[Swift-commit] r3093 - SwiftApps/SIDGrid/swift/projects/andric/ccf_emblem/NonParametric_lag_analy

[noreply at svn.ci.uchicago.edu]

Author: andric
Date: 2009-08-10 09:23:57 -0500 (Mon, 10 Aug 2009)
New Revision: 3093

Modified:
   SwiftApps/SIDGrid/swift/projects/andric/ccf_emblem/NonParametric_lag_analy/surfclust.swift
Log:
now looping through rmm val

Modified: SwiftApps/SIDGrid/swift/projects/andric/ccf_emblem/NonParametric_lag_analy/surfclust.swift
===================================================================
--- SwiftApps/SIDGrid/swift/projects/andric/ccf_emblem/NonParametric_lag_analy/surfclust.swift	2009-08-10 14:22:56 UTC (rev 3092)
+++ SwiftApps/SIDGrid/swift/projects/andric/ccf_emblem/NonParametric_lag_analy/surfclust.swift	2009-08-10 14:23:57 UTC (rev 3093)
@@ -1,8 +1,10 @@
+# coded Tuesday; July 22, 2008
+# this version also loops the rmm value
 type file{}
 
-(file surfclustOutput[]) SurfClust (file specFile, file surfFile, file input, float threshVal, string prefix){
+(file surfclustOutput[]) SurfClust (file specFile, file surfFile, file input, float threshVal, float rmmVal, string prefix){
     app {
-        SurfClust "-spec" @filename(specFile) "-surf_A" @filename(surfFile) "-input" @filename(input) "1 -rmm 2.8 -thresh_col 1 -thresh" threshVal "-amm2 2 -sort_n_nodes -out_clusterdset -out_roidset -prepend_node_index -out_fulllist -prefix" prefix;
+        SurfClust "-spec" @filename(specFile) "-surf_A" @filename(surfFile) "-input" @filename(input) "1" "-rmm" rmmVal "-thresh_col" "1" "-thresh" threshVal "-amm2" "2" "-sort_n_nodes" "-out_clusterdset" "-out_roidset" "-prepend_node_index" "-out_fulllist" "-prefix" prefix;
     }
 }
 
@@ -10,20 +12,23 @@
 string SeedRegions = ["IDEAL"];
 string hemis = ["lh","rh"];
 int vertexThresh[] = [6,9];
+float rmm_vals = [2.1,2.2];
 
 foreach seed in SeedRegions{
     foreach h in hemis{
         foreach thresh in vertexThresh{
-            file HORRYspec <single_file_mapper;file=@strcat("HORRY.",h,".mesh140_std.spec")>;
-            file HORRYsurf <single_file_mapper;file=@strcat("HORRY.",h,".mesh140_std.pial.asc")>;
-            file inputFile <single_file_mapper;file=@strcat("results/",h,"_",seed,"_new_sorted.txt")>;
-            string outPrefix=@strcat(h,"_",seed,"_Thresh",thresh);
-            string vals_name = @strcat(outPrefix,"_Clustered_r2.8_a2.0.niml.dset, ");
-            string msk_name = @strcat(outPrefix,"_ClstMsk_r2.8_a2.0.niml.dset, ");
-            string table_name = @strcat(outPrefix,"_ClstTable_r2.8_a2.0.1D");
-            string out_files = @strcat(vals_name, msk_name, table_name);
-            file surfclustOutput[] <fixed_array_mapper;files=out_files>;
-            (surfclustOutput) = SurfClust(HORRYspec,HORRYsurf,inputFile,thresh,outPrefix);
+            foreach rmm in rmm_vals{
+                file HORRYspec <single_file_mapper;file=@strcat("HORRY.",h,".mesh140_std.spec")>;
+                file HORRYsurf <single_file_mapper;file=@strcat("HORRY.",h,".mesh140_std.pial.asc")>;
+                file inputFile <single_file_mapper;file=@strcat("results/",h,"_",seed,"_new_sorted.txt")>;
+                string outPrefix=@strcat(h,"_",seed,"_Thresh",thresh);
+                string vals_name = @strcat(outPrefix,"_Clustered_r",rmm,"_a2.0.niml.dset, ");
+                string msk_name = @strcat(outPrefix,"_ClstMsk_r",rmm,"_a2.0.niml.dset, ");
+                string table_name = @strcat(outPrefix,"_ClstTable_r",rmm,"_a2.0.1D");
+                string out_files = @strcat(vals_name, msk_name, table_name);
+                file surfclustOutput[] <fixed_array_mapper;files=out_files>;
+                (surfclustOutput) = SurfClust(HORRYspec,HORRYsurf,inputFile,thresh,rmm,outPrefix);
+            }
         }
     }
 }