F "," '{print $8}' | awk -F ":" '{print $2}') @@ -149,14 +149,14 @@ major_pgfaults=$(echo $runtime | awk -F "," '{print $12}' | awk -F ":" '{print $2}') minor_pgfaults=$(echo $runtime | awk -F "," '{print $13}' | awk -F ":" '{print $2}') swaps=$(echo $runtime | awk -F "," '{print $14}' | awk -F ":" '{print $2}') - invol_context_switches=$(echo $runtime | awk -F "," '{print $2}' | awk -F ":" '{print $2}') - vol_waits=$(echo $runtime | awk -F "," '{print $15}' | awk -F ":" '{print $2}') - fs_reads=$(echo $runtime | awk -F "," '{print $16}' | awk -F ":" '{print $2}') - fs_writes=$(echo $runtime | awk -F "," '{print $17}' | awk -F ":" '{print $2}') - sock_recv=$(echo $runtime | awk -F "," '{print $18}' | awk -F ":" '{print $2}') - sock_send=$(echo $runtime | awk -F "," '{print $19}' | awk -F ":" '{print $2}') - signals=$(echo $runtime | awk -F "," '{print $20}' | awk -F ":" '{print $2}') - exit_status=$(echo $runtime | awk -F "," '{print $21}' | awk -F ":" '{print $2}') + invol_context_switches=$(echo $runtime | awk -F "," '{print $15}' | awk -F ":" '{print $2}') + vol_waits=$(echo $runtime | awk -F "," '{print $16}' | awk -F ":" '{print $2}') + fs_reads=$(echo $runtime | awk -F "," '{print $17}' | awk -F ":" '{print $2}') + fs_writes=$(echo $runtime | awk -F "," '{print $18}' | awk -F ":" '{print $2}') + sock_recv=$(echo $runtime | awk -F "," '{print $19}' | awk -F ":" '{print $2}') + sock_send=$(echo $runtime | awk -F "," '{print $20}' | awk -F ":" '{print $2}') + signals=$(echo $runtime | awk -F "," '{print $21}' | awk -F ":" '{print $2}') + exit_status=$(echo $runtime | awk -F "," '{print $22}' | awk -F ":" '{print $2}') echo "UPDATE app_exec SET real_secs='$real_secs', kernel_secs='$kernel_secs', user_secs='$user_secs', percent_cpu='$percent_cpu', max_rss='$max_rss', avg_rss='$avg_rss', avg_tot_vm='$avg_tot_vm', avg_priv_data='$avg_priv_data', avg_priv_stack='$avg_priv_stack', avg_shared_text='$avg_shared_text', page_size='$page_size', major_pgfaults='$major_pgfaults', minor_pgfaults='$minor_pgfaults', swaps='$swaps', invol_context_switches='$invol_context_switches', vol_waits='$vol_waits', fs_reads='$fs_reads', fs_writes='$fs_writes', sock_recv='$sock_recv', sock_send='$sock_send', signals='$signals', exit_status='$exit_status' WHERE id='$execute2_id';" >> /tmp/$RUNID.sql #echo "INSERT INTO rt_info (app_exec_id, timestamp, cpu_usage, max_phys_mem, max_virt_mem, io_read, io_write) VALUES ('$execute2_id', $timestamp, $cpu_usage, $max_phys_mem, $max_virtual_mem, $io_read_bytes, $io_write_bytes);" >> /tmp/$RUNID.sql Modified: provenancedb/tags/tags-init.sql =================================================================== --- provenancedb/tags/tags-init.sql 2014-01-24 16:34:22 UTC (rev 7507) +++ provenancedb/tags/tags-init.sql 2014-01-24 21:53:49 UTC (rev 7508) @@ -30,3 +30,7 @@ -- primary key (dataset_id, name) ); +create view annotation as + select dataset_id, name, NULL as numeric_value, value as text_value from annot_dataset_text + union all + select dataset_id, name, value as numeric_value, NULL as text_value from annot_dataset_num; From ketan at ci.uchicago.edu Sat Jan 25 10:11:31 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Sat, 25 Jan 2014 10:11:31 -0600 (CST) Subject: [Swift-commit] r7509 - SwiftApps/swift-galaxy/swift Message-ID: <20140125161131.0EF819CFBF@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-25 10:11:30 -0600 (Sat, 25 Jan 2014) New Revision: 7509 Added: SwiftApps/swift-galaxy/swift/genericswift.xml SwiftApps/swift-galaxy/swift/swift-galaxy.sh Removed: SwiftApps/swift-galaxy/swift/swift-galaxy SwiftApps/swift-galaxy/swift/swift.xml Modified: SwiftApps/swift-galaxy/swift/catsn.swift Log: generic swift Modified: SwiftApps/swift-galaxy/swift/catsn.swift =================================================================== --- SwiftApps/swift-galaxy/swift/catsn.swift 2014-01-24 21:53:49 UTC (rev 7508) +++ SwiftApps/swift-galaxy/swift/catsn.swift 2014-01-25 16:11:30 UTC (rev 7509) @@ -5,7 +5,7 @@ } file out[]; -foreach j in [1:1000] { - file data; +foreach j in [1:10] { + file data; out[j] = cat(data); } Copied: SwiftApps/swift-galaxy/swift/genericswift.xml (from rev 7508, SwiftApps/swift-galaxy/swift/swift.xml) =================================================================== --- SwiftApps/swift-galaxy/swift/genericswift.xml (rev 0) +++ SwiftApps/swift-galaxy/swift/genericswift.xml 2014-01-25 16:11:30 UTC (rev 7509) @@ -0,0 +1,43 @@ + + A generic Swift tool to run Swift workflows + + + swift-galaxy.sh + $site + $script + $log_file + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Deleted: SwiftApps/swift-galaxy/swift/swift-galaxy =================================================================== --- SwiftApps/swift-galaxy/swift/swift-galaxy 2014-01-24 21:53:49 UTC (rev 7508) +++ SwiftApps/swift-galaxy/swift/swift-galaxy 2014-01-25 16:11:30 UTC (rev 7509) @@ -1,196 +0,0 @@ -#!/bin/bash - -site=$1 -script=$2 -logfile=$3 - -ln -s $script script.swift -swift=/home/maheshwari/swift-0.94/cog/modules/swift/dist/swift-svn/bin/swift -# use "here" document for configs -case "$site" in -midway ) -cat << 'EOF' > /tmp/sites.xml - - - - sandyb - 16 - 02:00:00 - 7500 - 100 - 100 - 2 - 1 - 1 - .31 - 10000 - /tmp/swift.work - - -EOF - -cat << 'EOF' > /tmp/tc -midway echo echo -midway cat cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=true -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; - -uc3 ) -cat << 'EOF' > /tmp/sites.xml - - - - - .09 - 1000 - 1 - 3600 - 1 - 100 - 100 - 1 - UidDomain == "osg-gk.mwt2.org" - 1 - "group_friends.{env.USER}" - nonshared - - - /tmp/swift.work - - -EOF - -cat << 'EOF' > /tmp/tc -uc3 echo /bin/echo -uc3 cat /bin/cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=true -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; - -stampede ) -cat << 'EOF' > /tmp/sites.xml - - - - - - - 16 - 16 - TG-STA110005S - normal - ketancmaheshwari at gmail.com - ALL - 02:00:00 - 8000 - 100 - 100 - 1 - 1 - 1 - .15 - 10000 - /tmp/swift.work - - -EOF - -cat << 'EOF' > /tmp/tc -stampede echo echo -stampede cat cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=true -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; - -localhost ) -cat << 'EOF' > /tmp/sites.xml - - - - - - /tmp/swift.work - 0.31 - - -EOF - -cat << 'EOF' > /tmp/tc -localhost echo echo -localhost cat cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=false -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; - -* ) -echo "defaulting to localhost" -cat << 'EOF' > /tmp/sites.xml - - - - - - /tmp/swift.work - 0.31 - - -EOF - -cat << 'EOF' > /tmp/tc -localhost echo echo -localhost cat cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=false -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; -esac - -$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf script.swift 2> std.err -EXITCODE=$? - -if [ "$EXITCODE" -ne "0" ]; then - cat std.err >&2 -fi -cp std.err $logfile -rm std.err -exit $EXITCODE Copied: SwiftApps/swift-galaxy/swift/swift-galaxy.sh (from rev 7508, SwiftApps/swift-galaxy/swift/swift-galaxy) =================================================================== --- SwiftApps/swift-galaxy/swift/swift-galaxy.sh (rev 0) +++ SwiftApps/swift-galaxy/swift/swift-galaxy.sh 2014-01-25 16:11:30 UTC (rev 7509) @@ -0,0 +1,196 @@ +#!/bin/bash + +site=$1 +script=$2 +logfile=$3 + +ln -s $script script.swift +swift=$(which swift) +# use "here" document for configs +case "$site" in +midway ) +cat << 'EOF' > /tmp/sites.xml + + + + sandyb + 16 + 02:00:00 + 7500 + 100 + 100 + 2 + 1 + 1 + .31 + 10000 + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +midway echo echo +midway cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +uc3 ) +cat << 'EOF' > /tmp/sites.xml + + + + + .09 + 1000 + 1 + 3600 + 1 + 100 + 100 + 1 + UidDomain == "osg-gk.mwt2.org" + 1 + "group_friends.{env.USER}" + nonshared + + + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +uc3 echo /bin/echo +uc3 cat /bin/cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +stampede ) +cat << 'EOF' > /tmp/sites.xml + + + + + + + 16 + 16 + TG-STA110005S + normal + ketancmaheshwari at gmail.com + ALL + 02:00:00 + 8000 + 100 + 100 + 1 + 1 + 1 + .15 + 10000 + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +stampede echo echo +stampede cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +localhost ) +cat << 'EOF' > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +* ) +echo "defaulting to localhost" +cat << 'EOF' > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; +esac + +$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf script.swift 2> $logfile +EXITCODE=$? + +if [ "$EXITCODE" -ne "0" ]; then + cat std.err >&2 +fi +#cp std.err $logfile +#rm std.err +exit $EXITCODE Deleted: SwiftApps/swift-galaxy/swift/swift.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swift.xml 2014-01-24 21:53:49 UTC (rev 7508) +++ SwiftApps/swift-galaxy/swift/swift.xml 2014-01-25 16:11:30 UTC (rev 7509) @@ -1,40 +0,0 @@ - - A generic Swift tool to run Swift workflows - - - swift-galaxy $site $script $log_file - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - From ketan at ci.uchicago.edu Sat Jan 25 10:21:43 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Sat, 25 Jan 2014 10:21:43 -0600 (CST) Subject: [Swift-commit] r7510 - SwiftApps/swift-galaxy/swift Message-ID: <20140125162143.9501A9CFBF@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-25 10:21:43 -0600 (Sat, 25 Jan 2014) New Revision: 7510 Added: SwiftApps/swift-galaxy/swift/genericswift.sh Removed: SwiftApps/swift-galaxy/swift/swift-galaxy.sh Modified: SwiftApps/swift-galaxy/swift/genericswift.xml Log: rename Copied: SwiftApps/swift-galaxy/swift/genericswift.sh (from rev 7509, SwiftApps/swift-galaxy/swift/swift-galaxy.sh) =================================================================== --- SwiftApps/swift-galaxy/swift/genericswift.sh (rev 0) +++ SwiftApps/swift-galaxy/swift/genericswift.sh 2014-01-25 16:21:43 UTC (rev 7510) @@ -0,0 +1,196 @@ +#!/bin/bash + +site=$1 +script=$2 +logfile=$3 + +ln -s $script script.swift +swift=$(which swift) +# use "here" document for configs +case "$site" in +midway ) +cat << 'EOF' > /tmp/sites.xml + + + + sandyb + 16 + 02:00:00 + 7500 + 100 + 100 + 2 + 1 + 1 + .31 + 10000 + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +midway echo echo +midway cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +uc3 ) +cat << 'EOF' > /tmp/sites.xml + + + + + .09 + 1000 + 1 + 3600 + 1 + 100 + 100 + 1 + UidDomain == "osg-gk.mwt2.org" + 1 + "group_friends.{env.USER}" + nonshared + + + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +uc3 echo /bin/echo +uc3 cat /bin/cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +stampede ) +cat << 'EOF' > /tmp/sites.xml + + + + + + + 16 + 16 + TG-STA110005S + normal + ketancmaheshwari at gmail.com + ALL + 02:00:00 + 8000 + 100 + 100 + 1 + 1 + 1 + .15 + 10000 + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +stampede echo echo +stampede cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +localhost ) +cat << 'EOF' > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +* ) +echo "defaulting to localhost" +cat << 'EOF' > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; +esac + +$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf script.swift 2> $logfile +EXITCODE=$? + +if [ "$EXITCODE" -ne "0" ]; then + cat std.err >&2 +fi +#cp std.err $logfile +#rm std.err +exit $EXITCODE Modified: SwiftApps/swift-galaxy/swift/genericswift.xml =================================================================== --- SwiftApps/swift-galaxy/swift/genericswift.xml 2014-01-25 16:11:30 UTC (rev 7509) +++ SwiftApps/swift-galaxy/swift/genericswift.xml 2014-01-25 16:21:43 UTC (rev 7510) @@ -2,7 +2,7 @@ A generic Swift tool to run Swift workflows - swift-galaxy.sh + genericswift.sh $site $script $log_file Deleted: SwiftApps/swift-galaxy/swift/swift-galaxy.sh =================================================================== --- SwiftApps/swift-galaxy/swift/swift-galaxy.sh 2014-01-25 16:11:30 UTC (rev 7509) +++ SwiftApps/swift-galaxy/swift/swift-galaxy.sh 2014-01-25 16:21:43 UTC (rev 7510) @@ -1,196 +0,0 @@ -#!/bin/bash - -site=$1 -script=$2 -logfile=$3 - -ln -s $script script.swift -swift=$(which swift) -# use "here" document for configs -case "$site" in -midway ) -cat << 'EOF' > /tmp/sites.xml - - - - sandyb - 16 - 02:00:00 - 7500 - 100 - 100 - 2 - 1 - 1 - .31 - 10000 - /tmp/swift.work - - -EOF - -cat << 'EOF' > /tmp/tc -midway echo echo -midway cat cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=true -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; - -uc3 ) -cat << 'EOF' > /tmp/sites.xml - - - - - .09 - 1000 - 1 - 3600 - 1 - 100 - 100 - 1 - UidDomain == "osg-gk.mwt2.org" - 1 - "group_friends.{env.USER}" - nonshared - - - /tmp/swift.work - - -EOF - -cat << 'EOF' > /tmp/tc -uc3 echo /bin/echo -uc3 cat /bin/cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=true -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; - -stampede ) -cat << 'EOF' > /tmp/sites.xml - - - - - - - 16 - 16 - TG-STA110005S - normal - ketancmaheshwari at gmail.com - ALL - 02:00:00 - 8000 - 100 - 100 - 1 - 1 - 1 - .15 - 10000 - /tmp/swift.work - - -EOF - -cat << 'EOF' > /tmp/tc -stampede echo echo -stampede cat cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=true -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; - -localhost ) -cat << 'EOF' > /tmp/sites.xml - - - - - - /tmp/swift.work - 0.31 - - -EOF - -cat << 'EOF' > /tmp/tc -localhost echo echo -localhost cat cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=false -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; - -* ) -echo "defaulting to localhost" -cat << 'EOF' > /tmp/sites.xml - - - - - - /tmp/swift.work - 0.31 - - -EOF - -cat << 'EOF' > /tmp/tc -localhost echo echo -localhost cat cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=false -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; -esac - -$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf script.swift 2> $logfile -EXITCODE=$? - -if [ "$EXITCODE" -ne "0" ]; then - cat std.err >&2 -fi -#cp std.err $logfile -#rm std.err -exit $EXITCODE From ketan at ci.uchicago.edu Sat Jan 25 19:07:41 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Sat, 25 Jan 2014 19:07:41 -0600 (CST) Subject: [Swift-commit] r7511 - in SwiftApps/gocat: . log Message-ID: <20140126010741.794979CFBF@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-25 19:07:41 -0600 (Sat, 25 Jan 2014) New Revision: 7511 Added: SwiftApps/gocat/README Modified: SwiftApps/gocat/log/GlobusCatalog-log.txt SwiftApps/gocat/tagwrap.sh Log: adding readme and small fixes Added: SwiftApps/gocat/README =================================================================== --- SwiftApps/gocat/README (rev 0) +++ SwiftApps/gocat/README 2014-01-26 01:07:41 UTC (rev 7511) @@ -0,0 +1,38 @@ +==Required== + +1. Install CLI of GO Catalog following instructions from here: https://docs.google.com/document/d/1cR8vcX1UTWKIsG3JSeQQ0tEmSDCeNRitXQ7ZuYwtqT0/edit + +Briefly, do the following: + +1. Install Globus Catalog client: + + git clone https://github.com/globusonline/catalog-client + cd catalog-client + python setup.py install --user + +2. Install Globus Transfer API: + + git clone https://github.com/globusonline/transfer-api-client-python + cd transfer-api-client-python + python setup.py install --user + +3. Make sure you have an account on GO catalog. For testing, you may use the following username/password: + ketancmaheshwari/test123 + +4. Test the installation as follows: + cd catalog-client/globusonline/catalog/client/examples + sh test_command_line.sh + +You'll be prompted to enter your username and password for first time. GO remembers it. + +To get started with catalog wrapper tagwrap.sh set the following environment variables: + +1. catloc +2. catid + +For example on my mac OSX: + +export catloc=/Users/ketan/catalog-client/globusonline/catalog/client/examples +export catid=48 + +catid is the catalog id and will be different depending upon which catalog you are working with. Modified: SwiftApps/gocat/log/GlobusCatalog-log.txt =================================================================== --- SwiftApps/gocat/log/GlobusCatalog-log.txt 2014-01-25 16:21:43 UTC (rev 7510) +++ SwiftApps/gocat/log/GlobusCatalog-log.txt 2014-01-26 01:07:41 UTC (rev 7511) @@ -97,3 +97,46 @@ python /scratch/local/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_dataset 48 {"name":"cofeemug"} python /scratch/local/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_annotation_def 48 make text python /scratch/local/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py add_dataset_annotation 48 92 {"make":"target"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py -text query_datasets 48 name EQUAL cofeemug +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_dataset 48 {"name":"cofeemug"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py add_dataset_annotation 48 105 {"color":"white"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py -text query_datasets 48 name EQUAL cofeemug +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_dataset 48 {"name":"cofeemug"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py add_dataset_annotation 48 106 {"size":"16oz"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py -text query_datasets 48 name EQUAL cofeemug +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_dataset 48 {"name":"cofeemug"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py add_dataset_annotation 48 107 {"material":"clay"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py -text query_datasets 48 name EQUAL cofeejug +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_dataset 48 {"name":"cofeejug"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py add_dataset_annotation 48 108 {"color":"white"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py -text query_datasets 48 name EQUAL cofeejug +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_dataset 48 {"name":"cofeejug"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py add_dataset_annotation 48 109 {"size":"16oz"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py -text query_datasets 48 name EQUAL cofeejug +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_dataset 48 {"name":"cofeejug"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py add_dataset_annotation 48 110 {"material":"clay"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py -text query_datasets 48 name EQUAL cofeejug +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_dataset 48 {"name":"cofeejug"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_annotation_def 48 attrx text +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py add_dataset_annotation 48 111 {"attrx":"white"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py -text query_datasets 48 name EQUAL cofeejug +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_dataset 48 {"name":"cofeejug"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_annotation_def 48 attry text +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py add_dataset_annotation 48 113 {"attry":"16oz"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py -text query_datasets 48 name EQUAL cofeejug +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_dataset 48 {"name":"cofeejug"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_annotation_def 48 attrz text +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py add_dataset_annotation 48 115 {"attrz":"clay"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py -text query_datasets 48 name EQUAL cofeejug +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_dataset 48 {"name":"cofeejug"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py add_dataset_annotation 48 117 {"attrx":"white"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py -text query_datasets 48 name EQUAL cofeejug +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_dataset 48 {"name":"cofeejug"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py add_dataset_annotation 48 118 {"attry":"16oz"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py -text query_datasets 48 name EQUAL cofeejug +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_dataset 48 {"name":"cofeejug"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py add_dataset_annotation 48 119 {"attrz":"clay"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py -text query_datasets 48 name EQUAL cofeejug +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_dataset 48 {"name":"cofeejug"} +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py create_annotation_def 48 at text +python /Users/ketan/catalog-client/globusonline/catalog/client/examples/catalog.py add_dataset_annotation 48 120 {"at":"white"} Modified: SwiftApps/gocat/tagwrap.sh =================================================================== --- SwiftApps/gocat/tagwrap.sh 2014-01-25 16:21:43 UTC (rev 7510) +++ SwiftApps/gocat/tagwrap.sh 2014-01-26 01:07:41 UTC (rev 7511) @@ -3,13 +3,13 @@ # Usage: $0 = #e.g. sh tagwrap.sh cofeemug color=white size=16oz material=clay # Required: Env variable catloc pointing to the directory containing catalog.py -if [ $# -le 2 ] + +if [ $# -le 1 ] then echo "Usage: $0 = = ..." exit 1 fi -catid=48 dsetname=$1 shift From ketan at ci.uchicago.edu Sat Jan 25 19:32:27 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Sat, 25 Jan 2014 19:32:27 -0600 (CST) Subject: [Swift-commit] r7512 - SwiftApps/gocat Message-ID: <20140126013227.905C49CFBF@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-25 19:32:26 -0600 (Sat, 25 Jan 2014) New Revision: 7512 Modified: SwiftApps/gocat/README Log: adding an example Modified: SwiftApps/gocat/README =================================================================== --- SwiftApps/gocat/README 2014-01-26 01:07:41 UTC (rev 7511) +++ SwiftApps/gocat/README 2014-01-26 01:32:26 UTC (rev 7512) @@ -36,3 +36,9 @@ export catid=48 catid is the catalog id and will be different depending upon which catalog you are working with. + +The tagwrap.sh is a thin wrapper over catalog.py that takes as argument the +name of a dataset and one or more tag-value pairs as follows: + +sh tagwrap.sh mydataset mytag1=myval1 mytag2=myval2 mytag3=myval3 + From ketan at ci.uchicago.edu Sat Jan 25 20:30:32 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Sat, 25 Jan 2014 20:30:32 -0600 (CST) Subject: [Swift-commit] r7513 - in SwiftApps/swift-galaxy: . swift Message-ID: <20140126023032.66DC49CFB2@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-25 20:30:32 -0600 (Sat, 25 Jan 2014) New Revision: 7513 Added: SwiftApps/swift-galaxy/README.txt Removed: SwiftApps/swift-galaxy/README Modified: SwiftApps/swift-galaxy/swift/genericswift.xml Log: new README Deleted: SwiftApps/swift-galaxy/README =================================================================== --- SwiftApps/swift-galaxy/README 2014-01-26 01:32:26 UTC (rev 7512) +++ SwiftApps/swift-galaxy/README 2014-01-26 02:30:32 UTC (rev 7513) @@ -1,7 +0,0 @@ -=How to install this into Galaxy= - -=Notes= - -1. Untar Illinois.tgz before running powergrid application -2. The csvs in the lungsearch application are not complete, they contain just the first 50 lines - Added: SwiftApps/swift-galaxy/README.txt =================================================================== --- SwiftApps/swift-galaxy/README.txt (rev 0) +++ SwiftApps/swift-galaxy/README.txt 2014-01-26 02:30:32 UTC (rev 7513) @@ -0,0 +1,51 @@ +=How to install this into Galaxy= + +=Notes= + +1. Untar Illinois.tgz before running powergrid application +2. The csvs in the lungsearch application are not complete, they contain just the first 50 lines + +==An example== + +A simple Hello World Swift tool to run with Galaxy. + +To set up with your Galaxy environment follow the steps below: +0. Prerequisite: Sun/Oracle java. Should work with IBM java but not tested rigorously. + +1. Download and install Swift where Galaxy server is running. From a command prompt the following wget will pull the latest release: + +wget http://www.ci.uchicago.edu/swift/packages/swift-0.94.1.tar.gz + +Do untar at a suitable location: + +tar zxf swift-0.94.1.tar.gz + +Put the bin dir on system PATH: + +export PATH=$PATH:/location/to/swift-0.94.1/bin + +Edit above line to match the location of Swift and add it to your environment file (.bashrc, .bash_profile or the corresponding ones for other shells). + +Make sure Swift is available from a command prompt: + +which swift +swift -version + +2. untar and copy the swift-galaxy.tgz to the tools directory of your Galaxy location: + +tar zxf swift-galaxy.tgz + +cp -r swift-galaxy /location/of/galaxy-server/tools/ + +3. Edit the tool_conf.xml file present at the top-level of galaxy-server directory tree to add the following lines between the and xml tags: + +
+ +
+ +4. Restart the Galaxy server. The swift-galaxy tool should be available in the tool box of Galaxy GUI. + +5. Invoke it by entering any number in the dialog box or leaving it to default. A message "Hello World!" will be written to output files as many times and the files should be available for browsing from Galaxy GUI. + +Please note that the Cluster option is not implemented in this example. + Modified: SwiftApps/swift-galaxy/swift/genericswift.xml =================================================================== --- SwiftApps/swift-galaxy/swift/genericswift.xml 2014-01-26 01:32:26 UTC (rev 7512) +++ SwiftApps/swift-galaxy/swift/genericswift.xml 2014-01-26 02:30:32 UTC (rev 7513) @@ -1,11 +1,29 @@ - + A generic Swift tool to run Swift workflows - genericswift.sh - $site - $script - $log_file + #if $configuration.mode == "default" + genericswift.sh + $site + $script + $log_file + #else + genericswift.sh + $site + $script + $log_file + $remoteurl + $throttle + $project + $slots + $queue + $nodes + $nodegranularity + $jobspernode + $ppn + $walltime + $maxtime + #end if @@ -24,6 +42,7 @@ + @@ -40,4 +59,22 @@ + +.. class:: warningmark + +**TIP**. The data referenced in your Swift script must be absolute path. + +----- + +**What it does** + +This is a generic Swift tool. The tool allows you to select an arbritrary Swift script and run it on the resource of your choice. Currently supported resources are Midway, UC3, Stampede and localhost. + +----- + +**Example** + +Upload a Swift script via get data tools to bring it in history. The tool then will identify Swift scripts and will populate them. Select the resource from the "Execution Location" dropdown. + + From ketan at ci.uchicago.edu Sat Jan 25 20:44:01 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Sat, 25 Jan 2014 20:44:01 -0600 (CST) Subject: [Swift-commit] r7514 - SwiftApps/swift-galaxy/swift Message-ID: <20140126024401.4D2999CFB2@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-25 20:44:01 -0600 (Sat, 25 Jan 2014) New Revision: 7514 Modified: SwiftApps/swift-galaxy/swift/genericswift.xml Log: remove swift install directory, install on the fly Modified: SwiftApps/swift-galaxy/swift/genericswift.xml =================================================================== --- SwiftApps/swift-galaxy/swift/genericswift.xml 2014-01-26 02:30:32 UTC (rev 7513) +++ SwiftApps/swift-galaxy/swift/genericswift.xml 2014-01-26 02:44:01 UTC (rev 7514) @@ -2,7 +2,7 @@ A generic Swift tool to run Swift workflows - #if $configuration.mode == "default" + #if $configuration.mode == "default" genericswift.sh $site $script From ketan at ci.uchicago.edu Sat Jan 25 22:46:44 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Sat, 25 Jan 2014 22:46:44 -0600 (CST) Subject: [Swift-commit] r7515 - SwiftApps/swift-galaxy/swift Message-ID: <20140126044644.26D2E9CFB2@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-25 22:46:44 -0600 (Sat, 25 Jan 2014) New Revision: 7515 Added: SwiftApps/swift-galaxy/swift/swiftforeach.sh SwiftApps/swift-galaxy/swift/swiftforeach.xml Modified: SwiftApps/swift-galaxy/swift/genericswift.sh SwiftApps/swift-galaxy/swift/genericswift.xml Log: first version of a generic swift foreach for Galaxy Modified: SwiftApps/swift-galaxy/swift/genericswift.sh =================================================================== --- SwiftApps/swift-galaxy/swift/genericswift.sh 2014-01-26 02:44:01 UTC (rev 7514) +++ SwiftApps/swift-galaxy/swift/genericswift.sh 2014-01-26 04:46:44 UTC (rev 7515) @@ -1,9 +1,34 @@ #!/bin/bash site=$1 -script=$2 -logfile=$3 +shift +script=$1 +shift +logfile=$1 +shift +remoteurl=$1 +shift +throttle=$1 +shift +project=$1 +shift +slots=$1 +shift +queue=$1 +shift +nodes=$1 +shift +nodegranularity=$1 +shift +jobspernode=$1 +shift +ppn=$1 +shift +walltime=$1 +shift +maxtime=$1 + ln -s $script script.swift swift=$(which swift) # use "here" document for configs Modified: SwiftApps/swift-galaxy/swift/genericswift.xml =================================================================== --- SwiftApps/swift-galaxy/swift/genericswift.xml 2014-01-26 02:44:01 UTC (rev 7514) +++ SwiftApps/swift-galaxy/swift/genericswift.xml 2014-01-26 04:46:44 UTC (rev 7515) @@ -28,9 +28,9 @@ + - Added: SwiftApps/swift-galaxy/swift/swiftforeach.sh =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeach.sh (rev 0) +++ SwiftApps/swift-galaxy/swift/swiftforeach.sh 2014-01-26 04:46:44 UTC (rev 7515) @@ -0,0 +1,243 @@ +#!/bin/bash + +if [ $# -gt 2 ] +then + # numeric range + executable = $1 + shift + rstart = $1 + shift + rend = $1 + shift + stepsize = $1 + + cat << EOF > /tmp/script.swift + type file; + + (file _out, file _err) app anapp(file _anarg){ + anapp @_anarg stdout=@_out stderr=@_err; + } + + file out[]; + file err[]; + file anarg = <"somefile">; + foreach i in [$rstart:$rend:$stepsize]{ + (out[i],err[i]) = anapp(anarg); + } +EOF + +else + # readData + executable = $1 + shift + raft = $1 + + cat << EOF > /tmp/script.swift + type file; + + (file _out, file _err) app anapp(file _anarg){ + anapp @_anarg stdout=@_out stderr=@_err; + } + + file out[]; + file err[]; + file raft<"$raft">; + file anarg = <"somefile">; + string arglist=readData(raft); + + foreach i in arglist{ + (out[i],err[i]) = anapp(anarg); + } +EOF + +fi + +swift=$(which swift) +# use "here" document for configs +case "$site" in +midway ) +cat << 'EOF' > /tmp/sites.xml + + + + sandyb + 16 + 02:00:00 + 7500 + 100 + 100 + 2 + 1 + 1 + .31 + 10000 + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +midway echo echo +midway cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +uc3 ) +cat << 'EOF' > /tmp/sites.xml + + + + + .09 + 1000 + 1 + 3600 + 1 + 100 + 100 + 1 + UidDomain == "osg-gk.mwt2.org" + 1 + "group_friends.{env.USER}" + nonshared + + + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +uc3 echo /bin/echo +uc3 cat /bin/cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +stampede ) +cat << 'EOF' > /tmp/sites.xml + + + + + + + 16 + 16 + TG-STA110005S + normal + ketancmaheshwari at gmail.com + ALL + 02:00:00 + 8000 + 100 + 100 + 1 + 1 + 1 + .15 + 10000 + /tmp/swift.work + + +EOF + +cat << 'EOF' > /tmp/tc +stampede echo echo +stampede cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +localhost ) +cat << 'EOF' > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; + +* ) +echo "defaulting to localhost" +cat << 'EOF' > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +EOF + +cat << 'EOF' > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF +;; +esac + +$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/script.swift 2> $logfile +EXITCODE=$? + +if [ "$EXITCODE" -ne "0" ]; then + cat std.err >&2 +fi +#cp std.err $logfile +#rm std.err +exit $EXITCODE Property changes on: SwiftApps/swift-galaxy/swift/swiftforeach.sh ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/swiftforeach.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeach.xml (rev 0) +++ SwiftApps/swift-galaxy/swift/swiftforeach.xml 2014-01-26 04:46:44 UTC (rev 7515) @@ -0,0 +1,80 @@ + + A generic Swift tool to run Swift workflows + + + #if $configuration.mode == "default" + genericswift.sh + $site + $script + $log_file + #else + genericswift.sh + $site + $script + $log_file + $remoteurl + $throttle + $project + $slots + $queue + $nodes + $nodegranularity + $jobspernode + $ppn + $walltime + $maxtime + #end if + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +.. class:: warningmark + +**TIP**. The data referenced in your Swift script must be absolute path. + +----- + +**What it does** + +This is a generic Swift tool. The tool allows you to select an arbritrary Swift script and run it on the resource of your choice. Currently supported resources are Midway, UC3, Stampede and localhost. + +----- + +**Example** + +Upload a Swift script via get data tools to bring it in history. The tool then will identify Swift scripts and will populate them. Select the resource from the "Execution Location" dropdown. + + + From ketan at ci.uchicago.edu Sat Jan 25 23:29:34 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Sat, 25 Jan 2014 23:29:34 -0600 (CST) Subject: [Swift-commit] r7516 - SwiftApps/gocat Message-ID: <20140126052934.7FA099CFBF@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-25 23:29:34 -0600 (Sat, 25 Jan 2014) New Revision: 7516 Modified: SwiftApps/gocat/README Log: notes Modified: SwiftApps/gocat/README =================================================================== --- SwiftApps/gocat/README 2014-01-26 04:46:44 UTC (rev 7515) +++ SwiftApps/gocat/README 2014-01-26 05:29:34 UTC (rev 7516) @@ -23,7 +23,7 @@ cd catalog-client/globusonline/catalog/client/examples sh test_command_line.sh -You'll be prompted to enter your username and password for first time. GO remembers it. +You will be prompted to enter your username and password for first time. GO remembers it from there. To get started with catalog wrapper tagwrap.sh set the following environment variables: @@ -32,7 +32,7 @@ For example on my mac OSX: -export catloc=/Users/ketan/catalog-client/globusonline/catalog/client/examples +export catloc=$HOME/catalog-client/globusonline/catalog/client/examples export catid=48 catid is the catalog id and will be different depending upon which catalog you are working with. @@ -42,3 +42,6 @@ sh tagwrap.sh mydataset mytag1=myval1 mytag2=myval2 mytag3=myval3 +Note: For further tests, note that the tag values must be unique and change +each time you are tagging a dataset. This might be considered a limitation +depending on applications requirements. From ketan at ci.uchicago.edu Sun Jan 26 17:26:20 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Sun, 26 Jan 2014 17:26:20 -0600 (CST) Subject: [Swift-commit] r7517 - SwiftApps/swift-galaxy/swift Message-ID: <20140126232620.379A79D943@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-26 17:26:19 -0600 (Sun, 26 Jan 2014) New Revision: 7517 Added: SwiftApps/swift-galaxy/swift/swiftforeachrange.sh SwiftApps/swift-galaxy/swift/swiftforeachrange.xml Removed: SwiftApps/swift-galaxy/swift/swiftforeach.sh SwiftApps/swift-galaxy/swift/swiftforeach.xml Log: swift for each for Galaxy, version numrange Deleted: SwiftApps/swift-galaxy/swift/swiftforeach.sh =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeach.sh 2014-01-26 05:29:34 UTC (rev 7516) +++ SwiftApps/swift-galaxy/swift/swiftforeach.sh 2014-01-26 23:26:19 UTC (rev 7517) @@ -1,243 +0,0 @@ -#!/bin/bash - -if [ $# -gt 2 ] -then - # numeric range - executable = $1 - shift - rstart = $1 - shift - rend = $1 - shift - stepsize = $1 - - cat << EOF > /tmp/script.swift - type file; - - (file _out, file _err) app anapp(file _anarg){ - anapp @_anarg stdout=@_out stderr=@_err; - } - - file out[]; - file err[]; - file anarg = <"somefile">; - foreach i in [$rstart:$rend:$stepsize]{ - (out[i],err[i]) = anapp(anarg); - } -EOF - -else - # readData - executable = $1 - shift - raft = $1 - - cat << EOF > /tmp/script.swift - type file; - - (file _out, file _err) app anapp(file _anarg){ - anapp @_anarg stdout=@_out stderr=@_err; - } - - file out[]; - file err[]; - file raft<"$raft">; - file anarg = <"somefile">; - string arglist=readData(raft); - - foreach i in arglist{ - (out[i],err[i]) = anapp(anarg); - } -EOF - -fi - -swift=$(which swift) -# use "here" document for configs -case "$site" in -midway ) -cat << 'EOF' > /tmp/sites.xml - - - - sandyb - 16 - 02:00:00 - 7500 - 100 - 100 - 2 - 1 - 1 - .31 - 10000 - /tmp/swift.work - - -EOF - -cat << 'EOF' > /tmp/tc -midway echo echo -midway cat cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=true -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; - -uc3 ) -cat << 'EOF' > /tmp/sites.xml - - - - - .09 - 1000 - 1 - 3600 - 1 - 100 - 100 - 1 - UidDomain == "osg-gk.mwt2.org" - 1 - "group_friends.{env.USER}" - nonshared - - - /tmp/swift.work - - -EOF - -cat << 'EOF' > /tmp/tc -uc3 echo /bin/echo -uc3 cat /bin/cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=true -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; - -stampede ) -cat << 'EOF' > /tmp/sites.xml - - - - - - - 16 - 16 - TG-STA110005S - normal - ketancmaheshwari at gmail.com - ALL - 02:00:00 - 8000 - 100 - 100 - 1 - 1 - 1 - .15 - 10000 - /tmp/swift.work - - -EOF - -cat << 'EOF' > /tmp/tc -stampede echo echo -stampede cat cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=true -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; - -localhost ) -cat << 'EOF' > /tmp/sites.xml - - - - - - /tmp/swift.work - 0.31 - - -EOF - -cat << 'EOF' > /tmp/tc -localhost echo echo -localhost cat cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=false -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; - -* ) -echo "defaulting to localhost" -cat << 'EOF' > /tmp/sites.xml - - - - - - /tmp/swift.work - 0.31 - - -EOF - -cat << 'EOF' > /tmp/tc -localhost echo echo -localhost cat cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=false -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; -esac - -$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/script.swift 2> $logfile -EXITCODE=$? - -if [ "$EXITCODE" -ne "0" ]; then - cat std.err >&2 -fi -#cp std.err $logfile -#rm std.err -exit $EXITCODE Deleted: SwiftApps/swift-galaxy/swift/swiftforeach.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeach.xml 2014-01-26 05:29:34 UTC (rev 7516) +++ SwiftApps/swift-galaxy/swift/swiftforeach.xml 2014-01-26 23:26:19 UTC (rev 7517) @@ -1,80 +0,0 @@ - - A generic Swift tool to run Swift workflows - - - #if $configuration.mode == "default" - genericswift.sh - $site - $script - $log_file - #else - genericswift.sh - $site - $script - $log_file - $remoteurl - $throttle - $project - $slots - $queue - $nodes - $nodegranularity - $jobspernode - $ppn - $walltime - $maxtime - #end if - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -.. class:: warningmark - -**TIP**. The data referenced in your Swift script must be absolute path. - ------ - -**What it does** - -This is a generic Swift tool. The tool allows you to select an arbritrary Swift script and run it on the resource of your choice. Currently supported resources are Midway, UC3, Stampede and localhost. - ------ - -**Example** - -Upload a Swift script via get data tools to bring it in history. The tool then will identify Swift scripts and will populate them. Select the resource from the "Execution Location" dropdown. - - - Copied: SwiftApps/swift-galaxy/swift/swiftforeachrange.sh (from rev 7515, SwiftApps/swift-galaxy/swift/swiftforeach.sh) =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrange.sh (rev 0) +++ SwiftApps/swift-galaxy/swift/swiftforeachrange.sh 2014-01-26 23:26:19 UTC (rev 7517) @@ -0,0 +1,189 @@ +#!/bin/bash + +# numeric range +site = $1 +shift +executable = $1 +shift +rstart = $1 +shift +rend = $1 +shift +stepsize = $1 +shift +logfile = $1 + +cat << EOF > /tmp/script.swift +type file; + +(file _out, file _err) app anapp(){ + anapp stdout=@_out stderr=@_err; +} + +file out[]; +file err[]; +foreach i in [$rstart:$rend:$stepsize]{ + (out[i],err[i]) = anapp(); +} +EOF + +swift=$(which swift) + +# use "here" document for configs +case "$site" in +midway ) +cat << EOF > /tmp/sites.xml + + + + sandyb + 16 + 02:00:00 + 7500 + 100 + 100 + 2 + 1 + 1 + .31 + 10000 + + /tmp/swift.work + + +EOF + +cat << EOF > /tmp/tc +midway echo echo +midway anapp $executable +midway cat cat +EOF + +;; + +uc3 ) +cat << EOF > /tmp/sites.xml + + + + + .09 + 1000 + 1 + 3600 + 1 + 100 + 100 + 1 + UidDomain == "osg-gk.mwt2.org" + 1 + "group_friends.{env.USER}" + nonshared + + + /tmp/swift.work + + +EOF + +cat << EOF > /tmp/tc +uc3 anapp $executable +uc3 echo /bin/echo +uc3 cat /bin/cat +EOF + +;; + +stampede ) +cat << EOF > /tmp/sites.xml + + + + + 16 + 16 + TG-STA110005S + normal + ketancmaheshwari at gmail.com + ALL + 02:00:00 + 8000 + 100 + 100 + 1 + 1 + 1 + .15 + 10000 + /tmp/swift.work + + +EOF + +cat << EOF > /tmp/tc +stampede anapp $executable +stampede echo echo +stampede cat cat +EOF + +;; + +localhost ) +cat << EOF > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << EOF > /tmp/tc +localhost anapp $executable +localhost echo echo +localhost cat cat +EOF +;; + +* ) +echo "defaulting to localhost" +cat << EOF > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << EOF > /tmp/tc +localhost anapp $executable +localhost echo echo +localhost cat cat +EOF + +;; +esac + +cat << EOF > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=0 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF + +$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/script.swift 2> $logfile +EXITCODE=$? + +if [ "$EXITCODE" -ne "0" ]; then + cat std.err >&2 +fi +exit $EXITCODE Copied: SwiftApps/swift-galaxy/swift/swiftforeachrange.xml (from rev 7515, SwiftApps/swift-galaxy/swift/swiftforeach.xml) =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrange.xml (rev 0) +++ SwiftApps/swift-galaxy/swift/swiftforeachrange.xml 2014-01-26 23:26:19 UTC (rev 7517) @@ -0,0 +1,92 @@ + + A generic tool to run executable via Swift foreach parallel construct + + + #if $configuration.mode == "default" + swiftforeachrange.sh + $site + $executable + $rstart + $rend + $stepsize + $log_file + #else + swiftforeachrange.sh + $site + $executable + $rstart + $rend + $stepsize + $log_file + $remoteurl + $throttle + $project + $slots + $queue + $nodes + $nodegranularity + $jobspernode + $ppn + $walltime + $maxtime + #end if + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +.. class:: warningmark + +**TIP**. A generic Swift foreach to run arbitrary executables in parallel over a range of numbers. + +----- + +**What it does** + +This is a generic Swift tool. + +----- + +**Example** + +ToDo + + From ketan at ci.uchicago.edu Sun Jan 26 19:43:26 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Sun, 26 Jan 2014 19:43:26 -0600 (CST) Subject: [Swift-commit] r7518 - SwiftApps/swift-galaxy/swift Message-ID: <20140127014326.059DA9CFBF@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-26 19:43:25 -0600 (Sun, 26 Jan 2014) New Revision: 7518 Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.sh SwiftApps/swift-galaxy/swift/swiftforeachrange.xml Log: working swift foreach Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.sh =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrange.sh 2014-01-26 23:26:19 UTC (rev 7517) +++ SwiftApps/swift-galaxy/swift/swiftforeachrange.sh 2014-01-27 01:43:25 UTC (rev 7518) @@ -1,29 +1,31 @@ #!/bin/bash +echo $@ > /tmp/args.txt # numeric range -site = $1 +site=$1 shift -executable = $1 +executable=$1 shift -rstart = $1 +rstart=$1 shift -rend = $1 +rend=$1 shift -stepsize = $1 +stepsize=$1 shift -logfile = $1 +logfile=$1 cat << EOF > /tmp/script.swift type file; -(file _out, file _err) app anapp(){ - anapp stdout=@_out stderr=@_err; +app (file _out, file _err) anapp(file _exec){ + sh @_exec stdout=@_out stderr=@_err; } file out[]; file err[]; +file exec<"$executable">; foreach i in [$rstart:$rend:$stepsize]{ - (out[i],err[i]) = anapp(); + (out[i],err[i]) = anapp(exec); } EOF @@ -55,7 +57,7 @@ cat << EOF > /tmp/tc midway echo echo -midway anapp $executable +midway sh /bin/sh midway cat cat EOF @@ -87,7 +89,7 @@ EOF cat << EOF > /tmp/tc -uc3 anapp $executable +uc3 sh /bin/sh uc3 echo /bin/echo uc3 cat /bin/cat EOF @@ -121,7 +123,7 @@ EOF cat << EOF > /tmp/tc -stampede anapp $executable +stampede sh /bin/sh stampede echo echo stampede cat cat EOF @@ -142,7 +144,7 @@ EOF cat << EOF > /tmp/tc -localhost anapp $executable +localhost sh /bin/sh localhost echo echo localhost cat cat EOF @@ -163,7 +165,7 @@ EOF cat << EOF > /tmp/tc -localhost anapp $executable +localhost sh /bin/sh localhost echo echo localhost cat cat EOF @@ -180,10 +182,10 @@ lazy.errors=false EOF -$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/script.swift 2> $logfile +$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/script.swift 2>$logfile EXITCODE=$? if [ "$EXITCODE" -ne "0" ]; then - cat std.err >&2 + cat $logfile >&2 fi exit $EXITCODE Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrange.xml 2014-01-26 23:26:19 UTC (rev 7517) +++ SwiftApps/swift-galaxy/swift/swiftforeachrange.xml 2014-01-27 01:43:25 UTC (rev 7518) @@ -2,7 +2,6 @@ A generic tool to run executable via Swift foreach parallel construct - #if $configuration.mode == "default" swiftforeachrange.sh $site $executable @@ -10,26 +9,6 @@ $rend $stepsize $log_file - #else - swiftforeachrange.sh - $site - $executable - $rstart - $rend - $stepsize - $log_file - $remoteurl - $throttle - $project - $slots - $queue - $nodes - $nodegranularity - $jobspernode - $ppn - $walltime - $maxtime - #end if @@ -42,9 +21,9 @@ - - - + + + From ketan at ci.uchicago.edu Mon Jan 27 12:03:44 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Mon, 27 Jan 2014 12:03:44 -0600 (CST) Subject: [Swift-commit] r7519 - in SwiftApps/swift-galaxy/swift: . test_exec Message-ID: <20140127180344.97E369CFE5@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-27 12:03:43 -0600 (Mon, 27 Jan 2014) New Revision: 7519 Added: SwiftApps/swift-galaxy/swift/swiftforeachlist.sh SwiftApps/swift-galaxy/swift/swiftforeachlist.xml SwiftApps/swift-galaxy/swift/test_exec/ SwiftApps/swift-galaxy/swift/test_exec/alist.txt SwiftApps/swift-galaxy/swift/test_exec/echo.sh SwiftApps/swift-galaxy/swift/test_exec/ls.sh Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.sh Log: for each list Added: SwiftApps/swift-galaxy/swift/swiftforeachlist.sh =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachlist.sh (rev 0) +++ SwiftApps/swift-galaxy/swift/swiftforeachlist.sh 2014-01-27 18:03:43 UTC (rev 7519) @@ -0,0 +1,196 @@ +#!/bin/bash + +#ToDo: +# +#1. Add arguments, variable number such that user can add and remove them. +#2. Add a way for users to specify expected outputs. +#3. Add a type such that only binaries and executable scripts are populated in the executable list. +# + +echo $@ > /tmp/args.txt +# numeric range +site=$1 +shift +executable=$1 +shift +listfile=$1 +shift +logfile=$1 + +cat << EOF > /tmp/script.swift +type file; + +app (file _out, file _err) anapp(file _exec, string _arg){ + sh @_exec _arg stdout=@_out stderr=@_err; +} + +file out[]; +file err[]; +file exec<"$executable">; +file listfile<"$listfile">; +string list[] = readData(listfile); +foreach l, i in list{ + (out[i],err[i]) = anapp(exec, l); +} +EOF + +swift=$(which swift) + +# use "here" document for configs +case "$site" in +midway ) +cat << EOF > /tmp/sites.xml + + + + sandyb + 16 + 02:00:00 + 7500 + 100 + 100 + 2 + 1 + 1 + .31 + 10000 + + /tmp/swift.work + + +EOF + +cat << EOF > /tmp/tc +midway echo echo +midway sh /bin/sh +midway cat cat +EOF + +;; + +uc3 ) +cat << EOF > /tmp/sites.xml + + + + + .09 + 1000 + 1 + 3600 + 1 + 100 + 100 + 1 + UidDomain == "osg-gk.mwt2.org" + 1 + "group_friends.{env.USER}" + nonshared + + + /tmp/swift.work + + +EOF + +cat << EOF > /tmp/tc +uc3 sh /bin/sh +uc3 echo /bin/echo +uc3 cat /bin/cat +EOF + +;; + +stampede ) +cat << EOF > /tmp/sites.xml + + + + + 16 + 16 + TG-STA110005S + normal + ketancmaheshwari at gmail.com + ALL + 02:00:00 + 8000 + 100 + 100 + 1 + 1 + 1 + .15 + 10000 + /tmp/swift.work + + +EOF + +cat << EOF > /tmp/tc +stampede sh /bin/sh +stampede echo echo +stampede cat cat +EOF + +;; + +localhost ) +cat << EOF > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << EOF > /tmp/tc +localhost sh /bin/sh +localhost echo echo +localhost cat cat +EOF +;; + +* ) +echo "defaulting to localhost" +cat << EOF > /tmp/sites.xml + + + + + + /tmp/swift.work + 0.31 + + +EOF + +cat << EOF > /tmp/tc +localhost sh /bin/sh +localhost echo echo +localhost cat cat +EOF + +;; +esac + +cat << EOF > /tmp/cf +use.provider.staging=false +wrapperlog.always.transfer=true +execution.retries=0 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF + +$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/script.swift 2>$logfile +EXITCODE=$? + +if [ "$EXITCODE" -ne "0" ]; then + cat $logfile >&2 +fi +exit $EXITCODE Property changes on: SwiftApps/swift-galaxy/swift/swiftforeachlist.sh ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/swiftforeachlist.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachlist.xml (rev 0) +++ SwiftApps/swift-galaxy/swift/swiftforeachlist.xml 2014-01-27 18:03:43 UTC (rev 7519) @@ -0,0 +1,65 @@ + + A tool to run executable over an itemlist via Swift foreach parallel construct + + + swiftforeachlist.sh + $site + $executable + $listfile + $log_file + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +.. class:: warningmark + +**TIP**. A generic Swift foreach to run arbitrary executables in parallel over a list of items listed in a file. + +----- + +**What it does** + +This is a Swift tool. + +----- + +**Example** +ToDo + + Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.sh =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrange.sh 2014-01-27 01:43:25 UTC (rev 7518) +++ SwiftApps/swift-galaxy/swift/swiftforeachrange.sh 2014-01-27 18:03:43 UTC (rev 7519) @@ -1,5 +1,12 @@ #!/bin/bash +#ToDo: +# +#1. Add arguments, variable number such that user can add and remove them. +#2. Add a way for users to specify expected outputs. +#3. Add a type such that only binaries and executable scripts are populated in the executable list. +# + echo $@ > /tmp/args.txt # numeric range site=$1 @@ -17,15 +24,15 @@ cat << EOF > /tmp/script.swift type file; -app (file _out, file _err) anapp(file _exec){ - sh @_exec stdout=@_out stderr=@_err; +app (file _out, file _err) anapp(file _exec, int _i){ + sh @_exec _i stdout=@_out stderr=@_err; } file out[]; file err[]; file exec<"$executable">; foreach i in [$rstart:$rend:$stepsize]{ - (out[i],err[i]) = anapp(exec); + (out[i],err[i]) = anapp(exec, i); } EOF Added: SwiftApps/swift-galaxy/swift/test_exec/alist.txt =================================================================== --- SwiftApps/swift-galaxy/swift/test_exec/alist.txt (rev 0) +++ SwiftApps/swift-galaxy/swift/test_exec/alist.txt 2014-01-27 18:03:43 UTC (rev 7519) @@ -0,0 +1,5 @@ +hello +21 +55 +/tmp/args.txt + Added: SwiftApps/swift-galaxy/swift/test_exec/echo.sh =================================================================== --- SwiftApps/swift-galaxy/swift/test_exec/echo.sh (rev 0) +++ SwiftApps/swift-galaxy/swift/test_exec/echo.sh 2014-01-27 18:03:43 UTC (rev 7519) @@ -0,0 +1,4 @@ +#!/bin/bash + +echo $@ + Property changes on: SwiftApps/swift-galaxy/swift/test_exec/echo.sh ___________________________________________________________________ Added: svn:executable + * Added: SwiftApps/swift-galaxy/swift/test_exec/ls.sh =================================================================== --- SwiftApps/swift-galaxy/swift/test_exec/ls.sh (rev 0) +++ SwiftApps/swift-galaxy/swift/test_exec/ls.sh 2014-01-27 18:03:43 UTC (rev 7519) @@ -0,0 +1 @@ +ls Property changes on: SwiftApps/swift-galaxy/swift/test_exec/ls.sh ___________________________________________________________________ Added: svn:executable + * From ketan at ci.uchicago.edu Mon Jan 27 12:31:50 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Mon, 27 Jan 2014 12:31:50 -0600 (CST) Subject: [Swift-commit] r7520 - SwiftApps/swift-galaxy/swift Message-ID: <20140127183150.9B0029CFE5@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-27 12:31:50 -0600 (Mon, 27 Jan 2014) New Revision: 7520 Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.xml SwiftApps/swift-galaxy/swift/swiftforeachrange.xml Log: doc for foreach Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachlist.xml 2014-01-27 18:03:43 UTC (rev 7519) +++ SwiftApps/swift-galaxy/swift/swiftforeachlist.xml 2014-01-27 18:31:50 UTC (rev 7520) @@ -60,6 +60,21 @@ ----- **Example** -ToDo + +To run an executable in parallel over a list of parameters read from an input file, chose an executable from the Executable dropdown and a list containing items as parameters from List File. + +A sample list file is: + +/home/ketan/afile.txt +/home/ketan/bfile.txt +/home/ketan/cfile.txt + +A sample executable upload.sh is: + +scp $1 aserver.adomain.edu:~/ + +The tool will run thrice invoking the above scp command in parallel for three items listed in the list file. + + Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrange.xml 2014-01-27 18:03:43 UTC (rev 7519) +++ SwiftApps/swift-galaxy/swift/swiftforeachrange.xml 2014-01-27 18:31:50 UTC (rev 7520) @@ -60,12 +60,21 @@ **What it does** -This is a generic Swift tool. +This is a generic Swift tool that runs an executable over a range of numbers with arbitrary stepsize. ----- **Example** -ToDo +Pick up an executable from the Executable list. Select the start, end and the step size values. + +If an executable is echo.sh: + +echo $1 + +Start, end and step is 0, 9 and 2, the executable will be invoked in parallel 5 times for n where n is 0 2 4 6 8: + +echo n + From ketan at ci.uchicago.edu Mon Jan 27 13:30:57 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Mon, 27 Jan 2014 13:30:57 -0600 (CST) Subject: [Swift-commit] r7521 - SwiftApps/swift-galaxy Message-ID: <20140127193057.DEE7C9CFE5@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-27 13:30:57 -0600 (Mon, 27 Jan 2014) New Revision: 7521 Modified: SwiftApps/swift-galaxy/README.txt SwiftApps/swift-galaxy/tool_conf.xml Log: update readme Modified: SwiftApps/swift-galaxy/README.txt =================================================================== --- SwiftApps/swift-galaxy/README.txt 2014-01-27 18:31:50 UTC (rev 7520) +++ SwiftApps/swift-galaxy/README.txt 2014-01-27 19:30:57 UTC (rev 7521) @@ -1,12 +1,16 @@ -=How to install this into Galaxy= +=How to install Swift tools into Galaxy= -=Notes= +1. Symlink the swift directory in the current directory from galaxy's top level directory. For example, if Galaxy top level directory is galaxy-dist and swift directory is /home/ketan/SwiftApps/swift-galaxy/swift, -1. Untar Illinois.tgz before running powergrid application -2. The csvs in the lungsearch application are not complete, they contain just the first 50 lines +cd galaxy-dist +ln -s /home/ketan/SwiftApps/swift-galaxy/swift swift -==An example== +2. Add the tool definitions of the tools contained in this Swift to Galaxy's tool_conf.xml. This can be done by copying the text in
...
from the tool_conf.xml in swift-galaxy directory and paste it to the tool_conf.xml of the Galaxy directory. +3. (Re)start Galaxy. You should see the tools in a toolset titled Swift. + +==An example (obsolete) == + A simple Hello World Swift tool to run with Galaxy. To set up with your Galaxy environment follow the steps below: Modified: SwiftApps/swift-galaxy/tool_conf.xml =================================================================== --- SwiftApps/swift-galaxy/tool_conf.xml 2014-01-27 18:31:50 UTC (rev 7520) +++ SwiftApps/swift-galaxy/tool_conf.xml 2014-01-27 19:30:57 UTC (rev 7521) @@ -6,7 +6,9 @@
- + + + @@ -14,4 +16,5 @@
+ From lgadelha at ci.uchicago.edu Tue Jan 28 12:17:02 2014 From: lgadelha at ci.uchicago.edu (lgadelha at ci.uchicago.edu) Date: Tue, 28 Jan 2014 12:17:02 -0600 (CST) Subject: [Swift-commit] r7522 - provenancedb Message-ID: <20140128181702.7C99D9CFBF@svn.ci.uchicago.edu> Author: lgadelha Date: 2014-01-28 12:17:02 -0600 (Tue, 28 Jan 2014) New Revision: 7522 Added: provenancedb/walkthrough.asciidoc Modified: provenancedb/prov-init.sql provenancedb/prov-to-sql.sh Log: Minor fixes Provenance DB tutorial Modified: provenancedb/prov-init.sql =================================================================== --- provenancedb/prov-init.sql 2014-01-27 19:30:57 UTC (rev 7521) +++ provenancedb/prov-init.sql 2014-01-28 18:17:02 UTC (rev 7522) @@ -120,7 +120,7 @@ create view function_call as select fun_call.id, fun_call.name, fun_call.type, app_fun_call.name as app_catalog_name, fun_call.run_id as script_run_id, - to_timestamp(app_fun_call.start_time) as start_time, app_fun_call.duration, app_fun_call.final_state, app_fun_call.scratch + to_timestamp(app_fun_call.start_time) as start_time, app_fun_call.duration, app_fun_call.final_state from fun_call left outer join Modified: provenancedb/prov-to-sql.sh =================================================================== --- provenancedb/prov-to-sql.sh 2014-01-27 19:30:57 UTC (rev 7521) +++ provenancedb/prov-to-sql.sh 2014-01-28 18:17:02 UTC (rev 7522) @@ -170,7 +170,7 @@ echo " - Function call names." while read thread appname; do - fid=$(echo $thread | sed "s/run.../&-$CKSUM/g") + fid=$(echo $thread) echo "UPDATE fun_call SET name='$appname' WHERE id='$fid';" >> /tmp/$RUNID.sql done < invocation-procedure-names.txt Added: provenancedb/walkthrough.asciidoc =================================================================== --- provenancedb/walkthrough.asciidoc (rev 0) +++ provenancedb/walkthrough.asciidoc 2014-01-28 18:17:02 UTC (rev 7522) @@ -0,0 +1,114 @@ += Demonstration of Swift's Provenance Database = + +Swift's Provenance Database is a set of scripts, SQL functions and stored procedures, and a query interface. It extracts provenance information from Swift's log files into a relational database. The tools are downloadable through SVN with the command: + +-------------------------------------- +svn co https://svn.ci.uchicago.edu/svn/vdl2/provenancedb +-------------------------------------- + +== Database Configuration + +Swift Provenance Database depends on PostgreSQL, version 9.0 or later, due to the use of _Common Table Expressions_ for computing transitive closures of data derivation relationships, supported only on these versions. The file +prov-init.sql+ contains the database schema, and the file +pql_functions.sql+ contain the function and stored procedure definitions. If the user has not created a provenance database yet, this can be done with the following commands (one may need to add "+-U+ _username_" and "+-h+ _hostname_" before the database name "+provdb+", depending on the database server configuration): + +-------------------------------------- +createdb provdb +psql -f prov-init.sql provdb +psql -f pql-functions.sql provdb +-------------------------------------- + +== Swift Provenance Database Configuration + +The file +etc/provenance.config+ should be edited to define the database configuration. The location of the directory containing the log files should be defined in the variable +LOGREPO+. For instance: + +-------------------------------------- +export LOGREPO=~/swift-logs/ +-------------------------------------- + +The command used for connecting to the database should be defined in the variable SQLCMD. For example, to connect to CI's PostgreSQL? database: + +-------------------------------------- +export SQLCMD="psql -h db.ci.uchicago.edu -U provdb provdb" +-------------------------------------- + +The script +./swift-prov-import-all-logs+ will import provenance information from the log files in +$LOGREPO+ into the database. One can use +./swift-prov-import-all-logs rebuild+ to reinitialize database before importing provenance information. + +== Swift Configuration + +To enable the generation of provenance information in Swift's log files and to trasfer wrapper logs back to the submitting machine for runtime behavior information extraction the options +provenance.log+ and wrapperlog.always.transfer=true should be set to true in +etc/swift.properties+: + +-------------------------------------- +provenance.log=true +wrapperlog.always.transfer=true +-------------------------------------- + +If Swift's SVN revision is 3417 or greater, the following options should be set in +etc/log4j.properties+: + +-------------------------------------- +log4j.logger.swift=DEBUG +log4j.logger.org.griphyn.vdl.karajan.lib=DEBUG +-------------------------------------- + +== Demonstration: Image Rendering Workflow + +The workflow creates a number of scene files that are rendered using the +c-ray+ application. The images generated are given as input to the +convert+ application to generate a movie. + +The Swift scripts can be downloaded from: + +-------------------------------------- +http://www.lncc.br/~lgadelha/c-ray-swift.tgz +-------------------------------------- + +The image rendering application source code can be downloaded from: + +-------------------------------------- +http://www.futuretech.blinkenlights.nl/depot/c-ray-1.1.tar.gz +-------------------------------------- + +The workflow also requires ImageMagick with ffmpeg support. It accepts the following arguments: + +- +resolution+: the image resolution in pixels, default is 800x600, +- +threads+: the number of execution threads of the image rendering application (c-ray), default is 1, +- +steps+: number of frames to be rendered, default is 10, +- +delay+: delay between video frames in hundreths of a second, default is 0, +- +quality+: quality of mpeg4 video, default is 75. + +To run the workflow one can use for instance: + +-------------------------------------- +$ swift -sites.file sites.xml -tc.file tc.data c-ray.swift -resolution=1366x768 -threads=1 -steps=30 -quality=95 -delay=50 +-------------------------------------- + +To import provenance into the database and connect to the database one can use: + +-------------------------------------- +$ swift-prov-import-all-logs +$ psql provdb +-------------------------------------- + +To know which script runs are recorded in the database one can query the +script_run_summary+ view: + +-------------------------------------- +provdb=> select * from script_run_summary; + + id | swift_version | cog_version | final_state | start_time | duration | script_filename +-------------------------+---------------+-------------+-------------+----------------------------+----------+----------------- + c-ray-run000-2046746221 | 7447 | 3852 | SUCCESS | 2014-01-28 10:28:47.692-06 | 348.127 | c-ray.swift +-------------------------------------- + +The +dataset_all+ view stores information about all datasets manipulated during a script run: + +-------------------------------------- +provdb=> select * from dataset_all; + + dataset_id | dataset_type | dataset_value | dataset_filename +---------------------------------------------+--------------+-----------------+------------------------------ + dataset:20140128-1028-66i4t8x1:720000000026 | mapped | | file://localhost/tscene + dataset:20140128-1028-66i4t8x1:720000000041 | mapped | | file://localhost/output.mpeg + dataset:20140128-1028-66i4t8x1:720000000001 | primitive | 1 | + dataset:20140128-1028-66i4t8x1:720000000002 | primitive | .ppm | + dataset:20140128-1028-66i4t8x1:720000000003 | primitive | 800x600 | + dataset:20140128-1028-66i4t8x1:720000000004 | primitive | resolution | + dataset:20140128-1028-66i4t8x1:720000000005 | primitive | steps | + ... +-------------------------------------- + From lgadelha at ci.uchicago.edu Tue Jan 28 17:27:34 2014 From: lgadelha at ci.uchicago.edu (lgadelha at ci.uchicago.edu) Date: Tue, 28 Jan 2014 17:27:34 -0600 (CST) Subject: [Swift-commit] r7523 - provenancedb Message-ID: <20140128232734.65DE59CCA7@svn.ci.uchicago.edu> Author: lgadelha Date: 2014-01-28 17:27:34 -0600 (Tue, 28 Jan 2014) New Revision: 7523 Modified: provenancedb/walkthrough.asciidoc Log: Updates to tutorial Modified: provenancedb/walkthrough.asciidoc =================================================================== --- provenancedb/walkthrough.asciidoc 2014-01-28 18:17:02 UTC (rev 7522) +++ provenancedb/walkthrough.asciidoc 2014-01-28 23:27:34 UTC (rev 7523) @@ -8,7 +8,7 @@ == Database Configuration -Swift Provenance Database depends on PostgreSQL, version 9.0 or later, due to the use of _Common Table Expressions_ for computing transitive closures of data derivation relationships, supported only on these versions. The file +prov-init.sql+ contains the database schema, and the file +pql_functions.sql+ contain the function and stored procedure definitions. If the user has not created a provenance database yet, this can be done with the following commands (one may need to add "+-U+ _username_" and "+-h+ _hostname_" before the database name "+provdb+", depending on the database server configuration): +Swift Provenance Database depends on PostgreSQL, version 8.4 or later, due to the use of _Common Table Expressions_ for computing transitive closures of data derivation relationships, supported only on these versions. The file +prov-init.sql+ contains the database schema, and the file +pql_functions.sql+ contain the function and stored procedure definitions. If the user has not created a provenance database yet, this can be done with the following commands (one may need to add "+-U+ _username_" and "+-h+ _hostname_" before the database name "+provdb+", depending on the database server configuration): -------------------------------------- createdb provdb @@ -70,7 +70,7 @@ - +threads+: the number of execution threads of the image rendering application (c-ray), default is 1, - +steps+: number of frames to be rendered, default is 10, - +delay+: delay between video frames in hundreths of a second, default is 0, -- +quality+: quality of mpeg4 video, default is 75. +- +quality+: quality of MPEG video, default is 75. To run the workflow one can use for instance: @@ -85,6 +85,8 @@ $ psql provdb -------------------------------------- +=== Overview of main tables, views, and functions === + To know which script runs are recorded in the database one can query the +script_run_summary+ view: -------------------------------------- @@ -93,6 +95,7 @@ id | swift_version | cog_version | final_state | start_time | duration | script_filename -------------------------+---------------+-------------+-------------+----------------------------+----------+----------------- c-ray-run000-2046746221 | 7447 | 3852 | SUCCESS | 2014-01-28 10:28:47.692-06 | 348.127 | c-ray.swift + c-ray-run001-1976615697 | 7447 | 3852 | SUCCESS | 2014-01-28 11:41:40.933-06 | 53.007 | c-ray.swift -------------------------------------- The +dataset_all+ view stores information about all datasets manipulated during a script run: @@ -112,3 +115,189 @@ ... -------------------------------------- +The +function_call+ view stores information about all functions called during a script run: + +-------------------------------------- + id | name | type | app_catalog_name | script_run_id | start_time | duration | final_state +-----------------------------------------------+-------------------------+-------------+------------------+-------------------------+----------------------------+----------+------------- + c-ray-run000-2046746221:R | c-ray-run000-2046746221 | rootthread | | c-ray-run000-2046746221 | | | + c-ray-run000-2046746221:R-12-0x2 | generate | execute | genscenes | c-ray-run000-2046746221 | 2014-01-28 10:28:49.706-06 | 0 | END_SUCCESS + c-ray-run000-2046746221:R-12-1x2 | render | execute | cray | c-ray-run000-2046746221 | 2014-01-28 10:29:27.142-06 | 0 | END_SUCCESS + c-ray-run000-2046746221:R-12-3-0 | generate | execute | genscenes | c-ray-run000-2046746221 | 2014-01-28 10:28:49.633-06 | 0 | END_SUCCESS + c-ray-run000-2046746221:R-12-1-0 | generate | execute | genscenes | c-ray-run000-2046746221 | 2014-01-28 10:28:49.551-06 | 0 | END_SUCCESS + c-ray-run000-2046746221:R-12-2-1 | render | execute | cray | c-ray-run000-2046746221 | 2014-01-28 10:30:29.331-06 | 0 | END_SUCCESS + c-ray-run000-2046746221:R-12-3-1 | render | execute | cray | c-ray-run000-2046746221 | 2014-01-28 10:29:39.597-06 | 0 | END_SUCCESS + c-ray-run000-2046746221:R-12-0-1 | render | execute | cray | c-ray-run000-2046746221 | 2014-01-28 10:29:59.428-06 | 0 | END_SUCCESS + c-ray-run001-1976615697:451007 | arg | function | | c-ray-run001-1976615697 | | | + c-ray-run001-1976615697:451008 | toint | function | | c-ray-run001-1976615697 | | | + c-ray-run001-1976615697:451009 | filename | function | | c-ray-run001-1976615697 | | | + c-ray-run001-1976615697:451010 | filename | function | | c-ray-run001-1976615697 | | | + ... +-------------------------------------- + +The +app_exec+ table has information about external application executions, which are triggered by app functions. Information from the +proc+ filesystem is also gathered. + +-------------------------------------- +provdb=> select * from app_exec ; + id | app_fun_call_id | start_time | duration | final_state | site | real_secs | kernel_secs | user_secs | percent_cpu | max_rss | avg_rss | avg_tot_vm | avg_priv_data | avg_priv_stack | avg_shared_text | page_size | major_pgfaults | minor_pgfaults | swaps | invol_context_switches | vol_waits | fs_reads | fs_writes | sock_recv | sock_send | signals | exit_status +--------------------------------------------+-----------------------------------+----------------+--------------------+-------------+-----------+-----------+-------------+-----------+-------------+---------+---------+------------+---------------+----------------+-----------------+-----------+----------------+----------------+-------+------------------------+-----------+----------+-----------+-----------+-----------+---------+------------- + c-ray-run000-2046746221:genscenes-1n25smll | c-ray-run000-2046746221:R-12-5-0 | 1390926529.384 | 0.165999889373779 | JOB_END | localhost | 0.00 | 0.00 | 0.00 | 28 | 4912 | 0 | 0 | 0 | 0 | 0 | 4096 | 0 | 2170 | 0 | 8 | 20 | 0 | 48 | 0 | 0 | 0 | 0 + c-ray-run000-2046746221:genscenes-3n25smll | c-ray-run000-2046746221:R-12-7-0 | 1390926529.553 | 0.0770001411437988 | JOB_END | localhost | 0.00 | 0.00 | 0.00 | 33 | 4912 | 0 | 0 | 0 | 0 | 0 | 4096 | 0 | 2171 | 0 | 9 | 25 | 0 | 48 | 0 | 0 | 0 | 0 + c-ray-run000-2046746221:cray-po25smll | c-ray-run000-2046746221:R-12-29-1 | 1390926838.121 | 24.9839999675751 | JOB_END | localhost | 24.88 | 0.02 | 24.75 | 99 | 19936 | 0 | 0 | 0 | 0 | 0 | 4096 | 0 | 767 | 0 | 5422 | 3 | 0 | 6160 | 0 | 0 | 0 | 0 + c-ray-run000-2046746221:cray-xn25smll | c-ray-run000-2046746221:R-12-1x2 | 1390926530.803 | 36.3389999866486 | JOB_END | localhost | 36.27 | 0.00 | 36.14 | 99 | 19936 | 0 | 0 | 0 | 0 | 0 | 4096 | 0 | 767 | 0 | 6305 | 2 | 0 | 6168 | 0 | 0 | 0 | 0 + c-ray-run000-2046746221:cray-zn25smll | c-ray-run000-2046746221:R-12-3-1 | 1390926555.230 | 24.3659999370575 | JOB_END | localhost | 24.31 | 0.01 | 24.23 | 99 | 19952 | 0 | 0 | 0 | 0 | 0 | 4096 | 0 | 768 | 0 | 3450 | 3 | 0 | 6160 | 0 | 0 | 0 | 0 + c-ray-run001-1976615697:cray-kn22vmll | c-ray-run001-1976615697:R-12-1x2 | 1390930903.442 | 9.79500007629395 | JOB_END | localhost | 9.71 | 0.00 | 9.69 | 99 | 11056 | 0 | 0 | 0 | 0 | 0 | 4096 | 0 | 723 | 0 | 1613 | 3 | 0 | 2824 | 0 | 0 | 0 | 0 + c-ray-run001-1976615697:cray-ln22vmll | c-ray-run001-1976615697:R-12-9-1 | 1390930903.442 | 9.7960000038147 | JOB_END | localhost | 9.72 | 0.00 | 9.71 | 99 | 11056 | 0 | 0 | 0 | 0 | 0 | 4096 | 0 | 723 | 0 | 979 | 3 | 0 | 2824 | 0 | 0 | 0 | 0 + c-ray-run000-2046746221:cray-7o25smll | c-ray-run000-2046746221:R-12-13-1 | 1390926633.314 | 25.8210000991821 | JOB_END | localhost | 25.73 | 0.00 | 25.59 | 99 | 28016 | 0 | 0 | 0 | 0 | 0 | 4096 | 0 | 766 | 0 | 3665 | 3 | 0 | 6160 | 0 | 0 | 0 | 0 + c-ray-run000-2046746221:convert-qo25smll | c-ray-run000-2046746221:R-13 | 1390926863.116 | 12.6180000305176 | JOB_END | localhost | 12.38 | 0.61 | 14.21 | 119 | 2049520 | 0 | 0 | 0 | 0 | 0 | 4096 | 0 | 42071 | 0 | 2120 | 233 | 0 | 354104 | 0 | 0 | 0 | 0 + c-ray-run001-1976615697:convert-un22vmll | c-ray-run001-1976615697:R-13 | 1390930953.408 | 0.449000120162964 | JOB_END | localhost | 0.31 | 0.08 | 1.01 | 346 | 343024 | 0 | 0 | 0 | 0 | 0 | 4096 | 0 | 16820 | 0 | 224 | 144 | 0 | 1464 | 0 | 0 | 0 | 0 +-------------------------------------- + +The +provenance_summary+ view contains the main facts related to provenance, i.e. what each function call read as input and produced as output. The first two columns identifiy the script run. The next columns, up to +input_dataset_filename+, describe the input dataset. The next three columns identify the function called. The remaining columns describe the output dataset. This is the query output on this view: + +-------------------------------------- +provdb=> select * from provenance_summary; + + script_run_id | script_filename | input_dataset_id | input_dataset_type | input_parameter_name | input_dataset_value | input_dataset_filename | function_call_id | function_call_type | function_call_name | output_dataset_id | output_parameter_name | output_dataset_type | output_dataset_value | output_dataset_filename +-------------------------+-----------------+---------------------------------------------+--------------------+----------------------+---------------------+------------------------------+-----------------------------------------------+--------------------+-------------------------+---------------------------------------------+-----------------------+---------------------+----------------------+------------------------------ + c-ray-run001-1976615697 | c-ray.swift | dataset:20140128-1141-f0xuh6m8:720000000013 | primitive | undefined | threads | | c-ray-run001-1976615697:451000 | function | arg | dataset:20140128-1141-f0xuh6m8:720000000042 | result | primitive | 1 | + c-ray-run001-1976615697 | c-ray.swift | dataset:20140128-1141-f0xuh6m8:720000000042 | primitive | undefined | 1 | | c-ray-run001-1976615697:451002 | function | toint | dataset:20140128-1141-f0xuh6m8:720000000043 | result | primitive | 1 | + c-ray-run001-1976615697 | c-ray.swift | dataset:20140128-1141-f0xuh6m8:720000000026 | mapped | undefined | | file://localhost/tscene | c-ray-run001-1976615697:451009 | function | filename | dataset:20140128-1141-f0xuh6m8:720000000068 | result | primitive | tscene | + c-ray-run001-1976615697 | c-ray.swift | dataset:20140128-1141-f0xuh6m8:720000000041 | mapped | undefined | | file://localhost/output.mpeg | c-ray-run001-1976615697:451050 | function | filename | dataset:20140128-1141-f0xuh6m8:720000000133 | result | primitive | output.mpeg | + c-ray-run001-1976615697 | c-ray.swift | dataset:20140128-1141-f0xuh6m8:720000000131 | primitive | element | scene.0010.ppm | | c-ray-run001-1976615697:f0xuh6m8:720000000132 | constructor | constructor | dataset:20140128-1141-f0xuh6m8:720000000132 | collection | collection | | + c-ray-run001-1976615697 | c-ray.swift | | | | | | c-ray-run001-1976615697:R | rootthread | c-ray-run001-1976615697 | dataset:20140128-1141-f0xuh6m8:720000000041 | output_movie | mapped | | file://localhost/output.mpeg + c-ray-run001-1976615697 | c-ray.swift | | | | | | c-ray-run001-1976615697:R | rootthread | c-ray-run001-1976615697 | dataset:20140128-1141-f0xuh6m8:720000000026 | template | mapped | | file://localhost/tscene + c-ray-run001-1976615697 | c-ray.swift | | | | | | c-ray-run001-1976615697:R | rootthread | c-ray-run001-1976615697 | dataset:20140128-1141-f0xuh6m8:720000000025 | quality | primitive | 75 | + c-ray-run001-1976615697 | c-ray.swift | | | | | | c-ray-run001-1976615697:R | rootthread | c-ray-run001-1976615697 | dataset:20140128-1141-f0xuh6m8:720000000024 | delay | primitive | 0 | + c-ray-run001-1976615697 | c-ray.swift | | | | | | c-ray-run001-1976615697:R | rootthread | c-ray-run001-1976615697 | dataset:20140128-1141-f0xuh6m8:720000000023 | resolution | primitive | 800x600 | + c-ray-run001-1976615697 | c-ray.swift | dataset:20140128-1141-f0xuh6m8:720000000054 | primitive | i | 3 | | c-ray-run001-1976615697:R-12-2-0 | execute | generate | dataset:20140128-1141-f0xuh6m8:720000000060 | out | other | | + c-ray-run001-1976615697 | c-ray.swift | dataset:20140128-1141-f0xuh6m8:720000000026 | mapped | t | | file://localhost/tscene | c-ray-run001-1976615697:R-12-2-0 | execute | generate | dataset:20140128-1141-f0xuh6m8:720000000060 | out | other | | + c-ray-run001-1976615697 | c-ray.swift | dataset:20140128-1141-f0xuh6m8:720000000022 | primitive | total | 10 | | c-ray-run001-1976615697:R-12-2-0 | execute | generate | dataset:20140128-1141-f0xuh6m8:720000000060 | out | other | | + c-ray-run001-1976615697 | c-ray.swift | dataset:20140128-1141-f0xuh6m8:720000000021 | primitive | t | 1 | | c-ray-run001-1976615697:R-12-2-1 | execute | render | dataset:20140128-1141-f0xuh6m8:720000000061 | o | other | | + c-ray-run001-1976615697 | c-ray.swift | dataset:20140128-1141-f0xuh6m8:720000000023 | primitive | r | 800x600 | | c-ray-run001-1976615697:R-12-2-1 | execute | render | dataset:20140128-1141-f0xuh6m8:720000000061 | o | other | | + c-ray-run001-1976615697 | c-ray.swift | dataset:20140128-1141-f0xuh6m8:720000000060 | other | i | | | c-ray-run001-1976615697:R-12-2-1 | execute | render | dataset:20140128-1141-f0xuh6m8:720000000061 | o | other | | + c-ray-run001-1976615697 | c-ray.swift | dataset:20140128-1141-f0xuh6m8:720000000025 | primitive | q | 75 | | c-ray-run001-1976615697:R-13 | execute | convert | dataset:20140128-1141-f0xuh6m8:720000000041 | o | mapped | | file://localhost/output.mpeg + c-ray-run001-1976615697 | c-ray.swift | dataset:20140128-1141-f0xuh6m8:720000000024 | primitive | d | 0 | | c-ray-run001-1976615697:R-13 | execute | convert | dataset:20140128-1141-f0xuh6m8:720000000041 | o | mapped | | file://localhost/output.mpeg + c-ray-run001-1976615697 | c-ray.swift | dataset:20140128-1141-f0xuh6m8:720000000040 | collection | i | | | c-ray-run001-1976615697:R-13 | execute | convert | dataset:20140128-1141-f0xuh6m8:720000000041 | o | mapped | | file://localhost/output.mpeg + ... +-------------------------------------- + +An +ancestors+ recursive SQL function can traverse the provenance graph defined by the production/consumption relationships (the edges of this graph can be obtained with the +provenance_graph_edge+ view) between datasets and function calls. For instance, for the dataset +dataset:20140128-1141-f0xuh6m8:720000000041+ associated to the movie file produced at the end of the workflow (last tuple in the previous query output), +ancestors+ returns the following function calls and datasets: + + +-------------------------------------- +provdb=> select * from ancestors('dataset:20140128-1141-f0xuh6m8:720000000041'); + + ancestors +----------------------------------------------+ + c-ray-run001-1976615697:R + c-ray-run001-1976615697:R-13 + dataset:20140128-1141-f0xuh6m8:720000000040 + dataset:20140128-1141-f0xuh6m8:720000000024 + dataset:20140128-1141-f0xuh6m8:720000000025 + c-ray-run001-1976615697:f0xuh6m8:720000000040 + dataset:20140128-1141-f0xuh6m8:720000000058 + dataset:20140128-1141-f0xuh6m8:720000000059 + dataset:20140128-1141-f0xuh6m8:720000000061 + dataset:20140128-1141-f0xuh6m8:720000000099 + dataset:20140128-1141-f0xuh6m8:720000000095 + dataset:20140128-1141-f0xuh6m8:720000000067 + dataset:20140128-1141-f0xuh6m8:720000000073 + dataset:20140128-1141-f0xuh6m8:720000000083 + dataset:20140128-1141-f0xuh6m8:720000000085 + dataset:20140128-1141-f0xuh6m8:720000000087 + c-ray-run001-1976615697:R-12-0-1 + c-ray-run001-1976615697:R-12-1x2 + c-ray-run001-1976615697:R-12-2-1 + c-ray-run001-1976615697:R-12-5-1 + c-ray-run001-1976615697:R-12-6-1 + c-ray-run001-1976615697:R-12-7-1 + c-ray-run001-1976615697:R-12-8-1 + c-ray-run001-1976615697:R-12-9-1 + c-ray-run001-1976615697:R-12-4-1 + c-ray-run001-1976615697:R-12-3-1 + dataset:20140128-1141-f0xuh6m8:720000000056 + dataset:20140128-1141-f0xuh6m8:720000000057 + dataset:20140128-1141-f0xuh6m8:720000000023 + dataset:20140128-1141-f0xuh6m8:720000000021 + dataset:20140128-1141-f0xuh6m8:720000000060 + dataset:20140128-1141-f0xuh6m8:720000000066 + dataset:20140128-1141-f0xuh6m8:720000000072 + dataset:20140128-1141-f0xuh6m8:720000000078 + dataset:20140128-1141-f0xuh6m8:720000000084 + dataset:20140128-1141-f0xuh6m8:720000000086 + dataset:20140128-1141-f0xuh6m8:720000000092 + dataset:20140128-1141-f0xuh6m8:720000000096 + c-ray-run001-1976615697:R-12-2-0 + c-ray-run001-1976615697:R-12-0x2 + c-ray-run001-1976615697:R-12-1-0 + c-ray-run001-1976615697:R-12-6-0 + c-ray-run001-1976615697:R-12-7-0 + c-ray-run001-1976615697:R-12-8-0 + c-ray-run001-1976615697:R-12-9-0 + c-ray-run001-1976615697:R-12-5-0 + c-ray-run001-1976615697:R-12-4-0 + c-ray-run001-1976615697:R-12-3-0 + dataset:20140128-1141-f0xuh6m8:720000000026 + dataset:20140128-1141-f0xuh6m8:720000000054 + dataset:20140128-1141-f0xuh6m8:720000000022 + dataset:20140128-1141-f0xuh6m8:720000000052 + dataset:20140128-1141-f0xuh6m8:720000000053 + dataset:20140128-1141-f0xuh6m8:720000000063 + dataset:20140128-1141-f0xuh6m8:720000000064 + dataset:20140128-1141-f0xuh6m8:720000000065 + dataset:20140128-1141-f0xuh6m8:720000000076 + dataset:20140128-1141-f0xuh6m8:720000000077 + dataset:20140128-1141-f0xuh6m8:720000000062 + dataset:20140128-1141-f0xuh6m8:720000000055 +-------------------------------------- + +The main provenance database entities (script run, function call, dataset) can be annotated with a key-value pair. These can be added manually or by some _ad-hoc_ script. For instance, for the OOPS workflow there is a script, located in the +apps/OOPS+ directory in the provenance scripts directory, that can process files manipulated by in the script run to extract domain-specific information as annotations. The following SQL commands simulates creating annotations in the underlying database tables for annotations, and lists the annotations created querying the +annotation+ view: + +-------------------------------------- +provdb=> insert into annot_dataset_text values ('dataset:20140128-1141-f0xuh6m8:720000000026', 'geometric_object', 'sphere'); +provdb=> insert into annot_app_exec_text values ('c-ray-run000-2046746221:cray-xn25smll', 'version', '1.1'); +provdb=> insert into annot_dataset_num values ('dataset:20140128-1141-f0xuh6m8:720000000041', 'fps', 25); + +provdb=> select * from annotation; + entity_id | entity_type | key | numeric_value | text_value +---------------------------------------------+-------------+------------------+---------------+------------ + dataset:20140128-1141-f0xuh6m8:720000000026 | dataset | geometric_object | | sphere + c-ray-run000-2046746221:cray-xn25smll | app_exec | version | | 1.1 + dataset:20140128-1141-f0xuh6m8:720000000041 | dataset | fps | 25 | +-------------------------------------- + +The +provenance_all+ _mega view_ contains most of the information stored in the underlying provenance database tables. For instance, the following queries compare different runs according to specific parameter and annotation values: + +-------------------------------------- +provdb=> select script_run_id, output_parameter_name, output_dataset_value + from provenance_all + where output_parameter_name='resolution'; + + script_run_id | output_parameter_name | output_dataset_value +-------------------------+-----------------------+---------------------- + c-ray-run001-1976615697 | resolution | 800x600 + c-ray-run000-2046746221 | resolution | 1366x768 +-------------------------------------- + +-------------------------------------- +provdb=> select script_run_id, output_parameter_name, output_dataset_value + from provenance_all + where output_parameter_name='quality'; + + script_run_id | output_parameter_name | output_dataset_value +-------------------------+-----------------------+---------------------- + c-ray-run001-1976615697 | quality | 75 + c-ray-run000-2046746221 | quality | 95 +-------------------------------------- + +-------------------------------------- +provdb=> select distinct script_run_id, output_dataset_filename, output_dataset_annotation_key, output_dataset_annotation_numeric_value + from provenance_all + where output_dataset_annotation_key='fps'; + + script_run_id | output_dataset_filename | output_dataset_annotation_key | output_dataset_annotation_numeric_value +-------------------------+------------------------------+-------------------------------+----------------------------------------- + c-ray-run000-2046746221 | file://localhost/output.mpeg | fps | 60 + c-ray-run001-1976615697 | file://localhost/output.mpeg | fps | 25 +-------------------------------------- From ketan at ci.uchicago.edu Wed Jan 29 10:55:21 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Wed, 29 Jan 2014 10:55:21 -0600 (CST) Subject: [Swift-commit] r7524 - in SwiftApps/swift-galaxy/swift: . lungsearch test_exec Message-ID: <20140129165521.C95F59CCA7@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-29 10:55:20 -0600 (Wed, 29 Jan 2014) New Revision: 7524 Added: SwiftApps/swift-galaxy/swift/test_exec/ls2.sh Modified: SwiftApps/swift-galaxy/swift/lungsearch/lungsearch.xml SwiftApps/swift-galaxy/swift/swiftforeachlist.xml Log: swift exec type Modified: SwiftApps/swift-galaxy/swift/lungsearch/lungsearch.xml =================================================================== --- SwiftApps/swift-galaxy/swift/lungsearch/lungsearch.xml 2014-01-28 23:27:34 UTC (rev 7523) +++ SwiftApps/swift-galaxy/swift/lungsearch/lungsearch.xml 2014-01-29 16:55:20 UTC (rev 7524) @@ -1,5 +1,5 @@ - Swift - Power Grid Inference for Stochastic Optimization + A Medical Application swift-lungsearch $site $lastslice $log_file Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachlist.xml 2014-01-28 23:27:34 UTC (rev 7523) +++ SwiftApps/swift-galaxy/swift/swiftforeachlist.xml 2014-01-29 16:55:20 UTC (rev 7524) @@ -17,7 +17,7 @@ - + Added: SwiftApps/swift-galaxy/swift/test_exec/ls2.sh =================================================================== --- SwiftApps/swift-galaxy/swift/test_exec/ls2.sh (rev 0) +++ SwiftApps/swift-galaxy/swift/test_exec/ls2.sh 2014-01-29 16:55:20 UTC (rev 7524) @@ -0,0 +1 @@ +ls Property changes on: SwiftApps/swift-galaxy/swift/test_exec/ls2.sh ___________________________________________________________________ Added: svn:executable + * From ketan at ci.uchicago.edu Wed Jan 29 16:39:39 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Wed, 29 Jan 2014 16:39:39 -0600 (CST) Subject: [Swift-commit] r7525 - SwiftApps/swift-galaxy/swift Message-ID: <20140129223939.7B15A9CFE5@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-29 16:39:39 -0600 (Wed, 29 Jan 2014) New Revision: 7525 Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.sh SwiftApps/swift-galaxy/swift/swiftforeachlist.xml SwiftApps/swift-galaxy/swift/swiftforeachrange.sh SwiftApps/swift-galaxy/swift/swiftforeachrange.xml Log: _ Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.sh =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachlist.sh 2014-01-29 16:55:20 UTC (rev 7524) +++ SwiftApps/swift-galaxy/swift/swiftforeachlist.sh 2014-01-29 22:39:39 UTC (rev 7525) @@ -24,13 +24,13 @@ sh @_exec _arg stdout=@_out stderr=@_err; } -file out[]; -file err[]; file exec<"$executable">; file listfile<"$listfile">; string list[] = readData(listfile); foreach l, i in list{ - (out[i],err[i]) = anapp(exec, l); + file out ; + file err ; + (out,err) = anapp(exec, l); } EOF Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachlist.xml 2014-01-29 16:55:20 UTC (rev 7524) +++ SwiftApps/swift-galaxy/swift/swiftforeachlist.xml 2014-01-29 22:39:39 UTC (rev 7525) @@ -43,9 +43,11 @@ + + .. class:: warningmark Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.sh =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrange.sh 2014-01-29 16:55:20 UTC (rev 7524) +++ SwiftApps/swift-galaxy/swift/swiftforeachrange.sh 2014-01-29 22:39:39 UTC (rev 7525) @@ -28,11 +28,11 @@ sh @_exec _i stdout=@_out stderr=@_err; } -file out[]; -file err[]; file exec<"$executable">; foreach i in [$rstart:$rend:$stepsize]{ - (out[i],err[i]) = anapp(exec, i); + file out ; + file err ; + (out,err) = anapp(exec, i); } EOF Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrange.xml 2014-01-29 16:55:20 UTC (rev 7524) +++ SwiftApps/swift-galaxy/swift/swiftforeachrange.xml 2014-01-29 22:39:39 UTC (rev 7525) @@ -19,7 +19,7 @@ - + From davidk at ci.uchicago.edu Wed Jan 29 19:13:39 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 29 Jan 2014 19:13:39 -0600 (CST) Subject: [Swift-commit] r7526 - SwiftApps Message-ID: <20140130011339.918AE9CFE5@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-29 19:13:39 -0600 (Wed, 29 Jan 2014) New Revision: 7526 Added: SwiftApps/heap-plot/ Log: Heap plot script From davidk at ci.uchicago.edu Wed Jan 29 19:14:51 2014 From: davidk at ci.uchicago.edu (davidk at ci.uchicago.edu) Date: Wed, 29 Jan 2014 19:14:51 -0600 (CST) Subject: [Swift-commit] r7527 - SwiftApps/heap-plot Message-ID: <20140130011451.480E69CFE5@svn.ci.uchicago.edu> Author: davidk Date: 2014-01-29 19:14:51 -0600 (Wed, 29 Jan 2014) New Revision: 7527 Added: SwiftApps/heap-plot/heap-plot.pl Log: heap-plot.pl Added: SwiftApps/heap-plot/heap-plot.pl =================================================================== --- SwiftApps/heap-plot/heap-plot.pl (rev 0) +++ SwiftApps/heap-plot/heap-plot.pl 2014-01-30 01:14:51 UTC (rev 7527) @@ -0,0 +1,87 @@ +#!/usr/bin/perl -w +use strict; +use Time::Local; + +# Usage: ./heapplot.pl run000.log +my $first_timestamp=0; + +# Read file +my $filename=shift; +open(FILE, "$filename") || die "Unable to open $filename\n"; +my @filedata = ; +close(FILE); + +# Open file for writing +open(FILE, ">heap-plot.dat") || die "Unable to open activityplot.dat for writing\n"; +print FILE "Time Max Crt Used\n"; + +sub get_value +{ + my $statement = $_[0]; + my $value = (split /:/, $statement)[1]; + chop($value); + return $value; +} + +sub timestamp_to_seconds +{ + (my $date, my $hhmmss, my @junk) = split('\s+', $_[0]); + $hhmmss = (split /,/, $hhmmss)[0]; + (my $year, my $month, my $monthday) = split('\-', $date); + (my $hh, my $mm, my $ss) = split(':', $hhmmss); + my $time = timelocal($ss, $mm, $hh, $monthday-1, $month, $year); + return $time; +} + +foreach my $line(@filedata) { + if( $line =~ m/HeapMax/ ) { + $line =~ s/HeapMax: /HeapMax:/g; + $line =~ s/CrtHeap: /CrtHeap:/g; + $line =~ s/UsedHeap: /UsedHeap:/g; + my @words = split('\s+', $line); + my $timestamp = timestamp_to_seconds($line); + + if($first_timestamp == 0) { $first_timestamp = $timestamp; $timestamp=0; } + else { $timestamp = $timestamp - $first_timestamp; } + + my $max = 0; + my $crt = 0; + my $used = 0; + my $active = 0; + + foreach my $word(@words) { + if($word =~ /HeapMax:/) { $max = get_value($word); } + elsif($word =~ /CrtHeap:/) { $crt = get_value($word); } + elsif($word =~ /UsedHeap:/) { $used = get_value($word); } + # elsif($word =~ /Active:/) { $active = get_value($word); } + } + + # Adjust values for plotting + print FILE "$timestamp $max $crt $used\n"; + } +} + +close(FILE); +open(FILE, ">heap-plot.gp") || die "Unable to create heap-plot.gp"; + +my $gp = < Author: ketan Date: 2014-01-30 09:26:30 -0600 (Thu, 30 Jan 2014) New Revision: 7528 Added: SwiftApps/swift-galaxy/swift/swiftforeachrangepp.py Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.xml SwiftApps/swift-galaxy/swift/swiftforeachrange.xml Log: add postprocess script Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachlist.xml 2014-01-30 01:14:51 UTC (rev 7527) +++ SwiftApps/swift-galaxy/swift/swiftforeachlist.xml 2014-01-30 15:26:30 UTC (rev 7528) @@ -1,4 +1,4 @@ - + A tool to run executable over an itemlist via Swift foreach parallel construct Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrange.xml 2014-01-30 01:14:51 UTC (rev 7527) +++ SwiftApps/swift-galaxy/swift/swiftforeachrange.xml 2014-01-30 15:26:30 UTC (rev 7528) @@ -1,4 +1,4 @@ - + A generic tool to run executable via Swift foreach parallel construct @@ -51,6 +51,9 @@ + + + .. class:: warningmark Added: SwiftApps/swift-galaxy/swift/swiftforeachrangepp.py =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrangepp.py (rev 0) +++ SwiftApps/swift-galaxy/swift/swiftforeachrangepp.py 2014-01-30 15:26:30 UTC (rev 7528) @@ -0,0 +1,67 @@ +#post processing, set build for data and add additional data to history^M +from galaxy import datatypes, config, jobs, tools +from galaxy.model import HistoryDatasetAssociation +import operator +import shutil +import os +import glob +from lxml import etree +from os.path import basename + +def createDsRef(outDataItems, param_dict, outputName, outputFormat, outputDsRefName, nameSpace): + dsrefXML="\n" + dsrefXML=dsrefXML+"\n" + + dsrefFileName="" + + for outDataName, outDataItem in outDataItems: + if outDataName==outputDsRefName: + dsrefFileName=outDataItem.get_file_name() + else: + if outDataName==outputName: + dsrefXML=dsrefXML+"\n" % (outDataItem.id,outDataItem.name,outDataItem.get_file_name(),outputFormat) + + print "dsrefFileName:"+dsrefFileName + + primaryCollectedDatasets=param_dict["__collected_datasets__"]["primary"] + + for primaryCollectedDataset in primaryCollectedDatasets: + primaryCollectedDatasetItems=primaryCollectedDatasets[primaryCollectedDataset] + for primaryCollectedDatasetItem in primaryCollectedDatasetItems: + outDataItem=primaryCollectedDatasetItems[primaryCollectedDatasetItem] + if outputFormat in outDataItem.extension: + + dsrefXML=dsrefXML+"\n" % (outDataItem.id,outDataItem.name,outDataItem.get_file_name(),outDataItem.extension) + + + dsrefXML=dsrefXML+"\n" + + return dsrefFileName, dsrefXML + +def writeDsRef(dsrefFileName, dsrefXML): + dsrefFile = open(dsrefFileName, "w",0) + dsrefFile.write(dsrefXML) + dsrefFile.flush() + dsrefFile.close() + +def setSizeAndPeak(outDataItems,outputDsRefName): + for outDataName, outDataItem in outDataItems: + if outDataName==outputDsRefName: + outDataItem.dataset.file_size=None + outDataItem.set_size() + outDataItem.set_peek() + +def exec_after_process(app, inp_data, out_data, param_dict, tool, stdout, stderr): + + outDataItems = out_data.items() + outDataItems = sorted(outDataItems, key=operator.itemgetter(0)) + + dsrefAcmoFileName, dsrefAcmoXML = createDsRef(outDataItems,param_dict,"acmo","acmo.csv","acmoDsRef","facit/acmo") + + writeDsRef(dsrefAcmoFileName, dsrefAcmoXML) + + setSizeAndPeak(outDataItems,"acmoDsRef") + + + app.model.context.flush() + Property changes on: SwiftApps/swift-galaxy/swift/swiftforeachrangepp.py ___________________________________________________________________ Added: svn:executable + * From ketan at ci.uchicago.edu Thu Jan 30 17:20:58 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Thu, 30 Jan 2014 17:20:58 -0600 (CST) Subject: [Swift-commit] r7529 - in SwiftApps/swift-galaxy: . swift Message-ID: <20140130232058.B89649CFE5@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-30 17:20:58 -0600 (Thu, 30 Jan 2014) New Revision: 7529 Added: SwiftApps/swift-galaxy/swift/postprocess.py SwiftApps/swift-galaxy/swift/swift-catsn.sh SwiftApps/swift-galaxy/swift/swift-catsn.xml SwiftApps/swift-galaxy/swift/swift-skeleton.xml Removed: SwiftApps/swift-galaxy/swift/catsn.xml SwiftApps/swift-galaxy/swift/swift-catsn SwiftApps/swift-galaxy/swift/swiftforeachrangepp.py Modified: SwiftApps/swift-galaxy/README.txt SwiftApps/swift-galaxy/swift/swiftforeachlist.sh SwiftApps/swift-galaxy/swift/swiftforeachlist.xml SwiftApps/swift-galaxy/swift/swiftforeachrange.sh SwiftApps/swift-galaxy/swift/swiftforeachrange.xml Log: swift galaxy enhancements Modified: SwiftApps/swift-galaxy/README.txt =================================================================== --- SwiftApps/swift-galaxy/README.txt 2014-01-30 15:26:30 UTC (rev 7528) +++ SwiftApps/swift-galaxy/README.txt 2014-01-30 23:20:58 UTC (rev 7529) @@ -9,47 +9,31 @@ 3. (Re)start Galaxy. You should see the tools in a toolset titled Swift. -==An example (obsolete) == +==An example of integrating a Swift tool into Galaxy== A simple Hello World Swift tool to run with Galaxy. To set up with your Galaxy environment follow the steps below: -0. Prerequisite: Sun/Oracle java. Should work with IBM java but not tested rigorously. +0. Prerequisite: Sun/Oracle java. Should work with IBM java but not tested. 1. Download and install Swift where Galaxy server is running. From a command prompt the following wget will pull the latest release: -wget http://www.ci.uchicago.edu/swift/packages/swift-0.94.1.tar.gz +wget http://swiftlang.org/packages/swift-0.94.2-RC2.tar.gz -Do untar at a suitable location: +2. Create a swift-tool directory and copy the Swift tool skeleton files in this directory -tar zxf swift-0.94.1.tar.gz +cp swift/swift-skeleton* /location/of/galaxy-server/tools/ -Put the bin dir on system PATH: +3. Edit the tool_conf.xml file present at the top-level of galaxy directory tree to add the following lines between the and xml tags: -export PATH=$PATH:/location/to/swift-0.94.1/bin - -Edit above line to match the location of Swift and add it to your environment file (.bashrc, .bash_profile or the corresponding ones for other shells). - -Make sure Swift is available from a command prompt: - -which swift -swift -version - -2. untar and copy the swift-galaxy.tgz to the tools directory of your Galaxy location: - -tar zxf swift-galaxy.tgz - -cp -r swift-galaxy /location/of/galaxy-server/tools/ - -3. Edit the tool_conf.xml file present at the top-level of galaxy-server directory tree to add the following lines between the and xml tags: - -
- +
+
4. Restart the Galaxy server. The swift-galaxy tool should be available in the tool box of Galaxy GUI. -5. Invoke it by entering any number in the dialog box or leaving it to default. A message "Hello World!" will be written to output files as many times and the files should be available for browsing from Galaxy GUI. +5. Invoke it by entering any number in the dialog box or leaving it to default. -Please note that the Cluster option is not implemented in this example. +6. For examples of othe Galaxy-Swift tools, look into the swift directoty. + Deleted: SwiftApps/swift-galaxy/swift/catsn.xml =================================================================== --- SwiftApps/swift-galaxy/swift/catsn.xml 2014-01-30 15:26:30 UTC (rev 7528) +++ SwiftApps/swift-galaxy/swift/catsn.xml 2014-01-30 23:20:58 UTC (rev 7529) @@ -1,22 +0,0 @@ - - A Swift tool to run the catsn workflow - - - swift-catsn "$site" "$data" "$n" "$html_file.files_path" "$log_file" "$html_file" - - - - - - - - - - - - - - - - - Copied: SwiftApps/swift-galaxy/swift/postprocess.py (from rev 7528, SwiftApps/swift-galaxy/swift/swiftforeachrangepp.py) =================================================================== --- SwiftApps/swift-galaxy/swift/postprocess.py (rev 0) +++ SwiftApps/swift-galaxy/swift/postprocess.py 2014-01-30 23:20:58 UTC (rev 7529) @@ -0,0 +1,65 @@ +#post processing, set build for data and add additional data to history^M +from galaxy import datatypes, config, jobs, tools +from galaxy.model import HistoryDatasetAssociation +import operator +import shutil +import os +import glob +from os.path import basename + +def createDsRef(outDataItems, param_dict, outputName, outputFormat, outputDsRefName, nameSpace): + dsrefXML="\n" + dsrefXML=dsrefXML+"\n" + + dsrefFileName="" + + for outDataName, outDataItem in outDataItems: + if outDataName==outputDsRefName: + dsrefFileName=outDataItem.get_file_name() + else: + if outDataName==outputName: + dsrefXML=dsrefXML+"\n" % (outDataItem.id,outDataItem.name,outDataItem.get_file_name(),outputFormat) + + print "dsrefFileName:"+dsrefFileName + + primaryCollectedDatasets=param_dict["__collected_datasets__"]["primary"] + + for primaryCollectedDataset in primaryCollectedDatasets: + primaryCollectedDatasetItems=primaryCollectedDatasets[primaryCollectedDataset] + for primaryCollectedDatasetItem in primaryCollectedDatasetItems: + outDataItem=primaryCollectedDatasetItems[primaryCollectedDatasetItem] + if outputFormat in outDataItem.extension: + + dsrefXML=dsrefXML+"\n" % (outDataItem.id,outDataItem.name,outDataItem.get_file_name(),outDataItem.extension) + + dsrefXML=dsrefXML+"\n" + + return dsrefFileName, dsrefXML + +def writeDsRef(dsrefFileName, dsrefXML): + dsrefFile = open(dsrefFileName, "w", 0) + dsrefFile.write(dsrefXML) + dsrefFile.flush() + dsrefFile.close() + +def setSizeAndPeak(outDataItems,outputDsRefName): + for outDataName, outDataItem in outDataItems: + if outDataName==outputDsRefName: + outDataItem.dataset.file_size=None + outDataItem.set_size() + outDataItem.set_peek() + +def writeoutlist(app, inp_data, out_data, param_dict, tool, stdout, stderr): + + outDataItems = out_data.items() + outDataItems = sorted(outDataItems, key=operator.itemgetter(0)) + + dsrefAcmoFileName, dsrefAcmoXML = createDsRef(outDataItems,param_dict,"acmo","acmo.csv","acmoDsRef","facit/acmo") + + writeDsRef(dsrefAcmoFileName, dsrefAcmoXML) + + setSizeAndPeak(outDataItems,"acmoDsRef") + + + app.model.context.flush() + Deleted: SwiftApps/swift-galaxy/swift/swift-catsn =================================================================== --- SwiftApps/swift-galaxy/swift/swift-catsn 2014-01-30 15:26:30 UTC (rev 7528) +++ SwiftApps/swift-galaxy/swift/swift-catsn 2014-01-30 23:20:58 UTC (rev 7529) @@ -1,328 +0,0 @@ -#!/bin/bash - -#set -x -set -e - -site=$1 -data=$2 -n=$3 -outdir=$4 -logfile=$5 -htmlfile=$6 -mkdir -p $outdir - -swift=`which swift` -# use "here" document for configs - -cat << EOF > /tmp/catsn.swift -type file; - -app (file o) cat (file i) { - cat @i stdout=@o; -} -#file out[]; -file out[]; - -string d=@arg("data"); - -foreach j in [1:@toInt(@arg("n","1"))] { - file data; - out[j] = cat(data); -} -EOF - -case "$site" in -midway ) -cat << 'EOF' > /tmp/sites.xml - - - - - sandyb - 16 - 02:00:00 - 7500 - 100 - 100 - 2 - 1 - 1 - .31 - 10000 - /tmp/swift.work - - -EOF - -cat << 'EOF' > /tmp/tc -midway echo echo -midway cat cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=true -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; - -uc3 ) -cat << 'EOF' > /tmp/sites.xml - - - - - - .09 - 1000 - 1 - 3600 - 1 - 100 - 100 - 1 - UidDomain == "osg-gk.mwt2.org" - 1 - "group_friends.{env.USER}" - nonshared - - - /tmp/swift.work - - -EOF - -cat << 'EOF' > /tmp/tc -uc3 echo /bin/echo -uc3 cat /bin/cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=true -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; - -stampede ) -cat << 'EOF' > /tmp/sites.xml - - - - - - - - 16 - 16 - TG-STA110005S - normal - ketancmaheshwari at gmail.com - ALL - 02:00:00 - 8000 - 100 - 100 - 1 - 1 - 1 - .15 - 10000 - /tmp/swift.work - - -EOF - -cat << 'EOF' > /tmp/tc -stampede echo echo -stampede cat cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=true -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; - -localhost ) -cat << 'EOF' > /tmp/sites.xml - - - - - - - /tmp/swift.work - 0.31 - - -EOF - -cat << 'EOF' > /tmp/tc -localhost echo echo -localhost cat cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=false -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; - -* ) -echo "defaulting to localhost" - -cat << 'EOF' > /tmp/sites.xml - - - - - - - /tmp/swift.work - 0.31 - - -EOF - -cat << 'EOF' > /tmp/tc -localhost echo echo -localhost cat cat -EOF - -cat << 'EOF' > /tmp/cf -use.provider.staging=false -wrapperlog.always.transfer=true -execution.retries=1 -provider.staging.pin.swiftfiles=false -sitedir.keep=true -lazy.errors=false -EOF -;; -esac - -$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/catsn.swift -n=$n -data=$data 2> std.err -EXITCODE=$? - -swiftlog=`\ls -t *.log | head -1` - -#/tmp/plotswiftlogs $logfile 2>gnuplot.err -cat << 'EOF' > /tmp/plotswiftlogs -#!/bin/bash - -#usage: ./extract4plots - -SWIFTLOGFILE=$1 -#TMPDIR=`mktemp -d plotlog.XXX` -grep -i ProgressTicker $SWIFTLOGFILE > swiftoutfile.out -SWIFTOUTFILE=swiftoutfile.out -#extract start time -TMPDATE=`grep -i progress $SWIFTOUTFILE 2>/dev/null | head -n 1 | cut -f1-2 -d ' '` -START_TIME=`date +%s -d "$TMPDATE"` - -#extract end time -TMPDATE=`grep -i progress $SWIFTOUTFILE 2>/dev/null | tail -n 1 | cut -f1-2 -d ' '` -END_TIME=`date +%s -d "$TMPDATE"` - -#duration -DIFFTIME=$((END_TIME - START_TIME)) -#echo 0 > active.txt -#echo 0 > cumulative.txt -#extract active runs in a file -(grep -o -i "Active:[0-9]*" $SWIFTOUTFILE 2>/dev/null | awk -F: '{print $2}' > active.txt) - -#extract successful completions in a file -(grep -o -i "Successfully:[0-9]*" $SWIFTOUTFILE 2>/dev/null | awk -F: '{print $2}' > cumulative.txt) - -#prepare tics -activelines=`wc -l active.txt | awk '{print $1}'` -cumulines=`wc -l cumulative.txt | awk '{print $1}'` - -if [ $activelines -ne 0 ] -then - activelinespertic=`echo "scale=5 ; $DIFFTIME / $activelines" | bc` -fi -seq 0 $activelinespertic $DIFFTIME > activetics.txt - -if [ $cumulines -ne 0 ] -then - cumulinespertic=`echo "scale=5 ; $DIFFTIME / $cumulines" | bc` -fi - -seq 0 $cumulinespertic $DIFFTIME > cumultics.txt - -#final plot data -paste activetics.txt active.txt > plot_active.txt -paste cumultics.txt cumulative.txt > plot_cumulative.txt - -cat << EOF1 > plotit.gp -set terminal png enhanced -set output "activeplot.png" -set nokey -set xlabel "Time in sec" -set ylabel "number of active jobs" -set title "Active jobs" -plot "plot_active.txt" using 1:2 with line - -set output "cumulativeplot.png" -set ylabel "number of completed jobs" -set title "Cumulative jobs" -plot "plot_cumulative.txt" using 1:2 with lines -EOF1 - -gnuplot plotit.gp 2>/dev/null - -#cp *.png ../ -echo `pwd`>/tmp/curdir -echo `ls`>/tmp/dirlist -#cd .. -EOF - -sh /tmp/plotswiftlogs $swiftlog -cp *.png $outdir/ - -#for i in `find $outdir` -#do -# lastfile=$i -#done -#bname=`basename $lastfile` - -cat << EOF > $htmlfile - - - - - Catsn output - - -

Swift run trace plots

- -active plot -cumulative plot - -

Browse output of catsn application

-`for i in \`find $outdir -type f\`; do echo "Output: \`basename $i\`
"; done` - - -EOF - -if [ "$EXITCODE" -ne "0" ]; then - cat std.err >&2 -fi -cp std.err $logfile -rm std.err -exit $EXITCODE Copied: SwiftApps/swift-galaxy/swift/swift-catsn.sh (from rev 7523, SwiftApps/swift-galaxy/swift/swift-catsn) =================================================================== --- SwiftApps/swift-galaxy/swift/swift-catsn.sh (rev 0) +++ SwiftApps/swift-galaxy/swift/swift-catsn.sh 2014-01-30 23:20:58 UTC (rev 7529) @@ -0,0 +1,276 @@ +#!/bin/bash + +#set -x +set -e + +site=$1 +data=$2 +n=$3 +outdir=$4 +logfile=$5 +htmlfile=$6 +mkdir -p $outdir + +swift=`which swift` +# use "here" document for configs + +cat << EOF > /tmp/catsn.swift +type file; + +app (file o) cat (file i) { + cat @i stdout=@o; +} +#file out[]; +file out[]; + +string d=@arg("data"); + +foreach j in [1:@toInt(@arg("n","1"))] { + file data; + out[j] = cat(data); +} +EOF + +case "$site" in +midway ) +cat << 'EOF' > /tmp/sites.xml + + + + + sandyb + 16 + 02:00:00 + 7500 + 100 + 100 + 2 + 1 + 1 + .31 + 10000 + /tmp/swift.work + + +EOF +;; + +uc3 ) +cat << 'EOF' > /tmp/sites.xml + + + + + + .09 + 1000 + 1 + 3600 + 1 + 100 + 100 + 1 + UidDomain == "osg-gk.mwt2.org" + 1 + "group_friends.{env.USER}" + nonshared + + + /tmp/swift.work + + +EOF +;; + +stampede ) +cat << 'EOF' > /tmp/sites.xml + + + + + + 16 + 16 + TG-STA110005S + normal + ketancmaheshwari at gmail.com + ALL + 02:00:00 + 8000 + 100 + 100 + 1 + 1 + 1 + .15 + 10000 + /tmp/swift.work + + +EOF +;; + +localhost ) +cat << 'EOF' > /tmp/sites.xml + + + + + + + /tmp/swift.work + 0.31 + + +EOF +;; + +* ) +echo "defaulting to localhost" + +cat << 'EOF' > /tmp/sites.xml + + + + + + + /tmp/swift.work + 0.31 + + +EOF +;; +esac + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +stampede echo echo +stampede cat cat +uc3 echo /bin/echo +uc3 cat /bin/cat +midway echo echo +midway cat cat +EOF + +$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/catsn.swift -n=$n -data=$data 2> std.err +EXITCODE=$? + +swiftlog=`\ls -t *.log | head -1` + +#/tmp/plotswiftlogs $logfile 2>gnuplot.err +cat << 'EOF' > /tmp/plotswiftlogs +#!/bin/bash + +#usage: ./extract4plots + +SWIFTLOGFILE=$1 +#TMPDIR=`mktemp -d plotlog.XXX` +grep -i ProgressTicker $SWIFTLOGFILE > swiftoutfile.out +SWIFTOUTFILE=swiftoutfile.out +#extract start time +TMPDATE=`grep -i progress $SWIFTOUTFILE 2>/dev/null | head -n 1 | cut -f1-2 -d ' '` +START_TIME=`date +%s -d "$TMPDATE"` + +#extract end time +TMPDATE=`grep -i progress $SWIFTOUTFILE 2>/dev/null | tail -n 1 | cut -f1-2 -d ' '` +END_TIME=`date +%s -d "$TMPDATE"` + +#duration +DIFFTIME=$((END_TIME - START_TIME)) +#echo 0 > active.txt +#echo 0 > cumulative.txt +#extract active runs in a file +(grep -o -i "Active:[0-9]*" $SWIFTOUTFILE 2>/dev/null | awk -F: '{print $2}' > active.txt) + +#extract successful completions in a file +(grep -o -i "Successfully:[0-9]*" $SWIFTOUTFILE 2>/dev/null | awk -F: '{print $2}' > cumulative.txt) + +#prepare tics +activelines=`wc -l active.txt | awk '{print $1}'` +cumulines=`wc -l cumulative.txt | awk '{print $1}'` + +if [ $activelines -ne 0 ] +then + activelinespertic=`echo "scale=5 ; $DIFFTIME / $activelines" | bc` +fi +seq 0 $activelinespertic $DIFFTIME > activetics.txt + +if [ $cumulines -ne 0 ] +then + cumulinespertic=`echo "scale=5 ; $DIFFTIME / $cumulines" | bc` +fi + +seq 0 $cumulinespertic $DIFFTIME > cumultics.txt + +#final plot data +paste activetics.txt active.txt > plot_active.txt +paste cumultics.txt cumulative.txt > plot_cumulative.txt + +cat << EOF1 > plotit.gp +set terminal png enhanced +set output "activeplot.png" +set nokey +set xlabel "Time in sec" +set ylabel "number of active jobs" +set title "Active jobs" +plot "plot_active.txt" using 1:2 with line + +set output "cumulativeplot.png" +set ylabel "number of completed jobs" +set title "Cumulative jobs" +plot "plot_cumulative.txt" using 1:2 with lines +EOF1 + +gnuplot plotit.gp 2>/dev/null + +#cp *.png ../ +echo `pwd`>/tmp/curdir +echo `ls`>/tmp/dirlist +#cd .. +EOF + +sh /tmp/plotswiftlogs $swiftlog +cp *.png $outdir/ + +#for i in `find $outdir` +#do +# lastfile=$i +#done +#bname=`basename $lastfile` + +cat << EOF > $htmlfile + + + + + Catsn output + + +

Swift run trace plots

+ +active plot +cumulative plot + +

Browse output of catsn application

+`for i in \`find $outdir -type f\`; do echo "Output: \`basename $i\`
"; done` + + +EOF + +if [ "$EXITCODE" -ne "0" ]; then + cat std.err >&2 +fi +cp std.err $logfile +rm std.err +exit $EXITCODE Copied: SwiftApps/swift-galaxy/swift/swift-catsn.xml (from rev 7523, SwiftApps/swift-galaxy/swift/catsn.xml) =================================================================== --- SwiftApps/swift-galaxy/swift/swift-catsn.xml (rev 0) +++ SwiftApps/swift-galaxy/swift/swift-catsn.xml 2014-01-30 23:20:58 UTC (rev 7529) @@ -0,0 +1,22 @@ + + A Swift tool to run the catsn workflow + + + swift-catsn "$site" "$data" "$n" "$html_file.files_path" "$log_file" "$html_file" + + + + + + + + + + + + + + + + + Copied: SwiftApps/swift-galaxy/swift/swift-skeleton.xml (from rev 7523, SwiftApps/swift-galaxy/swift/catsn.xml) =================================================================== --- SwiftApps/swift-galaxy/swift/swift-skeleton.xml (rev 0) +++ SwiftApps/swift-galaxy/swift/swift-skeleton.xml 2014-01-30 23:20:58 UTC (rev 7529) @@ -0,0 +1,22 @@ + + A description here + + + swift-skeleton.sh "$site" "$data" "$n" "$html_file.files_path" "$log_file" "$html_file" + + + + + + + + + + + + + + + + + Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.sh =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachlist.sh 2014-01-30 15:26:30 UTC (rev 7528) +++ SwiftApps/swift-galaxy/swift/swiftforeachlist.sh 2014-01-30 23:20:58 UTC (rev 7529) @@ -16,6 +16,8 @@ listfile=$1 shift logfile=$1 +shift +outlistfile=$1 cat << EOF > /tmp/script.swift type file; @@ -60,12 +62,6 @@ EOF -cat << EOF > /tmp/tc -midway echo echo -midway sh /bin/sh -midway cat cat -EOF - ;; uc3 ) @@ -93,12 +89,6 @@ EOF -cat << EOF > /tmp/tc -uc3 sh /bin/sh -uc3 echo /bin/echo -uc3 cat /bin/cat -EOF - ;; stampede ) @@ -127,12 +117,6 @@ EOF -cat << EOF > /tmp/tc -stampede sh /bin/sh -stampede echo echo -stampede cat cat -EOF - ;; localhost ) @@ -148,11 +132,6 @@ EOF -cat << EOF > /tmp/tc -localhost sh /bin/sh -localhost echo echo -localhost cat cat -EOF ;; * ) @@ -169,12 +148,6 @@ EOF -cat << EOF > /tmp/tc -localhost sh /bin/sh -localhost echo echo -localhost cat cat -EOF - ;; esac @@ -187,9 +160,29 @@ lazy.errors=false EOF +cat << EOF > /tmp/tc +localhost sh /bin/sh +localhost echo echo +localhost cat cat +stampede sh /bin/sh +stampede echo echo +stampede cat cat +uc3 sh /bin/sh +uc3 echo /bin/echo +uc3 cat cat +midway echo echo +midway sh /bin/sh +midway cat cat +EOF + $swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/script.swift 2>$logfile EXITCODE=$? +#`for i in \`find $HOME/swift-sandbox -type f\`; do echo "\`basename $i\` $i"; done` +cat << EOF > $outlistfile +`for i in \`find $HOME/swift-sandbox -type f\`; do echo "$i"; done` +EOF + if [ "$EXITCODE" -ne "0" ]; then cat $logfile >&2 fi Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachlist.xml 2014-01-30 15:26:30 UTC (rev 7528) +++ SwiftApps/swift-galaxy/swift/swiftforeachlist.xml 2014-01-30 23:20:58 UTC (rev 7529) @@ -7,6 +7,7 @@ $executable $listfile $log_file + $outlist @@ -46,9 +47,10 @@ + - + .. class:: warningmark **TIP**. A generic Swift foreach to run arbitrary executables in parallel over a list of items listed in a file. Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.sh =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrange.sh 2014-01-30 15:26:30 UTC (rev 7528) +++ SwiftApps/swift-galaxy/swift/swiftforeachrange.sh 2014-01-30 23:20:58 UTC (rev 7529) @@ -20,6 +20,8 @@ stepsize=$1 shift logfile=$1 +shift +outlistfile=$1 cat << EOF > /tmp/script.swift type file; @@ -61,13 +63,6 @@ EOF - -cat << EOF > /tmp/tc -midway echo echo -midway sh /bin/sh -midway cat cat -EOF - ;; uc3 ) @@ -94,13 +89,6 @@ EOF - -cat << EOF > /tmp/tc -uc3 sh /bin/sh -uc3 echo /bin/echo -uc3 cat /bin/cat -EOF - ;; stampede ) @@ -128,13 +116,6 @@ EOF - -cat << EOF > /tmp/tc -stampede sh /bin/sh -stampede echo echo -stampede cat cat -EOF - ;; localhost ) @@ -150,11 +131,6 @@ EOF -cat << EOF > /tmp/tc -localhost sh /bin/sh -localhost echo echo -localhost cat cat -EOF ;; * ) @@ -171,12 +147,6 @@ EOF -cat << EOF > /tmp/tc -localhost sh /bin/sh -localhost echo echo -localhost cat cat -EOF - ;; esac @@ -189,9 +159,30 @@ lazy.errors=false EOF +cat << EOF > /tmp/tc +localhost sh /bin/sh +localhost echo echo +localhost cat cat +uc3 sh /bin/sh +uc3 echo /bin/echo +uc3 cat /bin/cat +stampede sh /bin/sh +stampede echo echo +stampede cat cat +midway echo echo +midway sh /bin/sh +midway cat cat +EOF + $swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/script.swift 2>$logfile EXITCODE=$? +#`for i in \`find $HOME/swift-sandbox -type f\`; do echo "\`basename $i\` $i"; done` +cat << EOF > $outlistfile +`for i in \`find $HOME/swift-sandbox -type f\`; do echo "$i"; done` +EOF + + if [ "$EXITCODE" -ne "0" ]; then cat $logfile >&2 fi Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrange.xml 2014-01-30 15:26:30 UTC (rev 7528) +++ SwiftApps/swift-galaxy/swift/swiftforeachrange.xml 2014-01-30 23:20:58 UTC (rev 7529) @@ -8,7 +8,8 @@ $rstart $rend $stepsize - $log_file + $logfile + $outlist @@ -49,12 +50,16 @@ - + + - - + + + .. class:: warningmark **TIP**. A generic Swift foreach to run arbitrary executables in parallel over a range of numbers. @@ -69,13 +74,13 @@ **Example** -Pick up an executable from the Executable list. Select the start, end and the step size values. +Pick up an executable from the Executable list. Enter the start, end and the step size values. If an executable is echo.sh: echo $1 -Start, end and step is 0, 9 and 2, the executable will be invoked in parallel 5 times for n where n is 0 2 4 6 8: +The start, end and step is 0, 9 and 2, the executable will be invoked in parallel 5 times for n where n is 0 2 4 6 8: echo n Deleted: SwiftApps/swift-galaxy/swift/swiftforeachrangepp.py =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrangepp.py 2014-01-30 15:26:30 UTC (rev 7528) +++ SwiftApps/swift-galaxy/swift/swiftforeachrangepp.py 2014-01-30 23:20:58 UTC (rev 7529) @@ -1,67 +0,0 @@ -#post processing, set build for data and add additional data to history^M -from galaxy import datatypes, config, jobs, tools -from galaxy.model import HistoryDatasetAssociation -import operator -import shutil -import os -import glob -from lxml import etree -from os.path import basename - -def createDsRef(outDataItems, param_dict, outputName, outputFormat, outputDsRefName, nameSpace): - dsrefXML="\n" - dsrefXML=dsrefXML+"\n" - - dsrefFileName="" - - for outDataName, outDataItem in outDataItems: - if outDataName==outputDsRefName: - dsrefFileName=outDataItem.get_file_name() - else: - if outDataName==outputName: - dsrefXML=dsrefXML+"\n" % (outDataItem.id,outDataItem.name,outDataItem.get_file_name(),outputFormat) - - print "dsrefFileName:"+dsrefFileName - - primaryCollectedDatasets=param_dict["__collected_datasets__"]["primary"] - - for primaryCollectedDataset in primaryCollectedDatasets: - primaryCollectedDatasetItems=primaryCollectedDatasets[primaryCollectedDataset] - for primaryCollectedDatasetItem in primaryCollectedDatasetItems: - outDataItem=primaryCollectedDatasetItems[primaryCollectedDatasetItem] - if outputFormat in outDataItem.extension: - - dsrefXML=dsrefXML+"\n" % (outDataItem.id,outDataItem.name,outDataItem.get_file_name(),outDataItem.extension) - - - dsrefXML=dsrefXML+"\n" - - return dsrefFileName, dsrefXML - -def writeDsRef(dsrefFileName, dsrefXML): - dsrefFile = open(dsrefFileName, "w",0) - dsrefFile.write(dsrefXML) - dsrefFile.flush() - dsrefFile.close() - -def setSizeAndPeak(outDataItems,outputDsRefName): - for outDataName, outDataItem in outDataItems: - if outDataName==outputDsRefName: - outDataItem.dataset.file_size=None - outDataItem.set_size() - outDataItem.set_peek() - -def exec_after_process(app, inp_data, out_data, param_dict, tool, stdout, stderr): - - outDataItems = out_data.items() - outDataItems = sorted(outDataItems, key=operator.itemgetter(0)) - - dsrefAcmoFileName, dsrefAcmoXML = createDsRef(outDataItems,param_dict,"acmo","acmo.csv","acmoDsRef","facit/acmo") - - writeDsRef(dsrefAcmoFileName, dsrefAcmoXML) - - setSizeAndPeak(outDataItems,"acmoDsRef") - - - app.model.context.flush() - From lgadelha at ci.uchicago.edu Thu Jan 30 17:29:44 2014 From: lgadelha at ci.uchicago.edu (lgadelha at ci.uchicago.edu) Date: Thu, 30 Jan 2014 17:29:44 -0600 (CST) Subject: [Swift-commit] r7530 - provenancedb Message-ID: <20140130232944.366899CCFD@svn.ci.uchicago.edu> Author: lgadelha Date: 2014-01-30 17:29:44 -0600 (Thu, 30 Jan 2014) New Revision: 7530 Modified: provenancedb/prepare-provenance-chart provenancedb/prov-init.sql provenancedb/prov-to-sql.sh Log: Gathering staged-in and staged-out files Added some views for queries about file staging Modified: provenancedb/prepare-provenance-chart =================================================================== --- provenancedb/prepare-provenance-chart 2014-01-30 23:20:58 UTC (rev 7529) +++ provenancedb/prepare-provenance-chart 2014-01-30 23:29:44 UTC (rev 7530) @@ -14,6 +14,8 @@ cat $1 | grep ' CREATEARRAY MEMBER ' | sed 's/^.* array=\([^ ]*\) index=\([^ ]*\) member=\([^ ]*\).*$/\1 \2 \3/' > createarray-members.txt cat $1 | grep ' ARRAYRANGE ' | sed 's/^.* thread=\([^ ]*\).*$/\1/' > arrayrange.txt cat $1 | grep ' SCOPE ' | sed 's/^.* thread=\([^ ]*\).*/\1/' > scopes.txt +cat $1 | grep ' FILE_STAGE_OUT_START ' | sed "s/^.* srcname=\([^ ]*\).*desthost=\([^ ]*\).*jobid=\([^ ]*\).*\$/\1 \2 \3/" > stage-outs.txt +cat $1 | grep ' Staging in files ' | sed "s/^.* jobid=\([^ ]*\).*Staging in files \([^$]*\).*\$/\1 \2/" > stage-ins.txt awk '/BEGIN SWIFTSCRIPT/,/END SWIFTSCRIPT/{if (!/BEGIN SWIFTSCRIPT/&&!/END SWIFTSCRIPT/)print}' $1 > script.txt awk '/BEGIN SITES/,/END SITES/{if (!/BEGIN SITES/&&!/END SITES/)print}' $1 > sites.txt awk '/BEGIN TC/,/END TC/{if (!/BEGIN TC/&&!/END TC/)print}' $1 > tc.txt Modified: provenancedb/prov-init.sql =================================================================== --- provenancedb/prov-init.sql 2014-01-30 23:20:58 UTC (rev 7529) +++ provenancedb/prov-init.sql 2014-01-30 23:29:44 UTC (rev 7530) @@ -30,6 +30,8 @@ drop table primitive cascade; drop table dataset_containment cascade; drop table ds cascade; +drop table stage_in; +drop table stage_out; drop view script_and_fun_call; drop view script_to_app_fun_call; drop view script_to_app_exec; @@ -161,6 +163,18 @@ exit_status numeric ); +create table stage_in ( + app_exec_id varchar(256) references app_exec (id), + filename varchar(1024), + primary key (app_exec_id, filename) +); + +create table stage_out ( + app_exec_id varchar(256) references app_exec (id), + filename varchar(1024), + primary key (app_exec_id, filename) +); + create view application_execution as select id, app_fun_call_id as function_call_id, to_timestamp(start_time) as start_time, duration, final_state, site from app_exec; @@ -500,4 +514,37 @@ select script_run_id, script_filename, input_dataset_id, input_dataset_type, input_parameter_name, input_dataset_value, input_dataset_filename, function_call_id, function_call_type, function_call_name, output_dataset_id, output_parameter_name, output_dataset_type, output_dataset_value, output_dataset_filename -from provenance_all; \ No newline at end of file +from provenance_all; + +create view app_exec_stage_in as +select filename as staged_in_filename, id as app_exec_id, app_fun_call_id, start_time as app_exec_start_time, duration as app_exec_duration, + final_state as app_exec_final_state , site as app_exec_site, real_secs as app_exec_real_secs, kernel_secs as app_exec_kernel_secs, + user_secs as app_exec_user_secs, percent_cpu as app_exec_percent_cpu, max_rss as app_exec_max_rss, avg_rss as app_exec_avg_rss, + avg_tot_vm as app_exec_avg_tot_vm, avg_priv_data as app_exec_avg_priv_data, avg_priv_stack as app_exec_avg_priv_stack, + avg_shared_text as app_exec_avg_shared_text, page_size as app_exec_page_size, major_pgfaults as app_exec_major_pgfaults, + minor_pgfaults as app_exec_minor_pgfaults, swaps as app_exec_swaps, invol_context_switches as app_exec_invol_context_switches, + vol_waits as app_exec_vol_waits, fs_reads as app_exec_fs_reads, fs_writes as app_exec_fs_writes, sock_recv as app_exec_sock_recv, + sock_send as app_exec_sock_send, signals as app_exec_signals, exit_status as app_exec_exit_status +from stage_in,app_exec where stage_in.app_exec_id=app_exec.id; + +create view app_exec_stage_out as +select filename as staged_in_filename, id as app_exec_id, app_fun_call_id, start_time as app_exec_start_time, duration as app_exec_duration, + final_state as app_exec_final_state , site as app_exec_site, real_secs as app_exec_real_secs, kernel_secs as app_exec_kernel_secs, + user_secs as app_exec_user_secs, percent_cpu as app_exec_percent_cpu, max_rss as app_exec_max_rss, avg_rss as app_exec_avg_rss, + avg_tot_vm as app_exec_avg_tot_vm, avg_priv_data as app_exec_avg_priv_data, avg_priv_stack as app_exec_avg_priv_stack, + avg_shared_text as app_exec_avg_shared_text, page_size as app_exec_page_size, major_pgfaults as app_exec_major_pgfaults, + minor_pgfaults as app_exec_minor_pgfaults, swaps as app_exec_swaps, invol_context_switches as app_exec_invol_context_switches, + vol_waits as app_exec_vol_waits, fs_reads as app_exec_fs_reads, fs_writes as app_exec_fs_writes, sock_recv as app_exec_sock_recv, + sock_send as app_exec_sock_send, signals as app_exec_signals, exit_status as app_exec_exit_status +from stage_out,app_exec where stage_in.app_exec_id=app_exec.id; + +create view app_exec_staging as +select stage_in.filename as staged_in_filename, id as app_exec_id, app_fun_call_id, start_time as app_exec_start_time, duration as app_exec_duration, + final_state as app_exec_final_state , site as app_exec_site, real_secs as app_exec_real_secs, kernel_secs as app_exec_kernel_secs, + user_secs as app_exec_user_secs, percent_cpu as app_exec_percent_cpu, max_rss as app_exec_max_rss, avg_rss as app_exec_avg_rss, + avg_tot_vm as app_exec_avg_tot_vm, avg_priv_data as app_exec_avg_priv_data, avg_priv_stack as app_exec_avg_priv_stack, + avg_shared_text as app_exec_avg_shared_text, page_size as app_exec_page_size, major_pgfaults as app_exec_major_pgfaults, + minor_pgfaults as app_exec_minor_pgfaults, swaps as app_exec_swaps, invol_context_switches as app_exec_invol_context_switches, + vol_waits as app_exec_vol_waits, fs_reads as app_exec_fs_reads, fs_writes as app_exec_fs_writes, sock_recv as app_exec_sock_recv, + sock_send as app_exec_sock_send, signals as app_exec_signals, exit_status as app_exec_exit_status stage_out.filename as staged_out_filename +from stage_out,app_exec,stage_in where stage_in.app_exec_id=app_exec.id and app_exec.id=stage_out.app_exec_id; Modified: provenancedb/prov-to-sql.sh =================================================================== --- provenancedb/prov-to-sql.sh 2014-01-30 23:20:58 UTC (rev 7529) +++ provenancedb/prov-to-sql.sh 2014-01-30 23:29:44 UTC (rev 7530) @@ -131,7 +131,14 @@ echo "INSERT INTO $table (function_call_id, dataset_id, parameter) VALUES ('$thread', '$dataset', '$variable');" >> /tmp/$RUNID.sql done < tie-data-invocs.txt +#echo " - Dataset stage-ins and stage-outs." +#while read filename execute; do +# thread=$(grep $execute execute2.event | cut -f 5 -d " ") +# dataset_id=$(grep "$thread " tie-data-invocs.txt | grep output | cut -f 3 -d " ") +# echo "INSERT INTO mapped values ('$dataset_id', '$filename');" >> /tmp/$RUNID.sql +#done < stage-outs.txt + echo " - Wrapper log resource consumption info." if [ -f runtime.txt ]; then while read execute2_id runtime; do @@ -192,6 +199,21 @@ done < extrainfo.txt fi +echo " - Stage ins and stage outs." +while read execute2_id stage_in; do + app_exec_id=$WFID$execute2_id + for isid in $(echo $stage_in); do + filename=$(echo $isid | sed "s/^\[//" | sed "s/\,$//" | sed "s/\]$//" | sed "s/\/\.\//\//g"); + echo "INSERT INTO stage_in VALUES ('$app_exec_id', '$filename');" >> /tmp/$RUNID.sql + done; +done < stage-ins.txt + +while read stage_out desthost execute2_id; do + app_exec_id=$WFID$execute2_id + filename="filename://"$desthost"/"$(echo $stage_out | sed "s/\/\.\//\//g"); + echo "INSERT INTO stage_out VALUES ('$app_exec_id', '$filename');" >> /tmp/$RUNID.sql +done < stage-outs.txt + echo " - Prospective provenance (script, tc, sites)." script_hash=$(openssl dgst -sha1 script.txt | awk '{ print $2 }') EXISTING=$($SQLCMD --tuples-only -c "select count(*) from script where hash_value='$script_hash';") @@ -221,7 +243,6 @@ echo "UPDATE run SET sites_file_hash='$sites_hash' WHERE id='$WF';" >> /tmp/$RUNID.sql - echo "Finished SQL generation." echo "Exporting provenance to database..." $SQLCMD -f /tmp/$RUNID.sql 1> /dev/null 2> /tmp/$RUNID-provenancedb-error.log From lgadelha at ci.uchicago.edu Thu Jan 30 17:35:08 2014 From: lgadelha at ci.uchicago.edu (lgadelha at ci.uchicago.edu) Date: Thu, 30 Jan 2014 17:35:08 -0600 (CST) Subject: [Swift-commit] r7531 - provenancedb Message-ID: <20140130233508.C41309CCFD@svn.ci.uchicago.edu> Author: lgadelha Date: 2014-01-30 17:35:08 -0600 (Thu, 30 Jan 2014) New Revision: 7531 Modified: provenancedb/prov-init.sql Log: Minor fix Modified: provenancedb/prov-init.sql =================================================================== --- provenancedb/prov-init.sql 2014-01-30 23:29:44 UTC (rev 7530) +++ provenancedb/prov-init.sql 2014-01-30 23:35:08 UTC (rev 7531) @@ -546,5 +546,10 @@ avg_shared_text as app_exec_avg_shared_text, page_size as app_exec_page_size, major_pgfaults as app_exec_major_pgfaults, minor_pgfaults as app_exec_minor_pgfaults, swaps as app_exec_swaps, invol_context_switches as app_exec_invol_context_switches, vol_waits as app_exec_vol_waits, fs_reads as app_exec_fs_reads, fs_writes as app_exec_fs_writes, sock_recv as app_exec_sock_recv, - sock_send as app_exec_sock_send, signals as app_exec_signals, exit_status as app_exec_exit_status stage_out.filename as staged_out_filename + sock_send as app_exec_sock_send, signals as app_exec_signals, exit_status as app_exec_exit_status, stage_out.filename as staged_out_filename from stage_out,app_exec,stage_in where stage_in.app_exec_id=app_exec.id and app_exec.id=stage_out.app_exec_id; + +create view app_exec_staging_all as +select run_id as script_run_id, fun_call.name as app_fun_call_name, app_exec_staging.* +from fun_call, app_exec_staging +where fun_call.id=app_exec_staging.app_fun_call_id; \ No newline at end of file From ketan at ci.uchicago.edu Thu Jan 30 20:03:11 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Thu, 30 Jan 2014 20:03:11 -0600 (CST) Subject: [Swift-commit] r7532 - SwiftApps/swift-galaxy/swift Message-ID: <20140131020311.605439CCFD@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-30 20:03:11 -0600 (Thu, 30 Jan 2014) New Revision: 7532 Added: SwiftApps/swift-galaxy/swift/swift-skeleton.sh Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.sh SwiftApps/swift-galaxy/swift/swiftforeachlist.xml SwiftApps/swift-galaxy/swift/swiftforeachrange.sh SwiftApps/swift-galaxy/swift/swiftforeachrange.xml Log: user controlled outdir Added: SwiftApps/swift-galaxy/swift/swift-skeleton.sh =================================================================== --- SwiftApps/swift-galaxy/swift/swift-skeleton.sh (rev 0) +++ SwiftApps/swift-galaxy/swift/swift-skeleton.sh 2014-01-31 02:03:11 UTC (rev 7532) @@ -0,0 +1,187 @@ +#!/bin/bash + +#set -x +set -e + +site=$1 +data=$2 +n=$3 +outdir=$4 +logfile=$5 +htmlfile=$6 +mkdir -p $outdir + +swift=`which swift` +# use "here" document for configs + +cat << EOF > /tmp/script.swift +### <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< +# Place your Swift script here +# Make sure all data references are full-path +### <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< +EOF + +case "$site" in +midway ) +cat << 'EOF' > /tmp/sites.xml + + + + + sandyb + 16 + 02:00:00 + 7500 + 100 + 100 + 2 + 1 + 1 + .31 + 10000 + /tmp/swift.work + + +EOF +;; + +uc3 ) +cat << 'EOF' > /tmp/sites.xml + + + + + + .09 + 1000 + 1 + 3600 + 1 + 100 + 100 + 1 + UidDomain == "osg-gk.mwt2.org" + 1 + "group_friends.{env.USER}" + nonshared + + + /tmp/swift.work + + +EOF +;; + +stampede ) +cat << 'EOF' > /tmp/sites.xml + + + + + + 16 + 16 + TG-STA110005S + normal + ketancmaheshwari at gmail.com + ALL + 02:00:00 + 8000 + 100 + 100 + 1 + 1 + 1 + .15 + 10000 + /tmp/swift.work + + +EOF +;; + +localhost ) +cat << 'EOF' > /tmp/sites.xml + + + + + + + /tmp/swift.work + 0.31 + + +EOF +;; + +* ) +echo "defaulting to localhost" + +cat << 'EOF' > /tmp/sites.xml + + + + + + + /tmp/swift.work + 0.31 + + +EOF +;; +esac + +cat << 'EOF' > /tmp/cf +use.provider.staging=true +wrapperlog.always.transfer=true +execution.retries=1 +provider.staging.pin.swiftfiles=false +sitedir.keep=true +lazy.errors=false +EOF + +cat << 'EOF' > /tmp/tc +localhost echo echo +localhost cat cat +stampede echo echo +stampede cat cat +uc3 echo echo +uc3 cat cat +midway echo echo +midway cat cat +EOF + +$swift -sites.file /tmp/sites.xml -tc.file /tmp/tc -config /tmp/cf /tmp/catsn.swift -n=$n -data=$data 2> $logfile +EXITCODE=$? + +#for i in `find $outdir` +#do +# lastfile=$i +#done +#bname=`basename $lastfile` + +cat << EOF > $htmlfile + + + + + Catsn output + + +

Swift run trace plots

+ +active plot +cumulative plot + +

Browse output of catsn application

+`for i in \`find $outdir -type f\`; do echo "Output: \`basename $i\`
"; done` + + +EOF + +if [ "$EXITCODE" -ne "0" ]; then + cat $logfile >&2 +fi +exit $EXITCODE Property changes on: SwiftApps/swift-galaxy/swift/swift-skeleton.sh ___________________________________________________________________ Added: svn:executable + * Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.sh =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachlist.sh 2014-01-30 23:35:08 UTC (rev 7531) +++ SwiftApps/swift-galaxy/swift/swiftforeachlist.sh 2014-01-31 02:03:11 UTC (rev 7532) @@ -15,6 +15,8 @@ shift listfile=$1 shift +outloc=$1 +shift logfile=$1 shift outlistfile=$1 @@ -30,8 +32,8 @@ file listfile<"$listfile">; string list[] = readData(listfile); foreach l, i in list{ - file out ; - file err ; + file out ; + file err ; (out,err) = anapp(exec, l); } EOF Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachlist.xml 2014-01-30 23:35:08 UTC (rev 7531) +++ SwiftApps/swift-galaxy/swift/swiftforeachlist.xml 2014-01-31 02:03:11 UTC (rev 7532) @@ -6,6 +6,7 @@ $site $executable $listfile + $outloc $log_file $outlist @@ -20,6 +21,7 @@ + Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.sh =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrange.sh 2014-01-30 23:35:08 UTC (rev 7531) +++ SwiftApps/swift-galaxy/swift/swiftforeachrange.sh 2014-01-31 02:03:11 UTC (rev 7532) @@ -32,8 +32,8 @@ file exec<"$executable">; foreach i in [$rstart:$rend:$stepsize]{ - file out ; - file err ; + file out ; + file err ; (out,err) = anapp(exec, i); } EOF Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrange.xml 2014-01-30 23:35:08 UTC (rev 7531) +++ SwiftApps/swift-galaxy/swift/swiftforeachrange.xml 2014-01-31 02:03:11 UTC (rev 7532) @@ -8,6 +8,7 @@ $rstart $rend $stepsize + $outloc $logfile $outlist @@ -26,6 +27,8 @@ + + From ketan at ci.uchicago.edu Thu Jan 30 20:19:44 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Thu, 30 Jan 2014 20:19:44 -0600 (CST) Subject: [Swift-commit] r7533 - SwiftApps/swift-galaxy/swift Message-ID: <20140131021944.93CBE9CCFD@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-30 20:19:44 -0600 (Thu, 30 Jan 2014) New Revision: 7533 Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.sh Log: small fix Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.sh =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrange.sh 2014-01-31 02:03:11 UTC (rev 7532) +++ SwiftApps/swift-galaxy/swift/swiftforeachrange.sh 2014-01-31 02:19:44 UTC (rev 7533) @@ -19,9 +19,11 @@ shift stepsize=$1 shift -logfile=$1 +outloc=$1 shift outlistfile=$1 +shift +logfile=$1 cat << EOF > /tmp/script.swift type file; @@ -32,8 +34,8 @@ file exec<"$executable">; foreach i in [$rstart:$rend:$stepsize]{ - file out ; - file err ; + file out ; + file err ; (out,err) = anapp(exec, i); } EOF From ketan at ci.uchicago.edu Thu Jan 30 21:12:12 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Thu, 30 Jan 2014 21:12:12 -0600 (CST) Subject: [Swift-commit] r7534 - SwiftApps/swift-galaxy/swift Message-ID: <20140131031212.36B739CCFD@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-30 21:12:12 -0600 (Thu, 30 Jan 2014) New Revision: 7534 Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.sh SwiftApps/swift-galaxy/swift/swiftforeachrange.sh Log: _ Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.sh =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachlist.sh 2014-01-31 02:19:44 UTC (rev 7533) +++ SwiftApps/swift-galaxy/swift/swiftforeachlist.sh 2014-01-31 03:12:12 UTC (rev 7534) @@ -182,7 +182,7 @@ #`for i in \`find $HOME/swift-sandbox -type f\`; do echo "\`basename $i\` $i"; done` cat << EOF > $outlistfile -`for i in \`find $HOME/swift-sandbox -type f\`; do echo "$i"; done` +`for i in \`find $outloc -type f\`; do echo "$i"; done` EOF if [ "$EXITCODE" -ne "0" ]; then Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.sh =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrange.sh 2014-01-31 02:19:44 UTC (rev 7533) +++ SwiftApps/swift-galaxy/swift/swiftforeachrange.sh 2014-01-31 03:12:12 UTC (rev 7534) @@ -181,7 +181,7 @@ #`for i in \`find $HOME/swift-sandbox -type f\`; do echo "\`basename $i\` $i"; done` cat << EOF > $outlistfile -`for i in \`find $HOME/swift-sandbox -type f\`; do echo "$i"; done` +`for i in \`find $outloc -type f\`; do echo "$i"; done` EOF From hategan at ci.uchicago.edu Thu Jan 30 21:38:40 2014 From: hategan at ci.uchicago.edu (hategan at ci.uchicago.edu) Date: Thu, 30 Jan 2014 21:38:40 -0600 (CST) Subject: [Swift-commit] r7535 - trunk/src/org/griphyn/vdl/karajan/lib Message-ID: <20140131033840.D4B039CCFD@svn.ci.uchicago.edu> Author: hategan Date: 2014-01-30 21:38:40 -0600 (Thu, 30 Jan 2014) New Revision: 7535 Modified: trunk/src/org/griphyn/vdl/karajan/lib/ExpandArguments.java Log: removed unused comparator Modified: trunk/src/org/griphyn/vdl/karajan/lib/ExpandArguments.java =================================================================== --- trunk/src/org/griphyn/vdl/karajan/lib/ExpandArguments.java 2014-01-31 03:12:12 UTC (rev 7534) +++ trunk/src/org/griphyn/vdl/karajan/lib/ExpandArguments.java 2014-01-31 03:38:40 UTC (rev 7535) @@ -18,7 +18,6 @@ package org.griphyn.vdl.karajan.lib; import java.util.ArrayList; -import java.util.Comparator; import java.util.Map; import java.util.SortedMap; import java.util.TreeMap; @@ -92,13 +91,5 @@ } return arraySeen; } - - class StringsAsIntegersComparator implements Comparator { - public int compare(Object l, Object r) { - Integer lnum = new Integer((String)l); - Integer rnum = new Integer((String)r); - return lnum.compareTo(rnum); - } - } } From swift at ci.uchicago.edu Thu Jan 30 21:40:05 2014 From: swift at ci.uchicago.edu (swift at ci.uchicago.edu) Date: Thu, 30 Jan 2014 21:40:05 -0600 (CST) Subject: [Swift-commit] cog r3866 Message-ID: <20140131034006.0457B8D000A6@bridled.ci.uchicago.edu> ------------------------------------------------------------------------ r3866 | hategan | 2014-01-30 21:36:47 -0600 (Thu, 30 Jan 2014) | 1 line don't instantiate possibly unnecessary integers ------------------------------------------------------------------------ Index: modules/karajan/src/org/globus/cog/karajan/util/TypeUtil.java =================================================================== --- modules/karajan/src/org/globus/cog/karajan/util/TypeUtil.java (revision 3865) +++ modules/karajan/src/org/globus/cog/karajan/util/TypeUtil.java (working copy) @@ -232,7 +232,7 @@ } public static Integer toInteger(final Object obj) { - return new Integer(toInt(obj)); + return Integer.valueOf(toInt(obj)); } public static final String[] EMPTY_STRING_ARRAY = new String[0]; From hategan at ci.uchicago.edu Thu Jan 30 21:40:28 2014 From: hategan at ci.uchicago.edu (hategan at ci.uchicago.edu) Date: Thu, 30 Jan 2014 21:40:28 -0600 (CST) Subject: [Swift-commit] r7536 - in trunk/src/org/griphyn/vdl: engine karajan/lib Message-ID: <20140131034028.918199CCFD@svn.ci.uchicago.edu> Author: hategan Date: 2014-01-30 21:40:28 -0600 (Thu, 30 Jan 2014) New Revision: 7536 Modified: trunk/src/org/griphyn/vdl/engine/Karajan.java trunk/src/org/griphyn/vdl/karajan/lib/Range.java trunk/src/org/griphyn/vdl/karajan/lib/SwiftFunction.java Log: use Integer.valueOf instead of new Integer since it caches commonly used values Modified: trunk/src/org/griphyn/vdl/engine/Karajan.java =================================================================== --- trunk/src/org/griphyn/vdl/engine/Karajan.java 2014-01-31 03:38:40 UTC (rev 7535) +++ trunk/src/org/griphyn/vdl/engine/Karajan.java 2014-01-31 03:40:28 UTC (rev 7536) @@ -1397,7 +1397,7 @@ } else if (expressionQName.equals(INT_EXPR)) { XmlInt xmlInt = (XmlInt) expression; int i = xmlInt.getIntValue(); - Integer iobj = new Integer(i); + Integer iobj = Integer.valueOf(i); String internedID; if(intInternMap.get(iobj) == null) { internedID = "swift#int#" + i; Modified: trunk/src/org/griphyn/vdl/karajan/lib/Range.java =================================================================== --- trunk/src/org/griphyn/vdl/karajan/lib/Range.java 2014-01-31 03:38:40 UTC (rev 7535) +++ trunk/src/org/griphyn/vdl/karajan/lib/Range.java 2014-01-31 03:40:28 UTC (rev 7536) @@ -113,10 +113,10 @@ { if (type == Types.INT) { - value = new RootDataNode(Types.INT, new Integer((int) crt)); + value = new RootDataNode(Types.INT, (int) crt); } else { - value = new RootDataNode(Types.FLOAT, new Double(crt)); + value = new RootDataNode(Types.FLOAT, Double.valueOf(crt)); } key = index; } Modified: trunk/src/org/griphyn/vdl/karajan/lib/SwiftFunction.java =================================================================== --- trunk/src/org/griphyn/vdl/karajan/lib/SwiftFunction.java 2014-01-31 03:38:40 UTC (rev 7535) +++ trunk/src/org/griphyn/vdl/karajan/lib/SwiftFunction.java 2014-01-31 03:40:28 UTC (rev 7536) @@ -147,10 +147,10 @@ protected Object internalValue(Type type, Object value) { if (Types.FLOAT.equals(type)) { - return new Double(TypeUtil.toDouble(value)); + return Double.valueOf(TypeUtil.toDouble(value)); } else if (Types.INT.equals(type)) { - return new Integer(TypeUtil.toInt(value)); + return Integer.valueOf(TypeUtil.toInt(value)); } else if (Types.BOOLEAN.equals(type)) { return new Boolean(TypeUtil.toBoolean(value)); From ketan at ci.uchicago.edu Fri Jan 31 09:55:27 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Fri, 31 Jan 2014 09:55:27 -0600 (CST) Subject: [Swift-commit] r7537 - SwiftApps/swift-galaxy/swift Message-ID: <20140131155527.22A489CCFD@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-31 09:55:26 -0600 (Fri, 31 Jan 2014) New Revision: 7537 Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.sh SwiftApps/swift-galaxy/swift/swiftforeachrange.sh Log: improve sites Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.sh =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachlist.sh 2014-01-31 03:40:28 UTC (rev 7536) +++ SwiftApps/swift-galaxy/swift/swiftforeachlist.sh 2014-01-31 15:55:26 UTC (rev 7537) @@ -123,13 +123,14 @@ localhost ) cat << EOF > /tmp/sites.xml - + - - - - /tmp/swift.work - 0.31 + + 0.07 + 10000 + + /tmp/swift.work + local EOF @@ -139,14 +140,15 @@ * ) echo "defaulting to localhost" cat << EOF > /tmp/sites.xml - + - - - - /tmp/swift.work - 0.31 - + + 0.07 + 10000 + + /tmp/swift.work + local + EOF Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.sh =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrange.sh 2014-01-31 03:40:28 UTC (rev 7536) +++ SwiftApps/swift-galaxy/swift/swiftforeachrange.sh 2014-01-31 15:55:26 UTC (rev 7537) @@ -122,13 +122,14 @@ localhost ) cat << EOF > /tmp/sites.xml - + - - - - /tmp/swift.work - 0.31 + + 0.07 + 10000 + + /tmp/swift.work + local EOF @@ -138,14 +139,15 @@ * ) echo "defaulting to localhost" cat << EOF > /tmp/sites.xml - + - - - - /tmp/swift.work - 0.31 - + + 0.07 + 10000 + + /tmp/swift.work + local + EOF From ketan at ci.uchicago.edu Fri Jan 31 14:29:31 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Fri, 31 Jan 2014 14:29:31 -0600 (CST) Subject: [Swift-commit] r7538 - SwiftApps/swift-galaxy/swift Message-ID: <20140131202931.88A139CCA7@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-31 14:29:31 -0600 (Fri, 31 Jan 2014) New Revision: 7538 Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.xml SwiftApps/swift-galaxy/swift/swiftforeachrange.xml Log: Galaxy does not like env vars Modified: SwiftApps/swift-galaxy/swift/swiftforeachlist.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachlist.xml 2014-01-31 15:55:26 UTC (rev 7537) +++ SwiftApps/swift-galaxy/swift/swiftforeachlist.xml 2014-01-31 20:29:31 UTC (rev 7538) @@ -21,7 +21,7 @@ - + Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrange.xml 2014-01-31 15:55:26 UTC (rev 7537) +++ SwiftApps/swift-galaxy/swift/swiftforeachrange.xml 2014-01-31 20:29:31 UTC (rev 7538) @@ -27,7 +27,7 @@ - + From ketan at ci.uchicago.edu Fri Jan 31 23:23:42 2014 From: ketan at ci.uchicago.edu (ketan at ci.uchicago.edu) Date: Fri, 31 Jan 2014 23:23:42 -0600 (CST) Subject: [Swift-commit] r7539 - in SwiftApps/swift-galaxy: . swift Message-ID: <20140201052342.8909B9CCFD@svn.ci.uchicago.edu> Author: ketan Date: 2014-01-31 23:23:42 -0600 (Fri, 31 Jan 2014) New Revision: 7539 Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.xml SwiftApps/swift-galaxy/tool_conf.xml Log: new execbin type Modified: SwiftApps/swift-galaxy/swift/swiftforeachrange.xml =================================================================== --- SwiftApps/swift-galaxy/swift/swiftforeachrange.xml 2014-01-31 20:29:31 UTC (rev 7538) +++ SwiftApps/swift-galaxy/swift/swiftforeachrange.xml 2014-02-01 05:23:42 UTC (rev 7539) @@ -21,7 +21,7 @@ - + Modified: SwiftApps/swift-galaxy/tool_conf.xml =================================================================== --- SwiftApps/swift-galaxy/tool_conf.xml 2014-01-31 20:29:31 UTC (rev 7538) +++ SwiftApps/swift-galaxy/tool_conf.xml 2014-02-01 05:23:42 UTC (rev 7539) @@ -9,12 +9,14 @@ +