Executing: uname -s
stdout: Linux
=============================================================================================
                         Configuring PETSc to compile on your system
=============================================================================================

================================================================================
================================================================================
Starting configure run at Thu, 23 Jan 2025 17:51:36 -0700
Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions
Working directory: /u/pa/bg/ntilton/petsc
Machine platform:
uname_result(system='Linux', node='Odin.mines.edu', release='5.15.0-127-generic', version='#137~20.04.1-Ubuntu SMP Fri Nov 15 14:46:54 UTC 2024', machine='x86_64', processor='x86_64')
Python version:
3.8.10 (default, Jan 17 2025, 14:40:23) 
[GCC 9.4.0]
================================================================================
  Environmental variables
SHELL=/bin/bash
PWD=/u/pa/bg/ntilton/petsc
KRB5CCNAME=KEYRING:persistent:28957
LOGNAME=ntilton
XDG_SESSION_TYPE=tty
MOTD_SHOWN=pam
HOME=/u/pa/bg/ntilton
LANG=en_US.UTF-8
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:
SSH_CONNECTION=138.67.171.130 54334 138.67.40.252 22
LESSCLOSE=/usr/bin/lesspipe %s %s
XDG_SESSION_CLASS=user
TERM=xterm-256color
LESSOPEN=| /usr/bin/lesspipe %s
USER=ntilton
SHLVL=1
XDG_SESSION_ID=749
XDG_RUNTIME_DIR=/run/user/28957
SSH_CLIENT=138.67.171.130 54334 22
XDG_DATA_DIRS=/usr/local/share:/usr/share:/var/lib/snapd/desktop
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/28957/bus
SSH_TTY=/dev/pts/0
_=./configure
OLDPWD=/u/pa/bg/ntilton
    Files in path provided by default path
      /usr/local/sbin: 
      /usr/local/bin: matlab mex mbuild deploytool mcc
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dmraid sensors-detect fstab-decode era_restore logrotate mkfs.msdos unix_update cracklib-check icupkg tlp update-catalog create-cracklib-dict cppw pccardctl pam-auth-update pam_getenv getty ip6tables-restore-translate mkswap pppoe-discovery chroot e4crypt tzconfig atd postfix-add-policy ip6tables-nft-save ip alsa integritysetup sendmail ippusbxd iptables-apply grub-macbless thin_rmap iptables-nft-save apparmor_parser thin_delta lvdisplay ip6tables-legacy-save rmt regdbdump ebtables tipc vgexport openvpn blkdeactivate lpadmin getpcaps mklost+found agetty dhclient iwpriv iptables-restore update-dictcommon-hunspell depmod cache_writeback gennorm2 lsmod ip6tables-restore sulogin update-passwd lpinfo tc e2fsck update-locale mount.lowntfs-3g ntfslabel pwconv NetworkManager era_invalidate mkfs.ext2 pvremove arpd chgpasswd tcpdump cpgr pptpsetup grpunconv iwconfig debugfs rdate getweb groupmems ispell-autobuildhash devlink lvscan unix_chkpwd lvextend unity-greeter remove-default-ispell iptables-legacy-save grpck fsck.msdos mkinitramfs postfix dmeventd lpmove pvscan iptables-restore-translate addgnupghome cracklib-format dhclient-script update-language-def isosize hdparm addgroup dmstats wpa_action vgck ntfsundelete update-tl-stacked-conffile ip6tables-nft-restore dmsetup genccode gnome-menus-blacklist runlevel fsck.ext4 cron sgdisk thin_restore blkzone fsck.vfat resize2fs mount.ntfs-3g thin_repair plymouthd ntfsclone remove-default-wordlist vgmerge xfpm-power-backlight-helper thermald vgchange hwclock update-default-wordlist update-default-ispell cache_repair iptables-nft mount.ntfs qmqp-source ip6tables-translate mkfs.bfs update-fonts-dir e2scrub_all update-texmf fdformat killall5 pivot_root setvesablank update-fonts-scale lvmpolld casper-getty chcpu casper-login gdm3 casper-new-uuid cifs.idmap usb_modeswitch_dispatcher filefrag saned update-icon-caches crda popularity-contest update-mime adduser iptables-translate fsck.btrfs dpkg-preconfigure bridge update-info-dir mkntfs aa-remove-unknown service prime-offload e2scrub dmraid-activate ctrlaltdel ntfscp ip6tables-legacy-restore arptables-nft lpc dnsmasq libgvc6-config-update e2freefrag aa-teardown pam_extrausers_chkpwd lvmsadc e4defrag grub-bios-setup mkfs.vfat cupsaccept vgdisplay vigr update-default-aspell era_check swapoff nologin install-sgmlcatalog cache_metadata_size vgconvert iucode_tool ethtool pwck update-updmap mkdosfs grub-mkconfig acpid groupdel apparmor_status aa-status chat upgrade-from-grub-legacy chmem update-grub pvs vgcfgbackup usbmuxd swaplabel newusers update-secureboot-policy postfix-add-filter cfdisk smtp-sink sssd iptables-save blkdiscard fsadm insmod mkfs.ext3 xrdp-chansrv alsa-info tune2fs update-pciids isadump update-texmf-config lvmconfig groupadd xtables-monitor setcap iptables lvreduce vpddecode ufw vgscan wipefs vgs thin_ls start-stop-daemon veritysetup era_dump maidag getcap vgcfgrestore netplan cupsdisable mkfs mkfs.cramfs lvcreate pppstats update-inetd findfs pvmove update-xmlcatalog fixparts fstrim usermod cache_dump cgdisk fsck.ext3 pam_tally2 rmt-tar ldconfig rmmod nfnl_osf applygnupgdefaults raw pam_tally grpconv cifs.upcall dmidecode cupsenable usb_modeswitch update-fonts-alias postmap fsck.ext2 posttls-finger ntfsresize postconf update-language-dat get-quirk-options brltty-setup xtables-legacy-multi ebtables-nft-restore cache_check iptables-nft-restore update-initramfs cups-browsed xrdp-sesman e2label lvmdiskscan ldconfig.real update-fmtutil chpasswd netscsid postalias fsck.fat lightdm update-ca-certificates ub-device-create update-language-lua irqbalance ebtables-nft-save pam_timestamp_check select-default-wordlist fatlabel isaset postcat ebtables-save xrdp postlog vgcreate mkfs.ext4 thin_trim rtkitctl dpkg-reconfigure arptables-restore pppd pvresize rfkill mkhomedir_helper pptp cracklib-unpacker irqbalance-ui postkick lightdm-session parted lvresize cracklib-packer poweroff mount.fuse arptables-nft-save setvtrgb
      /usr/bin: etags remmina-file-wrapper lsattr pamfile tgatoppm dvilj g++ pactl pamdice pphs ntfsdecrypt tail dh_installdocs editres base32 gcov-tool-9 messages svnmucc bib2gls identify-im6.q16 xpmtoppm update-notifier bluetooth-sendto cifscreds cheese palmtopnm setpci ovp2ovf xfce4-notifyd-config vpl2vpl apt-key make4ht openfoam2106 mtype pgrep gvfs-info vimdot whoami linux-update-symlinks arch whatis setkeycodes x86_64-linux-gnu-cpp nice x86_64-linux-gnu-gcc-ranlib-9 gcov-7 avahi-publish-address unflatten pinentry-curses axfer pfbtopfa ktraderclient5 busctl groff hd x86_64-linux-gnu-gcov-tool-8 setfont dpkg-gencontrol x86_64-linux-gnu-ld mrd t1mac showconsolefont screendump x86_64-linux-gnu-gcc-9 gvfs-rm rksh2020 svnauthz avahi-resolve gcc-ranlib-9 btrfs false nvidia-xconfig systemd-tty-ask-password-agent latex-wordcount systemd-cgls t1rawafm ktutil md5pass quirks-handler xrdp-dis ctanupload animate chfn imgtoppm tr ppmtopj gdk-pixbuf-csource rygel btattach gnuplot zfgrep sputoppm 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      /usr/games: gnome-mahjongg gnome-sudoku gnome-mines sol
      /usr/local/games: 
      /snap/bin: cups.lp cups.lprm cups.lpadmin cups.reject cups.cancel cups.cupsctl cups.lpc cups.cupsfilter cups.cupsenable cups.lpr snap-store snap-store.ubuntu-software cups.lpq cups.ippfind cups.lpoptions cups.gs cups.accept chromium.chromedriver chromium cups.ipptool cups.ippeveprinter cups.cupsdisable cups.driverless snap-store.ubuntu-software-local-file prospect-mail cups.cupsaccept cups.lpstat cups.cupsreject cups.lpinfo cups.cupstestppd
=============================================================================================
TESTING: configureExternalPackagesDir from config.framework(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/framework.py:1092)
  Set alternative directory external packages are built in
    serialEvaluation: initial cxxDialectRanges ('c++11', 'c++20')
    serialEvaluation: new cxxDialectRanges ('c++11', 'c++20')
    child config.utilities.macosFirewall took 0.000002 seconds
=============================================================================================
TESTING: configureDebuggers from config.utilities.debuggers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/utilities/debuggers.py:20)
  Find a default debugger and determine its arguments
    Checking for program /usr/local/sbin/gdb...not found
    Checking for program /usr/local/bin/gdb...not found
    Checking for program /usr/sbin/gdb...not found
    Checking for program /usr/bin/gdb...found
              Defined make macro "GDB" to "/usr/bin/gdb"
            Defined "USE_DEBUGGER" to ""gdb""
            Defined make macro "DSYMUTIL" to "true"
    child config.utilities.debuggers took 0.000663 seconds
=============================================================================================
TESTING: configureDirectories from PETSc.options.petscdir(/u/pa/bg/ntilton/petsc/config/PETSc/options/petscdir.py:22)
  Checks PETSC_DIR and sets if not set
          PETSC_VERSION_RELEASE of 1 indicates the code is from a release branch or a branch created from a release branch.
          Version Information:
          #define PETSC_VERSION_RELEASE    1
          #define PETSC_VERSION_MAJOR      3
          #define PETSC_VERSION_MINOR      22
          #define PETSC_VERSION_SUBMINOR   2
          #define PETSC_VERSION_DATE       "unknown"
          #define PETSC_VERSION_GIT        "unknown"
          #define PETSC_VERSION_DATE_GIT   "unknown"
          #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \
          #define PETSC_VERSION_ PETSC_VERSION_EQ
          #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR)          \
          #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \
          #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \
          #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \
    child PETSc.options.petscdir took 0.000965 seconds
=============================================================================================
TESTING: getDatafilespath from PETSc.options.dataFilesPath(/u/pa/bg/ntilton/petsc/config/PETSc/options/dataFilesPath.py:29)
  Checks what DATAFILESPATH should be
    child PETSc.options.dataFilesPath took 0.000140 seconds
=============================================================================================
TESTING: configureGit from config.sourceControl(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/sourceControl.py:24)
  Find the Git executable
    Checking for program /usr/local/sbin/git...not found
    Checking for program /usr/local/bin/git...not found
    Checking for program /usr/sbin/git...not found
    Checking for program /usr/bin/git...found
              Defined make macro "GIT" to "git"
Executing: git --version
stdout: git version 2.25.1
=============================================================================================
TESTING: configureMercurial from config.sourceControl(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/sourceControl.py:35)
  Find the Mercurial executable
    Checking for program /usr/local/sbin/hg...not found
    Checking for program /usr/local/bin/hg...not found
    Checking for program /usr/sbin/hg...not found
    Checking for program /usr/bin/hg...found
              Defined make macro "HG" to "hg"
Executing: hg version -q
stdout: Mercurial Distributed SCM (version 5.3.1)
    child config.sourceControl took 0.072343 seconds
=============================================================================================
TESTING: configureInstallationMethod from PETSc.options.petscclone(/u/pa/bg/ntilton/petsc/config/PETSc/options/petscclone.py:20)
  Determine if PETSc was obtained via git or a tarball
          lib/petsc/bin/maint exists. This appears to be a repository clone
          .git directory exists
Executing: ['git', 'describe', '--match=v*']
stdout: v3.22.2-42-ge76e20974b3
Executing: ['git', 'log', '-1', '--pretty=format:%H']
stdout: e76e20974b308205e306da4f7c40dc617cf595f4
Executing: ['git', 'log', '-1', '--pretty=format:%ci']
stdout: 2025-01-22 02:47:46 +0000
Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD']
stdout: release
Executing: ['git', 'status', '--short', '-uno']
            Defined "VERSION_GIT" to ""v3.22.2-42-ge76e20974b3""
            Defined "VERSION_DATE_GIT" to ""2025-01-22 02:47:46 +0000""
            Defined "VERSION_BRANCH_GIT" to ""release""
    child PETSc.options.petscclone took 0.042683 seconds
=============================================================================================
TESTING: setNativeArchitecture from PETSc.options.arch(/u/pa/bg/ntilton/petsc/config/PETSc/options/arch.py:29)
  Forms the arch as GNU's configure would form it
=============================================================================================
TESTING: configureArchitecture from PETSc.options.arch(/u/pa/bg/ntilton/petsc/config/PETSc/options/arch.py:42)
  Checks if PETSC_ARCH is set and sets it if not set
        No previous hashfile found
          Setting hashfile: arch-linux-c-debug/lib/petsc/conf/configure-hash
          Deleting configure hash file: arch-linux-c-debug/lib/petsc/conf/configure-hash
          Unable to delete configure hash file: arch-linux-c-debug/lib/petsc/conf/configure-hash
    child PETSc.options.arch took 0.021597 seconds
=============================================================================================
TESTING: setInstallDir from PETSc.options.installDir(/u/pa/bg/ntilton/petsc/config/PETSc/options/installDir.py:31)
  Set installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH
            Defined make macro "PREFIXDIR" to "/u/pa/bg/ntilton/petsc/arch-linux-c-debug"
=============================================================================================
TESTING: saveReconfigure from PETSc.options.installDir(/u/pa/bg/ntilton/petsc/config/PETSc/options/installDir.py:76)
  Save the configure options in a script in PETSC_ARCH/lib/petsc/conf so the same configure may be easily re-run
=============================================================================================
TESTING: cleanConfDir from PETSc.options.installDir(/u/pa/bg/ntilton/petsc/config/PETSc/options/installDir.py:68)
  Remove all the files from configuration directory for this PETSC_ARCH, from --with-clean option
=============================================================================================
TESTING: configureInstallDir from PETSc.options.installDir(/u/pa/bg/ntilton/petsc/config/PETSc/options/installDir.py:52)
  Makes  installDir subdirectories if it does not exist for both prefix install location and PETSc work install location
          Changed persistence directory to /u/pa/bg/ntilton/petsc/arch-linux-c-debug/lib/petsc/conf
=============================================================================================
TESTING: restoreReconfigure from PETSc.options.installDir(/u/pa/bg/ntilton/petsc/config/PETSc/options/installDir.py:90)
  If --with-clean was requested but restoring the reconfigure file was requested then restore it
    child PETSc.options.installDir took 0.001394 seconds
=============================================================================================
TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/u/pa/bg/ntilton/petsc/config/PETSc/options/externalpackagesdir.py:15)
  Set location where external packages will be downloaded to
=============================================================================================
TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/u/pa/bg/ntilton/petsc/config/PETSc/options/externalpackagesdir.py:23)
  Remove all downloaded external packages, from --with-clean
    child PETSc.options.externalpackagesdir took 0.000301 seconds
=============================================================================================
TESTING: configureCLanguage from PETSc.options.languages(/u/pa/bg/ntilton/petsc/config/PETSc/options/languages.py:28)
  Choose whether to compile the PETSc library using a C or C++ compiler
          C language is C
            Defined "CLANGUAGE_C" to "1"
            Defined make macro "CLANGUAGE" to "C"
    child PETSc.options.languages took 0.000559 seconds
=============================================================================================
TESTING: resetEnvCompilers from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:2770)
  Remove compilers from the shell environment so they do not interfere with testing
=============================================================================================
TESTING: checkEnvCompilers from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:2787)
  Set configure compilers from the environment, from -with-environment-variables
=============================================================================================
TESTING: checkMPICompilerOverride from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:2740)
  Check if --with-mpi-dir is used along with CC CXX or FC compiler options.
    This usually prevents mpi compilers from being used - so issue a warning
=============================================================================================
TESTING: requireMpiLdPath from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:2761)
  Open MPI wrappers require LD_LIBRARY_PATH set
=============================================================================================
TESTING: checkInitialFlags from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:748)
  Initialize the compiler and linker flags
          Initialized CFLAGS to 
          Initialized CFLAGS to 
          Initialized LDFLAGS to 
          Initialized CUDAFLAGS to 
          Initialized CUDAFLAGS to 
          Initialized LDFLAGS to 
          Initialized HIPFLAGS to 
          Initialized HIPFLAGS to 
          Initialized LDFLAGS to 
          Initialized SYCLFLAGS to 
          Initialized SYCLFLAGS to 
          Initialized SYCLC_LINKER_FLAGS to 
          Initialized CXXFLAGS to 
          Initialized CXX_CXXFLAGS to 
          Initialized LDFLAGS to 
          Initialized FFLAGS to 
          Initialized FFLAGS to 
          Initialized LDFLAGS to 
          Initialized CPPFLAGS to 
          Initialized FPPFLAGS to 
          Initialized CUDAPPFLAGS to 
          Initialized CXXPPFLAGS to 
          Initialized HIPPPFLAGS to 
          Initialized SYCLPPFLAGS to 
          Initialized CC_LINKER_FLAGS to []
          Initialized CXX_LINKER_FLAGS to []
          Initialized FC_LINKER_FLAGS to []
          Initialized CUDAC_LINKER_FLAGS to []
          Initialized HIPC_LINKER_FLAGS to []
          Initialized sharedLibraryFlags to []
          Initialized dynamicLibraryFlags to []
=============================================================================================
TESTING: checkCCompiler from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:1457)
    Checking for program /usr/local/sbin/mpincc...not found
    Checking for program /usr/local/bin/mpincc...not found
    Checking for program /usr/sbin/mpincc...not found
    Checking for program /usr/bin/mpincc...not found
    Checking for program /sbin/mpincc...not found
    Checking for program /bin/mpincc...not found
    Checking for program /usr/games/mpincc...not found
    Checking for program /usr/local/games/mpincc...not found
    Checking for program /snap/bin/mpincc...not found
    Checking for program /u/pa/bg/ntilton/petsc/lib/petsc/bin/win32fe/mpincc...not found
    Checking for program /usr/local/sbin/mpicc...not found
    Checking for program /usr/local/bin/mpicc...not found
    Checking for program /usr/sbin/mpicc...not found
    Checking for program /usr/bin/mpicc...found
              Defined make macro "CC" to "mpicc"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest    /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest    /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o  -lpetsc-ufod4vtr9mqHvKIQiVAm
stdout:
/usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm
collect2: error: ld returned 1 exit status
======== Checking running linked program
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest    /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o 
Testing executable /tmp/petsc-7m47ck2r/config.setCompilers/conftest to see if it can be run
Executing: /tmp/petsc-7m47ck2r/config.setCompilers/conftest
Running Executable with threads to time it out at 60
Executing: /tmp/petsc-7m47ck2r/config.setCompilers/conftest
Executing: mpicc --version
stdout:
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Executing: mpicc -v | head -n 20
stdout:
Using built-in specs.
COLLECT_GCC=/usr/bin/gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.4.0-1ubuntu1~20.04.2' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-9QDOt0/gcc-9-9.4.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.4.0 (Ubuntu 9.4.0-1ubuntu1~20.04.2)
          Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers

=============================================================================================
TESTING: checkCPreprocessor from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:1504)
  Locate a functional C preprocessor
    Checking for program /usr/local/sbin/mpicc...not found
    Checking for program /usr/local/bin/mpicc...not found
    Checking for program /usr/sbin/mpicc...not found
    Checking for program /usr/bin/mpicc...found
              Defined make macro "CPP" to "mpicc -E"
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <stdlib.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
=============================================================================================
TESTING: checkCxxCompiler from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:1786)
  Locate a functional Cxx compiler
    Checking for program /usr/local/sbin/mpinc++...not found
    Checking for program /usr/local/bin/mpinc++...not found
    Checking for program /usr/sbin/mpinc++...not found
    Checking for program /usr/bin/mpinc++...not found
    Checking for program /sbin/mpinc++...not found
    Checking for program /bin/mpinc++...not found
    Checking for program /usr/games/mpinc++...not found
    Checking for program /usr/local/games/mpinc++...not found
    Checking for program /snap/bin/mpinc++...not found
    Checking for program /u/pa/bg/ntilton/petsc/lib/petsc/bin/win32fe/mpinc++...not found
    Checking for program /usr/local/sbin/mpinc++...not found
    Checking for program /usr/local/bin/mpinc++...not found
    Checking for program /usr/sbin/mpinc++...not found
    Checking for program /usr/bin/mpinc++...not found
    Checking for program /sbin/mpinc++...not found
    Checking for program /bin/mpinc++...not found
    Checking for program /usr/games/mpinc++...not found
    Checking for program /usr/local/games/mpinc++...not found
    Checking for program /snap/bin/mpinc++...not found
    Checking for program /u/pa/bg/ntilton/petsc/lib/petsc/bin/win32fe/mpinc++...not found
    Checking for program /usr/local/sbin/mpinc++...not found
    Checking for program /usr/local/bin/mpinc++...not found
    Checking for program /usr/sbin/mpinc++...not found
    Checking for program /usr/bin/mpinc++...not found
    Checking for program /sbin/mpinc++...not found
    Checking for program /bin/mpinc++...not found
    Checking for program /usr/games/mpinc++...not found
    Checking for program /usr/local/games/mpinc++...not found
    Checking for program /snap/bin/mpinc++...not found
    Checking for program /u/pa/bg/ntilton/petsc/lib/petsc/bin/win32fe/mpinc++...not found
    Checking for program /usr/local/sbin/mpicxx...not found
    Checking for program /usr/local/bin/mpicxx...not found
    Checking for program /usr/sbin/mpicxx...not found
    Checking for program /usr/bin/mpicxx...found
              Defined make macro "CXX" to "mpicxx"
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers    /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers    /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicxx  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest    /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o 
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers    /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicxx  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest    /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o  -lpetsc-ufod4vtr9mqHvKIQiVAm
stdout:
/usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm
collect2: error: ld returned 1 exit status
======== Checking running linked program
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers    /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicxx  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest    /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o 
Testing executable /tmp/petsc-7m47ck2r/config.setCompilers/conftest to see if it can be run
Executing: /tmp/petsc-7m47ck2r/config.setCompilers/conftest
Running Executable with threads to time it out at 60
Executing: /tmp/petsc-7m47ck2r/config.setCompilers/conftest
Executing: mpicxx --version
stdout:
g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
=============================================================================================
TESTING: checkDeviceHostCompiler from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:774)
  Set the host compiler (HC) of the device compiler (DC) to the HC unless the DC already explicitly sets its HC. This may be needed if the default HC used by the DC is ancient and PETSc uses a different HC (e.g., through --with-cxx=...).
Executing: mpicxx --help | head -n 20 
stdout:
Usage: g++ [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
Detected GNU compiler
=============================================================================================
TESTING: checkCxxDialect from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:796)
  Determine the CXX dialect supported by the compiler (language) [and corresponding compiler
    option - if any].

    isGNUish indicates if the compiler is gnu compliant (i.e. clang).
    -with-<lang>-dialect can take options:
      auto: use highest supported dialect configure can determine
      [[c|gnu][xx|++]]23: not yet supported
      [[c|gnu][xx|++]]20: gnu++20 or c++20
      [[c|gnu][xx|++]]17: gnu++17 or c++17
      [[c|gnu][xx|++]]14: gnu++14 or c++14
      [[c|gnu][xx|++]]11: gnu++11 or c++11
      0: disable CxxDialect check and use compiler default

    On return this function sets the following values:
    - if needed, appends the relevant CXX dialect flag to <lang> compiler flags
    - self.cxxDialectRange = (minSupportedDialect,maxSupportedDialect) (e.g. ('c++11','c++14'))
    - self.addDefine('HAVE_{LANG}_DIALECT_CXX{DIALECT_NUM}',1) for every supported dialect
    - self.lang+'dialect' = 'c++'+maxDialectNumber (e.g. 'c++14') but ONLY if the user
      specifically requests a dialect version, otherwise this is not set

    Raises a config.base.ConfigureSetupError if:
    - The user has set both the --with-dialect=[...] configure options and -std=[...] in their
      compiler flags
    - The combination of specifically requested packages cannot all be compiled with the same flag
    - An unknown C++ dialect is provided

    The config.base.ConfigureSetupErrors are NOT meant to be caught, as they are fatal errors
    on part of the user

    Raises a RuntimeError (which may be caught) if:
    - The compiler does not support at minimum -std=c++11
    
Executing: mpicxx --version
stdout:
g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Did not detect MSVC
Detected Non-Microsoft Windows native compiler
          checkCxxDialect: checking C++ dialect version for language "CXX" using compiler "mpicxx"
          checkCxxDialect: PETSc believes compiler (mpicxx) IS gnu-ish
          checkCxxDialect: PETSc believes that we have NOT processed mpicxx before
          checkCxxDialect: configure option after sanitization: --with-cxx-dialect=AUTO
          checkCxxDialect: dialect AUTO has been NOT explicitly selected for CXX
          checkCxxDialect: Have potential flag pool:
	   - -std=gnu++20
	   - -std=c++20
	   - -std=gnu++17
	   - -std=c++17
	   - -std=gnu++14
	   - -std=c++14
	   - -std=gnu++11
	   - -std=c++11
          checkCxxDialect: checking CXX 20 for cxx with -std=gnu++20
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   -std=gnu++20   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
stdout: g++: error: unrecognized command line option ‘-std=gnu++20’; did you mean ‘-std=gnu++2a’?
Possible ERROR while running compiler: exit code 1
stderr:
g++: error: unrecognized command line option ‘-std=gnu++20’; did you mean ‘-std=gnu++2a’?
Source:
#include "confdefs.h"
#include "conffix.h"

// c++11 includes
#include <memory>
#include <random>
#include <complex>
#include <iostream>
#include <algorithm>

template<class T> void ignore(const T&) { } // silence unused variable warnings
class valClass
{
public:
  int i;
  valClass() { i = 3; }
  valClass(int x) : i(x) { }
};

class MoveSemantics
{
  std::unique_ptr<valClass> _member;

public:
  MoveSemantics(int val = 4) : _member(new valClass(val)) { }
  MoveSemantics& operator=(MoveSemantics &&other) noexcept = default;
};

template<typename T> constexpr T Cubed( T x ) { return x*x*x; }
auto trailing(int x) -> int { return x+2; }
enum class Shapes : int {SQUARE,CIRCLE};
template<class ... Types> struct Tuple { };
using PetscErrorCode = int;


// c++14 includes
#include <type_traits>

template<class T> constexpr T pi = T(3.1415926535897932385L);  // variable template


// c++17 includes
#include <string_view>
#include <any>
#include <optional>
#include <variant>
#include <tuple>
#include <new>

std::align_val_t dummy;
[[nodiscard]] int nodiscardFunc() { return 0; }
struct S2
{
  // static inline member variables since c++17
  static inline int var = 8675309;
  void f(int i);
};
void S2::f(int i)
{
  // until c++17: Error: invalid syntax
  // since c++17: OK: captures the enclosing S2 by copy
  auto lmbd = [=, *this] { std::cout << i << " " << this->var << std::endl; };
  lmbd();
}
std::tuple<double, int, char> foobar()
{
  return {3.8, 0, 'x'};
}


// c++20 includes
#include <compare>
#include <concepts>

consteval int sqr_cpp20(int n)
{
  return n*n;
}
constexpr auto r = sqr_cpp20(10);
static_assert(r == 100);

const char *g_cpp20() { return "dynamic initialization"; }
constexpr const char *f_cpp20(bool p) { return p ? "constant initializer" : g_cpp20(); }
constinit const char *cinit_c = f_cpp20(true); // OK

// Declaration of the concept "Hashable", which is satisfied by any type 'T'
// such that for values 'a' of type 'T', the expression std::hash<T>{}(a)
// compiles and its result is convertible to std::size_t
template <typename T>
concept Hashable = requires(T a)
{
  { std::hash<T>{}(a) } -> std::convertible_to<std::size_t>;
};

struct meow {};

// Constrained C++20 function template:
template <Hashable T>
void f_concept(T) {}

void abbrev_f1(auto); // same as template<class T> void abbrev_f1(T)
void abbrev_f4(const std::destructible auto*, std::floating_point auto&); // same as template<C3 T, C4 U> void abbrev_f4(const T*, U&);

template<>
void abbrev_f4<int>(const int*, const double&); // specialization of abbrev_f4<int, const double> (since C++20)

int main(void) {

// c++11 body
valClass cls = valClass(); // value initialization
int i = cls.i;             // i is not declared const
const int& rci = i;        // but rci is
const_cast<int&>(rci) = 4;

constexpr int big_value = 1234;
decltype(big_value) ierr = big_value;
auto ret = trailing(ierr);
MoveSemantics bob;
MoveSemantics alice;
alice = std::move(bob);ignore(alice);
Tuple<> t0;ignore(t0);
Tuple<long> t1;ignore(t1);
Tuple<int,float> t2;ignore(t2);
std::random_device rd;
std::mt19937 mt(rd());
std::normal_distribution<double> dist(0,1);
const double x = dist(mt);
std::cout << x << ret << std::endl;
std::vector<std::unique_ptr<double>> vector;
std::sort(vector.begin(), vector.end(), [](std::unique_ptr<double> &a, std::unique_ptr<double> &b) { return *a < *b; });


// c++14 body
auto ptr = std::make_unique<int>();
*ptr = 1;
std::cout << pi<double> << std::endl;
constexpr const std::complex<double> const_i(0.0,1.0);
auto lambda = [](auto x, auto y) { return x + y; };
std::cout << lambda(3,4) << std::real(const_i) << std::endl;


// c++17 body
std::variant<int,float> v,w;
v = 42;               // v contains int
int ivar = std::get<int>(v);
w = std::get<0>(v);   // same effect as the previous line
w = v;                // same effect as the previous line
S2 foo;
foo.f(ivar);
if constexpr (std::is_arithmetic_v<int>) std::cout << "c++17" << std::endl;
typedef std::integral_constant<Shapes,Shapes::SQUARE> squareShape;
// static_assert with no message since c++17
static_assert(std::is_same_v<squareShape,squareShape>);
auto val = nodiscardFunc();ignore(val);
// structured binding
const auto [ab, cd, ef] = foobar();


// c++20 body
ignore(cinit_c);

using std::operator""s;
f_concept("abc"s);

  return 0;
}

              Output from compiling with  -std=gnu++20 
g++: error: unrecognized command line option ‘-std=gnu++20’; did you mean ‘-std=gnu++2a’?

PETSc Error: No output file produced
              Rejecting compiler flag -std=gnu++20  due to nonzero status from link
          checkCxxDialect: checking CXX 20 for cxx with -std=c++20
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   -std=c++20   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
stdout: g++: error: unrecognized command line option ‘-std=c++20’; did you mean ‘-std=c++2a’?
Possible ERROR while running compiler: exit code 1
stderr:
g++: error: unrecognized command line option ‘-std=c++20’; did you mean ‘-std=c++2a’?
Source:
#include "confdefs.h"
#include "conffix.h"

// c++11 includes
#include <memory>
#include <random>
#include <complex>
#include <iostream>
#include <algorithm>

template<class T> void ignore(const T&) { } // silence unused variable warnings
class valClass
{
public:
  int i;
  valClass() { i = 3; }
  valClass(int x) : i(x) { }
};

class MoveSemantics
{
  std::unique_ptr<valClass> _member;

public:
  MoveSemantics(int val = 4) : _member(new valClass(val)) { }
  MoveSemantics& operator=(MoveSemantics &&other) noexcept = default;
};

template<typename T> constexpr T Cubed( T x ) { return x*x*x; }
auto trailing(int x) -> int { return x+2; }
enum class Shapes : int {SQUARE,CIRCLE};
template<class ... Types> struct Tuple { };
using PetscErrorCode = int;


// c++14 includes
#include <type_traits>

template<class T> constexpr T pi = T(3.1415926535897932385L);  // variable template


// c++17 includes
#include <string_view>
#include <any>
#include <optional>
#include <variant>
#include <tuple>
#include <new>

std::align_val_t dummy;
[[nodiscard]] int nodiscardFunc() { return 0; }
struct S2
{
  // static inline member variables since c++17
  static inline int var = 8675309;
  void f(int i);
};
void S2::f(int i)
{
  // until c++17: Error: invalid syntax
  // since c++17: OK: captures the enclosing S2 by copy
  auto lmbd = [=, *this] { std::cout << i << " " << this->var << std::endl; };
  lmbd();
}
std::tuple<double, int, char> foobar()
{
  return {3.8, 0, 'x'};
}


// c++20 includes
#include <compare>
#include <concepts>

consteval int sqr_cpp20(int n)
{
  return n*n;
}
constexpr auto r = sqr_cpp20(10);
static_assert(r == 100);

const char *g_cpp20() { return "dynamic initialization"; }
constexpr const char *f_cpp20(bool p) { return p ? "constant initializer" : g_cpp20(); }
constinit const char *cinit_c = f_cpp20(true); // OK

// Declaration of the concept "Hashable", which is satisfied by any type 'T'
// such that for values 'a' of type 'T', the expression std::hash<T>{}(a)
// compiles and its result is convertible to std::size_t
template <typename T>
concept Hashable = requires(T a)
{
  { std::hash<T>{}(a) } -> std::convertible_to<std::size_t>;
};

struct meow {};

// Constrained C++20 function template:
template <Hashable T>
void f_concept(T) {}

void abbrev_f1(auto); // same as template<class T> void abbrev_f1(T)
void abbrev_f4(const std::destructible auto*, std::floating_point auto&); // same as template<C3 T, C4 U> void abbrev_f4(const T*, U&);

template<>
void abbrev_f4<int>(const int*, const double&); // specialization of abbrev_f4<int, const double> (since C++20)

int main(void) {

// c++11 body
valClass cls = valClass(); // value initialization
int i = cls.i;             // i is not declared const
const int& rci = i;        // but rci is
const_cast<int&>(rci) = 4;

constexpr int big_value = 1234;
decltype(big_value) ierr = big_value;
auto ret = trailing(ierr);
MoveSemantics bob;
MoveSemantics alice;
alice = std::move(bob);ignore(alice);
Tuple<> t0;ignore(t0);
Tuple<long> t1;ignore(t1);
Tuple<int,float> t2;ignore(t2);
std::random_device rd;
std::mt19937 mt(rd());
std::normal_distribution<double> dist(0,1);
const double x = dist(mt);
std::cout << x << ret << std::endl;
std::vector<std::unique_ptr<double>> vector;
std::sort(vector.begin(), vector.end(), [](std::unique_ptr<double> &a, std::unique_ptr<double> &b) { return *a < *b; });


// c++14 body
auto ptr = std::make_unique<int>();
*ptr = 1;
std::cout << pi<double> << std::endl;
constexpr const std::complex<double> const_i(0.0,1.0);
auto lambda = [](auto x, auto y) { return x + y; };
std::cout << lambda(3,4) << std::real(const_i) << std::endl;


// c++17 body
std::variant<int,float> v,w;
v = 42;               // v contains int
int ivar = std::get<int>(v);
w = std::get<0>(v);   // same effect as the previous line
w = v;                // same effect as the previous line
S2 foo;
foo.f(ivar);
if constexpr (std::is_arithmetic_v<int>) std::cout << "c++17" << std::endl;
typedef std::integral_constant<Shapes,Shapes::SQUARE> squareShape;
// static_assert with no message since c++17
static_assert(std::is_same_v<squareShape,squareShape>);
auto val = nodiscardFunc();ignore(val);
// structured binding
const auto [ab, cd, ef] = foobar();


// c++20 body
ignore(cinit_c);

using std::operator""s;
f_concept("abc"s);

  return 0;
}

              Output from compiling with  -std=c++20 
g++: error: unrecognized command line option ‘-std=c++20’; did you mean ‘-std=c++2a’?

PETSc Error: No output file produced
              Rejecting compiler flag -std=c++20  due to nonzero status from link
          checkCxxDialect: checking CXX 17 for cxx with -std=gnu++17
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   -std=gnu++17   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

// c++11 includes
#include <memory>
#include <random>
#include <complex>
#include <iostream>
#include <algorithm>

template<class T> void ignore(const T&) { } // silence unused variable warnings
class valClass
{
public:
  int i;
  valClass() { i = 3; }
  valClass(int x) : i(x) { }
};

class MoveSemantics
{
  std::unique_ptr<valClass> _member;

public:
  MoveSemantics(int val = 4) : _member(new valClass(val)) { }
  MoveSemantics& operator=(MoveSemantics &&other) noexcept = default;
};

template<typename T> constexpr T Cubed( T x ) { return x*x*x; }
auto trailing(int x) -> int { return x+2; }
enum class Shapes : int {SQUARE,CIRCLE};
template<class ... Types> struct Tuple { };
using PetscErrorCode = int;


// c++14 includes
#include <type_traits>

template<class T> constexpr T pi = T(3.1415926535897932385L);  // variable template


// c++17 includes
#include <string_view>
#include <any>
#include <optional>
#include <variant>
#include <tuple>
#include <new>

std::align_val_t dummy;
[[nodiscard]] int nodiscardFunc() { return 0; }
struct S2
{
  // static inline member variables since c++17
  static inline int var = 8675309;
  void f(int i);
};
void S2::f(int i)
{
  // until c++17: Error: invalid syntax
  // since c++17: OK: captures the enclosing S2 by copy
  auto lmbd = [=, *this] { std::cout << i << " " << this->var << std::endl; };
  lmbd();
}
std::tuple<double, int, char> foobar()
{
  return {3.8, 0, 'x'};
}

int main(void) {

// c++11 body
valClass cls = valClass(); // value initialization
int i = cls.i;             // i is not declared const
const int& rci = i;        // but rci is
const_cast<int&>(rci) = 4;

constexpr int big_value = 1234;
decltype(big_value) ierr = big_value;
auto ret = trailing(ierr);
MoveSemantics bob;
MoveSemantics alice;
alice = std::move(bob);ignore(alice);
Tuple<> t0;ignore(t0);
Tuple<long> t1;ignore(t1);
Tuple<int,float> t2;ignore(t2);
std::random_device rd;
std::mt19937 mt(rd());
std::normal_distribution<double> dist(0,1);
const double x = dist(mt);
std::cout << x << ret << std::endl;
std::vector<std::unique_ptr<double>> vector;
std::sort(vector.begin(), vector.end(), [](std::unique_ptr<double> &a, std::unique_ptr<double> &b) { return *a < *b; });


// c++14 body
auto ptr = std::make_unique<int>();
*ptr = 1;
std::cout << pi<double> << std::endl;
constexpr const std::complex<double> const_i(0.0,1.0);
auto lambda = [](auto x, auto y) { return x + y; };
std::cout << lambda(3,4) << std::real(const_i) << std::endl;


// c++17 body
std::variant<int,float> v,w;
v = 42;               // v contains int
int ivar = std::get<int>(v);
w = std::get<0>(v);   // same effect as the previous line
w = v;                // same effect as the previous line
S2 foo;
foo.f(ivar);
if constexpr (std::is_arithmetic_v<int>) std::cout << "c++17" << std::endl;
typedef std::integral_constant<Shapes,Shapes::SQUARE> squareShape;
// static_assert with no message since c++17
static_assert(std::is_same_v<squareShape,squareShape>);
auto val = nodiscardFunc();ignore(val);
// structured binding
const auto [ab, cd, ef] = foobar();

  return 0;
}

              Output from compiling with  -std=gnu++17 

Added Cxx compiler flag -std=gnu++17
          checkCxxDialect: success using -std=gnu++17 for Cxx dialect C++17, set new cxxDialectRange: ('c++11', 'c++17')
            Defined "HAVE_CXX_DIALECT_CXX11" to "1"
            Defined "HAVE_CXX_DIALECT_CXX14" to "1"
            Defined "HAVE_CXX_DIALECT_CXX17" to "1"
=============================================================================================
TESTING: checkCxxPreprocessor from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:1822)
  Locate a functional Cxx preprocessor
    Checking for program /usr/local/sbin/mpicxx...not found
    Checking for program /usr/local/bin/mpicxx...not found
    Checking for program /usr/sbin/mpicxx...not found
    Checking for program /usr/bin/mpicxx...found
              Defined make macro "CXXPP" to "mpicxx -E"
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <cstdlib>

Executing: mpicxx -E  -I/tmp/petsc-7m47ck2r/config.setCompilers  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Preprocess output before filtering:
Preprocess output after filtering:
=============================================================================================
TESTING: checkCUDACompiler from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:1541)
  Locate a functional CUDA compiler
    Checking for program /usr/local/sbin/nvcc...not found
    Checking for program /usr/local/bin/nvcc...not found
    Checking for program /usr/sbin/nvcc...not found
    Checking for program /usr/bin/nvcc...not found
    Checking for program /sbin/nvcc...not found
    Checking for program /bin/nvcc...not found
    Checking for program /usr/games/nvcc...not found
    Checking for program /usr/local/games/nvcc...not found
    Checking for program /snap/bin/nvcc...not found
    Checking for program /u/pa/bg/ntilton/petsc/lib/petsc/bin/win32fe/nvcc...not found
    Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found
    Checking for program /u/pa/bg/ntilton/petsc/lib/petsc/bin/win32fe/nvcc...not found
  Unable to find programs: ['nvcc'] in listing of the specific search path: ['/Developer/NVIDIA/CUDA-6.5/bin']
      Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: [Errno 2] No such file or directory: '/Developer/NVIDIA/CUDA-6.5/bin'
    Checking for program /usr/local/cuda/bin/nvcc...not found
    Checking for program /u/pa/bg/ntilton/petsc/lib/petsc/bin/win32fe/nvcc...not found
  Unable to find programs: ['nvcc'] in listing of the specific search path: ['/usr/local/cuda/bin']
      Warning accessing /usr/local/cuda/bin gives errors: [Errno 2] No such file or directory: '/usr/local/cuda/bin'
    Checking for program /usr/local/sbin/clang...not found
    Checking for program /usr/local/bin/clang...not found
    Checking for program /usr/sbin/clang...not found
    Checking for program /usr/bin/clang...not found
    Checking for program /sbin/clang...not found
    Checking for program /bin/clang...not found
    Checking for program /usr/games/clang...not found
    Checking for program /usr/local/games/clang...not found
    Checking for program /snap/bin/clang...not found
    Checking for program /u/pa/bg/ntilton/petsc/lib/petsc/bin/win32fe/clang...not found
=============================================================================================
TESTING: checkDeviceHostCompiler from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:774)
  Set the host compiler (HC) of the device compiler (DC) to the HC unless the DC already explicitly sets its HC. This may be needed if the default HC used by the DC is ancient and PETSc uses a different HC (e.g., through --with-cxx=...).
          checkDeviceHostCompiler: checking CUDA accepts host compiler mpicxx
=============================================================================================
TESTING: checkHIPCompiler from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:1603)
  Locate a functional HIP compiler
    Checking for program /usr/local/sbin/hipcc...not found
    Checking for program /usr/local/bin/hipcc...not found
    Checking for program /usr/sbin/hipcc...not found
    Checking for program /usr/bin/hipcc...not found
    Checking for program /sbin/hipcc...not found
    Checking for program /bin/hipcc...not found
    Checking for program /usr/games/hipcc...not found
    Checking for program /usr/local/games/hipcc...not found
    Checking for program /snap/bin/hipcc...not found
    Checking for program /u/pa/bg/ntilton/petsc/lib/petsc/bin/win32fe/hipcc...not found
    Checking for program /usr/local/sbin/opt/rocm/bin/hipcc...not found
    Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found
    Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found
    Checking for program /usr/bin/opt/rocm/bin/hipcc...not found
    Checking for program /sbin/opt/rocm/bin/hipcc...not found
    Checking for program /bin/opt/rocm/bin/hipcc...not found
    Checking for program /usr/games/opt/rocm/bin/hipcc...not found
    Checking for program /usr/local/games/opt/rocm/bin/hipcc...not found
    Checking for program /snap/bin/opt/rocm/bin/hipcc...not found
    Checking for program /u/pa/bg/ntilton/petsc/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found
=============================================================================================
TESTING: checkDeviceHostCompiler from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:774)
  Set the host compiler (HC) of the device compiler (DC) to the HC unless the DC already explicitly sets its HC. This may be needed if the default HC used by the DC is ancient and PETSc uses a different HC (e.g., through --with-cxx=...).
=============================================================================================
TESTING: checkSYCLCompiler from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:1662)
  Locate a functional SYCL compiler
=============================================================================================
TESTING: checkDeviceHostCompiler from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:774)
  Set the host compiler (HC) of the device compiler (DC) to the HC unless the DC already explicitly sets its HC. This may be needed if the default HC used by the DC is ancient and PETSc uses a different HC (e.g., through --with-cxx=...).
=============================================================================================
TESTING: checkFortranCompiler from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:1915)
  Locate a functional Fortran compiler
    Checking for program /usr/local/sbin/mpinfort...not found
    Checking for program /usr/local/bin/mpinfort...not found
    Checking for program /usr/sbin/mpinfort...not found
    Checking for program /usr/bin/mpinfort...not found
    Checking for program /sbin/mpinfort...not found
    Checking for program /bin/mpinfort...not found
    Checking for program /usr/games/mpinfort...not found
    Checking for program /usr/local/games/mpinfort...not found
    Checking for program /snap/bin/mpinfort...not found
    Checking for program /u/pa/bg/ntilton/petsc/lib/petsc/bin/win32fe/mpinfort...not found
    Checking for program /usr/local/sbin/mpif90...not found
    Checking for program /usr/local/bin/mpif90...not found
    Checking for program /usr/sbin/mpif90...not found
    Checking for program /usr/bin/mpif90...found
              Defined make macro "FC" to "mpif90"
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest    /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o 
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest    /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o  -lpetsc-ufod4vtr9mqHvKIQiVAm
stdout:
/usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm
collect2: error: ld returned 1 exit status
======== Checking running linked program
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest    /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o 
Testing executable /tmp/petsc-7m47ck2r/config.setCompilers/conftest to see if it can be run
Executing: /tmp/petsc-7m47ck2r/config.setCompilers/conftest
Running Executable with threads to time it out at 60
Executing: /tmp/petsc-7m47ck2r/config.setCompilers/conftest
Executing: mpif90 --version
stdout:
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
=============================================================================================
TESTING: checkFortranPreprocessor from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:1951)
  Locate a functional Fortran preprocessor
    Checking for program /usr/local/sbin/mpif90...not found
    Checking for program /usr/local/bin/mpif90...not found
    Checking for program /usr/sbin/mpif90...not found
    Checking for program /usr/bin/mpif90...found
              Defined make macro "FPP" to "mpif90 -E"
Preprocessing source:
#define foo 10

Executing: mpif90 -E  -I/tmp/petsc-7m47ck2r/config.setCompilers  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Preprocess output before filtering:
Preprocess output after filtering:
=============================================================================================
TESTING: checkFortranComments from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:1970)
  Make sure fortran comment "!" works
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main
! comment

      end

          Fortran comments can use ! in column 1
=============================================================================================
TESTING: checkLargeFileIO from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:2166)
  check for large file support with 64-bit offset
=============================================================================================
TESTING: checkArchiver from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:2259)
  Check that the archiver exists and can make a library usable by the compiler
Detected Non-Microsoft Windows native compiler
Executing: ar -V
stdout:
GNU ar (GNU Binutils for Ubuntu) 2.34
Copyright (C) 2020 Free Software Foundation, Inc.
This program is free software; you may redistribute it under the terms of
the GNU General Public License version 3 or (at your option) any later version.
This program has absolutely no warranty.
Executing: ar -V
stdout:
GNU ar (GNU Binutils for Ubuntu) 2.34
Copyright (C) 2020 Free Software Foundation, Inc.
This program is free software; you may redistribute it under the terms of
the GNU General Public License version 3 or (at your option) any later version.
This program has absolutely no warranty.
                Defined make macro "FAST_AR_FLAGS" to "Scq"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int foo(int a) {
  return a+1;
}


    Checking for program /usr/local/sbin/ar...not found
    Checking for program /usr/local/bin/ar...not found
    Checking for program /usr/sbin/ar...not found
    Checking for program /usr/bin/ar...found
              Defined make macro "AR" to "/usr/bin/ar"
    Checking for program /usr/local/sbin/ranlib...not found
    Checking for program /usr/local/bin/ranlib...not found
    Checking for program /usr/sbin/ranlib...not found
    Checking for program /usr/bin/ranlib...found
              Defined make macro "RANLIB" to "/usr/bin/ranlib -c"
Executing: /usr/bin/ar cr /tmp/petsc-7m47ck2r/config.setCompilers/libconf1.a /tmp/petsc-7m47ck2r/config.setCompilers/conf1.o
Executing: /usr/bin/ranlib -c /tmp/petsc-7m47ck2r/config.setCompilers/libconf1.a
stdout: /usr/bin/ranlib: invalid option -- 'c'
Possible ERROR while running ranlib:exit code 0
stderr:
/usr/bin/ranlib: invalid option -- 'c'
          Ranlib is not functional with your archiver.  Try --with-ranlib=true if ranlib is unnecessary.
Executing: ar -V
stdout:
GNU ar (GNU Binutils for Ubuntu) 2.34
Copyright (C) 2020 Free Software Foundation, Inc.
This program is free software; you may redistribute it under the terms of
the GNU General Public License version 3 or (at your option) any later version.
This program has absolutely no warranty.
Executing: ar -V
stdout:
GNU ar (GNU Binutils for Ubuntu) 2.34
Copyright (C) 2020 Free Software Foundation, Inc.
This program is free software; you may redistribute it under the terms of
the GNU General Public License version 3 or (at your option) any later version.
This program has absolutely no warranty.
                Defined make macro "FAST_AR_FLAGS" to "Scq"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int foo(int a) {
  return a+1;
}


    Checking for program /usr/local/sbin/ar...not found
    Checking for program /usr/local/bin/ar...not found
    Checking for program /usr/sbin/ar...not found
    Checking for program /usr/bin/ar...found
              Defined make macro "AR" to "/usr/bin/ar"
    Checking for program /usr/local/sbin/ranlib...not found
    Checking for program /usr/local/bin/ranlib...not found
    Checking for program /usr/sbin/ranlib...not found
    Checking for program /usr/bin/ranlib...found
              Defined make macro "RANLIB" to "/usr/bin/ranlib"
Executing: /usr/bin/ar cr /tmp/petsc-7m47ck2r/config.setCompilers/libconf1.a /tmp/petsc-7m47ck2r/config.setCompilers/conf1.o
Executing: /usr/bin/ranlib /tmp/petsc-7m47ck2r/config.setCompilers/libconf1.a
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
extern int foo(int);

int main(void) {
  int b = foo(1);  (void)b;
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest    /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -L/tmp/petsc-7m47ck2r/config.setCompilers -lconf1 
            Defined make macro "AR_FLAGS" to "cr"
            Defined make macro "AR_LIB_SUFFIX" to "a"
=============================================================================================
TESTING: checkArchiverRecipeArgfile from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:2331)
  Checks if AR handles @ notation
Executing: /usr/bin/ar cr checkRecipeArgfile.a @checkRecipeArgfile.args
            Defined make macro "AR_ARGFILE" to "yes"
=============================================================================================
TESTING: checkSharedLinker from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:2413)
  Check that the linker can produce shared libraries
          Checking shared linker mpicc using flags ['-qmkshrobj']
    Checking for program /usr/local/sbin/mpicc...not found
    Checking for program /usr/local/bin/mpicc...not found
    Checking for program /usr/sbin/mpicc...not found
    Checking for program /usr/bin/mpicc...found
              Defined make macro "LD_SHARED" to "mpicc"
Executing: mpicc --help | head -n 20 
stdout:
Usage: gcc [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
Detected GNU compiler
Executing: mpicc -show
stdout: gcc -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi
          Trying C compiler flag -fPIC
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -fPIC 

Added C compiler flag -fPIC
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest  -qmkshrobj   -fPIC /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o 
stdout: gcc: error: unrecognized command line option ‘-qmkshrobj’
Possible ERROR while running linker: exit code 1
stderr:
gcc: error: unrecognized command line option ‘-qmkshrobj’
            Rejecting linker flag -qmkshrobj due to nonzero status from link
            Rejecting C linker flag -qmkshrobj due to 

gcc: error: unrecognized command line option ‘-qmkshrobj’

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
int (*fprintf_ptr)(FILE*,const char*,...) = fprintf;
int  foo(void){
  fprintf_ptr(stdout,"hello");
  return 0;
}
void bar(void){foo();}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/libconftest.so    -fPIC /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o 
stdout:
/usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/Scrt1.o: in function `_start':
(.text+0x24): undefined reference to `main'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/Scrt1.o: in function `_start':
(.text+0x24): undefined reference to `main'
collect2: error: ld returned 1 exit status
          Rejected C compiler flag -fPIC because it was not compatible with shared linker mpicc using flags ['-qmkshrobj']
          Trying C compiler flag 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers     /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with   

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest  -qmkshrobj   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o 
stdout: gcc: error: unrecognized command line option ‘-qmkshrobj’
Possible ERROR while running linker: exit code 1
stderr:
gcc: error: unrecognized command line option ‘-qmkshrobj’
            Rejecting linker flag -qmkshrobj due to nonzero status from link
            Rejecting C linker flag -qmkshrobj due to 

gcc: error: unrecognized command line option ‘-qmkshrobj’

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
int (*fprintf_ptr)(FILE*,const char*,...) = fprintf;
int  foo(void){
  fprintf_ptr(stdout,"hello");
  return 0;
}
void bar(void){foo();}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/libconftest.so    /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o 
stdout:
/usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/Scrt1.o: in function `_start':
(.text+0x24): undefined reference to `main'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/Scrt1.o: in function `_start':
(.text+0x24): undefined reference to `main'
collect2: error: ld returned 1 exit status
          Rejected C compiler flag  because it was not compatible with shared linker mpicc using flags ['-qmkshrobj']
            Deleting "LD_SHARED"
          Checking shared linker mpicc using flags ['-shared']
    Checking for program /usr/local/sbin/mpicc...not found
    Checking for program /usr/local/bin/mpicc...not found
    Checking for program /usr/sbin/mpicc...not found
    Checking for program /usr/bin/mpicc...found
              Defined make macro "LD_SHARED" to "mpicc"
Executing: mpicc --help | head -n 20 
stdout:
Usage: gcc [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
Detected GNU compiler
Executing: mpicc -show
stdout: gcc -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi
          Trying C compiler flag -fPIC
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -fPIC 

Added C compiler flag -fPIC
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest  -shared   -fPIC /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o 
            Valid C linker flag -shared
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
int (*fprintf_ptr)(FILE*,const char*,...) = fprintf;
int  foo(void){
  fprintf_ptr(stdout,"hello");
  return 0;
}
void bar(void){foo();}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/libconftest.so  -shared  -fPIC /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
int foo(void);

int main(void) {
int ret = foo();
if (ret) {}

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest    -fPIC /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o  -L/tmp/petsc-7m47ck2r/config.setCompilers -lconftest
          Using shared linker mpicc with flags ['-shared'] and library extension so
=============================================================================================
TESTING: checkPIC from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:2107)
  Determine the PIC option for each compiler
Executing: mpif90 --help | head -n 20 
stdout:
Usage: gfortran [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
Detected GNU compiler
Executing: mpif90 -show
stdout: gfortran -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi
          Trying FC compiler flag -fPIC for PIC code
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

              Output from compiling with  -fPIC 

Added FC compiler flag -fPIC
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      function foo(a)
      real:: a,x,bar
      common /xx/ x
      x=a
      foo = bar(x)
      end

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/libconftest.so  -shared  -fPIC /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o 
          Accepted FC compiler flag -fPIC for PIC code
Executing: mpicxx --help | head -n 20 
stdout:
Usage: g++ [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
Detected GNU compiler
Executing: mpicxx -show
stdout: g++ -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi
          Trying Cxx compiler flag -fPIC for PIC code
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   -std=gnu++17 -fPIC   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -std=gnu++17 -fPIC 

Added Cxx compiler flag -fPIC
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
int (*fprintf_ptr)(FILE*,const char*,...) = fprintf;
int  foo(void){
  fprintf_ptr(stdout,"hello");
  return 0;
}
void bar(void){foo();}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/libconftest.so  -shared  -fPIC /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o 
          Accepted Cxx compiler flag -fPIC for PIC code
=============================================================================================
TESTING: checkKandRFlags from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:2157)
  Check C compiler flags that allow compiling K and R code (needed for some external packages)
Executing: mpicc --help | head -n 20 
stdout:
Usage: gcc [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
Detected GNU compiler
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wno-implicit-int  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

            Output from compiling with  -fPIC -Wno-implicit-int

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wno-int-conversion  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

            Output from compiling with  -fPIC -Wno-int-conversion

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wno-implicit-function-declaration  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

            Output from compiling with  -fPIC -Wno-implicit-function-declaration

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wno-deprecated-non-prototype  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

            Output from compiling with  -fPIC -Wno-deprecated-non-prototype

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -fno-common  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

            Output from compiling with  -fPIC -fno-common

=============================================================================================
TESTING: checkSharedLinkerPaths from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:2532)
  Determine the shared linker path options
       - IRIX: -rpath
       - Linux, OSF: -Wl,-rpath,
       - Solaris: -R
       - FreeBSD: -Wl,-R,
Executing: mpicc -V
stdout:
gcc: error: unrecognized command line option ‘-V’
gcc: fatal error: no input files
compilation terminated.
          Trying C linker flag -Wl,-rpath,
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest  -Wl,-rpath,/u/pa/bg/ntilton/petsc   -fPIC /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o 
            Valid C linker flag -Wl,-rpath,/u/pa/bg/ntilton/petsc
Executing: mpicc -V
stdout:
gcc: error: unrecognized command line option ‘-V’
gcc: fatal error: no input files
compilation terminated.
          Trying Cxx linker flag -Wl,-rpath,
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicxx  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest  -Wl,-rpath,/u/pa/bg/ntilton/petsc   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o 
            Valid Cxx linker flag -Wl,-rpath,/u/pa/bg/ntilton/petsc
Executing: mpicc -V
stdout:
gcc: error: unrecognized command line option ‘-V’
gcc: fatal error: no input files
compilation terminated.
          Trying FC linker flag -Wl,-rpath,
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest  -Wl,-rpath,/u/pa/bg/ntilton/petsc   -fPIC /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o 
            Valid FC linker flag -Wl,-rpath,/u/pa/bg/ntilton/petsc
=============================================================================================
TESTING: checkLibC from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:2574)
  Test whether we need to explicitly include libc in shared linking
       - Mac OSX requires an explicit reference to libc for shared linking
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdlib.h> 
int foo(void) {void *chunk = malloc(31); free(chunk); return 0;}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/libconftest.so  -shared  -fPIC /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o 
          Shared linking does not require an explicit libc reference
=============================================================================================
TESTING: checkDynamicLinker from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:2620)
  Check that the linker can dynamically load shared libraries
Checking for header: dlfcn.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <dlfcn.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
              Defined "HAVE_DLFCN_H" to "1"
            Checking for functions [dlopen dlsym dlclose] in library [''] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char dlopen(void);
static void _check_dlopen(void) { dlopen(); }
char dlsym(void);
static void _check_dlsym(void) { dlsym(); }
char dlclose(void);
static void _check_dlclose(void) { dlclose(); }

int main(void) {
_check_dlopen();
_check_dlsym();
_check_dlclose();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC /tmp/petsc-7m47ck2r/config.libraries/conftest.o   
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_dlopen':
conftest.c:(.text+0x9): undefined reference to `dlopen'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_dlsym':
conftest.c:(.text+0x19): undefined reference to `dlsym'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_dlclose':
conftest.c:(.text+0x29): undefined reference to `dlclose'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_dlopen':
conftest.c:(.text+0x9): undefined reference to `dlopen'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_dlsym':
conftest.c:(.text+0x19): undefined reference to `dlsym'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_dlclose':
conftest.c:(.text+0x29): undefined reference to `dlclose'
collect2: error: ld returned 1 exit status
              Checking for functions [dlopen dlsym dlclose] in library ['dl'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char dlopen(void);
static void _check_dlopen(void) { dlopen(); }
char dlsym(void);
static void _check_dlsym(void) { dlsym(); }
char dlclose(void);
static void _check_dlclose(void) { dlclose(); }

int main(void) {
_check_dlopen();
_check_dlsym();
_check_dlclose();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char dlopen(void);
static void _check_dlopen(void) { dlopen(); }
char dlsym(void);
static void _check_dlsym(void) { dlsym(); }
char dlclose(void);
static void _check_dlclose(void) { dlclose(); }
void dummy(void) {_check_dlopen();
_check_dlsym();
_check_dlclose();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC  /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -ldl 
                Defined "HAVE_LIBDL" to "1"
            Adding ['dl'] to LIBS
          Checking dynamic linker mpicc using flags ['-shared']
    Checking for program /usr/local/sbin/mpicc...not found
    Checking for program /usr/local/bin/mpicc...not found
    Checking for program /usr/sbin/mpicc...not found
    Checking for program /usr/bin/mpicc...found
              Defined make macro "DYNAMICLINKER" to "mpicc"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest  -shared   -fPIC /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -ldl 
            Valid C linker flag -shared
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
int foo(void) {printf("test");return 0;}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/libconftest.so  -shared  -fPIC /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <dlfcn.h>
#include <stdio.h>

int main(void) {

void *handle = dlopen("/tmp/petsc-7m47ck2r/config.setCompilers/libconftest.so", 0);
int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo");

if (!foo) {
  printf("Could not load symbol\n");
  return -1;
}
if ((*foo)()) {
  printf("Invalid return from foo()\n");
  return -1;
}
if (dlclose(handle)) {
  printf("Could not close library\n");
  return -1;
}

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest    -fPIC /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -ldl 
          Using dynamic linker mpicc with flags ['-shared'] and library extension so
=============================================================================================
TESTING: checkPragma from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:2065)
  Check for all available applicable languages whether they complain (including warnings!) about potentially unknown pragmas
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wunknown-pragmas   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

                  Output from compiling with  -fPIC -Wunknown-pragmas 

Added C compiler flag -Wunknown-pragmas
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wunknown-pragmas  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#pragma GCC poison TEST

int main(void) {
  return 0;
}

Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wunknown-pragmas   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

                  Output from compiling with  -Wunknown-pragmas 

Added Cxx compiler flag -Wunknown-pragmas
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wunknown-pragmas  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#pragma GCC poison TEST

int main(void) {
  return 0;
}

=============================================================================================
TESTING: checkAtFileOption from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:2812)
  Check if linker supports @file option
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest  @/tmp/petsc-7m47ck2r/config.setCompilers/optfile   -fPIC /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -ldl 
            Valid C linker flag @/tmp/petsc-7m47ck2r/config.setCompilers/optfile
            Defined make macro "PCC_AT_FILE" to "1"
=============================================================================================
TESTING: output from config.setCompilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/setCompilers.py:2669)
  Output module data as defines and substitutions
            Substituting "CC" with "mpicc"
            Substituting "CFLAGS" with " -fPIC"
            Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath,"
            Substituting "CPP" with "mpicc -E"
            Substituting "CPPFLAGS" with ""
            Substituting "CXX" with "mpicxx"
            Substituting "CXX_CXXFLAGS" with " -std=gnu++17 -fPIC"
            Substituting "CXXFLAGS" with ""
            Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath,"
            Substituting "CXXPP" with "mpicxx -E"
            Substituting "CXXPPFLAGS" with ""
            Substituting "FC" with "mpif90"
            Substituting "FFLAGS" with " -fPIC"
            Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath,"
            Substituting "LDFLAGS" with ""
            Substituting "FPP" with "mpif90 -E"
            Substituting "FPPFLAGS" with ""
            Substituting "LIBS" with "-ldl "
            Substituting "SHARED_LIBRARY_FLAG" with "-shared"
    child config.setCompilers took 5.029798 seconds
=============================================================================================
TESTING: configureIndexSize from PETSc.options.indexTypes(/u/pa/bg/ntilton/petsc/config/PETSc/options/indexTypes.py:38)
  Determine the size of PETSc indices (32 or 64-bit), from -with-64-bit-indices
            Defined make macro "PETSC_INDEX_SIZE" to "32"
    child PETSc.options.indexTypes took 0.002000 seconds
=============================================================================================
TESTING: configureCompilerFlags from config.compilerFlags(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilerFlags.py:82)
  Get the default compiler flags
Executing: mpicc --version
stdout:
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
getCompilerVersion: mpicc gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
              Defined make macro "C_VERSION" to "gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0"
Executing: mpicc -show
stdout: gcc -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi
                Defined make macro "MPICC_SHOW" to "gcc -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi"
Executing: mpicc --help | head -n 20 
stdout:
Usage: gcc [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
Detected GNU compiler
Executing: mpicc --help | head -n 500
Executing: mpicc --version
stdout:
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Did not detect Gcc110plus compiler
Executing: mpicc --help | head -n 500
          Trying C compiler flag -Wall
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -fPIC -Wall 

Added C compiler flag -Wall
          Trying C compiler flag -Wwrite-strings
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -Wwrite-strings   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -fPIC -Wall -Wwrite-strings 

Added C compiler flag -Wwrite-strings
          Trying C compiler flag -Wno-unknown-pragmas
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas 

Added C compiler flag -Wno-unknown-pragmas
          Trying C compiler flag -Wno-lto-type-mismatch
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch 

Added C compiler flag -Wno-lto-type-mismatch
          Trying C compiler flag -fstack-protector
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector 

Added C compiler flag -fstack-protector
          Trying C compiler flag -mfp16-format=ieee
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -mfp16-format=ieee   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
stdout: gcc: error: unrecognized command line option ‘-mfp16-format=ieee’
Possible ERROR while running compiler: exit code 1
stderr:
gcc: error: unrecognized command line option ‘-mfp16-format=ieee’
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -mfp16-format=ieee 
gcc: error: unrecognized command line option ‘-mfp16-format=ieee’

PETSc Error: No output file produced
              Rejecting compiler flag -mfp16-format=ieee  due to nonzero status from link
          Rejected C compiler flag -mfp16-format=ieee
          Trying C compiler flag -fvisibility=hidden
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden 

Added C compiler flag -fvisibility=hidden
          Trying C compiler flag -Wall
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall 

Added C compiler flag -Wall
          Trying C compiler flag -Wwrite-strings
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings 

Added C compiler flag -Wwrite-strings
          Trying C compiler flag -Wno-unknown-pragmas
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas 

Added C compiler flag -Wno-unknown-pragmas
          Trying C compiler flag -Wno-lto-type-mismatch
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch 

Added C compiler flag -Wno-lto-type-mismatch
          Trying C compiler flag -fstack-protector
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector 

Added C compiler flag -fstack-protector
          Trying C compiler flag -mfp16-format=ieee
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -mfp16-format=ieee   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
stdout: gcc: error: unrecognized command line option ‘-mfp16-format=ieee’
Possible ERROR while running compiler: exit code 1
stderr:
gcc: error: unrecognized command line option ‘-mfp16-format=ieee’
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -mfp16-format=ieee 
gcc: error: unrecognized command line option ‘-mfp16-format=ieee’

PETSc Error: No output file produced
              Rejecting compiler flag -mfp16-format=ieee  due to nonzero status from link
          Rejected C compiler flag -mfp16-format=ieee
          Trying C compiler flag -fvisibility=hidden
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden 

Added C compiler flag -fvisibility=hidden
Executing: mpicc -show
stdout: gcc -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi
                Defined make macro "MPICC_SHOW" to "gcc -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi"
Executing: mpicc --help | head -n 20 
stdout:
Usage: gcc [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
Detected GNU compiler
          Trying C compiler flag -g3
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 

Added C compiler flag -g3
          Trying C compiler flag -O0
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 

Added C compiler flag -O0
Executing: mpicxx --version
stdout:
g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
getCompilerVersion: mpicxx g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
              Defined make macro "Cxx_VERSION" to "g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0"
Executing: mpicxx -show
stdout: g++ -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi
                Defined make macro "MPICXX_SHOW" to "g++ -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi"
Executing: mpicxx --help | head -n 20 
stdout:
Usage: g++ [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
Detected GNU compiler
Executing: mpicxx --help | head -n 20 
stdout:
Usage: g++ [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
Detected GNU compiler
Executing: mpicxx --version
stdout:
g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
          Trying Cxx compiler flag -Wall
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -Wall 

Added Cxx compiler flag -Wall
          Trying Cxx compiler flag -Wwrite-strings
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall -Wwrite-strings   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -Wall -Wwrite-strings 

Added Cxx compiler flag -Wwrite-strings
          Trying Cxx compiler flag -Wno-strict-aliasing
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall -Wwrite-strings -Wno-strict-aliasing   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -Wall -Wwrite-strings -Wno-strict-aliasing 

Added Cxx compiler flag -Wno-strict-aliasing
          Trying Cxx compiler flag -Wno-unknown-pragmas
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas 

Added Cxx compiler flag -Wno-unknown-pragmas
          Trying Cxx compiler flag -Wno-lto-type-mismatch
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch 

Added Cxx compiler flag -Wno-lto-type-mismatch
          Trying Cxx compiler flag -Wno-psabi
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi 

Added Cxx compiler flag -Wno-psabi
          Trying Cxx compiler flag -fstack-protector
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector 

Added Cxx compiler flag -fstack-protector
          Trying Cxx compiler flag -fvisibility=hidden
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden 

Added Cxx compiler flag -fvisibility=hidden
          Trying Cxx compiler flag -Wall
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall 

Added Cxx compiler flag -Wall
          Trying Cxx compiler flag -Wwrite-strings
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings 

Added Cxx compiler flag -Wwrite-strings
          Trying Cxx compiler flag -Wno-strict-aliasing
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing 

Added Cxx compiler flag -Wno-strict-aliasing
          Trying Cxx compiler flag -Wno-unknown-pragmas
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas 

Added Cxx compiler flag -Wno-unknown-pragmas
          Trying Cxx compiler flag -Wno-lto-type-mismatch
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch 

Added Cxx compiler flag -Wno-lto-type-mismatch
          Trying Cxx compiler flag -Wno-psabi
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi 

Added Cxx compiler flag -Wno-psabi
          Trying Cxx compiler flag -fstack-protector
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector 

Added Cxx compiler flag -fstack-protector
          Trying Cxx compiler flag -fvisibility=hidden
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden 

Added Cxx compiler flag -fvisibility=hidden
Executing: mpicxx -show
stdout: g++ -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi
                Defined make macro "MPICXX_SHOW" to "g++ -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi"
Executing: mpicxx --help | head -n 20 
stdout:
Usage: g++ [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
Detected GNU compiler
Executing: mpicxx --version
stdout:
g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
          Trying Cxx compiler flag -g
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g 

Added Cxx compiler flag -g
          Trying Cxx compiler flag -O0
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0   -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

              Output from compiling with  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0 

Added Cxx compiler flag -O0
Executing: mpif90 --version
stdout:
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
getCompilerVersion: mpif90 GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
              Defined make macro "FC_VERSION" to "GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0"
Executing: mpif90 -show
stdout: gfortran -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi
                Defined make macro "MPIFC_SHOW" to "gfortran -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi"
Executing: mpif90 --help | head -n 20 
stdout:
Usage: gfortran [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
Detected GNU compiler
Executing: mpif90 --version
stdout:
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Detected GFortran46plus compiler
Executing: mpif90 --version
stdout:
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Detected GFortran47plus compiler
Executing: mpif90 --version
stdout:
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Executing: mpif90 -v
stdout:
Using built-in specs.
COLLECT_GCC=/usr/bin/gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.4.0-1ubuntu1~20.04.2' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-9QDOt0/gcc-9-9.4.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.4.0 (Ubuntu 9.4.0-1ubuntu1~20.04.2)
          Trying FC compiler flag -Wall
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

              Output from compiling with  -fPIC -Wall 

Added FC compiler flag -Wall
          Trying FC compiler flag -ffree-line-length-none
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -ffree-line-length-none   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

              Output from compiling with  -fPIC -Wall -ffree-line-length-none 

Added FC compiler flag -ffree-line-length-none
          Trying FC compiler flag -ffree-line-length-0
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

              Output from compiling with  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 

Added FC compiler flag -ffree-line-length-0
          Trying FC compiler flag -Wno-lto-type-mismatch
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

              Output from compiling with  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch 

Added FC compiler flag -Wno-lto-type-mismatch
          Trying FC compiler flag -Wno-unused-dummy-argument
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

              Output from compiling with  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument 

Added FC compiler flag -Wno-unused-dummy-argument
          Trying FC compiler flag -Wall
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

              Output from compiling with  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall 

Added FC compiler flag -Wall
          Trying FC compiler flag -ffree-line-length-none
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

              Output from compiling with  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none 

Added FC compiler flag -ffree-line-length-none
          Trying FC compiler flag -ffree-line-length-0
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

              Output from compiling with  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 

Added FC compiler flag -ffree-line-length-0
          Trying FC compiler flag -Wno-lto-type-mismatch
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

              Output from compiling with  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch 

Added FC compiler flag -Wno-lto-type-mismatch
          Trying FC compiler flag -Wno-unused-dummy-argument
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

              Output from compiling with  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument 

Added FC compiler flag -Wno-unused-dummy-argument
Executing: mpif90 -show
stdout: gfortran -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi
                Defined make macro "MPIFC_SHOW" to "gfortran -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi"
Executing: mpif90 --help | head -n 20 
stdout:
Usage: gfortran [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
Detected GNU compiler
          Trying FC compiler flag -g
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

              Output from compiling with  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g 

Added FC compiler flag -g
          Trying FC compiler flag -O0
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

              Output from compiling with  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 

Added FC compiler flag -O0
=============================================================================================
TESTING: checkIntelHardwareSupport from config.compilerFlags(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilerFlags.py:176)
  Use Linux/macOS commands to determine what operations the hardware supports
Executing: lscpu
stdout:
Architecture:                         x86_64
CPU op-mode(s):                       32-bit, 64-bit
Byte Order:                           Little Endian
Address sizes:                        46 bits physical, 48 bits virtual
CPU(s):                               112
On-line CPU(s) list:                  0-111
Thread(s) per core:                   2
Core(s) per socket:                   28
Socket(s):                            2
NUMA node(s):                         2
Vendor ID:                            GenuineIntel
CPU family:                           6
Model:                                85
Model name:                           Intel(R) Xeon(R) Gold 6238R CPU @ 2.20GHz
Stepping:                             7
CPU MHz:                              2200.000
CPU max MHz:                          4000.0000
CPU min MHz:                          1000.0000
BogoMIPS:                             4400.00
Virtualization:                       VT-x
L1d cache:                            1.8 MiB
L1i cache:                            1.8 MiB
L2 cache:                             56 MiB
L3 cache:                             77 MiB
NUMA node0 CPU(s):                    0-27,56-83
NUMA node1 CPU(s):                    28-55,84-111
Vulnerability Gather data sampling:   Mitigation; Microcode
Vulnerability Itlb multihit:          KVM: Mitigation: VMX disabled
Vulnerability L1tf:                   Not affected
Vulnerability Mds:                    Not affected
Vulnerability Meltdown:               Not affected
Vulnerability Mmio stale data:        Mitigation; Clear CPU buffers; SMT vulnerable
Vulnerability Reg file data sampling: Not affected
Vulnerability Retbleed:               Mitigation; Enhanced IBRS
Vulnerability Spec rstack overflow:   Not affected
Vulnerability Spec store bypass:      Mitigation; Speculative Store Bypass disabled via prctl and seccomp
Vulnerability Spectre v1:             Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2:             Mitigation; Enhanced / Automatic IBRS; IBPB conditional; RSB filling; PBRSB-eIBRS SW sequence; BHI SW loop, KVM SW loop
Vulnerability Srbds:                  Not affected
Vulnerability Tsx async abort:        Mitigation; TSX disabled
Flags:                                fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc art arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm 3dnowprefetch cpuid_fault epb cat_l3 cdp_l3 invpcid_single intel_ppin ssbd mba ibrs ibpb stibp ibrs_enhanced tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 avx2 smep bmi2 erms invpcid cqm mpx rdt_a avx512f avx512dq rdseed adx smap clflushopt clwb intel_pt avx512cd avx512bw avx512vl xsaveopt xsavec xgetbv1 xsaves cqm_llc cqm_occup_llc cqm_mbm_total cqm_mbm_local dtherm ida arat pln pts hwp hwp_act_window hwp_epp hwp_pkg_req pku ospke avx512_vnni md_clear flush_l1d arch_capabilities
=============================================================================================
TESTING: checkCompilerMacros from config.compilerFlags(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilerFlags.py:167)
  Save the list of CPP macros defined by the C and C++ compiler, does not work for all compilers
Executing: mpicc -c -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilerFlags  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilerFlags/conftest.c  -E -dM 
stdout:
#define __DBL_MIN_EXP__ (-1021)
#define __FLT32X_MAX_EXP__ 1024
#define __UINT_LEAST16_MAX__ 0xffff
#define __ATOMIC_ACQUIRE 2
#define __FLT128_MAX_10_EXP__ 4932
#define __FLT_MIN__ 1.17549435082228750796873653722224568e-38F
#define __GCC_IEC_559_COMPLEX 2
#define __UINT_LEAST8_TYPE__ unsigned char
#define __SIZEOF_FLOAT80__ 16
#define __INTMAX_C(c) c ## L
#define __CHAR_BIT__ 8
#define __UINT8_MAX__ 0xff
#define __WINT_MAX__ 0xffffffffU
#define __FLT32_MIN_EXP__ (-125)
#define __ORDER_LITTLE_ENDIAN__ 1234
#define __SIZE_MAX__ 0xffffffffffffffffUL
#define __WCHAR_MAX__ 0x7fffffff
#define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1
#define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1
#define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1
#define __DBL_DENORM_MIN__ ((double)4.94065645841246544176568792868221372e-324L)
#define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1
#define __GCC_ATOMIC_CHAR_LOCK_FREE 2
#define __GCC_IEC_559 2
#define __FLT32X_DECIMAL_DIG__ 17
#define __FLT_EVAL_METHOD__ 0
#define __unix__ 1
#define __FLT64_DECIMAL_DIG__ 17
#define __CET__ 3
#define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2
#define __x86_64 1
#define __UINT_FAST64_MAX__ 0xffffffffffffffffUL
#define __SIG_ATOMIC_TYPE__ int
#define __DBL_MIN_10_EXP__ (-307)
#define __FINITE_MATH_ONLY__ 0
#define __GNUC_PATCHLEVEL__ 0
#define __FLT32_HAS_DENORM__ 1
#define __UINT_FAST8_MAX__ 0xff
#define __has_include(STR) __has_include__(STR)
#define __DEC64_MAX_EXP__ 385
#define __INT8_C(c) c
#define __INT_LEAST8_WIDTH__ 8
#define __UINT_LEAST64_MAX__ 0xffffffffffffffffUL
#define __SHRT_MAX__ 0x7fff
#define __LDBL_MAX__ 1.18973149535723176502126385303097021e+4932L
#define __FLT64X_MAX_10_EXP__ 4932
#define __UINT_LEAST8_MAX__ 0xff
#define __GCC_ATOMIC_BOOL_LOCK_FREE 2
#define __FLT128_DENORM_MIN__ 6.47517511943802511092443895822764655e-4966F128
#define __UINTMAX_TYPE__ long unsigned int
#define __linux 1
#define __DEC32_EPSILON__ 1E-6DF
#define __FLT_EVAL_METHOD_TS_18661_3__ 0
#define __unix 1
#define __UINT32_MAX__ 0xffffffffU
#define __LDBL_MAX_EXP__ 16384
#define __FLT128_MIN_EXP__ (-16381)
#define __WINT_MIN__ 0U
#define __linux__ 1
#define __FLT128_MIN_10_EXP__ (-4931)
#define __INT_LEAST16_WIDTH__ 16
#define __SCHAR_MAX__ 0x7f
#define __FLT128_MANT_DIG__ 113
#define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1)
#define __INT64_C(c) c ## L
#define __DBL_DIG__ 15
#define __GCC_ATOMIC_POINTER_LOCK_FREE 2
#define __FLT64X_MANT_DIG__ 64
#define __SIZEOF_INT__ 4
#define __SIZEOF_POINTER__ 8
#define __USER_LABEL_PREFIX__ 
#define __FLT64X_EPSILON__ 1.08420217248550443400745280086994171e-19F64x
#define __STDC_HOSTED__ 1
#define __LDBL_HAS_INFINITY__ 1
#define __FLT32_DIG__ 6
#define __FLT_EPSILON__ 1.19209289550781250000000000000000000e-7F
#define __SHRT_WIDTH__ 16
#define __LDBL_MIN__ 3.36210314311209350626267781732175260e-4932L
#define __STDC_UTF_16__ 1
#define __DEC32_MAX__ 9.999999E96DF
#define __FLT64X_DENORM_MIN__ 3.64519953188247460252840593361941982e-4951F64x
#define __FLT32X_HAS_INFINITY__ 1
#define __INT32_MAX__ 0x7fffffff
#define __INT_WIDTH__ 32
#define __SIZEOF_LONG__ 8
#define __STDC_IEC_559__ 1
#define __STDC_ISO_10646__ 201706L
#define __UINT16_C(c) c
#define __PTRDIFF_WIDTH__ 64
#define __DECIMAL_DIG__ 21
#define __FLT64_EPSILON__ 2.22044604925031308084726333618164062e-16F64
#define __gnu_linux__ 1
#define __INTMAX_WIDTH__ 64
#define __has_include_next(STR) __has_include_next__(STR)
#define __FLT64X_MIN_10_EXP__ (-4931)
#define __LDBL_HAS_QUIET_NAN__ 1
#define __FLT64_MANT_DIG__ 53
#define __GNUC__ 9
#define __MMX__ 1
#define __FLT_HAS_DENORM__ 1
#define __SIZEOF_LONG_DOUBLE__ 16
#define __BIGGEST_ALIGNMENT__ 16
#define __FLT64_MAX_10_EXP__ 308
#define __DBL_MAX__ ((double)1.79769313486231570814527423731704357e+308L)
#define __INT_FAST32_MAX__ 0x7fffffffffffffffL
#define __DBL_HAS_INFINITY__ 1
#define __HAVE_SPECULATION_SAFE_VALUE 1
#define __DEC32_MIN_EXP__ (-94)
#define __INTPTR_WIDTH__ 64
#define __FLT32X_HAS_DENORM__ 1
#define __INT_FAST16_TYPE__ long int
#define __LDBL_HAS_DENORM__ 1
#define __FLT128_HAS_INFINITY__ 1
#define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL
#define __INT_LEAST32_MAX__ 0x7fffffff
#define __DEC32_MIN__ 1E-95DF
#define __DBL_MAX_EXP__ 1024
#define __WCHAR_WIDTH__ 32
#define __FLT32_MAX__ 3.40282346638528859811704183484516925e+38F32
#define __DEC128_EPSILON__ 1E-33DL
#define __SSE2_MATH__ 1
#define __ATOMIC_HLE_RELEASE 131072
#define __PTRDIFF_MAX__ 0x7fffffffffffffffL
#define __amd64 1
#define __ATOMIC_HLE_ACQUIRE 65536
#define __FLT32_HAS_QUIET_NAN__ 1
#define __LONG_LONG_MAX__ 0x7fffffffffffffffLL
#define __SIZEOF_SIZE_T__ 8
#define __FLT64X_MIN_EXP__ (-16381)
#define __SIZEOF_WINT_T__ 4
#define __LONG_LONG_WIDTH__ 64
#define __FLT32_MAX_EXP__ 128
#define __GCC_HAVE_DWARF2_CFI_ASM 1
#define __GXX_ABI_VERSION 1013
#define __FLT_MIN_EXP__ (-125)
#define __FLT64X_HAS_QUIET_NAN__ 1
#define __INT_FAST64_TYPE__ long int
#define __FLT64_DENORM_MIN__ 4.94065645841246544176568792868221372e-324F64
#define __DBL_MIN__ ((double)2.22507385850720138309023271733240406e-308L)
#define __LP64__ 1
#define __FLT32X_EPSILON__ 2.22044604925031308084726333618164062e-16F32x
#define __DECIMAL_BID_FORMAT__ 1
#define __FLT64_MIN_EXP__ (-1021)
#define __FLT64_MIN_10_EXP__ (-307)
#define __FLT64X_DECIMAL_DIG__ 21
#define __DEC128_MIN__ 1E-6143DL
#define __REGISTER_PREFIX__ 
#define __UINT16_MAX__ 0xffff
#define __DBL_HAS_DENORM__ 1
#define __FLT32_MIN__ 1.17549435082228750796873653722224568e-38F32
#define __UINT8_TYPE__ unsigned char
#define __NO_INLINE__ 1
#define __FLT_MANT_DIG__ 24
#define __LDBL_DECIMAL_DIG__ 21
#define __VERSION__ "9.4.0"
#define __UINT64_C(c) c ## UL
#define _STDC_PREDEF_H 1
#define __GCC_ATOMIC_INT_LOCK_FREE 2
#define __FLT128_MAX_EXP__ 16384
#define __FLT32_MANT_DIG__ 24
#define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__
#define __STDC_IEC_559_COMPLEX__ 1
#define __FLT128_HAS_DENORM__ 1
#define __FLT128_DIG__ 33
#define __SCHAR_WIDTH__ 8
#define __INT32_C(c) c
#define __DEC64_EPSILON__ 1E-15DD
#define __ORDER_PDP_ENDIAN__ 3412
#define __DEC128_MIN_EXP__ (-6142)
#define __FLT32_MAX_10_EXP__ 38
#define __INT_FAST32_TYPE__ long int
#define __UINT_LEAST16_TYPE__ short unsigned int
#define __FLT64X_HAS_INFINITY__ 1
#define unix 1
#define __INT16_MAX__ 0x7fff
#define __SIZE_TYPE__ long unsigned int
#define __UINT64_MAX__ 0xffffffffffffffffUL
#define __FLT64X_DIG__ 18
#define __INT8_TYPE__ signed char
#define __ELF__ 1
#define __GCC_ASM_FLAG_OUTPUTS__ 1
#define __FLT_RADIX__ 2
#define __INT_LEAST16_TYPE__ short int
#define __LDBL_EPSILON__ 1.08420217248550443400745280086994171e-19L
#define __UINTMAX_C(c) c ## UL
#define __SSE_MATH__ 1
#define __k8 1
#define __SIG_ATOMIC_MAX__ 0x7fffffff
#define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2
#define __SIZEOF_PTRDIFF_T__ 8
#define __FLT32X_MANT_DIG__ 53
#define __x86_64__ 1
#define __FLT32X_MIN_EXP__ (-1021)
#define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF
#define __INT_FAST16_MAX__ 0x7fffffffffffffffL
#define __FLT64_DIG__ 15
#define __UINT_FAST32_MAX__ 0xffffffffffffffffUL
#define __UINT_LEAST64_TYPE__ long unsigned int
#define __FLT_HAS_QUIET_NAN__ 1
#define __FLT_MAX_10_EXP__ 38
#define __LONG_MAX__ 0x7fffffffffffffffL
#define __FLT64X_HAS_DENORM__ 1
#define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL
#define __FLT_HAS_INFINITY__ 1
#define __UINT_FAST16_TYPE__ long unsigned int
#define __DEC64_MAX__ 9.999999999999999E384DD
#define __INT_FAST32_WIDTH__ 64
#define __CHAR16_TYPE__ short unsigned int
#define __PRAGMA_REDEFINE_EXTNAME 1
#define __SIZE_WIDTH__ 64
#define __SEG_FS 1
#define __INT_LEAST16_MAX__ 0x7fff
#define __DEC64_MANT_DIG__ 16
#define __INT64_MAX__ 0x7fffffffffffffffL
#define __UINT_LEAST32_MAX__ 0xffffffffU
#define __SEG_GS 1
#define __FLT32_DENORM_MIN__ 1.40129846432481707092372958328991613e-45F32
#define __GCC_ATOMIC_LONG_LOCK_FREE 2
#define __SIG_ATOMIC_WIDTH__ 32
#define __INT_LEAST64_TYPE__ long int
#define __INT16_TYPE__ short int
#define __INT_LEAST8_TYPE__ signed char
#define __STDC_VERSION__ 201710L
#define __DEC32_MAX_EXP__ 97
#define __INT_FAST8_MAX__ 0x7f
#define __FLT128_MAX__ 1.18973149535723176508575932662800702e+4932F128
#define __INTPTR_MAX__ 0x7fffffffffffffffL
#define linux 1
#define __FLT64_HAS_QUIET_NAN__ 1
#define __FLT32_MIN_10_EXP__ (-37)
#define __SSE2__ 1
#define __FLT32X_DIG__ 15
#define __LDBL_MANT_DIG__ 64
#define __DBL_HAS_QUIET_NAN__ 1
#define __FLT64_HAS_INFINITY__ 1
#define __FLT64X_MAX__ 1.18973149535723176502126385303097021e+4932F64x
#define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1)
#define __code_model_small__ 1
#define __k8__ 1
#define __INTPTR_TYPE__ long int
#define __UINT16_TYPE__ short unsigned int
#define __WCHAR_TYPE__ int
#define __SIZEOF_FLOAT__ 4
#define __pic__ 2
#define __UINTPTR_MAX__ 0xffffffffffffffffUL
#define __INT_FAST64_WIDTH__ 64
#define __DEC64_MIN_EXP__ (-382)
#define __FLT32_DECIMAL_DIG__ 9
#define __INT_FAST64_MAX__ 0x7fffffffffffffffL
#define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1
#define __FLT_DIG__ 6
#define __FLT32_HAS_INFINITY__ 1
#define __FLT64X_MAX_EXP__ 16384
#define __UINT_FAST64_TYPE__ long unsigned int
#define __INT_MAX__ 0x7fffffff
#define __amd64__ 1
#define __INT64_TYPE__ long int
#define __FLT_MAX_EXP__ 128
#define __ORDER_BIG_ENDIAN__ 4321
#define __DBL_MANT_DIG__ 53
#define __SIZEOF_FLOAT128__ 16
#define __INT_LEAST64_MAX__ 0x7fffffffffffffffL
#define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2
#define __DEC64_MIN__ 1E-383DD
#define __WINT_TYPE__ unsigned int
#define __UINT_LEAST32_TYPE__ unsigned int
#define __SIZEOF_SHORT__ 2
#define __SSE__ 1
#define __LDBL_MIN_EXP__ (-16381)
#define __FLT64_MAX__ 1.79769313486231570814527423731704357e+308F64
#define __WINT_WIDTH__ 32
#define __INT_LEAST8_MAX__ 0x7f
#define __FLT32X_MAX_10_EXP__ 308
#define __SSP__ 1
#define __SIZEOF_INT128__ 16
#define __LDBL_MAX_10_EXP__ 4932
#define __ATOMIC_RELAXED 0
#define __DBL_EPSILON__ ((double)2.22044604925031308084726333618164062e-16L)
#define __FLT128_MIN__ 3.36210314311209350626267781732175260e-4932F128
#define _LP64 1
#define __UINT8_C(c) c
#define __FLT64_MAX_EXP__ 1024
#define __INT_LEAST32_TYPE__ int
#define __SIZEOF_WCHAR_T__ 4
#define __UINT64_TYPE__ long unsigned int
#define __FLT128_HAS_QUIET_NAN__ 1
#define __INT_FAST8_TYPE__ signed char
#define __FLT64X_MIN__ 3.36210314311209350626267781732175260e-4932F64x
#define __GNUC_STDC_INLINE__ 1
#define __FLT64_HAS_DENORM__ 1
#define __FLT32_EPSILON__ 1.19209289550781250000000000000000000e-7F32
#define __DBL_DECIMAL_DIG__ 17
#define __STDC_UTF_32__ 1
#define __INT_FAST8_WIDTH__ 8
#define __FXSR__ 1
#define __DEC_EVAL_METHOD__ 2
#define __FLT32X_MAX__ 1.79769313486231570814527423731704357e+308F32x
#define __UINT32_C(c) c ## U
#define __INTMAX_MAX__ 0x7fffffffffffffffL
#define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__
#define __FLT_DENORM_MIN__ 1.40129846432481707092372958328991613e-45F
#define __INT8_MAX__ 0x7f
#define __LONG_WIDTH__ 64
#define __PIC__ 2
#define __UINT_FAST32_TYPE__ long unsigned int
#define __CHAR32_TYPE__ unsigned int
#define __FLT_MAX__ 3.40282346638528859811704183484516925e+38F
#define __INT32_TYPE__ int
#define __SIZEOF_DOUBLE__ 8
#define __FLT_MIN_10_EXP__ (-37)
#define __FLT64_MIN__ 2.22507385850720138309023271733240406e-308F64
#define __INT_LEAST32_WIDTH__ 32
#define __INTMAX_TYPE__ long int
#define __DEC128_MAX_EXP__ 6145
#define __FLT32X_HAS_QUIET_NAN__ 1
#define __ATOMIC_CONSUME 1
#define __GNUC_MINOR__ 4
#define __INT_FAST16_WIDTH__ 64
#define __UINTMAX_MAX__ 0xffffffffffffffffUL
#define __DEC32_MANT_DIG__ 7
#define __FLT32X_DENORM_MIN__ 4.94065645841246544176568792868221372e-324F32x
#define __DBL_MAX_10_EXP__ 308
#define __LDBL_DENORM_MIN__ 3.64519953188247460252840593361941982e-4951L
#define __INT16_C(c) c
#define __STDC__ 1
#define __PTRDIFF_TYPE__ long int
#define __ATOMIC_SEQ_CST 5
#define __UINT32_TYPE__ unsigned int
#define __FLT32X_MIN_10_EXP__ (-307)
#define __UINTPTR_TYPE__ long unsigned int
#define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD
#define __DEC128_MANT_DIG__ 34
#define __LDBL_MIN_10_EXP__ (-4931)
#define __FLT128_EPSILON__ 1.92592994438723585305597794258492732e-34F128
#define __SIZEOF_LONG_LONG__ 8
#define __FLT128_DECIMAL_DIG__ 36
#define __GCC_ATOMIC_LLONG_LOCK_FREE 2
#define __FLT32X_MIN__ 2.22507385850720138309023271733240406e-308F32x
#define __LDBL_DIG__ 18
#define __FLT_DECIMAL_DIG__ 9
#define __UINT_FAST16_MAX__ 0xffffffffffffffffUL
#define __GCC_ATOMIC_SHORT_LOCK_FREE 2
#define __INT_LEAST64_WIDTH__ 64
#define __UINT_FAST8_TYPE__ unsigned char
#define __ATOMIC_ACQ_REL 4
#define __ATOMIC_RELEASE 3
Executing: mpicxx -c -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilerFlags  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.compilerFlags/conftest.cc  -E -dM 
stdout:
#define __DBL_MIN_EXP__ (-1021)
#define __FLT32X_MAX_EXP__ 1024
#define __cpp_attributes 200809
#define __cpp_nontype_template_parameter_auto 201606
#define __UINT_LEAST16_MAX__ 0xffff
#define __ATOMIC_ACQUIRE 2
#define __FLT128_MAX_10_EXP__ 4932
#define __FLT_MIN__ 1.17549435082228750796873653722224568e-38F
#define __GCC_IEC_559_COMPLEX 2
#define __cpp_aggregate_nsdmi 201304
#define __UINT_LEAST8_TYPE__ unsigned char
#define __SIZEOF_FLOAT80__ 16
#define __INTMAX_C(c) c ## L
#define __CHAR_BIT__ 8
#define __UINT8_MAX__ 0xff
#define __WINT_MAX__ 0xffffffffU
#define __FLT32_MIN_EXP__ (-125)
#define __cpp_static_assert 201411
#define __ORDER_LITTLE_ENDIAN__ 1234
#define __SIZE_MAX__ 0xffffffffffffffffUL
#define __WCHAR_MAX__ 0x7fffffff
#define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1
#define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1
#define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1
#define __DBL_DENORM_MIN__ double(4.94065645841246544176568792868221372e-324L)
#define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1
#define __GCC_ATOMIC_CHAR_LOCK_FREE 2
#define __GCC_IEC_559 2
#define __FLT32X_DECIMAL_DIG__ 17
#define __FLT_EVAL_METHOD__ 0
#define __cpp_enumerator_attributes 201411
#define __unix__ 1
#define __cpp_binary_literals 201304
#define __FLT64_DECIMAL_DIG__ 17
#define __CET__ 3
#define __cpp_noexcept_function_type 201510
#define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2
#define __x86_64 1
#define __cpp_variadic_templates 200704
#define __UINT_FAST64_MAX__ 0xffffffffffffffffUL
#define __SIG_ATOMIC_TYPE__ int
#define __DBL_MIN_10_EXP__ (-307)
#define __FINITE_MATH_ONLY__ 0
#define __cpp_variable_templates 201304
#define __GNUC_PATCHLEVEL__ 0
#define __FLT32_HAS_DENORM__ 1
#define __UINT_FAST8_MAX__ 0xff
#define __cpp_rvalue_reference 200610
#define __has_include(STR) __has_include__(STR)
#define __FLT32_MAX_10_EXP__ 38
#define __DEC64_MAX_EXP__ 385
#define __INT8_C(c) c
#define __INT_LEAST8_WIDTH__ 8
#define __cpp_variadic_using 201611
#define __UINT_LEAST64_MAX__ 0xffffffffffffffffUL
#define __cpp_capture_star_this 201603
#define __SHRT_MAX__ 0x7fff
#define __LDBL_MAX__ 1.18973149535723176502126385303097021e+4932L
#define __FLT64X_MAX_10_EXP__ 4932
#define __cpp_if_constexpr 201606
#define __UINT_LEAST8_MAX__ 0xff
#define __GCC_ATOMIC_BOOL_LOCK_FREE 2
#define __FLT128_DENORM_MIN__ 6.47517511943802511092443895822764655e-4966F128
#define __UINTMAX_TYPE__ long unsigned int
#define __linux 1
#define __DEC32_EPSILON__ 1E-6DF
#define __FLT_EVAL_METHOD_TS_18661_3__ 0
#define __unix 1
#define __UINT32_MAX__ 0xffffffffU
#define __GXX_EXPERIMENTAL_CXX0X__ 1
#define __LDBL_MAX_EXP__ 16384
#define __FLT128_MIN_EXP__ (-16381)
#define __WINT_MIN__ 0U
#define __linux__ 1
#define __FLT128_MIN_10_EXP__ (-4931)
#define __INT_LEAST16_WIDTH__ 16
#define __SCHAR_MAX__ 0x7f
#define __FLT128_MANT_DIG__ 113
#define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1)
#define __INT64_C(c) c ## L
#define __DBL_DIG__ 15
#define __GCC_ATOMIC_POINTER_LOCK_FREE 2
#define __FLT64X_MANT_DIG__ 64
#define __SIZEOF_INT__ 4
#define __SIZEOF_POINTER__ 8
#define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2
#define __cpp_aligned_new 201606
#define __USER_LABEL_PREFIX__ 
#define __FLT64X_EPSILON__ 1.08420217248550443400745280086994171e-19F64x
#define __STDC_HOSTED__ 1
#define __LDBL_HAS_INFINITY__ 1
#define __FLT32_DIG__ 6
#define __FLT_EPSILON__ 1.19209289550781250000000000000000000e-7F
#define __GXX_WEAK__ 1
#define __SHRT_WIDTH__ 16
#define __LDBL_MIN__ 3.36210314311209350626267781732175260e-4932L
#define __DEC32_MAX__ 9.999999E96DF
#define __cpp_threadsafe_static_init 200806
#define __FLT64X_DENORM_MIN__ 3.64519953188247460252840593361941982e-4951F64x
#define __FLT32X_HAS_INFINITY__ 1
#define __INT32_MAX__ 0x7fffffff
#define __INT_WIDTH__ 32
#define __SIZEOF_LONG__ 8
#define __STDC_IEC_559__ 1
#define __STDC_ISO_10646__ 201706L
#define __UINT16_C(c) c
#define __PTRDIFF_WIDTH__ 64
#define __DECIMAL_DIG__ 21
#define __FLT64_EPSILON__ 2.22044604925031308084726333618164062e-16F64
#define __gnu_linux__ 1
#define __INTMAX_WIDTH__ 64
#define __FLT64_MIN_EXP__ (-1021)
#define __has_include_next(STR) __has_include_next__(STR)
#define __FLT64X_MIN_10_EXP__ (-4931)
#define __LDBL_HAS_QUIET_NAN__ 1
#define __FLT64_MANT_DIG__ 53
#define __GNUC__ 9
#define __GXX_RTTI 1
#define __MMX__ 1
#define __cpp_delegating_constructors 200604
#define __FLT_HAS_DENORM__ 1
#define __SIZEOF_LONG_DOUBLE__ 16
#define __BIGGEST_ALIGNMENT__ 16
#define __STDC_UTF_16__ 1
#define __FLT64_MAX_10_EXP__ 308
#define __FLT32_HAS_INFINITY__ 1
#define __DBL_MAX__ double(1.79769313486231570814527423731704357e+308L)
#define __cpp_raw_strings 200710
#define __INT_FAST32_MAX__ 0x7fffffffffffffffL
#define __DBL_HAS_INFINITY__ 1
#define __cpp_deduction_guides 201703
#define __HAVE_SPECULATION_SAFE_VALUE 1
#define __cpp_fold_expressions 201603
#define __DEC32_MIN_EXP__ (-94)
#define __INTPTR_WIDTH__ 64
#define __FLT32X_HAS_DENORM__ 1
#define __INT_FAST16_TYPE__ long int
#define __LDBL_HAS_DENORM__ 1
#define __cplusplus 201703L
#define __cpp_ref_qualifiers 200710
#define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL
#define __INT_LEAST32_MAX__ 0x7fffffff
#define __DEC32_MIN__ 1E-95DF
#define __DEPRECATED 1
#define __cpp_rvalue_references 200610
#define __DBL_MAX_EXP__ 1024
#define __WCHAR_WIDTH__ 32
#define __FLT32_MAX__ 3.40282346638528859811704183484516925e+38F32
#define __DEC128_EPSILON__ 1E-33DL
#define __SSE2_MATH__ 1
#define __ATOMIC_HLE_RELEASE 131072
#define __PTRDIFF_MAX__ 0x7fffffffffffffffL
#define __amd64 1
#define __ATOMIC_HLE_ACQUIRE 65536
#define __FLT32_HAS_QUIET_NAN__ 1
#define __GNUG__ 9
#define __LONG_LONG_MAX__ 0x7fffffffffffffffLL
#define __SIZEOF_SIZE_T__ 8
#define __cpp_nsdmi 200809
#define __FLT64X_MIN_EXP__ (-16381)
#define __SIZEOF_WINT_T__ 4
#define __LONG_LONG_WIDTH__ 64
#define __cpp_initializer_lists 200806
#define __FLT32_MAX_EXP__ 128
#define __cpp_hex_float 201603
#define __GCC_HAVE_DWARF2_CFI_ASM 1
#define __GXX_ABI_VERSION 1013
#define __FLT128_HAS_INFINITY__ 1
#define __FLT_MIN_EXP__ (-125)
#define __cpp_lambdas 200907
#define __FLT64X_HAS_QUIET_NAN__ 1
#define __INT_FAST64_TYPE__ long int
#define __FLT64_DENORM_MIN__ 4.94065645841246544176568792868221372e-324F64
#define __DBL_MIN__ double(2.22507385850720138309023271733240406e-308L)
#define __LP64__ 1
#define __FLT32X_EPSILON__ 2.22044604925031308084726333618164062e-16F32x
#define __DECIMAL_BID_FORMAT__ 1
#define __FLT64_MIN_10_EXP__ (-307)
#define __FLT64X_DECIMAL_DIG__ 21
#define __DEC128_MIN__ 1E-6143DL
#define __REGISTER_PREFIX__ 
#define __UINT16_MAX__ 0xffff
#define __FLT32_MIN__ 1.17549435082228750796873653722224568e-38F32
#define __UINT8_TYPE__ unsigned char
#define __NO_INLINE__ 1
#define __FLT_MANT_DIG__ 24
#define __LDBL_DECIMAL_DIG__ 21
#define __VERSION__ "9.4.0"
#define __UINT64_C(c) c ## UL
#define __cpp_unicode_characters 201411
#define _STDC_PREDEF_H 1
#define __cpp_decltype_auto 201304
#define __GCC_ATOMIC_INT_LOCK_FREE 2
#define __FLT128_MAX_EXP__ 16384
#define __FLT32_MANT_DIG__ 24
#define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__
#define __cpp_aggregate_bases 201603
#define __STDC_IEC_559_COMPLEX__ 1
#define __FLT128_HAS_DENORM__ 1
#define __FLT128_DIG__ 33
#define __SCHAR_WIDTH__ 8
#define __INT32_C(c) c
#define __DEC64_EPSILON__ 1E-15DD
#define __ORDER_PDP_ENDIAN__ 3412
#define __DEC128_MIN_EXP__ (-6142)
#define __cpp_nested_namespace_definitions 201411
#define __INT_FAST32_TYPE__ long int
#define __UINT_LEAST16_TYPE__ short unsigned int
#define __FLT64X_HAS_INFINITY__ 1
#define unix 1
#define __DBL_HAS_DENORM__ 1
#define __INT16_MAX__ 0x7fff
#define __cpp_rtti 199711
#define __SIZE_TYPE__ long unsigned int
#define __UINT64_MAX__ 0xffffffffffffffffUL
#define __FLT64X_DIG__ 18
#define __INT8_TYPE__ signed char
#define __cpp_digit_separators 201309
#define __ELF__ 1
#define __GCC_ASM_FLAG_OUTPUTS__ 1
#define __FLT_RADIX__ 2
#define __INT_LEAST16_TYPE__ short int
#define __LDBL_EPSILON__ 1.08420217248550443400745280086994171e-19L
#define __UINTMAX_C(c) c ## UL
#define __GLIBCXX_BITSIZE_INT_N_0 128
#define __k8 1
#define __SIG_ATOMIC_MAX__ 0x7fffffff
#define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2
#define __SIZEOF_PTRDIFF_T__ 8
#define __FLT32X_MANT_DIG__ 53
#define __x86_64__ 1
#define __FLT32X_MIN_EXP__ (-1021)
#define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF
#define __INT_FAST16_MAX__ 0x7fffffffffffffffL
#define __FLT64_DIG__ 15
#define __UINT_FAST32_MAX__ 0xffffffffffffffffUL
#define __UINT_LEAST64_TYPE__ long unsigned int
#define __FLT_HAS_QUIET_NAN__ 1
#define __FLT_MAX_10_EXP__ 38
#define __LONG_MAX__ 0x7fffffffffffffffL
#define __FLT64X_HAS_DENORM__ 1
#define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL
#define __FLT_HAS_INFINITY__ 1
#define __cpp_unicode_literals 200710
#define __UINT_FAST16_TYPE__ long unsigned int
#define __DEC64_MAX__ 9.999999999999999E384DD
#define __INT_FAST32_WIDTH__ 64
#define __CHAR16_TYPE__ short unsigned int
#define __PRAGMA_REDEFINE_EXTNAME 1
#define __SIZE_WIDTH__ 64
#define __SEG_FS 1
#define __INT_LEAST16_MAX__ 0x7fff
#define __DEC64_MANT_DIG__ 16
#define __INT64_MAX__ 0x7fffffffffffffffL
#define __UINT_LEAST32_MAX__ 0xffffffffU
#define __SEG_GS 1
#define __FLT32_DENORM_MIN__ 1.40129846432481707092372958328991613e-45F32
#define __GCC_ATOMIC_LONG_LOCK_FREE 2
#define __SIG_ATOMIC_WIDTH__ 32
#define __INT_LEAST64_TYPE__ long int
#define __INT16_TYPE__ short int
#define __INT_LEAST8_TYPE__ signed char
#define __cpp_structured_bindings 201606
#define __DEC32_MAX_EXP__ 97
#define __INT_FAST8_MAX__ 0x7f
#define __FLT128_MAX__ 1.18973149535723176508575932662800702e+4932F128
#define __INTPTR_MAX__ 0x7fffffffffffffffL
#define __cpp_sized_deallocation 201309
#define __cpp_guaranteed_copy_elision 201606
#define linux 1
#define __cpp_range_based_for 201603
#define __FLT64_HAS_QUIET_NAN__ 1
#define __FLT32_MIN_10_EXP__ (-37)
#define __SSE2__ 1
#define __EXCEPTIONS 1
#define __LDBL_MANT_DIG__ 64
#define __DBL_HAS_QUIET_NAN__ 1
#define __FLT64_HAS_INFINITY__ 1
#define __FLT64X_MAX__ 1.18973149535723176502126385303097021e+4932F64x
#define __STDCPP_DEFAULT_NEW_ALIGNMENT__ 16
#define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1)
#define __code_model_small__ 1
#define __cpp_nontype_template_args 201411
#define __cpp_return_type_deduction 201304
#define __k8__ 1
#define __INTPTR_TYPE__ long int
#define __UINT16_TYPE__ short unsigned int
#define __WCHAR_TYPE__ int
#define __SIZEOF_FLOAT__ 4
#define __pic__ 2
#define __UINTPTR_MAX__ 0xffffffffffffffffUL
#define __INT_FAST64_WIDTH__ 64
#define __DEC64_MIN_EXP__ (-382)
#define __cpp_decltype 200707
#define __FLT32_DECIMAL_DIG__ 9
#define __INT_FAST64_MAX__ 0x7fffffffffffffffL
#define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1
#define __FLT_DIG__ 6
#define __FLT64X_MAX_EXP__ 16384
#define __UINT_FAST64_TYPE__ long unsigned int
#define __cpp_inline_variables 201606
#define __INT_MAX__ 0x7fffffff
#define __amd64__ 1
#define __INT64_TYPE__ long int
#define __FLT_MAX_EXP__ 128
#define __ORDER_BIG_ENDIAN__ 4321
#define __DBL_MANT_DIG__ 53
#define __cpp_inheriting_constructors 201511
#define __SIZEOF_FLOAT128__ 16
#define __INT_LEAST64_MAX__ 0x7fffffffffffffffL
#define __DEC64_MIN__ 1E-383DD
#define __WINT_TYPE__ unsigned int
#define __UINT_LEAST32_TYPE__ unsigned int
#define __SIZEOF_SHORT__ 2
#define __SSE__ 1
#define __LDBL_MIN_EXP__ (-16381)
#define __FLT64_MAX__ 1.79769313486231570814527423731704357e+308F64
#define __WINT_WIDTH__ 32
#define __cpp_template_auto 201606
#define __INT_LEAST8_MAX__ 0x7f
#define __FLT32X_MAX_10_EXP__ 308
#define __SSP__ 1
#define __SIZEOF_INT128__ 16
#define __LDBL_MAX_10_EXP__ 4932
#define __ATOMIC_RELAXED 0
#define __DBL_EPSILON__ double(2.22044604925031308084726333618164062e-16L)
#define __FLT128_MIN__ 3.36210314311209350626267781732175260e-4932F128
#define _LP64 1
#define __UINT8_C(c) c
#define __FLT64_MAX_EXP__ 1024
#define __INT_LEAST32_TYPE__ int
#define __SIZEOF_WCHAR_T__ 4
#define __FLT128_HAS_QUIET_NAN__ 1
#define __INT_FAST8_TYPE__ signed char
#define __FLT64X_MIN__ 3.36210314311209350626267781732175260e-4932F64x
#define __GNUC_STDC_INLINE__ 1
#define __FLT64_HAS_DENORM__ 1
#define __FLT32_EPSILON__ 1.19209289550781250000000000000000000e-7F32
#define __DBL_DECIMAL_DIG__ 17
#define __STDC_UTF_32__ 1
#define __INT_FAST8_WIDTH__ 8
#define __FXSR__ 1
#define __DEC_EVAL_METHOD__ 2
#define __FLT32X_MAX__ 1.79769313486231570814527423731704357e+308F32x
#define __cpp_runtime_arrays 198712
#define __UINT64_TYPE__ long unsigned int
#define __cpp_namespace_attributes 201411
#define __UINT32_C(c) c ## U
#define __INTMAX_MAX__ 0x7fffffffffffffffL
#define __cpp_alias_templates 200704
#define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__
#define __FLT_DENORM_MIN__ 1.40129846432481707092372958328991613e-45F
#define __INT8_MAX__ 0x7f
#define __LONG_WIDTH__ 64
#define __PIC__ 2
#define __UINT_FAST32_TYPE__ long unsigned int
#define __CHAR32_TYPE__ unsigned int
#define __FLT_MAX__ 3.40282346638528859811704183484516925e+38F
#define __cpp_constexpr 201603
#define __INT32_TYPE__ int
#define __SIZEOF_DOUBLE__ 8
#define __cpp_exceptions 199711
#define __FLT_MIN_10_EXP__ (-37)
#define __FLT64_MIN__ 2.22507385850720138309023271733240406e-308F64
#define __INT_LEAST32_WIDTH__ 32
#define __INTMAX_TYPE__ long int
#define __DEC128_MAX_EXP__ 6145
#define __FLT32X_HAS_QUIET_NAN__ 1
#define __ATOMIC_CONSUME 1
#define __GNUC_MINOR__ 4
#define __GLIBCXX_TYPE_INT_N_0 __int128
#define __INT_FAST16_WIDTH__ 64
#define __UINTMAX_MAX__ 0xffffffffffffffffUL
#define __DEC32_MANT_DIG__ 7
#define __FLT32X_DENORM_MIN__ 4.94065645841246544176568792868221372e-324F32x
#define __cpp_template_template_args 201611
#define __DBL_MAX_10_EXP__ 308
#define __LDBL_DENORM_MIN__ 3.64519953188247460252840593361941982e-4951L
#define __INT16_C(c) c
#define __cpp_generic_lambdas 201304
#define __STDC__ 1
#define __FLT32X_DIG__ 15
#define __PTRDIFF_TYPE__ long int
#define __ATOMIC_SEQ_CST 5
#define __UINT32_TYPE__ unsigned int
#define __FLT32X_MIN_10_EXP__ (-307)
#define __UINTPTR_TYPE__ long unsigned int
#define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD
#define __DEC128_MANT_DIG__ 34
#define __LDBL_MIN_10_EXP__ (-4931)
#define __FLT128_EPSILON__ 1.92592994438723585305597794258492732e-34F128
#define __SSE_MATH__ 1
#define __SIZEOF_LONG_LONG__ 8
#define __cpp_user_defined_literals 200809
#define __FLT128_DECIMAL_DIG__ 36
#define __GCC_ATOMIC_LLONG_LOCK_FREE 2
#define __FLT32X_MIN__ 2.22507385850720138309023271733240406e-308F32x
#define __LDBL_DIG__ 18
#define __FLT_DECIMAL_DIG__ 9
#define __UINT_FAST16_MAX__ 0xffffffffffffffffUL
#define __GCC_ATOMIC_SHORT_LOCK_FREE 2
#define __INT_LEAST64_WIDTH__ 64
#define __UINT_FAST8_TYPE__ unsigned char
#define _GNU_SOURCE 1
#define __cpp_init_captures 201304
#define __ATOMIC_ACQ_REL 4
#define __ATOMIC_RELEASE 3
    child config.compilerFlags took 2.436490 seconds
Executing: mpicc --help | head -n 20 
stdout:
Usage: gcc [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
Detected GNU compiler
=============================================================================================
TESTING: checkLinux from config.compilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilers.py:1398)
  Check for __linux__
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

    #if !defined(__linux__)
    #error "__linux__ not defined"
    #endif
    

int main(void) {
  return 0;
}

            Defined "HAVE_LINUX" to "1"
=============================================================================================
TESTING: checkC99Flag from config.compilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilers.py:1409)
  Check for -std=c99 or equivalent flag
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <float.h>

int main(void) {

    float x[2],y;
    float *restrict z = &y;
    y = FLT_ROUNDS;
    // c++ comment
    int j = 2;
    for (int i=0; i<2; i++){
      x[i] = i*j*(*z);
    }
    (void)x;
  return 0;
}

            Output from compiling with  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 

          Accepted C99 compile flag: 
=============================================================================================
TESTING: checkCFormatting from config.compilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilers.py:371)
  Activate format string checking if using the GNU compilers
=============================================================================================
TESTING: checkDynamicLoadFlag from config.compilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilers.py:382)
  Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <dlfcn.h>
char *libname;

int main(void) {
dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL);
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.compilers/conftest.o -ldl 
            Defined "HAVE_RTLD_LAZY" to "1"
            Defined "HAVE_RTLD_NOW" to "1"
            Defined "HAVE_RTLD_LOCAL" to "1"
            Defined "HAVE_RTLD_GLOBAL" to "1"
=============================================================================================
TESTING: checkStdAtomic from config.compilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilers.py:1442)
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

    #if defined(__cplusplus)
    #include <atomic>
    using namespace std;
    #else
    #include <stdatomic.h>
    #endif
    double dcount = 0;
    atomic_flag cat = ATOMIC_FLAG_INIT;
    

int main(void) {

    do {} while (atomic_flag_test_and_set(&cat));
    dcount++;
    atomic_flag_clear(&cat);
    
  return 0;
}

            Defined "HAVE_STDATOMIC_H" to "1"
=============================================================================================
TESTING: checkCLibraries from config.compilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilers.py:170)
  Determines the libraries needed to link using the C++ or Fortran compiler C source code compiled with C. Result is stored in clibs
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
void asub(void)
{char s[16];printf("testing %s",s);}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o -ldl 
          C libraries are not needed when using Fortran linker
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
void asub(void)
{char s[16];printf("testing %s",s);}

Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.compilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
 int main(int argc,char **args)
{(void)argc, (void)args; return 0;}
 
Executing: mpicxx  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o -ldl 
          C libraries are not needed when using C++ linker
=============================================================================================
TESTING: checkDependencyGenerationFlag from config.compilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilers.py:1349)
  Check if -MMD works for dependency generation, and add it if it does
          Trying C compiler flag -MMD -MP
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 -MMD -MP  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

            Output from compiling with  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 -MMD -MP

            Defined make macro "C_DEPFLAGS" to "-MMD -MP"
          Trying Cxx compiler flag -MMD -MP
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC -MMD -MP  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

            Output from compiling with  -std=gnu++17 -fPIC -MMD -MP

            Defined make macro "CXX_DEPFLAGS" to "-MMD -MP"
Executing: mpicxx --help | head -n 20 
stdout:
Usage: g++ [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
Detected GNU compiler
=============================================================================================
TESTING: checkCxxRestrict from config.compilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilers.py:125)
  Check for the CXX restrict keyword equivalent to C99 restrict
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.compilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
float * __restrict x;
(void)x;
  return 0;
}

          compilers: Set Cxx restrict keyword to : __restrict
            Defined "CXX_RESTRICT" to "__restrict"
Executing: mpicxx --help | head -n 500
=============================================================================================
TESTING: checkCxxOptionalExtensions from config.compilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilers.py:401)
  Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0    -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
class somename { public: int i; };
somename b;
b.i = 0;
(void)b.i;
  return 0;
}

              Output from compiling with  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  

=============================================================================================
TESTING: checkCxxComplexFix from config.compilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilers.py:428)
  Determine if the CXX compiler supports utilities provided by petsccxxcomplexfix.h
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.compilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

      #include <iostream>
      #include <complex>
      #define Type         int
      #define PetscReal    double
      #define PetscComplex std::complex<double>
      /* The two lines, from petsccxxcomplexfix.h, can cause the combination "C++14 + GCC-4.x libstdc++ library" to fail, complaining imag()
         is not marked const. If the compiler can compile these two lines, it should be able to compile other lines.
      */
      static inline PetscComplex operator-(const Type& lhs, const PetscComplex& rhs) { return PetscReal(lhs) - const_cast<PetscComplex&>(rhs); }
      static inline PetscComplex operator/(const Type& lhs, const PetscComplex& rhs) { return PetscReal(lhs) / const_cast<PetscComplex&>(rhs); }
      

int main(void) {

      Type x = 2;
      PetscComplex y(1.0,1.0),z,w;
      z = x - y;
      w = x / y;
      std::cout << z << w;
      
  return 0;
}

          the CXX compiler supports petsccxxcomplexfix.h
            Defined "HAVE_CXX_COMPLEX_FIX" to "1"
=============================================================================================
TESTING: checkStdAtomic from config.compilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilers.py:1442)
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

    #if defined(__cplusplus)
    #include <atomic>
    using namespace std;
    #else
    #include <stdatomic.h>
    #endif
    double dcount = 0;
    atomic_flag cat = ATOMIC_FLAG_INIT;
    

int main(void) {

    do {} while (atomic_flag_test_and_set(&cat));
    dcount++;
    atomic_flag_clear(&cat);
    
  return 0;
}

            Defined "HAVE_CXX_ATOMIC" to "1"
=============================================================================================
TESTING: checkCxxLibraries from config.compilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilers.py:457)
  Determines the libraries needed to link using the C or Fortran compiler C++ source code compiled with C++. Result is stored in cxxlibs
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.compilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <iostream>
#include <vector>
void asub(void)
{std::vector<int> v;
try  { throw 20;  }  catch (int e)  { std::cout << "An exception occurred";  }}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
 int main(int argc,char **args)
{return 0;}
 
Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/confc.o: in function `asub()':
/tmp/petsc-7m47ck2r/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.cc:7: undefined reference to `std::cout'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/confc.o: in function `__static_initialization_and_destruction_0(int, int)':
/usr/include/c++/9/iostream:74: undefined reference to `std::ios_base::Init::Init()'
/usr/bin/ld: /usr/include/c++/9/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/confc.o: in function `__gnu_cxx::new_allocator<int>::deallocate(int*, unsigned long)':
/usr/include/c++/9/ext/new_allocator.h:128: undefined reference to `operator delete(void*)'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/confc.o:(.data.rel.local.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/confc.o:(.data.rel.local.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/confc.o: in function `asub()':
/tmp/petsc-7m47ck2r/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.cc:7: undefined reference to `std::cout'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/confc.o: in function `__static_initialization_and_destruction_0(int, int)':
/usr/include/c++/9/iostream:74: undefined reference to `std::ios_base::Init::Init()'
/usr/bin/ld: /usr/include/c++/9/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/confc.o: in function `__gnu_cxx::new_allocator<int>::deallocate(int*, unsigned long)':
/usr/include/c++/9/ext/new_allocator.h:128: undefined reference to `operator delete(void*)'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/confc.o:(.data.rel.local.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/confc.o:(.data.rel.local.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0'
collect2: error: ld returned 1 exit status
Executing: mpicc --version
stdout:
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.compilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <iostream>
#include <vector>
void asub(void)
{std::vector<int> v;
try  { throw 20;  }  catch (int e)  { std::cout << "An exception occurred";  }}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
 int main(int argc,char **args)
{return 0;}
 
Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o -lstdc++ -ldl 
          compilers: C++ requires -lstdc++ to link with C compiler
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.compilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <iostream>
#include <vector>
void asub(void)
{std::vector<int> v;
try  { throw 20;  }  catch (int e)  { std::cout << "An exception occurred";  }}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o -lstdc++ -ldl 
          Additional C++ libraries are not needed when using FC linker
Executing: mpicxx -V
stdout:
g++: error: unrecognized command line option ‘-V’
g++: fatal error: no input files
compilation terminated.
=============================================================================================
TESTING: checkFortranNameMangling from config.compilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilers.py:781)
  Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS
Testing Fortran mangling type underscore with code void d1chk_(void){return;}
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
void d1chk_(void){return;}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
       call d1chk()

      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -ldl 
          compilers: Fortran name mangling is underscore
            Defined "HAVE_FORTRAN_UNDERSCORE" to "1"
Executing: mpif90 --version
stdout:
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Detected GFortran8plus compiler
            Defined "FORTRAN_CHARLEN_T" to "size_t"
=============================================================================================
TESTING: checkFortranNameManglingDouble from config.compilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilers.py:819)
  Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
void d1_chk__(void){return;}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
       call d1_chk()

      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.o: in function `MAIN__':
/tmp/petsc-7m47ck2r/config.compilers/conftest.F90:2: undefined reference to `d1_chk_'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.o: in function `MAIN__':
/tmp/petsc-7m47ck2r/config.compilers/conftest.F90:2: undefined reference to `d1_chk_'
collect2: error: ld returned 1 exit status
=============================================================================================
TESTING: checkFortranLibraries from config.compilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilers.py:829)
  Substitutes for FLIBS the libraries needed to link using the C or C++ compiler Fortran source code compiled with Fortran. Result is stored in flibs.

    This macro is intended to be used in those situations when it is
    necessary to mix, e.g. C++ and Fortran 77, source code into a single
    program or shared library.

    For example, if object files from a C++ and Fortran 77 compiler must
    be linked together, then the C++ compiler/linker must be used for
    linking (since special C++-ish things need to happen at link time
    like calling global constructors, instantiating templates, enabling
    exception support, etc.).

    However, the Fortran 77 intrinsic and run-time libraries must be
    linked in as well, but the C++ compiler/linker does not know how to
    add these Fortran 77 libraries.

    This code was translated from the autoconf macro which was packaged in
    its current form by Matthew D. Langston <langston@SLAC.Stanford.EDU>.
    However, nearly all of this macro came from the OCTAVE_FLIBS macro in
    octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton
    for writing this extremely useful macro.
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
stdout:
/tmp/petsc-7m47ck2r/config.compilers/conftest.F90:3:26:
    3 |       call MPI_Allreduce()
      |                          1
Error: There is no specific subroutine for the generic ‘mpi_allreduce’ at (1)
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.compilers/conftest.F90:3:26:

    3 |       call MPI_Allreduce()
      |                          1
Error: There is no specific subroutine for the generic ‘mpi_allreduce’ at (1)
Source:
      program main
      use mpi
      call MPI_Allreduce()

      end

              Compile failed inside link

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
#include <mpif.h>
      call MPI_Allreduce()

      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-7m47ck2r/config.compilers/conftest.o -ldl 
Executing: mpif90 -V
stdout:
gfortran: error: unrecognized command line option ‘-V’
gfortran: fatal error: no input files
compilation terminated.
Executing: mpicc --help | head -n 80
stdout:
Usage: gcc [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
                           multiple library search directories.
  -print-multi-os-directory Display the relative path to OS libraries.
  -print-sysroot           Display the target libraries directory.
  -print-sysroot-headers-suffix Display the sysroot suffix used to find headers.
  -Wa,<options>            Pass comma-separated <options> on to the assembler.
  -Wp,<options>            Pass comma-separated <options> on to the preprocessor.
  -Wl,<options>            Pass comma-separated <options> on to the linker.
  -Xassembler <arg>        Pass <arg> on to the assembler.
  -Xpreprocessor <arg>     Pass <arg> on to the preprocessor.
  -Xlinker <arg>           Pass <arg> on to the linker.
  -save-temps              Do not delete intermediate files.
  -save-temps=<arg>        Do not delete intermediate files.
  -no-canonical-prefixes   Do not canonicalize paths when building relative
                           prefixes to other gcc components.
  -pipe                    Use pipes rather than intermediate files.
  -time                    Time the execution of each subprocess.
  -specs=<file>            Override built-in specs with the contents of <file>.
  -std=<standard>          Assume that the input sources are for <standard>.
  --sysroot=<directory>    Use <directory> as the root directory for headers
                           and libraries.
  -B <directory>           Add <directory> to the compiler's search paths.
  -v                       Display the programs invoked by the compiler.
  -###                     Like -v but options quoted and commands not executed.
  -E                       Preprocess only; do not compile, assemble or link.
  -S                       Compile only; do not assemble or link.
  -c                       Compile and assemble, but do not link.
  -o <file>                Place the output into <file>.
  -pie                     Create a dynamically linked position independent
                           executable.
  -shared                  Create a shared library.
  -x <language>            Specify the language of the following input files.
                           Permissible languages include: c c++ assembler none
                           'none' means revert to the default behavior of
                           guessing the language based on the file's extension.
Options starting with -g, -f, -m, -O, -W, or --param are automatically
 passed on to the various sub-processes invoked by gcc.  In order to pass
 other options on to these processes the -W<letter> options must be used.
For bug reporting instructions, please see:
<file:///usr/share/doc/gcc-9/README.Bugs>.
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      subroutine asub()
      print*,'testing'
      call MPI_Allreduce()
      return
      end

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
 extern void asub_(void);
int main(int argc,char **args)
{
  asub_();
  (void)argc, (void)args;
  return 0;
}
 
Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/confc.o: in function `asub_':
/tmp/petsc-7m47ck2r/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.F90:2: undefined reference to `_gfortran_transfer_character_write'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write_done'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.F90:3: undefined reference to `mpi_allreduce_'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/confc.o: in function `asub_':
/tmp/petsc-7m47ck2r/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.F90:2: undefined reference to `_gfortran_transfer_character_write'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write_done'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/conftest.F90:3: undefined reference to `mpi_allreduce_'
collect2: error: ld returned 1 exit status
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      subroutine asub()
      print*,'testing'
      call MPI_Allreduce()
      return
      end

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
 extern void asub_(void);
int main(int argc,char **args)
{
  asub_();
  (void)argc, (void)args;
  return 0;
}
 
Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o -lgfortran -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/confc.o: in function `asub_':
/tmp/petsc-7m47ck2r/config.compilers/conftest.F90:3: undefined reference to `mpi_allreduce_'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.compilers/confc.o: in function `asub_':
/tmp/petsc-7m47ck2r/config.compilers/conftest.F90:3: undefined reference to `mpi_allreduce_'
collect2: error: ld returned 1 exit status
          Fortran code cannot directly be linked with C linker, therefore will determine needed Fortran libraries
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main

      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest  -v   -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-7m47ck2r/config.compilers/conftest.o -ldl 
stdout:
Driving: /usr/bin/gfortran -o /tmp/petsc-7m47ck2r/config.compilers/conftest -v -fPIC -ffree-line-length-none -ffree-line-length-0 -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-7m47ck2r/config.compilers/conftest.o -ldl -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -l gfortran -l m -shared-libgcc
Using built-in specs.
COLLECT_GCC=/usr/bin/gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.4.0-1ubuntu1~20.04.2' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-9QDOt0/gcc-9-9.4.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.4.0 (Ubuntu 9.4.0-1ubuntu1~20.04.2) 
Reading specs from /usr/lib/gcc/x86_64-linux-gnu/9/libgfortran.spec
rename spec lib to liborig
COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-7m47ck2r/config.compilers/conftest' '-v' '-fPIC' '-ffree-line-length-none' '-ffree-line-length-0' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/include' '-pthread' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/lib' '-L/usr/lib/x86_64-linux-gnu/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/
LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-7m47ck2r/config.compilers/conftest' '-v' '-fPIC' '-ffree-line-length-none' '-ffree-line-length-0' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/include' '-pthread' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/lib' '-L/usr/lib/x86_64-linux-gnu/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
 /usr/lib/gcc/x86_64-linux-gnu/9/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/9/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper -plugin-opt=-fresolution=/tmp/ccly8eSI.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lpthread -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -z now -z relro -o /tmp/petsc-7m47ck2r/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/9/crtbeginS.o -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/9/../../.. /tmp/petsc-7m47ck2r/config.compilers/conftest.o -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lpthread -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/9/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crtn.o
COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-7m47ck2r/config.compilers/conftest' '-v' '-fPIC' '-ffree-line-length-none' '-ffree-line-length-0' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/include' '-pthread' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/lib' '-L/usr/lib/x86_64-linux-gnu/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
Possible ERROR while running linker:exit code 0
stderr:
Driving: /usr/bin/gfortran -o /tmp/petsc-7m47ck2r/config.compilers/conftest -v -fPIC -ffree-line-length-none -ffree-line-length-0 -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-7m47ck2r/config.compilers/conftest.o -ldl -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -l gfortran -l m -shared-libgcc
Using built-in specs.
COLLECT_GCC=/usr/bin/gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.4.0-1ubuntu1~20.04.2' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-9QDOt0/gcc-9-9.4.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.4.0 (Ubuntu 9.4.0-1ubuntu1~20.04.2) 
Reading specs from /usr/lib/gcc/x86_64-linux-gnu/9/libgfortran.spec
rename spec lib to liborig
COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-7m47ck2r/config.compilers/conftest' '-v' '-fPIC' '-ffree-line-length-none' '-ffree-line-length-0' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/include' '-pthread' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/lib' '-L/usr/lib/x86_64-linux-gnu/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/
LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-7m47ck2r/config.compilers/conftest' '-v' '-fPIC' '-ffree-line-length-none' '-ffree-line-length-0' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/include' '-pthread' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/lib' '-L/usr/lib/x86_64-linux-gnu/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
 /usr/lib/gcc/x86_64-linux-gnu/9/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/9/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper -plugin-opt=-fresolution=/tmp/ccly8eSI.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lpthread -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -z now -z relro -o /tmp/petsc-7m47ck2r/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/9/crtbeginS.o -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/9/../../.. /tmp/petsc-7m47ck2r/config.compilers/conftest.o -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lpthread -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/9/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crtn.o
COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-7m47ck2r/config.compilers/conftest' '-v' '-fPIC' '-ffree-line-length-none' '-ffree-line-length-0' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/include' '-pthread' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/lib' '-L/usr/lib/x86_64-linux-gnu/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
Linker output before filtering:
Driving: /usr/bin/gfortran -o /tmp/petsc-7m47ck2r/config.compilers/conftest -v -fPIC -ffree-line-length-none -ffree-line-length-0 -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-7m47ck2r/config.compilers/conftest.o -ldl -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -l gfortran -l m -shared-libgcc
Using built-in specs.
COLLECT_GCC=/usr/bin/gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.4.0-1ubuntu1~20.04.2' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-9QDOt0/gcc-9-9.4.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.4.0 (Ubuntu 9.4.0-1ubuntu1~20.04.2) 
Reading specs from /usr/lib/gcc/x86_64-linux-gnu/9/libgfortran.spec
rename spec lib to liborig
COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-7m47ck2r/config.compilers/conftest' '-v' '-fPIC' '-ffree-line-length-none' '-ffree-line-length-0' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/include' '-pthread' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/lib' '-L/usr/lib/x86_64-linux-gnu/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/
LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-7m47ck2r/config.compilers/conftest' '-v' '-fPIC' '-ffree-line-length-none' '-ffree-line-length-0' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/include' '-pthread' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/lib' '-L/usr/lib/x86_64-linux-gnu/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
 /usr/lib/gcc/x86_64-linux-gnu/9/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/9/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper -plugin-opt=-fresolution=/tmp/ccly8eSI.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lpthread -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -z now -z relro -o /tmp/petsc-7m47ck2r/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/9/crtbeginS.o -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/9/../../.. /tmp/petsc-7m47ck2r/config.compilers/conftest.o -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lpthread -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/9/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crtn.o
COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-7m47ck2r/config.compilers/conftest' '-v' '-fPIC' '-ffree-line-length-none' '-ffree-line-length-0' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/include' '-pthread' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/lib' '-L/usr/lib/x86_64-linux-gnu/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
Linker output after filtering:
Driving: /usr/bin/gfortran -o /tmp/petsc-7m47ck2r/config.compilers/conftest -v -fPIC -ffree-line-length-none -ffree-line-length-0 -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-7m47ck2r/config.compilers/conftest.o -ldl -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -l gfortran -l m -shared-libgcc
Using built-in specs.
COLLECT_GCC=/usr/bin/gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.4.0-1ubuntu1~20.04.2' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-9QDOt0/gcc-9-9.4.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.4.0 (Ubuntu 9.4.0-1ubuntu1~20.04.2) 
Reading specs from /usr/lib/gcc/x86_64-linux-gnu/9/libgfortran.spec
rename spec lib to liborig
COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-7m47ck2r/config.compilers/conftest' '-v' '-fPIC' '-ffree-line-length-none' '-ffree-line-length-0' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/include' '-pthread' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/lib' '-L/usr/lib/x86_64-linux-gnu/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/
LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-7m47ck2r/config.compilers/conftest' '-v' '-fPIC' '-ffree-line-length-none' '-ffree-line-length-0' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/include' '-pthread' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/lib' '-L/usr/lib/x86_64-linux-gnu/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
 /usr/lib/gcc/x86_64-linux-gnu/9/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/9/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper -plugin-opt=-fresolution=/tmp/ccly8eSI.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lpthread -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -z now -z relro -o /tmp/petsc-7m47ck2r/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/9/crtbeginS.o -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/9/../../.. /tmp/petsc-7m47ck2r/config.compilers/conftest.o -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lpthread -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/9/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crtn.o
COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-7m47ck2r/config.compilers/conftest' '-v' '-fPIC' '-ffree-line-length-none' '-ffree-line-length-0' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/include' '-pthread' '-I' '/usr/lib/x86_64-linux-gnu/openmpi/lib' '-L/usr/lib/x86_64-linux-gnu/openmpi/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
          compilers: Checking arg Driving:
          compilers: Unknown arg Driving:
          compilers: Checking arg /usr/bin/gfortran
          compilers: Unknown arg /usr/bin/gfortran
          compilers: Checking arg -o
          compilers: Unknown arg -o
          compilers: Checking arg /tmp/petsc-7m47ck2r/config.compilers/conftest
          compilers: Unknown arg /tmp/petsc-7m47ck2r/config.compilers/conftest
          compilers: Checking arg -v
          compilers: Unknown arg -v
          compilers: Checking arg -fPIC
          compilers: Unknown arg -fPIC
          compilers: Checking arg -ffree-line-length-none
          compilers: Unknown arg -ffree-line-length-none
          compilers: Checking arg -ffree-line-length-0
          compilers: Unknown arg -ffree-line-length-0
          compilers: Checking arg -Wall
          compilers: Unknown arg -Wall
          compilers: Checking arg -ffree-line-length-none
          compilers: Unknown arg -ffree-line-length-none
          compilers: Checking arg -ffree-line-length-0
          compilers: Unknown arg -ffree-line-length-0
          compilers: Checking arg -Wno-lto-type-mismatch
          compilers: Unknown arg -Wno-lto-type-mismatch
          compilers: Checking arg -Wno-unused-dummy-argument
          compilers: Unknown arg -Wno-unused-dummy-argument
          compilers: Checking arg -g
          compilers: Unknown arg -g
          compilers: Checking arg -O0
          compilers: Unknown arg -O0
          compilers: Checking arg /tmp/petsc-7m47ck2r/config.compilers/conftest.o
          compilers: Unknown arg /tmp/petsc-7m47ck2r/config.compilers/conftest.o
          compilers: Checking arg -ldl
          compilers: Found library: -ldl
          compilers: Checking arg -I/usr/lib/x86_64-linux-gnu/openmpi/include
          compilers: Found include directory: /usr/lib/x86_64-linux-gnu/openmpi/include
          compilers: Checking arg -pthread
          compilers: Unknown arg -pthread
          compilers: Checking arg -I/usr/lib/x86_64-linux-gnu/openmpi/lib
          compilers: Found include directory: /usr/lib/x86_64-linux-gnu/openmpi/lib
          compilers: Checking arg -L/usr/lib/x86_64-linux-gnu/openmpi/lib
          compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu/openmpi/lib
          compilers: Checking arg -lmpi_usempif08
          compilers: Found library: -lmpi_usempif08
          compilers: Checking arg -lmpi_usempi_ignore_tkr
          compilers: Found library: -lmpi_usempi_ignore_tkr
          compilers: Checking arg -lmpi_mpifh
          compilers: Found library: -lmpi_mpifh
          compilers: Checking arg -lmpi
          compilers: Found library: -lmpi
          compilers: Checking arg -l
          compilers: Found canonical library: -lgfortran
          compilers: Checking arg -l
          compilers: Found canonical library: -lm
          compilers: Checking arg -shared-libgcc
          compilers: Unknown arg -shared-libgcc
          compilers: Checking arg Using
          compilers: Unknown arg Using
          compilers: Checking arg built-in
          compilers: Unknown arg built-in
          compilers: Checking arg specs.
          compilers: Unknown arg specs.
          compilers: Checking arg COLLECT_GCC=/usr/bin/gfortran
          compilers: Unknown arg COLLECT_GCC=/usr/bin/gfortran
          compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
          compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
          compilers: Checking arg OFFLOAD_TARGET_NAMES=nvptx-none:hsa
          compilers: Unknown arg OFFLOAD_TARGET_NAMES=nvptx-none:hsa
          compilers: Checking arg OFFLOAD_TARGET_DEFAULT=1
          compilers: Unknown arg OFFLOAD_TARGET_DEFAULT=1
          compilers: Checking arg Target:
          compilers: Unknown arg Target:
          compilers: Checking arg x86_64-linux-gnu
          compilers: Unknown arg x86_64-linux-gnu
          compilers: Checking arg Configured
          compilers: Unknown arg Configured
          compilers: Checking arg with:
          compilers: Unknown arg with:
          compilers: Checking arg ../src/configure
          compilers: Unknown arg ../src/configure
          compilers: Checking arg -v
          compilers: Unknown arg -v
          compilers: Checking arg --with-pkgversion=
          compilers: Unknown arg --with-pkgversion=
          compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs
          compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs
          compilers: Checking arg --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2
          compilers: Unknown arg --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2
          compilers: Checking arg --prefix=/usr
          compilers: Unknown arg --prefix=/usr
          compilers: Checking arg --with-gcc-major-version-only
          compilers: Unknown arg --with-gcc-major-version-only
          compilers: Checking arg --program-suffix=-9
          compilers: Unknown arg --program-suffix=-9
          compilers: Checking arg --program-prefix=x86_64-linux-gnu-
          compilers: Unknown arg --program-prefix=x86_64-linux-gnu-
          compilers: Checking arg --enable-shared
          compilers: Unknown arg --enable-shared
          compilers: Checking arg --enable-linker-build-id
          compilers: Unknown arg --enable-linker-build-id
          compilers: Checking arg --libexecdir=/usr/lib
          compilers: Unknown arg --libexecdir=/usr/lib
          compilers: Checking arg --without-included-gettext
          compilers: Unknown arg --without-included-gettext
          compilers: Checking arg --enable-threads=posix
          compilers: Unknown arg --enable-threads=posix
          compilers: Checking arg --libdir=/usr/lib
          compilers: Unknown arg --libdir=/usr/lib
          compilers: Checking arg --enable-nls
          compilers: Unknown arg --enable-nls
          compilers: Checking arg --enable-clocale=gnu
          compilers: Unknown arg --enable-clocale=gnu
          compilers: Checking arg --enable-libstdcxx-debug
          compilers: Unknown arg --enable-libstdcxx-debug
          compilers: Checking arg --enable-libstdcxx-time=yes
          compilers: Unknown arg --enable-libstdcxx-time=yes
          compilers: Checking arg --with-default-libstdcxx-abi=new
          compilers: Unknown arg --with-default-libstdcxx-abi=new
          compilers: Checking arg --enable-gnu-unique-object
          compilers: Unknown arg --enable-gnu-unique-object
          compilers: Checking arg --disable-vtable-verify
          compilers: Unknown arg --disable-vtable-verify
          compilers: Checking arg --enable-plugin
          compilers: Unknown arg --enable-plugin
          compilers: Checking arg --enable-default-pie
          compilers: Unknown arg --enable-default-pie
          compilers: Checking arg --with-system-zlib
          compilers: Unknown arg --with-system-zlib
          compilers: Checking arg --with-target-system-zlib=auto
          compilers: Unknown arg --with-target-system-zlib=auto
          compilers: Checking arg --enable-objc-gc=auto
          compilers: Unknown arg --enable-objc-gc=auto
          compilers: Checking arg --enable-multiarch
          compilers: Unknown arg --enable-multiarch
          compilers: Checking arg --disable-werror
          compilers: Unknown arg --disable-werror
          compilers: Checking arg --with-arch-32=i686
          compilers: Unknown arg --with-arch-32=i686
          compilers: Checking arg --with-abi=m64
          compilers: Unknown arg --with-abi=m64
          compilers: Checking arg --with-multilib-list=m32,m64,mx32
          compilers: Unknown arg --with-multilib-list=m32,m64,mx32
          compilers: Checking arg --enable-multilib
          compilers: Unknown arg --enable-multilib
          compilers: Checking arg --with-tune=generic
          compilers: Unknown arg --with-tune=generic
          compilers: Checking arg --enable-offload-targets=nvptx-none=/build/gcc-9-9QDOt0/gcc-9-9.4.0/debian/tmp-nvptx/usr,hsa
          compilers: Unknown arg --enable-offload-targets=nvptx-none=/build/gcc-9-9QDOt0/gcc-9-9.4.0/debian/tmp-nvptx/usr,hsa
          compilers: Checking arg --without-cuda-driver
          compilers: Unknown arg --without-cuda-driver
          compilers: Checking arg --enable-checking=release
          compilers: Unknown arg --enable-checking=release
          compilers: Checking arg --build=x86_64-linux-gnu
          compilers: Unknown arg --build=x86_64-linux-gnu
          compilers: Checking arg --host=x86_64-linux-gnu
          compilers: Unknown arg --host=x86_64-linux-gnu
          compilers: Checking arg --target=x86_64-linux-gnu
          compilers: Unknown arg --target=x86_64-linux-gnu
          compilers: Checking arg Thread
          compilers: Unknown arg Thread
          compilers: Checking arg model:
          compilers: Unknown arg model:
          compilers: Checking arg posix
          compilers: Unknown arg posix
          compilers: Checking arg gcc
          compilers: Unknown arg gcc
          compilers: Checking arg version
          compilers: Unknown arg version
          compilers: Checking arg 9.4.0
          compilers: Unknown arg 9.4.0
          compilers: Checking arg (Ubuntu
          compilers: Unknown arg (Ubuntu
          compilers: Checking arg 9.4.0-1ubuntu1~20.04.2)
          compilers: Unknown arg 9.4.0-1ubuntu1~20.04.2)
          compilers: Checking arg Reading
          compilers: Unknown arg Reading
          compilers: Checking arg specs
          compilers: Unknown arg specs
          compilers: Checking arg from
          compilers: Unknown arg from
          compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/9/libgfortran.spec
          compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/9/libgfortran.spec
          compilers: Checking arg rename
          compilers: Unknown arg rename
          compilers: Checking arg spec
          compilers: Unknown arg spec
          compilers: Checking arg lib
          compilers: Unknown arg lib
          compilers: Checking arg to
          compilers: Unknown arg to
          compilers: Checking arg liborig
          compilers: Unknown arg liborig
          compilers: Checking arg COLLECT_GCC_OPTIONS=
          compilers: Unknown arg COLLECT_GCC_OPTIONS=
          compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/
          compilers: Skipping arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/
          compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../:/lib/:/usr/lib/
          compilers: Skipping arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../:/lib/:/usr/lib/
          compilers: Checking arg COLLECT_GCC_OPTIONS=
          compilers: Unknown arg COLLECT_GCC_OPTIONS=
          compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/9/collect2
          compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/9/collect2
          compilers: Checking arg -plugin
          compilers: Unknown arg -plugin
          compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/9/liblto_plugin.so
          compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/9/liblto_plugin.so
          compilers: Checking arg -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
          compilers: Unknown arg -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
          compilers: Checking arg -plugin-opt=-fresolution=/tmp/ccly8eSI.res
          compilers: Unknown arg -plugin-opt=-fresolution=/tmp/ccly8eSI.res
          compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s
          compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s
          compilers: Checking arg -plugin-opt=-pass-through=-lgcc
          compilers: Unknown arg -plugin-opt=-pass-through=-lgcc
          compilers: Checking arg -plugin-opt=-pass-through=-lquadmath
          compilers: Unknown arg -plugin-opt=-pass-through=-lquadmath
          compilers: Checking arg -plugin-opt=-pass-through=-lm
          compilers: Unknown arg -plugin-opt=-pass-through=-lm
          compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s
          compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s
          compilers: Checking arg -plugin-opt=-pass-through=-lgcc
          compilers: Unknown arg -plugin-opt=-pass-through=-lgcc
          compilers: Checking arg -plugin-opt=-pass-through=-lpthread
          compilers: Unknown arg -plugin-opt=-pass-through=-lpthread
          compilers: Checking arg -plugin-opt=-pass-through=-lc
          compilers: Unknown arg -plugin-opt=-pass-through=-lc
          compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s
          compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s
          compilers: Checking arg -plugin-opt=-pass-through=-lgcc
          compilers: Unknown arg -plugin-opt=-pass-through=-lgcc
          compilers: Checking arg --build-id
          compilers: Unknown arg --build-id
          compilers: Checking arg --eh-frame-hdr
          compilers: Unknown arg --eh-frame-hdr
          compilers: Checking arg -m
          compilers: Unknown arg -m
          compilers: Checking arg elf_x86_64
          compilers: Unknown arg elf_x86_64
          compilers: Checking arg --hash-style=gnu
          compilers: Unknown arg --hash-style=gnu
          compilers: Checking arg --as-needed
          compilers: Unknown arg --as-needed
          compilers: Checking arg -dynamic-linker
          compilers: Unknown arg -dynamic-linker
          compilers: Checking arg /lib64/ld-linux-x86-64.so.2
          compilers: Unknown arg /lib64/ld-linux-x86-64.so.2
          compilers: Checking arg -pie
          compilers: Unknown arg -pie
          compilers: Checking arg -z
          compilers: Unknown arg -z
          compilers: Checking arg now
          compilers: Unknown arg now
          compilers: Checking arg -z
          compilers: Unknown arg -z
          compilers: Checking arg relro
          compilers: Unknown arg relro
          compilers: Checking arg -o
          compilers: Unknown arg -o
          compilers: Checking arg /tmp/petsc-7m47ck2r/config.compilers/conftest
          compilers: Unknown arg /tmp/petsc-7m47ck2r/config.compilers/conftest
          compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/Scrt1.o
          compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/Scrt1.o
          compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crti.o
          compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crti.o
          compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/9/crtbeginS.o
          compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/9/crtbeginS.o
          compilers: Checking arg -L/usr/lib/x86_64-linux-gnu/openmpi/lib
          compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu/openmpi/lib
          compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/9
          compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/9
          compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu
          compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib
          compilers: Checking arg -L/lib/x86_64-linux-gnu
          compilers: Checking arg -L/lib/../lib
          compilers: Checking arg -L/usr/lib/x86_64-linux-gnu
          compilers: Checking arg -L/usr/lib/../lib
          compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/9/../../..
          compilers: Checking arg /tmp/petsc-7m47ck2r/config.compilers/conftest.o
          compilers: Unknown arg /tmp/petsc-7m47ck2r/config.compilers/conftest.o
          compilers: Checking arg -ldl
          compilers: Already in lflags: -ldl
          compilers: Checking arg -lmpi_usempif08
          compilers: Already in lflags: -lmpi_usempif08
          compilers: Checking arg -lmpi_usempi_ignore_tkr
          compilers: Already in lflags: -lmpi_usempi_ignore_tkr
          compilers: Checking arg -lmpi_mpifh
          compilers: Already in lflags: -lmpi_mpifh
          compilers: Checking arg -lmpi
          compilers: Already in lflags: -lmpi
          compilers: Checking arg -lgfortran
          compilers: Found library: -lgfortran
          compilers: Checking arg -lm
          compilers: Found library: -lm
          compilers: Checking arg -lgcc_s
          compilers: Found library: -lgcc_s
          compilers: Checking arg -lgcc
          compilers: Found system library therefore skipping: -lgcc
          compilers: Checking arg -lquadmath
          compilers: Found library: -lquadmath
          compilers: Checking arg -lm
          compilers: Already in lflags: -lm
          compilers: Checking arg -lgcc_s
          compilers: Already in lflags: -lgcc_s
          compilers: Checking arg -lgcc
          compilers: Found system library therefore skipping: -lgcc
          compilers: Checking arg -lpthread
          compilers: Found library: -lpthread
          compilers: Checking arg -lc
          compilers: Found system library therefore skipping: -lc
          compilers: Checking arg -lgcc_s
          compilers: Already in lflags: -lgcc_s
          compilers: Checking arg -lgcc
          compilers: Found system library therefore skipping: -lgcc
          compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/9/crtendS.o
          compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/9/crtendS.o
          compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crtn.o
          compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crtn.o
          compilers: Checking arg COLLECT_GCC_OPTIONS=
          compilers: Unknown arg COLLECT_GCC_OPTIONS=
          compilers: Libraries needed to link Fortran code with the C linker: ['-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread']
          compilers: Libraries needed to link Fortran main with the C linker: []
          compilers: Check that Fortran libraries can be used with Fortran as the linker
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -ldl 
======== Checking running linked program
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -ldl 
Testing executable /tmp/petsc-7m47ck2r/config.setCompilers/conftest to see if it can be run
Executing: /tmp/petsc-7m47ck2r/config.setCompilers/conftest
Running Executable with threads to time it out at 60
Executing: /tmp/petsc-7m47ck2r/config.setCompilers/conftest
          compilers: Check that Fortran libraries can be used with C as the linker
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -ldl 
======== Checking running linked program
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -ldl 
Testing executable /tmp/petsc-7m47ck2r/config.setCompilers/conftest to see if it can be run
Executing: /tmp/petsc-7m47ck2r/config.setCompilers/conftest
Running Executable with threads to time it out at 60
Executing: /tmp/petsc-7m47ck2r/config.setCompilers/conftest
          compilers: Check that Fortran libraries can be used with C++ as linker
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicxx  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest    -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -ldl 
======== Checking running linked program
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
  return 0;
}

Executing: mpicxx  -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest    -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -ldl 
Testing executable /tmp/petsc-7m47ck2r/config.setCompilers/conftest to see if it can be run
Executing: /tmp/petsc-7m47ck2r/config.setCompilers/conftest
Running Executable with threads to time it out at 60
Executing: /tmp/petsc-7m47ck2r/config.setCompilers/conftest
          compilers: Fortran libraries can be used from C++
=============================================================================================
TESTING: checkFortranLinkingCxx from config.compilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilers.py:1314)
  Check that Fortran can link C++ libraries
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.compilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
extern "C" void d1chk_(void);
void foo(void){d1chk_();}

Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.compilers/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
extern "C" void d1chk_(void);
void d1chk_(void){return;}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
       call d1chk()

      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/cxxobj.o  /tmp/petsc-7m47ck2r/config.compilers/confc.o  -ldl 
          compilers: Fortran can link C++ functions
=============================================================================================
TESTING: setupFrameworkCompilers from config.compilers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilers.py:1505)
  Sets the selected compilers into the framework
    child config.compilers took 4.737483 seconds
=============================================================================================
TESTING: checkFortranTypeSizes from config.compilersFortran(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilersFortran.py:56)
  Check whether real*8 is supported and suggest flags which will allow support
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90 
stdout:
/tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90:2:21:
    2 |       real*8 variable
      |                     1
Warning: Unused variable ‘variable’ declared at (1) [-Wunused-variable]
Possible ERROR while running compiler:exit code 0
stderr:
/tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90:2:21:

    2 |       real*8 variable
      |                     1
Warning: Unused variable ‘variable’ declared at (1) [-Wunused-variable]
Source:
      program main
      real*8 variable
      end

=============================================================================================
TESTING: checkFortranPreprocessor from config.compilersFortran(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilersFortran.py:73)
  Determine if Fortran handles preprocessing properly
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0    /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main
#define dummy 
           dummy
#ifndef dummy
       fooey
#endif
      end

              Output from compiling with  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  

          compilers: Fortran uses  preprocessor
=============================================================================================
TESTING: checkFortranDefineCompilerOption from config.compilersFortran(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilersFortran.py:96)
  Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.setCompilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  -DTesting  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main
#define dummy 
           dummy
#ifndef Testing
       fooey
#endif
      end

            Output from compiling with  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  -DTesting

            Defined make macro "FC_DEFINE_FLAG" to "-D"
          compilers: Fortran uses -D for defining macro
=============================================================================================
TESTING: checkFortran90 from config.compilersFortran(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilersFortran.py:150)
  Determine whether the Fortran compiler handles F90
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90 
stdout:
/tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90:3:43:
    3 |         REAL(KIND=SELECTED_REAL_KIND(10)) d
      |                                           1
Warning: Unused variable ‘d’ declared at (1) [-Wunused-variable]
Possible ERROR while running compiler:exit code 0
stderr:
/tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90:3:43:

    3 |         REAL(KIND=SELECTED_REAL_KIND(10)) d
      |                                           1
Warning: Unused variable ‘d’ declared at (1) [-Wunused-variable]
Source:
      program main

        REAL(KIND=SELECTED_REAL_KIND(10)) d
        INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8)
        INTEGER (KIND=int) :: ierr
        ierr = 1
      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -ldl 
          Fortran compiler supports F90
=============================================================================================
TESTING: checkFortran90FreeForm from config.compilersFortran(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilersFortran.py:177)
  Determine whether the Fortran compiler handles F90FreeForm
       We also require that the compiler handles lines longer than 132 characters
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90 
Successful compile:
Source:
      program main
      INTEGER, PARAMETER ::        int = SELECTED_INT_KIND(8);              INTEGER (KIND=int) :: ierr;       ierr                            =                                                                                                               1
      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -ldl 
            Defined "USING_F90FREEFORM" to "1"
          Fortran compiler supports F90FreeForm
=============================================================================================
TESTING: checkFortran2003 from config.compilersFortran(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilersFortran.py:191)
  Determine whether the Fortran compiler handles F2003
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90 
stdout:
/tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90:21:0:
   21 |       CArray(1:Len) = c_loc(list1)
      | 
Warning: ‘carray.data’ may be used uninitialized in this function [-Wmaybe-uninitialized]
/tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90:21:0: Warning: ‘carray.offset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
/tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90:21:0: Warning: ‘len’ may be used uninitialized in this function [-Wmaybe-uninitialized]
/tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90:21:0:
   21 |       CArray(1:Len) = c_loc(list1)
      | 
Warning: ‘carray.dim[0].stride’ may be used uninitialized in this function [-Wmaybe-uninitialized]
/tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90:22:0:
   22 |       CArray(Len+1) = c_loc(nullc)
      | 
Warning: ‘carray.data’ may be used uninitialized in this function [-Wmaybe-uninitialized]
/tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90:22:0: Warning: ‘carray.offset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
/tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90:22:0: Warning: ‘carray.dim[0].stride’ may be used uninitialized in this function [-Wmaybe-uninitialized]
Possible ERROR while running compiler:exit code 0
stderr:
/tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90:21:0:

   21 |       CArray(1:Len) = c_loc(list1)
      | 
Warning: ‘carray.data’ may be used uninitialized in this function [-Wmaybe-uninitialized]
/tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90:21:0: Warning: ‘carray.offset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
/tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90:21:0: Warning: ‘len’ may be used uninitialized in this function [-Wmaybe-uninitialized]
/tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90:21:0:

   21 |       CArray(1:Len) = c_loc(list1)
      | 
Warning: ‘carray.dim[0].stride’ may be used uninitialized in this function [-Wmaybe-uninitialized]
/tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90:22:0:

   22 |       CArray(Len+1) = c_loc(nullc)
      | 
Warning: ‘carray.data’ may be used uninitialized in this function [-Wmaybe-uninitialized]
/tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90:22:0: Warning: ‘carray.offset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
/tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90:22:0: Warning: ‘carray.dim[0].stride’ may be used uninitialized in this function [-Wmaybe-uninitialized]
Source:

      module Base_module
        type, public :: base_type
           integer :: A
         contains
           procedure, public :: Print => BasePrint
        end type base_type
      contains
        subroutine BasePrint(this)
          class(base_type) :: this
        end subroutine BasePrint
      end module Base_module

      program main
      use,intrinsic :: iso_c_binding
      Type(C_Ptr),Dimension(:),Pointer :: CArray
      character(kind=c_char),pointer   :: nullc => null()
      character(kind=c_char,len=5),dimension(:),pointer::list1

      allocate(list1(5))
      CArray(1:Len) = c_loc(list1)
      CArray(Len+1) = c_loc(nullc)
      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -ldl 
            Defined "USING_F2003" to "1"
          Fortran compiler supports F2003
=============================================================================================
TESTING: checkFortran90Array from config.compilersFortran(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilersFortran.py:227)
  Check for F90 array interfaces
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include<stdio.h>
#include <stdlib.h>
void f90arraytest_(void* a1, void* a2,void* a3, void* i)
{
  printf("arrays [%p %p %p]\n",a1,a2,a3);
  fflush(stdout);
  return;
}
void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3)
{
  printf("arrays [%p %p %p]\n",a1,a2,a3);
  if ((p1 == p3) && (p1 != p2)) {
    printf("pointers match! [%p %p] [%p]\n",p1,p3,p2);
    fflush(stdout);
  } else {
    printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2);
    fflush(stdout);
    exit(111);
  }
  return;
}

======== Checking running linked program
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90 
Successful compile:
Source:
      program main
      Interface
         Subroutine f90ptrtest(p1,p2,p3,i)
         integer, pointer :: p1(:,:)
         integer, pointer :: p2(:,:)
         integer, pointer :: p3(:,:)
         integer i
         End Subroutine
      End Interface

      integer, pointer :: ptr1(:,:),ptr2(:,:)
      integer, target  :: array(6:8,9:21)
      integer  in

      in   = 25
      ptr1 => array
      ptr2 => array

      call f90arraytest(ptr1,ptr2,ptr1,in)
      call f90ptrtest(ptr1,ptr2,ptr1,in)

      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o /tmp/petsc-7m47ck2r/config.compilersFortran/fooobj.o -ldl 
Testing executable /tmp/petsc-7m47ck2r/config.compilersFortran/conftest to see if it can be run
Executing: /tmp/petsc-7m47ck2r/config.compilersFortran/conftest
Running Executable with threads to time it out at 60
Executing: /tmp/petsc-7m47ck2r/config.compilersFortran/conftest
stdout:
arrays [0x7fffaa30afa0 0x7fffaa30afa0 0x7fffaa30afa0]
arrays [0x7fffaa30af40 0x7fffaa30aee0 0x7fffaa30af40]
pointers do not match! [(nil) 0x7fffaa30afa0] [0x36]
ERROR while running executable: Could not execute "['/tmp/petsc-7m47ck2r/config.compilersFortran/conftest']":
arrays [0x7fffaa30afa0 0x7fffaa30afa0 0x7fffaa30afa0]
arrays [0x7fffaa30af40 0x7fffaa30aee0 0x7fffaa30af40]
pointers do not match! [(nil) 0x7fffaa30afa0] [0x36]
          compilers: F90 uses a single argument for array pointers
=============================================================================================
TESTING: checkFortran90AssumedType from config.compilersFortran(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilersFortran.py:314)
  Check if Fortran compiler array pointer is a raw pointer in C
Executing: mpif90 -qversion
stdout:
gfortran: error: unrecognized command line option ‘-qversion’; did you mean ‘--version’?
gfortran: fatal error: no input files
compilation terminated.
=============================================================================================
TESTING: checkFortranModuleInclude from config.compilersFortran(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilersFortran.py:320)
  Figures out what flag is used to specify the include path for Fortran modules
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90 
Successful compile:
Source:
      module configtest
      integer testint
      parameter (testint = 42)
      end module configtest

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.compilersFortran/confdir  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90 
Successful compile:
Source:
      program main
      use configtest

      write(*,*) testint

      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest   -I/tmp/petsc-7m47ck2r/config.compilersFortran/confdir  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o /tmp/petsc-7m47ck2r/config.compilersFortran/configtest.o -ldl 
          compilers: Fortran module include flag -I found
=============================================================================================
TESTING: checkFortranModuleOutput from config.compilersFortran(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilersFortran.py:386)
  Figures out what flag is used to specify the output path for Fortran modules
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -module /tmp/petsc-7m47ck2r/config.compilersFortran/confdir  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90 
stdout: gfortran: error: unrecognized command line option ‘-module’; did you mean ‘-fmodules’?
Possible ERROR while running compiler: exit code 1
stderr:
gfortran: error: unrecognized command line option ‘-module’; did you mean ‘-fmodules’?
Source:
      module configtest
      integer testint
      parameter (testint = 42)
      end module configtest

          compilers: Fortran module output flag -module  compile failed
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -module:/tmp/petsc-7m47ck2r/config.compilersFortran/confdir  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90 
stdout: gfortran: error: unrecognized command line option ‘-module:/tmp/petsc-7m47ck2r/config.compilersFortran/confdir’
Possible ERROR while running compiler: exit code 1
stderr:
gfortran: error: unrecognized command line option ‘-module:/tmp/petsc-7m47ck2r/config.compilersFortran/confdir’
Source:
      module configtest
      integer testint
      parameter (testint = 42)
      end module configtest

          compilers: Fortran module output flag -module: compile failed
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -fmod=/tmp/petsc-7m47ck2r/config.compilersFortran/confdir  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90 
stdout: f951: Warning: command line option ‘-fmod=/tmp/petsc-7m47ck2r/config.compilersFortran/confdir’ is valid for Modula-2 but not for Fortran
Possible ERROR while running compiler:exit code 0
stderr:
f951: Warning: command line option ‘-fmod=/tmp/petsc-7m47ck2r/config.compilersFortran/confdir’ is valid for Modula-2 but not for Fortran
Source:
      module configtest
      integer testint
      parameter (testint = 42)
      end module configtest

          compilers: Fortran module output flag -fmod= failed
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -J/tmp/petsc-7m47ck2r/config.compilersFortran/confdir  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90 
Successful compile:
Source:
      module configtest
      integer testint
      parameter (testint = 42)
      end module configtest

          compilers: Fortran module output flag -J found
=============================================================================================
TESTING: checkFortranTypeStar from config.compilersFortran(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilersFortran.py:136)
  Determine whether the Fortran compiler handles type(*)
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90 
Successful compile:
Source:
      program main
      interface
      subroutine a(b)
      type(*)  b
      end subroutine
      end interface

      end

            Defined "HAVE_FORTRAN_TYPE_STAR" to "1"
          Fortran compiler supports type(*)
=============================================================================================
TESTING: checkFortranTypeInitialize from config.compilersFortran(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilersFortran.py:126)
  Determines if PETSc objects in Fortran are initialized by default (doesn't work with common blocks)
            Defined "FORTRAN_TYPE_INITIALIZE" to " = -2"
          Initializing Fortran objects
=============================================================================================
TESTING: configureFortranFlush from config.compilersFortran(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilersFortran.py:116)
  Determine if Fortran has a flush() command
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90 
Successful compile:
Source:
      program main
      call flush(6)
      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -ldl 
            Defined "HAVE_FORTRAN_FLUSH" to "1"
=============================================================================================
TESTING: checkDependencyGenerationFlag from config.compilersFortran(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilersFortran.py:431)
  Check if -MMD works for dependency generation, and add it if it does
          Trying FC compiler flag -MMD -MP
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  -MMD -MP  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.F90 
Successful compile:
Source:
      program main

      end

            Output from compiling with  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  -MMD -MP

            Defined make macro "FC_DEPFLAGS" to "-MMD -MP"
=============================================================================================
TESTING: checkFortran90LineLength from config.compilersFortran(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/compilersFortran.py:166)
  Determine whether the Fortran compiler has infinite line length
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.F90 
Successful compile:
Source:
      program main
      INTEGER, PARAMETER ::        int = SELECTED_INT_KIND(8);              INTEGER (KIND=int) :: ierr,ierr2;       ierr                            =                                                                                                               1; ierr2 =                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      2
      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilersFortran/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilersFortran/conftest.o -ldl 
            Defined "HAVE_FORTRAN_FREE_LINE_LENGTH_NONE" to "1"
          Fortran compiler has unlimited line length
    child config.compilersFortran took 1.273075 seconds
=============================================================================================
TESTING: checkStdC from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:121)
  Determine if C standard headers support everything PETSc needs
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.headers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#include <stdlib.h>
#include <stdarg.h>
#include <string.h>
#include <float.h>

int main(void) {
  return 0;
}

Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <string.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <stdlib.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
======== Checking running linked program
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.headers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#include <stdlib.h>
#include <ctype.h>
#define ISLOWER(c) ('a' <= (c) && (c) <= 'z')
#define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c))
#define XOR(e, f) (((e) && !(f)) || (!(e) && (f)))

int main(void) {

        int i;

        for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2);
        exit(0);
      
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.headers/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.headers/conftest.o -ldl 
Testing executable /tmp/petsc-7m47ck2r/config.headers/conftest to see if it can be run
Executing: /tmp/petsc-7m47ck2r/config.headers/conftest
Running Executable with threads to time it out at 60
Executing: /tmp/petsc-7m47ck2r/config.headers/conftest
=============================================================================================
TESTING: checkSysWait from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:155)
  Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.headers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#include <sys/types.h>
#include <sys/wait.h>
#ifndef WEXITSTATUS
#define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8)
#endif
#ifndef WIFEXITED
#define WIFEXITED(stat_val) (((stat_val) & 255) == 0)
#endif

int main(void) {

    int s;
    wait (&s);
    s = WIFEXITED (s) ? WEXITSTATUS (s) : 1;
    
  return 0;
}

            Defined "HAVE_SYS_WAIT_H" to "1"
=============================================================================================
TESTING: checkTime from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:177)
  Checks if you can safely include both <sys/time.h> and <time.h>, and if so defines TIME_WITH_SYS_TIME
Checking for header: time.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <time.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
              Defined "HAVE_TIME_H" to "1"
Checking for header: sys/time.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/time.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
              Defined "HAVE_SYS_TIME_H" to "1"
=============================================================================================
TESTING: checkMath from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:183)
  Checks for the math headers and defines
Checking for header: math.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <math.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.headers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <math.h>

int main(void) {
double pi = M_PI;
(void)pi;
  return 0;
}

          Found math #defines, like M_PI
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: setjmp.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <setjmp.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_SETJMP_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: dos.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <dos.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory
    3 | #include <dos.h>
      |          ^~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <dos.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory
    3 | #include <dos.h>
      |          ^~~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory
    3 | #include <dos.h>
      |          ^~~~~~~
compilation terminated.
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: fcntl.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <fcntl.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_FCNTL_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: float.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <float.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_FLOAT_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: io.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <io.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory
    3 | #include <io.h>
      |          ^~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <io.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory
    3 | #include <io.h>
      |          ^~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory
    3 | #include <io.h>
      |          ^~~~~~
compilation terminated.
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: malloc.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <malloc.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_MALLOC_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: pwd.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <pwd.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_PWD_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: strings.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <strings.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_STRINGS_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: unistd.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <unistd.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_UNISTD_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: machine/endian.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <machine/endian.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory
    3 | #include <machine/endian.h>
      |          ^~~~~~~~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <machine/endian.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory
    3 | #include <machine/endian.h>
      |          ^~~~~~~~~~~~~~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory
    3 | #include <machine/endian.h>
      |          ^~~~~~~~~~~~~~~~~~
compilation terminated.
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/param.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/param.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_SYS_PARAM_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/procfs.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/procfs.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_SYS_PROCFS_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/resource.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/resource.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_SYS_RESOURCE_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/systeminfo.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/systeminfo.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory
    3 | #include <sys/systeminfo.h>
      |          ^~~~~~~~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/systeminfo.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory
    3 | #include <sys/systeminfo.h>
      |          ^~~~~~~~~~~~~~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory
    3 | #include <sys/systeminfo.h>
      |          ^~~~~~~~~~~~~~~~~~
compilation terminated.
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/times.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/times.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_SYS_TIMES_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/utsname.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/utsname.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_SYS_UTSNAME_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/socket.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/socket.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_SYS_SOCKET_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/wait.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/wait.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_SYS_WAIT_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: netinet/in.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <netinet/in.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_NETINET_IN_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: netdb.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <netdb.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_NETDB_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: direct.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <direct.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: direct.h: No such file or directory
    3 | #include <direct.h>
      |          ^~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <direct.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: direct.h: No such file or directory
    3 | #include <direct.h>
      |          ^~~~~~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: direct.h: No such file or directory
    3 | #include <direct.h>
      |          ^~~~~~~~~~
compilation terminated.
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: time.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <time.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_TIME_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: Ws2tcpip.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <Ws2tcpip.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory
    3 | #include <Ws2tcpip.h>
      |          ^~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <Ws2tcpip.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory
    3 | #include <Ws2tcpip.h>
      |          ^~~~~~~~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory
    3 | #include <Ws2tcpip.h>
      |          ^~~~~~~~~~~~
compilation terminated.
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/types.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_SYS_TYPES_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: WindowsX.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <WindowsX.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory
    3 | #include <WindowsX.h>
      |          ^~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <WindowsX.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory
    3 | #include <WindowsX.h>
      |          ^~~~~~~~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory
    3 | #include <WindowsX.h>
      |          ^~~~~~~~~~~~
compilation terminated.
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: float.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <float.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_FLOAT_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: ieeefp.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <ieeefp.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory
    3 | #include <ieeefp.h>
      |          ^~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <ieeefp.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory
    3 | #include <ieeefp.h>
      |          ^~~~~~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory
    3 | #include <ieeefp.h>
      |          ^~~~~~~~~~
compilation terminated.
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: stdint.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <stdint.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_STDINT_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: inttypes.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <inttypes.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_INTTYPES_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: immintrin.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <immintrin.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_IMMINTRIN_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: setjmp.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <setjmp.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_SETJMP_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: dos.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <dos.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory
    3 | #include <dos.h>
      |          ^~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <dos.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory
    3 | #include <dos.h>
      |          ^~~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory
    3 | #include <dos.h>
      |          ^~~~~~~
compilation terminated.
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: fcntl.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <fcntl.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_FCNTL_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: float.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <float.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_FLOAT_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: io.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <io.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory
    3 | #include <io.h>
      |          ^~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <io.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory
    3 | #include <io.h>
      |          ^~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory
    3 | #include <io.h>
      |          ^~~~~~
compilation terminated.
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: malloc.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <malloc.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_MALLOC_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: pwd.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <pwd.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_PWD_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: strings.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <strings.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_STRINGS_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: unistd.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <unistd.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_UNISTD_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: machine/endian.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <machine/endian.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory
    3 | #include <machine/endian.h>
      |          ^~~~~~~~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <machine/endian.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory
    3 | #include <machine/endian.h>
      |          ^~~~~~~~~~~~~~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory
    3 | #include <machine/endian.h>
      |          ^~~~~~~~~~~~~~~~~~
compilation terminated.
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/param.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/param.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_SYS_PARAM_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/procfs.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/procfs.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_SYS_PROCFS_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/resource.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/resource.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_SYS_RESOURCE_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/systeminfo.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/systeminfo.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory
    3 | #include <sys/systeminfo.h>
      |          ^~~~~~~~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/systeminfo.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory
    3 | #include <sys/systeminfo.h>
      |          ^~~~~~~~~~~~~~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory
    3 | #include <sys/systeminfo.h>
      |          ^~~~~~~~~~~~~~~~~~
compilation terminated.
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/times.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/times.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_SYS_TIMES_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/utsname.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/utsname.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_SYS_UTSNAME_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/socket.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/socket.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_SYS_SOCKET_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/wait.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/wait.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_SYS_WAIT_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: netinet/in.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <netinet/in.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_NETINET_IN_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: netdb.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <netdb.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_NETDB_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: direct.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <direct.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: direct.h: No such file or directory
    3 | #include <direct.h>
      |          ^~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <direct.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: direct.h: No such file or directory
    3 | #include <direct.h>
      |          ^~~~~~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: direct.h: No such file or directory
    3 | #include <direct.h>
      |          ^~~~~~~~~~
compilation terminated.
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: time.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <time.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_TIME_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: Ws2tcpip.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <Ws2tcpip.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory
    3 | #include <Ws2tcpip.h>
      |          ^~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <Ws2tcpip.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory
    3 | #include <Ws2tcpip.h>
      |          ^~~~~~~~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory
    3 | #include <Ws2tcpip.h>
      |          ^~~~~~~~~~~~
compilation terminated.
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: sys/types.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_SYS_TYPES_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: WindowsX.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <WindowsX.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory
    3 | #include <WindowsX.h>
      |          ^~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <WindowsX.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory
    3 | #include <WindowsX.h>
      |          ^~~~~~~~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory
    3 | #include <WindowsX.h>
      |          ^~~~~~~~~~~~
compilation terminated.
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: float.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <float.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_FLOAT_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: ieeefp.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <ieeefp.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory
    3 | #include <ieeefp.h>
      |          ^~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <ieeefp.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory
    3 | #include <ieeefp.h>
      |          ^~~~~~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory
    3 | #include <ieeefp.h>
      |          ^~~~~~~~~~
compilation terminated.
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: stdint.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <stdint.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_STDINT_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: inttypes.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <inttypes.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_INTTYPES_H" to "1"
=============================================================================================
TESTING: check from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:80)
  Checks for "header", and defines HAVE_"header" if found
Checking for header: immintrin.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <immintrin.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
            Defined "HAVE_IMMINTRIN_H" to "1"
=============================================================================================
TESTING: checkRecursiveMacros from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:198)
  Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.headers/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
void a(int i, int j) {}
#define a(b) a(b,__LINE__)

int main(void) {
a(0);

  return 0;
}

    child config.headers took 2.240143 seconds
=============================================================================================
TESTING: configureL1CacheLineSize from config.utilities.cacheDetails(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/utilities/cacheDetails.py:127)
  
    Try to determine the size (in bytes) of an L1 cacheline. On success defines the
    variable PETSC_LEVEL1_DCACHE_LINESIZE to the determined value.
    
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.cacheDetails/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <unistd.h>
long getconf_level1_dcache_linesize(void) {
  long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE);
  return val >= 0 ? val : 32;
}

int main(void) {
getconf_level1_dcache_linesize();
  return 0;
}

======== Checking running linked program
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.cacheDetails/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
#include <unistd.h>
long getconf_level1_dcache_linesize(void) {
  long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE);
  return val >= 0 ? val : 32;
}

int main(void) {
  FILE *output = fopen("conftestval", "w");
  if (!output) return 1;
  fprintf(output, "%ld", (long)getconf_level1_dcache_linesize());
  fclose(output);
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.utilities.cacheDetails/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.utilities.cacheDetails/conftest.o -ldl 
Testing executable /tmp/petsc-7m47ck2r/config.utilities.cacheDetails/conftest to see if it can be run
Executing: /tmp/petsc-7m47ck2r/config.utilities.cacheDetails/conftest
Running Executable with threads to time it out at 60
Executing: /tmp/petsc-7m47ck2r/config.utilities.cacheDetails/conftest
            Defined "LEVEL1_DCACHE_LINESIZE" to "64"
    child config.utilities.cacheDetails took 0.151234 seconds
=============================================================================================
TESTING: check_struct_sigaction from config.types(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/types.py:42)
  Checks if "struct sigaction" exists in signal.h. This check is for C89 check.
Checking for type: struct sigaction
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.types/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#include <sys/types.h>
#include <stdlib.h>
#include <stddef.h>
#include<signal.h>
    

int main(void) {
struct sigaction a;
(void)a;
  return 0;
}

struct sigaction found
            Defined "HAVE_STRUCT_SIGACTION" to "1"
=============================================================================================
TESTING: check__int64 from config.types(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/types.py:48)
  Checks if __int64 exists. This is primarily for windows.
Checking for type: __int64
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.types/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.types/conftest.c: In function ‘main’:
/tmp/petsc-7m47ck2r/config.types/conftest.c:11:1: error: unknown type name ‘__int64’; did you mean ‘__int64_t’?
   11 | __int64 a;
      | ^~~~~~~
      | __int64_t
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.types/conftest.c: In function ‘main’:
/tmp/petsc-7m47ck2r/config.types/conftest.c:11:1: error: unknown type name ‘__int64’; did you mean ‘__int64_t’?
   11 | __int64 a;
      | ^~~~~~~
      | __int64_t
Source:
#include "confdefs.h"
#include "conffix.h"

#include <sys/types.h>
#include <stdlib.h>
#include <stddef.h>

    

int main(void) {
__int64 a;
(void)a;
  return 0;
}

__int64 found
=============================================================================================
TESTING: checkSizeTypes from config.types(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/types.py:54)
  Checks for types associated with sizes, such as size_t.
Checking for type: size_t
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.types/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#include <sys/types.h>
#include <stdlib.h>
#include <stddef.h>

    

int main(void) {
size_t a;
(void)a;
  return 0;
}

size_t found
=============================================================================================
TESTING: checkFileTypes from config.types(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/types.py:64)
  Checks for types associated with files, such as mode_t, off_t, etc.
Checking for type: mode_t
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.types/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#include <sys/types.h>
#include <stdlib.h>
#include <stddef.h>

    

int main(void) {
mode_t a;
(void)a;
  return 0;
}

mode_t found
Checking for type: off_t
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.types/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#include <sys/types.h>
#include <stdlib.h>
#include <stddef.h>

    

int main(void) {
off_t a;
(void)a;
  return 0;
}

off_t found
=============================================================================================
TESTING: checkIntegerTypes from config.types(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/types.py:59)
  Checks for types associated with integers, such as int32_t.
Checking for type: int32_t
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.types/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#include <sys/types.h>
#include <stdlib.h>
#include <stddef.h>

    

int main(void) {
int32_t a;
(void)a;
  return 0;
}

int32_t found
=============================================================================================
TESTING: checkPID from config.types(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/types.py:70)
  Checks for pid_t, and defines it if necessary
Checking for type: pid_t
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.types/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#include <sys/types.h>
#include <stdlib.h>
#include <stddef.h>

    

int main(void) {
pid_t a;
(void)a;
  return 0;
}

pid_t found
=============================================================================================
TESTING: checkC99Complex from config.types(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/types.py:74)
  Check for complex numbers in C99 std
       Note that since PETSc source code uses _Complex we test specifically for that, not complex
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.types/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <complex.h>

int main(void) {
double _Complex x;
 x = I;
(void)x;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.types/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <complex.h>

int main(void) {
double _Complex x;
 x = I;
(void)x;
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.types/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.types/conftest.o -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.types/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#define _GNU_SOURCE
#include <complex.h>

int main(void) {
double _Complex x;
 x = I;
(void)x;
  return 0;
}

            Defined "HAVE_C99_COMPLEX" to "1"
=============================================================================================
TESTING: checkCxxComplex from config.types(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/types.py:88)
  Check for complex numbers in namespace std
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.types/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <complex>

int main(void) {
std::complex<double> x;
(void)x;
  return 0;
}

Executing: mpicxx  -o /tmp/petsc-7m47ck2r/config.types/conftest    -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-7m47ck2r/config.types/conftest.o -ldl 
            Defined "HAVE_CXX_COMPLEX" to "1"
=============================================================================================
TESTING: checkSizeof from config.types(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/types.py:99)
  Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: void *
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.types/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#include <sys/types.h>
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
char assert_sizeof[(sizeof(void *)==8)*2-1];

            Defined "SIZEOF_VOID_P" to "8"
=============================================================================================
TESTING: checkSizeof from config.types(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/types.py:99)
  Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: int
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.types/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#include <sys/types.h>
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
char assert_sizeof[(sizeof(int)==4)*2-1];

            Defined "SIZEOF_INT" to "4"
=============================================================================================
TESTING: checkSizeof from config.types(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/types.py:99)
  Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: long
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.types/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#include <sys/types.h>
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
char assert_sizeof[(sizeof(long)==8)*2-1];

            Defined "SIZEOF_LONG" to "8"
=============================================================================================
TESTING: checkSizeof from config.types(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/types.py:99)
  Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: long long
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.types/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#include <sys/types.h>
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
char assert_sizeof[(sizeof(long long)==8)*2-1];

            Defined "SIZEOF_LONG_LONG" to "8"
=============================================================================================
TESTING: checkSizeof from config.types(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/types.py:99)
  Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size
Checking for size of type: size_t
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.types/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#include <sys/types.h>
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>
char assert_sizeof[(sizeof(size_t)==8)*2-1];

            Defined "SIZEOF_SIZE_T" to "8"
        Defined "USING_64BIT_PTR" to "1"
=============================================================================================
TESTING: checkVisibility from config.types(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/types.py:133)
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.types/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
__attribute__((visibility ("default"))) int foo(void);
  return 0;
}

            Defined "USE_VISIBILITY_C" to "1"
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.types/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
__attribute__((visibility ("default"))) int foo(void);
  return 0;
}

            Defined "USE_VISIBILITY_CXX" to "1"
=============================================================================================
TESTING: checkMaxPathLen from config.types(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/types.py:155)
  Sets PETSC_MAX_PATH_LEN depending on values available on the system
Determining PETSC_MAX_PATH_LEN
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.types/conftest.o -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.types/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#include <sys/param.h>
#include <sys/types.h>
#if defined(MAXPATHLEN)
#  define PETSC_MAX_PATH_LEN MAXPATHLEN
#elif defined(MAX_PATH)
#  define PETSC_MAX_PATH_LEN MAX_PATH
#elif defined(_MAX_PATH)
#  define PETSC_MAX_PATH_LEN _MAX_PATH
#else
#  define PETSC_MAX_PATH_LEN 4096
#endif
#define xstr(s) str(s)
#define str(s) #s
char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN);

int main(void) {
  return 0;
}

Preprocessing source:
#include "confdefs.h"
#include "conffix.h"

#include <sys/param.h>
#include <sys/types.h>
#if defined(MAXPATHLEN)
#  define PETSC_MAX_PATH_LEN MAXPATHLEN
#elif defined(MAX_PATH)
#  define PETSC_MAX_PATH_LEN MAX_PATH
#elif defined(_MAX_PATH)
#  define PETSC_MAX_PATH_LEN _MAX_PATH
#else
#  define PETSC_MAX_PATH_LEN 4096
#endif
#define xstr(s) str(s)
#define str(s) #s
char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN);

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.types  /tmp/petsc-7m47ck2r/config.types/conftest.c 
            Defined "MAX_PATH_LEN" to "4096"
    child config.types took 1.368186 seconds
=============================================================================================
TESTING: configureMemAlign from PETSc.options.memAlign(/u/pa/bg/ntilton/petsc/config/PETSc/options/memAlign.py:28)
  Choose memory alignment
            Defined "MEMALIGN" to "16"
          Memory alignment is 16
    child PETSc.options.memAlign took 0.001954 seconds
=============================================================================================
TESTING: check from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:186)
  Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
       - libDir may be a list of directories
       - libName may be a list of library names
            Checking for functions [handle_sigfpes] in library ['fpe'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char handle_sigfpes(void);
static void _check_handle_sigfpes(void) { handle_sigfpes(); }

int main(void) {
_check_handle_sigfpes();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lfpe -ldl 
stdout:
/usr/bin/ld: cannot find -lfpe
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lfpe
collect2: error: ld returned 1 exit status
=============================================================================================
TESTING: check from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:186)
  Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
       - libDir may be a list of directories
       - libName may be a list of library names
            Checking for functions [socket] in library ['socket', 'nsl'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char socket(void);
static void _check_socket(void) { socket(); }

int main(void) {
_check_socket();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lsocket -lnsl -ldl 
stdout:
/usr/bin/ld: cannot find -lsocket
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lsocket
collect2: error: ld returned 1 exit status
=============================================================================================
TESTING: check from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:186)
  Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
       - libDir may be a list of directories
       - libName may be a list of library names
            Checking for functions [handle_sigfpes] in library ['fpe'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char handle_sigfpes(void);
static void _check_handle_sigfpes(void) { handle_sigfpes(); }

int main(void) {
_check_handle_sigfpes();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lfpe -ldl 
stdout:
/usr/bin/ld: cannot find -lfpe
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lfpe
collect2: error: ld returned 1 exit status
=============================================================================================
TESTING: check from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:186)
  Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
       - libDir may be a list of directories
       - libName may be a list of library names
            Checking for functions [socket] in library ['socket', 'nsl'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char socket(void);
static void _check_socket(void) { socket(); }

int main(void) {
_check_socket();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lsocket -lnsl -ldl 
stdout:
/usr/bin/ld: cannot find -lsocket
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lsocket
collect2: error: ld returned 1 exit status
=============================================================================================
TESTING: checkMath from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:315)
  Check for sin() in libm, the math library
            Checking for functions [sin floor log10 pow] in library [''] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <stdio.h>
double sin(double);
static void _check_sin(void) { double x,y; int s = scanf("%lf",&x); y = sin(x); printf("%f %d",y,s); }
#include <stdio.h>
double floor(double);
static void _check_floor(void) { double x,y; int s = scanf("%lf",&x); y = floor(x); printf("%f %d",y,s); }
#include <stdio.h>
double log10(double);
static void _check_log10(void) { double x,y; int s = scanf("%lf",&x); y = log10(x); printf("%f %d",y,s); }
#include <stdio.h>
double pow(double, double);
static void _check_pow(void) { double x,y; int s = scanf("%lf",&x); y = pow(x,x); printf("%f %d",y,s); }

int main(void) {
_check_sin();
_check_floor();
_check_log10();
_check_pow();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o   -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_sin':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:6: undefined reference to `sin'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_floor':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:9: undefined reference to `floor'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_log10':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:12: undefined reference to `log10'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_pow':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:15: undefined reference to `pow'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_sin':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:6: undefined reference to `sin'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_floor':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:9: undefined reference to `floor'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_log10':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:12: undefined reference to `log10'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_pow':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:15: undefined reference to `pow'
collect2: error: ld returned 1 exit status
            Checking for functions [sin floor log10 pow] in library ['m'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <stdio.h>
double sin(double);
static void _check_sin(void) { double x,y; int s = scanf("%lf",&x); y = sin(x); printf("%f %d",y,s); }
#include <stdio.h>
double floor(double);
static void _check_floor(void) { double x,y; int s = scanf("%lf",&x); y = floor(x); printf("%f %d",y,s); }
#include <stdio.h>
double log10(double);
static void _check_log10(void) { double x,y; int s = scanf("%lf",&x); y = log10(x); printf("%f %d",y,s); }
#include <stdio.h>
double pow(double, double);
static void _check_pow(void) { double x,y; int s = scanf("%lf",&x); y = pow(x,x); printf("%f %d",y,s); }

int main(void) {
_check_sin();
_check_floor();
_check_log10();
_check_pow();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lm -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <stdio.h>
double sin(double);
static void _check_sin(void) { double x,y; int s = scanf("%lf",&x); y = sin(x); printf("%f %d",y,s); }
#include <stdio.h>
double floor(double);
static void _check_floor(void) { double x,y; int s = scanf("%lf",&x); y = floor(x); printf("%f %d",y,s); }
#include <stdio.h>
double log10(double);
static void _check_log10(void) { double x,y; int s = scanf("%lf",&x); y = log10(x); printf("%f %d",y,s); }
#include <stdio.h>
double pow(double, double);
static void _check_pow(void) { double x,y; int s = scanf("%lf",&x); y = pow(x,x); printf("%f %d",y,s); }
void dummy(void) {_check_sin();
_check_floor();
_check_log10();
_check_pow();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -lm -ldl 
              Defined "HAVE_LIBM" to "1"
          CheckMath: using math library ['libm.a']
=============================================================================================
TESTING: checkMathErf from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:336)
  Check for erf() in libm, the math library
            Checking for functions [erf] in library ['libm.a'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <math.h>
static void _check_erf(void) { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); (void)y; }

int main(void) {
_check_erf();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lm -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <math.h>
static void _check_erf(void) { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); (void)y; }
void dummy(void) {_check_erf();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -lm -ldl 
              Defined "HAVE_LIBM" to "1"
          erf() found
            Defined "HAVE_ERF" to "1"
=============================================================================================
TESTING: checkMathTgamma from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:345)
  Check for tgamma() in libm, the math library
            Checking for functions [tgamma] in library ['libm.a'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <math.h>
static void _check_tgamma(void) { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); (void)y; }

int main(void) {
_check_tgamma();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lm -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <math.h>
static void _check_tgamma(void) { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); (void)y; }
void dummy(void) {_check_tgamma();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -lm -ldl 
              Defined "HAVE_LIBM" to "1"
          tgamma() found
            Defined "HAVE_TGAMMA" to "1"
=============================================================================================
TESTING: checkMathLgamma from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:354)
  Check for lgamma() in libm, the math library
            Checking for functions [lgamma] in library ['libm.a'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <math.h>
#include <stdlib.h>
static void _check_lgamma(void) { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); }

int main(void) {
_check_lgamma();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lm -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <math.h>
#include <stdlib.h>
static void _check_lgamma(void) { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); }
void dummy(void) {_check_lgamma();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -lm -ldl 
              Defined "HAVE_LIBM" to "1"
          lgamma() found
            Defined "HAVE_LGAMMA" to "1"
=============================================================================================
TESTING: checkMathFenv from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:367)
  Checks if <fenv.h> can be used with FE_DFL_ENV
            Checking for functions [fesetenv] in library ['libm.a'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <fenv.h>
static void _check_fesetenv(void) { fesetenv(FE_DFL_ENV); }

int main(void) {
_check_fesetenv();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lm -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <fenv.h>
static void _check_fesetenv(void) { fesetenv(FE_DFL_ENV); }
void dummy(void) {_check_fesetenv();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -lm -ldl 
              Defined "HAVE_LIBM" to "1"
            Defined "HAVE_FENV_H" to "1"
            Checking for functions [feclearexcept] in library ['libm.a'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <fenv.h>
static void _check_feclearexcept(void) { feclearexcept(FE_INEXACT); }

int main(void) {
_check_feclearexcept();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lm -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <fenv.h>
static void _check_feclearexcept(void) { feclearexcept(FE_INEXACT); }
void dummy(void) {_check_feclearexcept();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -lm -ldl 
              Defined "HAVE_LIBM" to "1"
            Defined "HAVE_FE_VALUES" to "1"
=============================================================================================
TESTING: checkMathLog2 from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:379)
  Check for log2() in libm, the math library
            Checking for functions [log2] in library ['libm.a'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <math.h>
static void _check_log2(void) { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); (void)y; }

int main(void) {
_check_log2();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lm -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <math.h>
static void _check_log2(void) { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); (void)y; }
void dummy(void) {_check_log2();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -lm -ldl 
              Defined "HAVE_LIBM" to "1"
          log2() found
            Defined "HAVE_LOG2" to "1"
=============================================================================================
TESTING: checkRealtime from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:388)
  Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions)
            Checking for functions [clock_gettime] in library [''] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <time.h>
static void _check_clock_gettime(void) { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp); }

int main(void) {
_check_clock_gettime();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o   -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <time.h>
static void _check_clock_gettime(void) { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp); }
void dummy(void) {_check_clock_gettime();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o   -ldl 
          realtime functions are linked in by default
=============================================================================================
TESTING: checkDynamic from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:404)
  Check for the header and libraries necessary for dynamic library manipulation
            Checking for functions [dlopen] in library ['dl'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char dlopen(void);
static void _check_dlopen(void) { dlopen(); }

int main(void) {
_check_dlopen();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -ldl -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char dlopen(void);
static void _check_dlopen(void) { dlopen(); }
void dummy(void) {_check_dlopen();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -ldl -ldl 
              Defined "HAVE_LIBDL" to "1"
Checking for header: dlfcn.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <dlfcn.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
              Defined "HAVE_DLFCN_H" to "1"
=============================================================================================
TESTING: checkPthreadMutex from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:630)
  Check for pthread mutex support
            Checking for functions [pthread_mutex_unlock] in library [''] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <pthread.h>
static void _check_pthread_mutex_unlock(void) { pthread_mutex_t m; pthread_mutex_unlock(&m); }

int main(void) {
_check_pthread_mutex_unlock();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o   -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <pthread.h>
static void _check_pthread_mutex_unlock(void) { pthread_mutex_t m; pthread_mutex_unlock(&m); }
void dummy(void) {_check_pthread_mutex_unlock();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o   -ldl 
          pthread mutex are linked in by default
            Defined "HAVE_PTHREAD_MUTEX" to "1"
=============================================================================================
TESTING: checkExecutableExportFlag from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:648)
  Checks for the flag that allows executables to export symbols to dlsym()
======== Checking running linked program
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#include <stdio.h>
#include <stdlib.h>
#ifdef PETSC_HAVE_DLFCN_H
#include <dlfcn.h>
#endif

#define PETSC_DLLEXPORT __attribute__((visibility ("default")))

extern PETSC_DLLEXPORT int foo(void) {
  return 42;
}
    

int main(void) {

  void *lib;
  int (*foo)(void);

  lib = dlopen(NULL, RTLD_LAZY);
  if (!lib) {
    fprintf(stderr, "Could not open executable: %s\n", dlerror());
    exit(1);
  }
  foo = (int (*)(void)) dlsym(lib, "foo");
  if (!foo) {
    fprintf(stderr, "Could not find function in executable\n");
    exit(1);
  }
  if ((*foo)() != 42) {
    fprintf(stderr, "Could not run function\n");
    exit(1);
  }
  
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.o -ldl  -ldl
Testing executable /tmp/petsc-7m47ck2r/config.libraries/conftest to see if it can be run
Executing: /tmp/petsc-7m47ck2r/config.libraries/conftest
Running Executable with threads to time it out at 60
Executing: /tmp/petsc-7m47ck2r/config.libraries/conftest
stdout: Could not find function in executable
ERROR while running executable: Could not execute "['/tmp/petsc-7m47ck2r/config.libraries/conftest']":
Could not find function in executable

            Executable does not export symbols for dlopen()
======== Checking running linked program
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 -Wl,-export_dynamic  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#include <stdio.h>
#include <stdlib.h>
#ifdef PETSC_HAVE_DLFCN_H
#include <dlfcn.h>
#endif

#define PETSC_DLLEXPORT __attribute__((visibility ("default")))

extern PETSC_DLLEXPORT int foo(void) {
  return 42;
}
    

int main(void) {

  void *lib;
  int (*foo)(void);

  lib = dlopen(NULL, RTLD_LAZY);
  if (!lib) {
    fprintf(stderr, "Could not open executable: %s\n", dlerror());
    exit(1);
  }
  foo = (int (*)(void)) dlsym(lib, "foo");
  if (!foo) {
    fprintf(stderr, "Could not find function in executable\n");
    exit(1);
  }
  if ((*foo)() != 42) {
    fprintf(stderr, "Could not run function\n");
    exit(1);
  }
  
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 -Wl,-export_dynamic /tmp/petsc-7m47ck2r/config.libraries/conftest.o -ldl  -ldl
stdout: /usr/bin/ld: warning: cannot find entry symbol xport_dynamic; defaulting to 0000000000001100
Possible ERROR while running linker:exit code 0
stderr:
/usr/bin/ld: warning: cannot find entry symbol xport_dynamic; defaulting to 0000000000001100
Testing executable /tmp/petsc-7m47ck2r/config.libraries/conftest to see if it can be run
Executing: /tmp/petsc-7m47ck2r/config.libraries/conftest
Running Executable with threads to time it out at 60
Executing: /tmp/petsc-7m47ck2r/config.libraries/conftest
stdout: Could not find function in executable
ERROR while running executable: Could not execute "['/tmp/petsc-7m47ck2r/config.libraries/conftest']":
Could not find function in executable

            Executable does not export symbols for dlopen()
======== Checking running linked program
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 -Wl,-export-dynamic  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#include <stdio.h>
#include <stdlib.h>
#ifdef PETSC_HAVE_DLFCN_H
#include <dlfcn.h>
#endif

#define PETSC_DLLEXPORT __attribute__((visibility ("default")))

extern PETSC_DLLEXPORT int foo(void) {
  return 42;
}
    

int main(void) {

  void *lib;
  int (*foo)(void);

  lib = dlopen(NULL, RTLD_LAZY);
  if (!lib) {
    fprintf(stderr, "Could not open executable: %s\n", dlerror());
    exit(1);
  }
  foo = (int (*)(void)) dlsym(lib, "foo");
  if (!foo) {
    fprintf(stderr, "Could not find function in executable\n");
    exit(1);
  }
  if ((*foo)() != 42) {
    fprintf(stderr, "Could not run function\n");
    exit(1);
  }
  
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 -Wl,-export-dynamic /tmp/petsc-7m47ck2r/config.libraries/conftest.o -ldl  -ldl
Testing executable /tmp/petsc-7m47ck2r/config.libraries/conftest to see if it can be run
Executing: /tmp/petsc-7m47ck2r/config.libraries/conftest
Running Executable with threads to time it out at 60
Executing: /tmp/petsc-7m47ck2r/config.libraries/conftest
            Executable exports symbols for dlopen()
            Defined "HAVE_EXECUTABLE_EXPORT" to "1"
            Defined make macro "EXEFLAGS" to "-Wl,-export-dynamic"
    child config.libraries took 3.603153 seconds
=============================================================================================
TESTING: configureLibraryOptions from PETSc.options.libraryOptions(/u/pa/bg/ntilton/petsc/config/PETSc/options/libraryOptions.py:38)
  Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_DMLANDAU_2D, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS
            Defined "USE_LOG" to "1"
            Defined "USE_DEBUG" to "1"
            Defined "USE_INFO" to "1"
            Defined "USE_CTABLE" to "1"
            Defined "USE_DMLANDAU_2D" to "1"
            **********Checking if running on BGL/IBM detected
              Checking for functions [bgl_perfctr_void] in library [''] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char bgl_perfctr_void(void);
static void _check_bgl_perfctr_void(void) { bgl_perfctr_void(); }

int main(void) {
_check_bgl_perfctr_void();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o   -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_bgl_perfctr_void':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_bgl_perfctr_void':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void'
collect2: error: ld returned 1 exit status
              Checking for functions [ADIOI_BGL_Open] in library [''] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char ADIOI_BGL_Open(void);
static void _check_ADIOI_BGL_Open(void) { ADIOI_BGL_Open(); }

int main(void) {
_check_ADIOI_BGL_Open();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o   -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_ADIOI_BGL_Open':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_ADIOI_BGL_Open':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open'
collect2: error: ld returned 1 exit status
            *********BGL/IBM test failure
            Defined "USE_BACKWARD_LOOP" to "1"
            Defined "USE_AVX512_KERNELS" to "1"
=============================================================================================
TESTING: configureISColorValueType from PETSc.options.libraryOptions(/u/pa/bg/ntilton/petsc/config/PETSc/options/libraryOptions.py:93)
  Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring
            Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT"
            Defined "IS_COLORING_MAX" to "USHRT_MAX"
            Defined "IS_COLORING_VALUE_TYPE" to "short"
            Defined "IS_COLORING_VALUE_TYPE_F" to "integer2"
    child PETSc.options.libraryOptions took 0.205183 seconds
    child config.atomics took 0.000025 seconds
=============================================================================================
TESTING: checkVSNPrintf from config.functions(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/functions.py:106)
  Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
#include <stdarg.h>

int main(void) {
va_list Argp = { 0 };char str[6];
vsnprintf(str,5, "%d", Argp );
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
            Defined "HAVE_VSNPRINTF" to "1"
=============================================================================================
TESTING: checkNanosleep from config.functions(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/functions.py:136)
  Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <time.h>

int main(void) {
struct timespec tp;
 tp.tv_sec = 0;
 tp.tv_nsec = (long)(1e9);
 nanosleep(&tp,0);
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
            Defined "HAVE_NANOSLEEP" to "1"
=============================================================================================
TESTING: checkMemmove from config.functions(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/functions.py:142)
  Check for functional memmove() - as MS VC requires correct includes to for this test
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <string.h>

int main(void) {
 char c1[1], c2[1] = "c";
 size_t n=1;
 memmove(c1,c2,n);
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
            Defined "HAVE_MEMMOVE" to "1"
=============================================================================================
TESTING: checkSignalHandlerType from config.functions(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/functions.py:112)
  Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.functions/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>
static void myhandler(int sig) { (void)sig; }

int main(void) {
signal(SIGFPE,myhandler);
  return 0;
}

Executing: mpicxx  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
            Defined "SIGNAL_CAST" to " "
=============================================================================================
TESTING: checkFreeReturnType from config.functions(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/functions.py:122)
  Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.functions/conftest.c: In function ‘main’:
/tmp/petsc-7m47ck2r/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be
    6 | int ierr; void *p; ierr = free(p); return ierr;
      |                         ^
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.functions/conftest.c: In function ‘main’:
/tmp/petsc-7m47ck2r/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be
    6 | int ierr; void *p; ierr = free(p); return ierr;
      |                         ^
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdlib.h>

int main(void) {
int ierr; void *p; ierr = free(p); return ierr;
  return 0;
}

              Compile failed inside link

=============================================================================================
TESTING: checkVariableArgumentLists from config.functions(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/functions.py:128)
  Checks whether the variable argument list functionality is working
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdarg.h>

int main(void) {
  va_list l1, l2;
  va_copy(l1, l2);
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
            Defined "HAVE_VA_COPY" to "1"
=============================================================================================
TESTING: checkClassify from config.functions(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/functions.py:85)
  Recursive decompose to rapidly classify functions as found or missing
    To confirm that a function is missing, we require a compile/link
    failure with only that function in a compilation unit.  In contrast,
    we can confirm that many functions are present by compiling them all
    together in a large compilation unit.  We optimistically compile
    everything together, then trim all functions that were named in the
    error message and bisect the result.  The trimming is only an
    optimization to increase the likelihood of a big-batch compile
    succeeding; we do not rely on the compiler naming missing functions.
    
Checking for functions [stricmp time _sleep clock realpath uname dlsym fork _getcwd dlerror dlopen gethostname sleep getcwd _snprintf snprintf bzero getrusage socket dlclose _set_output_format drand48 posix_memalign lseek readlink rand _lseek gethostbyname sbreak __gcov_dump access _access PXFGETARG usleep _mkdir getpagesize getdomainname popen fpresetsticky fpsetsticky strcasecmp]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.functions/conftest.c:20:6: warning: conflicting types for built-in function ‘fork’; expected ‘int(void)’ [-Wbuiltin-declaration-mismatch]
   20 | char fork(void);
      |      ^~~~
/tmp/petsc-7m47ck2r/config.functions/conftest.c:28:6: warning: conflicting types for built-in function ‘snprintf’; expected ‘int(char *, long unsigned int,  const char *, ...)’ [-Wbuiltin-declaration-mismatch]
   28 | char snprintf(void);
      |      ^~~~~~~~
/tmp/petsc-7m47ck2r/config.functions/conftest.c:6:1: note: ‘snprintf’ is declared in header ‘<stdio.h>’
    5 | #include <assert.h>
  +++ |+#include <stdio.h>
    6 | /* Override any gcc2 internal prototype to avoid an error. */
/tmp/petsc-7m47ck2r/config.functions/conftest.c:29:6: warning: conflicting types for built-in function ‘bzero’; expected ‘void(void *, long unsigned int)’ [-Wbuiltin-declaration-mismatch]
   29 | char bzero(void);
      |      ^~~~~
/tmp/petsc-7m47ck2r/config.functions/conftest.c:35:6: warning: conflicting types for built-in function ‘posix_memalign’; expected ‘int(void **, long unsigned int,  long unsigned int)’ [-Wbuiltin-declaration-mismatch]
   35 | char posix_memalign(void);
      |      ^~~~~~~~~~~~~~
/tmp/petsc-7m47ck2r/config.functions/conftest.c:53:6: warning: conflicting types for built-in function ‘strcasecmp’; expected ‘int(const char *, const char *)’ [-Wbuiltin-declaration-mismatch]
   53 | char strcasecmp(void);
      |      ^~~~~~~~~~
Possible ERROR while running compiler:exit code 0
stderr:
/tmp/petsc-7m47ck2r/config.functions/conftest.c:20:6: warning: conflicting types for built-in function ‘fork’; expected ‘int(void)’ [-Wbuiltin-declaration-mismatch]
   20 | char fork(void);
      |      ^~~~
/tmp/petsc-7m47ck2r/config.functions/conftest.c:28:6: warning: conflicting types for built-in function ‘snprintf’; expected ‘int(char *, long unsigned int,  const char *, ...)’ [-Wbuiltin-declaration-mismatch]
   28 | char snprintf(void);
      |      ^~~~~~~~
/tmp/petsc-7m47ck2r/config.functions/conftest.c:6:1: note: ‘snprintf’ is declared in header ‘<stdio.h>’
    5 | #include <assert.h>
  +++ |+#include <stdio.h>
    6 | /* Override any gcc2 internal prototype to avoid an error. */
/tmp/petsc-7m47ck2r/config.functions/conftest.c:29:6: warning: conflicting types for built-in function ‘bzero’; expected ‘void(void *, long unsigned int)’ [-Wbuiltin-declaration-mismatch]
   29 | char bzero(void);
      |      ^~~~~
/tmp/petsc-7m47ck2r/config.functions/conftest.c:35:6: warning: conflicting types for built-in function ‘posix_memalign’; expected ‘int(void **, long unsigned int,  long unsigned int)’ [-Wbuiltin-declaration-mismatch]
   35 | char posix_memalign(void);
      |      ^~~~~~~~~~~~~~
/tmp/petsc-7m47ck2r/config.functions/conftest.c:53:6: warning: conflicting types for built-in function ‘strcasecmp’; expected ‘int(const char *, const char *)’ [-Wbuiltin-declaration-mismatch]
   53 | char strcasecmp(void);
      |      ^~~~~~~~~~
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char stricmp(void);
char time(void);
char _sleep(void);
char clock(void);
char realpath(void);
char uname(void);
char dlsym(void);
char fork(void);
char _getcwd(void);
char dlerror(void);
char dlopen(void);
char gethostname(void);
char sleep(void);
char getcwd(void);
char _snprintf(void);
char snprintf(void);
char bzero(void);
char getrusage(void);
char socket(void);
char dlclose(void);
char _set_output_format(void);
char drand48(void);
char posix_memalign(void);
char lseek(void);
char readlink(void);
char rand(void);
char _lseek(void);
char gethostbyname(void);
char sbreak(void);
char __gcov_dump(void);
char access(void);
char _access(void);
char PXFGETARG(void);
char usleep(void);
char _mkdir(void);
char getpagesize(void);
char getdomainname(void);
char popen(void);
char fpresetsticky(void);
char fpsetsticky(void);
char strcasecmp(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub_stricmp) || defined (__stub___stricmp)
stricmp_will_always_fail_with_ENOSYS();
#else
stricmp();
#endif

#if defined (__stub_time) || defined (__stub___time)
time_will_always_fail_with_ENOSYS();
#else
time();
#endif

#if defined (__stub__sleep) || defined (__stub____sleep)
_sleep_will_always_fail_with_ENOSYS();
#else
_sleep();
#endif

#if defined (__stub_clock) || defined (__stub___clock)
clock_will_always_fail_with_ENOSYS();
#else
clock();
#endif

#if defined (__stub_realpath) || defined (__stub___realpath)
realpath_will_always_fail_with_ENOSYS();
#else
realpath();
#endif

#if defined (__stub_uname) || defined (__stub___uname)
uname_will_always_fail_with_ENOSYS();
#else
uname();
#endif

#if defined (__stub_dlsym) || defined (__stub___dlsym)
dlsym_will_always_fail_with_ENOSYS();
#else
dlsym();
#endif

#if defined (__stub_fork) || defined (__stub___fork)
fork_will_always_fail_with_ENOSYS();
#else
fork();
#endif

#if defined (__stub__getcwd) || defined (__stub____getcwd)
_getcwd_will_always_fail_with_ENOSYS();
#else
_getcwd();
#endif

#if defined (__stub_dlerror) || defined (__stub___dlerror)
dlerror_will_always_fail_with_ENOSYS();
#else
dlerror();
#endif

#if defined (__stub_dlopen) || defined (__stub___dlopen)
dlopen_will_always_fail_with_ENOSYS();
#else
dlopen();
#endif

#if defined (__stub_gethostname) || defined (__stub___gethostname)
gethostname_will_always_fail_with_ENOSYS();
#else
gethostname();
#endif

#if defined (__stub_sleep) || defined (__stub___sleep)
sleep_will_always_fail_with_ENOSYS();
#else
sleep();
#endif

#if defined (__stub_getcwd) || defined (__stub___getcwd)
getcwd_will_always_fail_with_ENOSYS();
#else
getcwd();
#endif

#if defined (__stub__snprintf) || defined (__stub____snprintf)
_snprintf_will_always_fail_with_ENOSYS();
#else
_snprintf();
#endif

#if defined (__stub_snprintf) || defined (__stub___snprintf)
snprintf_will_always_fail_with_ENOSYS();
#else
snprintf();
#endif

#if defined (__stub_bzero) || defined (__stub___bzero)
bzero_will_always_fail_with_ENOSYS();
#else
bzero();
#endif

#if defined (__stub_getrusage) || defined (__stub___getrusage)
getrusage_will_always_fail_with_ENOSYS();
#else
getrusage();
#endif

#if defined (__stub_socket) || defined (__stub___socket)
socket_will_always_fail_with_ENOSYS();
#else
socket();
#endif

#if defined (__stub_dlclose) || defined (__stub___dlclose)
dlclose_will_always_fail_with_ENOSYS();
#else
dlclose();
#endif

#if defined (__stub__set_output_format) || defined (__stub____set_output_format)
_set_output_format_will_always_fail_with_ENOSYS();
#else
_set_output_format();
#endif

#if defined (__stub_drand48) || defined (__stub___drand48)
drand48_will_always_fail_with_ENOSYS();
#else
drand48();
#endif

#if defined (__stub_posix_memalign) || defined (__stub___posix_memalign)
posix_memalign_will_always_fail_with_ENOSYS();
#else
posix_memalign();
#endif

#if defined (__stub_lseek) || defined (__stub___lseek)
lseek_will_always_fail_with_ENOSYS();
#else
lseek();
#endif

#if defined (__stub_readlink) || defined (__stub___readlink)
readlink_will_always_fail_with_ENOSYS();
#else
readlink();
#endif

#if defined (__stub_rand) || defined (__stub___rand)
rand_will_always_fail_with_ENOSYS();
#else
rand();
#endif

#if defined (__stub__lseek) || defined (__stub____lseek)
_lseek_will_always_fail_with_ENOSYS();
#else
_lseek();
#endif

#if defined (__stub_gethostbyname) || defined (__stub___gethostbyname)
gethostbyname_will_always_fail_with_ENOSYS();
#else
gethostbyname();
#endif

#if defined (__stub_sbreak) || defined (__stub___sbreak)
sbreak_will_always_fail_with_ENOSYS();
#else
sbreak();
#endif

#if defined (__stub___gcov_dump) || defined (__stub_____gcov_dump)
__gcov_dump_will_always_fail_with_ENOSYS();
#else
__gcov_dump();
#endif

#if defined (__stub_access) || defined (__stub___access)
access_will_always_fail_with_ENOSYS();
#else
access();
#endif

#if defined (__stub__access) || defined (__stub____access)
_access_will_always_fail_with_ENOSYS();
#else
_access();
#endif

#if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG)
PXFGETARG_will_always_fail_with_ENOSYS();
#else
PXFGETARG();
#endif

#if defined (__stub_usleep) || defined (__stub___usleep)
usleep_will_always_fail_with_ENOSYS();
#else
usleep();
#endif

#if defined (__stub__mkdir) || defined (__stub____mkdir)
_mkdir_will_always_fail_with_ENOSYS();
#else
_mkdir();
#endif

#if defined (__stub_getpagesize) || defined (__stub___getpagesize)
getpagesize_will_always_fail_with_ENOSYS();
#else
getpagesize();
#endif

#if defined (__stub_getdomainname) || defined (__stub___getdomainname)
getdomainname_will_always_fail_with_ENOSYS();
#else
getdomainname();
#endif

#if defined (__stub_popen) || defined (__stub___popen)
popen_will_always_fail_with_ENOSYS();
#else
popen();
#endif

#if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky)
fpresetsticky_will_always_fail_with_ENOSYS();
#else
fpresetsticky();
#endif

#if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky)
fpsetsticky_will_always_fail_with_ENOSYS();
#else
fpsetsticky();
#endif

#if defined (__stub_strcasecmp) || defined (__stub___strcasecmp)
strcasecmp_will_always_fail_with_ENOSYS();
#else
strcasecmp();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:64: undefined reference to `stricmp'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:76: undefined reference to `_sleep'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:112: undefined reference to `_getcwd'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:148: undefined reference to `_snprintf'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:184: undefined reference to `_set_output_format'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:220: undefined reference to `_lseek'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:232: undefined reference to `sbreak'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:238: undefined reference to `__gcov_dump'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:250: undefined reference to `_access'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:256: undefined reference to `PXFGETARG'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:268: undefined reference to `_mkdir'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:292: undefined reference to `fpresetsticky'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:298: undefined reference to `fpsetsticky'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:64: undefined reference to `stricmp'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:76: undefined reference to `_sleep'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:112: undefined reference to `_getcwd'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:148: undefined reference to `_snprintf'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:184: undefined reference to `_set_output_format'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:220: undefined reference to `_lseek'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:232: undefined reference to `sbreak'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:238: undefined reference to `__gcov_dump'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:250: undefined reference to `_access'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:256: undefined reference to `PXFGETARG'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:268: undefined reference to `_mkdir'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:292: undefined reference to `fpresetsticky'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.c:298: undefined reference to `fpsetsticky'
collect2: error: ld returned 1 exit status
Checking for functions [time clock realpath uname dlsym fork dlerror dlopen gethostname bzero getrusage]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.functions/conftest.c:18:6: warning: conflicting types for built-in function ‘fork’; expected ‘int(void)’ [-Wbuiltin-declaration-mismatch]
   18 | char fork(void);
      |      ^~~~
/tmp/petsc-7m47ck2r/config.functions/conftest.c:22:6: warning: conflicting types for built-in function ‘bzero’; expected ‘void(void *, long unsigned int)’ [-Wbuiltin-declaration-mismatch]
   22 | char bzero(void);
      |      ^~~~~
Possible ERROR while running compiler:exit code 0
stderr:
/tmp/petsc-7m47ck2r/config.functions/conftest.c:18:6: warning: conflicting types for built-in function ‘fork’; expected ‘int(void)’ [-Wbuiltin-declaration-mismatch]
   18 | char fork(void);
      |      ^~~~
/tmp/petsc-7m47ck2r/config.functions/conftest.c:22:6: warning: conflicting types for built-in function ‘bzero’; expected ‘void(void *, long unsigned int)’ [-Wbuiltin-declaration-mismatch]
   22 | char bzero(void);
      |      ^~~~~
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char time(void);
char clock(void);
char realpath(void);
char uname(void);
char dlsym(void);
char fork(void);
char dlerror(void);
char dlopen(void);
char gethostname(void);
char bzero(void);
char getrusage(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub_time) || defined (__stub___time)
time_will_always_fail_with_ENOSYS();
#else
time();
#endif

#if defined (__stub_clock) || defined (__stub___clock)
clock_will_always_fail_with_ENOSYS();
#else
clock();
#endif

#if defined (__stub_realpath) || defined (__stub___realpath)
realpath_will_always_fail_with_ENOSYS();
#else
realpath();
#endif

#if defined (__stub_uname) || defined (__stub___uname)
uname_will_always_fail_with_ENOSYS();
#else
uname();
#endif

#if defined (__stub_dlsym) || defined (__stub___dlsym)
dlsym_will_always_fail_with_ENOSYS();
#else
dlsym();
#endif

#if defined (__stub_fork) || defined (__stub___fork)
fork_will_always_fail_with_ENOSYS();
#else
fork();
#endif

#if defined (__stub_dlerror) || defined (__stub___dlerror)
dlerror_will_always_fail_with_ENOSYS();
#else
dlerror();
#endif

#if defined (__stub_dlopen) || defined (__stub___dlopen)
dlopen_will_always_fail_with_ENOSYS();
#else
dlopen();
#endif

#if defined (__stub_gethostname) || defined (__stub___gethostname)
gethostname_will_always_fail_with_ENOSYS();
#else
gethostname();
#endif

#if defined (__stub_bzero) || defined (__stub___bzero)
bzero_will_always_fail_with_ENOSYS();
#else
bzero();
#endif

#if defined (__stub_getrusage) || defined (__stub___getrusage)
getrusage_will_always_fail_with_ENOSYS();
#else
getrusage();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
                    Defined "HAVE_TIME" to "1"
                    Defined "HAVE_CLOCK" to "1"
                    Defined "HAVE_REALPATH" to "1"
                    Defined "HAVE_UNAME" to "1"
                    Defined "HAVE_DLSYM" to "1"
                    Defined "HAVE_FORK" to "1"
                    Defined "HAVE_DLERROR" to "1"
                    Defined "HAVE_DLOPEN" to "1"
                    Defined "HAVE_GETHOSTNAME" to "1"
                    Defined "HAVE_BZERO" to "1"
                    Defined "HAVE_GETRUSAGE" to "1"
Checking for functions [socket dlclose drand48 posix_memalign readlink rand gethostbyname usleep getpagesize getdomainname popen strcasecmp]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.functions/conftest.c:16:6: warning: conflicting types for built-in function ‘posix_memalign’; expected ‘int(void **, long unsigned int,  long unsigned int)’ [-Wbuiltin-declaration-mismatch]
   16 | char posix_memalign(void);
      |      ^~~~~~~~~~~~~~
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24:6: warning: conflicting types for built-in function ‘strcasecmp’; expected ‘int(const char *, const char *)’ [-Wbuiltin-declaration-mismatch]
   24 | char strcasecmp(void);
      |      ^~~~~~~~~~
Possible ERROR while running compiler:exit code 0
stderr:
/tmp/petsc-7m47ck2r/config.functions/conftest.c:16:6: warning: conflicting types for built-in function ‘posix_memalign’; expected ‘int(void **, long unsigned int,  long unsigned int)’ [-Wbuiltin-declaration-mismatch]
   16 | char posix_memalign(void);
      |      ^~~~~~~~~~~~~~
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24:6: warning: conflicting types for built-in function ‘strcasecmp’; expected ‘int(const char *, const char *)’ [-Wbuiltin-declaration-mismatch]
   24 | char strcasecmp(void);
      |      ^~~~~~~~~~
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char socket(void);
char dlclose(void);
char drand48(void);
char posix_memalign(void);
char readlink(void);
char rand(void);
char gethostbyname(void);
char usleep(void);
char getpagesize(void);
char getdomainname(void);
char popen(void);
char strcasecmp(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub_socket) || defined (__stub___socket)
socket_will_always_fail_with_ENOSYS();
#else
socket();
#endif

#if defined (__stub_dlclose) || defined (__stub___dlclose)
dlclose_will_always_fail_with_ENOSYS();
#else
dlclose();
#endif

#if defined (__stub_drand48) || defined (__stub___drand48)
drand48_will_always_fail_with_ENOSYS();
#else
drand48();
#endif

#if defined (__stub_posix_memalign) || defined (__stub___posix_memalign)
posix_memalign_will_always_fail_with_ENOSYS();
#else
posix_memalign();
#endif

#if defined (__stub_readlink) || defined (__stub___readlink)
readlink_will_always_fail_with_ENOSYS();
#else
readlink();
#endif

#if defined (__stub_rand) || defined (__stub___rand)
rand_will_always_fail_with_ENOSYS();
#else
rand();
#endif

#if defined (__stub_gethostbyname) || defined (__stub___gethostbyname)
gethostbyname_will_always_fail_with_ENOSYS();
#else
gethostbyname();
#endif

#if defined (__stub_usleep) || defined (__stub___usleep)
usleep_will_always_fail_with_ENOSYS();
#else
usleep();
#endif

#if defined (__stub_getpagesize) || defined (__stub___getpagesize)
getpagesize_will_always_fail_with_ENOSYS();
#else
getpagesize();
#endif

#if defined (__stub_getdomainname) || defined (__stub___getdomainname)
getdomainname_will_always_fail_with_ENOSYS();
#else
getdomainname();
#endif

#if defined (__stub_popen) || defined (__stub___popen)
popen_will_always_fail_with_ENOSYS();
#else
popen();
#endif

#if defined (__stub_strcasecmp) || defined (__stub___strcasecmp)
strcasecmp_will_always_fail_with_ENOSYS();
#else
strcasecmp();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
                    Defined "HAVE_SOCKET" to "1"
                    Defined "HAVE_DLCLOSE" to "1"
                    Defined "HAVE_DRAND48" to "1"
                    Defined "HAVE_POSIX_MEMALIGN" to "1"
                    Defined "HAVE_READLINK" to "1"
                    Defined "HAVE_RAND" to "1"
                    Defined "HAVE_GETHOSTBYNAME" to "1"
                    Defined "HAVE_USLEEP" to "1"
                    Defined "HAVE_GETPAGESIZE" to "1"
                    Defined "HAVE_GETDOMAINNAME" to "1"
                    Defined "HAVE_POPEN" to "1"
                    Defined "HAVE_STRCASECMP" to "1"
Checking for functions [stricmp]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char stricmp(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub_stricmp) || defined (__stub___stricmp)
stricmp_will_always_fail_with_ENOSYS();
#else
stricmp();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `stricmp'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `stricmp'
collect2: error: ld returned 1 exit status
Checking for functions [_sleep]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _sleep(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub__sleep) || defined (__stub____sleep)
_sleep_will_always_fail_with_ENOSYS();
#else
_sleep();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `_sleep'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `_sleep'
collect2: error: ld returned 1 exit status
Checking for functions [_getcwd]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _getcwd(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub__getcwd) || defined (__stub____getcwd)
_getcwd_will_always_fail_with_ENOSYS();
#else
_getcwd();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `_getcwd'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `_getcwd'
collect2: error: ld returned 1 exit status
Checking for functions [sleep]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char sleep(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub_sleep) || defined (__stub___sleep)
sleep_will_always_fail_with_ENOSYS();
#else
sleep();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
                    Defined "HAVE_SLEEP" to "1"
Checking for functions [getcwd]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char getcwd(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub_getcwd) || defined (__stub___getcwd)
getcwd_will_always_fail_with_ENOSYS();
#else
getcwd();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
                    Defined "HAVE_GETCWD" to "1"
Checking for functions [_snprintf]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _snprintf(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub__snprintf) || defined (__stub____snprintf)
_snprintf_will_always_fail_with_ENOSYS();
#else
_snprintf();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `_snprintf'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `_snprintf'
collect2: error: ld returned 1 exit status
Checking for functions [snprintf]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘snprintf’; expected ‘int(char *, long unsigned int,  const char *, ...)’ [-Wbuiltin-declaration-mismatch]
   13 | char snprintf(void);
      |      ^~~~~~~~
/tmp/petsc-7m47ck2r/config.functions/conftest.c:6:1: note: ‘snprintf’ is declared in header ‘<stdio.h>’
    5 | #include <assert.h>
  +++ |+#include <stdio.h>
    6 | /* Override any gcc2 internal prototype to avoid an error. */
Possible ERROR while running compiler:exit code 0
stderr:
/tmp/petsc-7m47ck2r/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘snprintf’; expected ‘int(char *, long unsigned int,  const char *, ...)’ [-Wbuiltin-declaration-mismatch]
   13 | char snprintf(void);
      |      ^~~~~~~~
/tmp/petsc-7m47ck2r/config.functions/conftest.c:6:1: note: ‘snprintf’ is declared in header ‘<stdio.h>’
    5 | #include <assert.h>
  +++ |+#include <stdio.h>
    6 | /* Override any gcc2 internal prototype to avoid an error. */
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char snprintf(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub_snprintf) || defined (__stub___snprintf)
snprintf_will_always_fail_with_ENOSYS();
#else
snprintf();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
                    Defined "HAVE_SNPRINTF" to "1"
Checking for functions [_set_output_format]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _set_output_format(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub__set_output_format) || defined (__stub____set_output_format)
_set_output_format_will_always_fail_with_ENOSYS();
#else
_set_output_format();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `_set_output_format'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `_set_output_format'
collect2: error: ld returned 1 exit status
Checking for functions [lseek]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char lseek(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub_lseek) || defined (__stub___lseek)
lseek_will_always_fail_with_ENOSYS();
#else
lseek();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
                    Defined "HAVE_LSEEK" to "1"
Checking for functions [_lseek]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _lseek(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub__lseek) || defined (__stub____lseek)
_lseek_will_always_fail_with_ENOSYS();
#else
_lseek();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `_lseek'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `_lseek'
collect2: error: ld returned 1 exit status
Checking for functions [sbreak]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char sbreak(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub_sbreak) || defined (__stub___sbreak)
sbreak_will_always_fail_with_ENOSYS();
#else
sbreak();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `sbreak'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `sbreak'
collect2: error: ld returned 1 exit status
Checking for functions [__gcov_dump]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char __gcov_dump(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub___gcov_dump) || defined (__stub_____gcov_dump)
__gcov_dump_will_always_fail_with_ENOSYS();
#else
__gcov_dump();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `__gcov_dump'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `__gcov_dump'
collect2: error: ld returned 1 exit status
Checking for functions [access]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char access(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub_access) || defined (__stub___access)
access_will_always_fail_with_ENOSYS();
#else
access();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
                    Defined "HAVE_ACCESS" to "1"
Checking for functions [_access]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _access(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub__access) || defined (__stub____access)
_access_will_always_fail_with_ENOSYS();
#else
_access();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `_access'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `_access'
collect2: error: ld returned 1 exit status
Checking for functions [PXFGETARG]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char PXFGETARG(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG)
PXFGETARG_will_always_fail_with_ENOSYS();
#else
PXFGETARG();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `PXFGETARG'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `PXFGETARG'
collect2: error: ld returned 1 exit status
Checking for functions [_mkdir]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char _mkdir(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub__mkdir) || defined (__stub____mkdir)
_mkdir_will_always_fail_with_ENOSYS();
#else
_mkdir();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `_mkdir'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `_mkdir'
collect2: error: ld returned 1 exit status
Checking for functions [fpresetsticky]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char fpresetsticky(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky)
fpresetsticky_will_always_fail_with_ENOSYS();
#else
fpresetsticky();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `fpresetsticky'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `fpresetsticky'
collect2: error: ld returned 1 exit status
Checking for functions [fpsetsticky]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char fpsetsticky(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky)
fpsetsticky_will_always_fail_with_ENOSYS();
#else
fpsetsticky();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `fpsetsticky'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:24: undefined reference to `fpsetsticky'
collect2: error: ld returned 1 exit status
Executing: mpicc -v
stdout:
Using built-in specs.
COLLECT_GCC=/usr/bin/gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.4.0-1ubuntu1~20.04.2' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-9QDOt0/gcc-9-9.4.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.4.0 (Ubuntu 9.4.0-1ubuntu1~20.04.2)
=============================================================================================
TESTING: checkMmap from config.functions(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/functions.py:148)
  Check for functional mmap() to allocate shared memory and define HAVE_MMAP
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.functions/conftest.c: In function ‘main’:
/tmp/petsc-7m47ck2r/config.functions/conftest.c:11:7: error: ‘NULL’ undeclared (first use in this function)
   11 |  mmap(NULL,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0);
      |       ^~~~
/tmp/petsc-7m47ck2r/config.functions/conftest.c:7:1: note: ‘NULL’ is defined in header ‘<stddef.h>’; did you forget to ‘#include <stddef.h>’?
    6 | #include <fcntl.h>
  +++ |+#include <stddef.h>
    7 | 
/tmp/petsc-7m47ck2r/config.functions/conftest.c:11:7: note: each undeclared identifier is reported only once for each function it appears in
   11 |  mmap(NULL,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0);
      |       ^~~~
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.functions/conftest.c: In function ‘main’:
/tmp/petsc-7m47ck2r/config.functions/conftest.c:11:7: error: ‘NULL’ undeclared (first use in this function)
   11 |  mmap(NULL,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0);
      |       ^~~~
/tmp/petsc-7m47ck2r/config.functions/conftest.c:7:1: note: ‘NULL’ is defined in header ‘<stddef.h>’; did you forget to ‘#include <stddef.h>’?
    6 | #include <fcntl.h>
  +++ |+#include <stddef.h>
    7 | 
/tmp/petsc-7m47ck2r/config.functions/conftest.c:11:7: note: each undeclared identifier is reported only once for each function it appears in
   11 |  mmap(NULL,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0);
      |       ^~~~
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/mman.h>
#include <sys/types.h>
#include <sys/stat.h>
#include <fcntl.h>

int main(void) {
int fd;
 fd=open("/tmp/file",O_RDWR);
 mmap(NULL,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0);
  return 0;
}

              Compile failed inside link

=============================================================================================
TESTING: checkMkstemp from config.functions(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/functions.py:154)
  Check for mkstemp() to avoid using tmpnam as it is often deprecated
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#define _XOPEN_SOURCE 600
#include <stdlib.h>
#include <string.h>

int main(void) {
char filename[100];
 strcpy(filename, "/tmp/fileXXXXXX");
 mkstemp(filename);
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
            Defined "HAVE_MKSTEMP" to "1"
=============================================================================================
TESTING: checkTmpnam_s from config.functions(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/functions.py:159)
  Check for tmpnam_s() to avoid using tmpnam as it is often deprecated
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.functions/conftest.c: In function ‘main’:
/tmp/petsc-7m47ck2r/config.functions/conftest.c:7:2: warning: implicit declaration of function ‘tmpnam_s’; did you mean ‘tmpnam_r’? [-Wimplicit-function-declaration]
    7 |  tmpnam_s(filename, sizeof(filename));
      |  ^~~~~~~~
      |  tmpnam_r
Possible ERROR while running compiler:exit code 0
stderr:
/tmp/petsc-7m47ck2r/config.functions/conftest.c: In function ‘main’:
/tmp/petsc-7m47ck2r/config.functions/conftest.c:7:2: warning: implicit declaration of function ‘tmpnam_s’; did you mean ‘tmpnam_r’? [-Wimplicit-function-declaration]
    7 |  tmpnam_s(filename, sizeof(filename));
      |  ^~~~~~~~
      |  tmpnam_r
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>

int main(void) {
char filename[L_tmpnam];
 tmpnam_s(filename, sizeof(filename));
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:7: undefined reference to `tmpnam_s'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.functions/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.functions/conftest.c:7: undefined reference to `tmpnam_s'
collect2: error: ld returned 1 exit status
    child config.functions took 2.912849 seconds
=============================================================================================
TESTING: configureMemorySize from config.utilities.getResidentSetSize(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py:31)
  Try to determine how to measure the memory usage
            Defined "USE_PROC_FOR_SIZE" to "1"
          Using /proc for PetscMemoryGetCurrentUsage()
    child config.utilities.getResidentSetSize took 0.001684 seconds
=============================================================================================
TESTING: configureFPTrap from config.utilities.FPTrap(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/utilities/FPTrap.py:26)
  Checking the handling of floating point traps
Checking for header: sigfpe.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <sigfpe.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: sigfpe.h: No such file or directory
    3 | #include <sigfpe.h>
      |          ^~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sigfpe.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: sigfpe.h: No such file or directory
    3 | #include <sigfpe.h>
      |          ^~~~~~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: sigfpe.h: No such file or directory
    3 | #include <sigfpe.h>
      |          ^~~~~~~~~~
compilation terminated.
Checking for header: fpxcp.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <fpxcp.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: fpxcp.h: No such file or directory
    3 | #include <fpxcp.h>
      |          ^~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <fpxcp.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: fpxcp.h: No such file or directory
    3 | #include <fpxcp.h>
      |          ^~~~~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: fpxcp.h: No such file or directory
    3 | #include <fpxcp.h>
      |          ^~~~~~~~~
compilation terminated.
Checking for header: floatingpoint.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <floatingpoint.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: floatingpoint.h: No such file or directory
    3 | #include <floatingpoint.h>
      |          ^~~~~~~~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <floatingpoint.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: floatingpoint.h: No such file or directory
    3 | #include <floatingpoint.h>
      |          ^~~~~~~~~~~~~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: floatingpoint.h: No such file or directory
    3 | #include <floatingpoint.h>
      |          ^~~~~~~~~~~~~~~~~
compilation terminated.
    child config.utilities.FPTrap took 0.073483 seconds
=============================================================================================
TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/utilities/fortranCommandLine.py:27)
  Check for the mechanism to retrieve command line arguments in Fortran
            Checking for functions [] in library [''] []
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.libraries/conftest.F90 
Successful compile:
Source:
      program main
      integer i
      character(len=80) arg
      i = command_argument_count()
      call get_command_argument(i,arg)
      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.o   -ldl 
    child config.utilities.fortranCommandLine took 0.124205 seconds
=============================================================================================
TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/utilities/featureTestMacros.py:13)
  Checks if certain feature test macros are support
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.featureTestMacros/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros/conftest.c:4:10: fatal error: sysctl.h: No such file or directory
    4 | #include <sysctl.h>
      |          ^~~~~~~~~~
compilation terminated.
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros/conftest.c:4:10: fatal error: sysctl.h: No such file or directory
    4 | #include <sysctl.h>
      |          ^~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#define _POSIX_C_SOURCE 200112L
#include <sysctl.h>

int main(void) {
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.featureTestMacros/conftest.c 
stdout:
In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33,
                 from /usr/include/stdlib.h:25,
                 from /tmp/petsc-7m47ck2r/config.utilities.featureTestMacros/conftest.c:4:
/usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
Possible ERROR while running compiler:exit code 0
stderr:
In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33,
                 from /usr/include/stdlib.h:25,
                 from /tmp/petsc-7m47ck2r/config.utilities.featureTestMacros/conftest.c:4:
/usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
Source:
#include "confdefs.h"
#include "conffix.h"
#define _BSD_SOURCE
#include<stdlib.h>

int main(void) {
  return 0;
}

            Defined "_BSD_SOURCE" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.featureTestMacros/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#define _DEFAULT_SOURCE
#include<stdlib.h>

int main(void) {
  return 0;
}

            Defined "_DEFAULT_SOURCE" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.featureTestMacros/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#define _GNU_SOURCE
#include <sched.h>

int main(void) {
cpu_set_t mset;
CPU_ZERO(&mset);
  return 0;
}

            Defined "_GNU_SOURCE" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.featureTestMacros/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#define _GNU_SOURCE
#include <stdlib.h>
#include <dlfcn.h>

int main(void) {
Dl_info info;
if (dladdr(*(void **)&exit, &info) == 0) return 1;

  return 0;
}

            Defined "_GNU_SOURCE" to "1"
    child config.utilities.featureTestMacros took 0.228912 seconds
=============================================================================================
TESTING: configureMissingUtypeTypedefs from config.utilities.missing(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/utilities/missing.py:54)
   Checks if u_short is undefined 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>

int main(void) {
u_short foo;
(void)foo;
  return 0;
}

=============================================================================================
TESTING: configureMissingFunctions from config.utilities.missing(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/utilities/missing.py:60)
  Checks for SOCKETS and getline
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdio.h>
char *lineptr;
size_t n;
FILE *stream;

int main(void) {
getline(&lineptr, &n, stream);

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -ldl 
=============================================================================================
TESTING: configureMissingSignals from config.utilities.missing(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/utilities/missing.py:80)
  Check for missing signals, and define MISSING_<signal name> if necessary
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGABRT;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGALRM;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGBUS;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGCHLD;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGCONT;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGFPE;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGHUP;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGILL;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGINT;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGKILL;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGPIPE;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGQUIT;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGSEGV;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGSTOP;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGSYS;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGTERM;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGTRAP;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGTSTP;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGURG;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGUSR1;
(void)i;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <signal.h>

int main(void) {
int i=SIGUSR2;
(void)i;
  return 0;
}

=============================================================================================
TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/utilities/missing.py:88)
  Check for missing function prototype for getdomainname()
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#if !defined(_BSD_SOURCE)
#define _BSD_SOURCE
#endif

#if !defined(_DEFAULT_SOURCE)
#define _DEFAULT_SOURCE
#endif

#if !defined(_GNU_SOURCE)
#define _GNU_SOURCE
#endif

#ifdef PETSC_HAVE_UNISTD_H
#include <unistd.h>
#endif
#ifdef PETSC_HAVE_NETDB_H
#include <netdb.h>
#endif

int main(void) {

int (*getdomainname_ptr)(char*,size_t) = getdomainname;
char test[10];
if (getdomainname_ptr(test,10)) return 1;

  return 0;
}

Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#if !defined(_BSD_SOURCE)
#define _BSD_SOURCE
#endif

#if !defined(_DEFAULT_SOURCE)
#define _DEFAULT_SOURCE
#endif

#if !defined(_GNU_SOURCE)
#define _GNU_SOURCE
#endif

#ifdef PETSC_HAVE_UNISTD_H
#include <unistd.h>
#endif
#ifdef PETSC_HAVE_NETDB_H
#include <netdb.h>
#endif

int main(void) {

int (*getdomainname_ptr)(char*,size_t) = getdomainname;
char test[10];
if (getdomainname_ptr(test,10)) return 1;

  return 0;
}

Executing: mpicxx  -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest    -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -ldl 
=============================================================================================
TESTING: configureMissingSrandPrototype from config.utilities.missing(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/utilities/missing.py:114)
  Checks for missing random number generator prototypes
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#if !defined(_BSD_SOURCE)
#define _BSD_SOURCE
#endif

#if !defined(_DEFAULT_SOURCE)
#define _DEFAULT_SOURCE
#endif

#if !defined(_GNU_SOURCE)
#define _GNU_SOURCE
#endif

#include <stdlib.h>

int main(void) {

double (*drand48_ptr)(void) = drand48;
void (*srand48_ptr)(long int) = srand48;
long int seed=10;
srand48_ptr(seed);
if (drand48_ptr() > 0.5) return 1;

  return 0;
}

Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

#if !defined(_BSD_SOURCE)
#define _BSD_SOURCE
#endif

#if !defined(_DEFAULT_SOURCE)
#define _DEFAULT_SOURCE
#endif

#if !defined(_GNU_SOURCE)
#define _GNU_SOURCE
#endif

#include <stdlib.h>

int main(void) {

double (*drand48_ptr)(void) = drand48;
void (*srand48_ptr)(long int) = srand48;
long int seed=10;
srand48_ptr(seed);
if (drand48_ptr() > 0.5) return 1;

  return 0;
}

Executing: mpicxx  -o /tmp/petsc-7m47ck2r/config.utilities.missing/conftest    -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-7m47ck2r/config.utilities.missing/conftest.o -ldl 
=============================================================================================
TESTING: configureMissingShmget from config.utilities.missing(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/utilities/missing.py:137)
Checking for functions [shmget]
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.functions/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.functions/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

/* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */
#include <assert.h>
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C" {
#endif

/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char shmget(void);

#ifdef __cplusplus
}
#endif

int main(void) {

#if defined (__stub_shmget) || defined (__stub___shmget)
shmget_will_always_fail_with_ENOSYS();
#else
shmget();
#endif

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.functions/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.functions/conftest.o -ldl 
              Defined "HAVE_SHMGET" to "1"
            Defined "HAVE_SHMGET" to "1"
    child config.utilities.missing took 1.550444 seconds
=============================================================================================
TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/u/pa/bg/ntilton/petsc/config/PETSc/options/sharedLibraries.py:33)
  if user specified out-dated 'with-shared' or 'with-dynamic' - flag an error
=============================================================================================
TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(/u/pa/bg/ntilton/petsc/config/PETSc/options/sharedLibraries.py:48)
  Checks whether shared libraries should be used, for which you must
      - Specify --with-shared-libraries
      - Have found a working shared linker
    Defines PETSC_USE_SHARED_LIBRARIES if they are used
            Defined make rule "shared_arch" with dependencies "shared_linux" and code []
            Defined make macro "SONAME_FUNCTION" to "$(1).$(SL_LINKER_SUFFIX).$(2)"
            Defined make macro "SL_LINKER_FUNCTION" to " -shared  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))"
Executing: mpicc -v
stdout:
Using built-in specs.
COLLECT_GCC=/usr/bin/gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.4.0-1ubuntu1~20.04.2' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-9QDOt0/gcc-9-9.4.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.4.0 (Ubuntu 9.4.0-1ubuntu1~20.04.2)
            Defined make macro "BUILDSHAREDLIB" to "yes"
            Defined "USE_SHARED_LIBRARIES" to "1"
=============================================================================================
TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(/u/pa/bg/ntilton/petsc/config/PETSc/options/sharedLibraries.py:92)
  Checks whether dynamic loading is available (with dlfcn.h and libdl)
            Defined "HAVE_DYNAMIC_LIBRARIES" to "1"
=============================================================================================
TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(/u/pa/bg/ntilton/petsc/config/PETSc/options/sharedLibraries.py:98)
  
    Defines PETSC_SERIALIZE_FUNCTIONS if they are used
    Requires shared libraries
=============================================================================================
TESTING: checkSymbolResolution from PETSc.options.sharedLibraries(/u/pa/bg/ntilton/petsc/config/PETSc/options/sharedLibraries.py:107)
  Checks that dladdr() works
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#define _GNU_SOURCE
#include<stdlib.h>
#include <dlfcn.h>

int main(void) {
Dl_info info;
if (dladdr(*(void **)&exit, &info) == 0) return 1;

  return 0;
}

            Defined "HAVE_DLADDR" to "1"
Checking for header: cxxabi.h
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <cxxabi.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.headers  /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Possible ERROR while running preprocessor: exit code 1
stdout:
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 31 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 32 "<command-line>" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conftest.c"
# 1 "/tmp/petsc-7m47ck2r/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
# 1 "/tmp/petsc-7m47ck2r/config.headers/conffix.h" 1
# 3 "/tmp/petsc-7m47ck2r/config.headers/conftest.c" 2
stderr:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: cxxabi.h: No such file or directory
    3 | #include <cxxabi.h>
      |          ^~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <cxxabi.h>

Preprocess output before filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: cxxabi.h: No such file or directory
    3 | #include <cxxabi.h>
      |          ^~~~~~~~~~
compilation terminated.
Preprocess output after filtering:
/tmp/petsc-7m47ck2r/config.headers/conftest.c:3:10: fatal error: cxxabi.h: No such file or directory
    3 | #include <cxxabi.h>
      |          ^~~~~~~~~~
compilation terminated.
    child PETSc.options.sharedLibraries took 0.098195 seconds
=============================================================================================
TESTING: configureScalarType from PETSc.options.scalarTypes(/u/pa/bg/ntilton/petsc/config/PETSc/options/scalarTypes.py:42)
  Choose between real and complex numbers
          Scalar type is real
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.options.scalarTypes/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <math.h>

int main(void) {
double b = 2.0; int a = isnormal(b);(void)a;
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/PETSc.options.scalarTypes/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/PETSc.options.scalarTypes/conftest.o -ldl 
            Defined "HAVE_ISNORMAL" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.options.scalarTypes/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <math.h>

int main(void) {
double b = 2.0; int a = isnan(b);(void)a;
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/PETSc.options.scalarTypes/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/PETSc.options.scalarTypes/conftest.o -ldl 
            Defined "HAVE_ISNAN" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.options.scalarTypes/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <math.h>

int main(void) {
double b = 2.0; int a = isinf(b);(void)a;
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/PETSc.options.scalarTypes/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/PETSc.options.scalarTypes/conftest.o -ldl 
            Defined "HAVE_ISINF" to "1"
=============================================================================================
TESTING: configurePrecision from PETSc.options.scalarTypes(/u/pa/bg/ntilton/petsc/config/PETSc/options/scalarTypes.py:88)
  Set the default real number precision for PETSc objects
Checking C compiler works with __float128
            Checking for functions [logq] in library ['quadmath'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <quadmath.h>
static void _check_logq(void) { __float128 f = 0.0; logq(f); }

int main(void) {
_check_logq();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lquadmath -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <quadmath.h>
static void _check_logq(void) { __float128 f = 0.0; logq(f); }
void dummy(void) {_check_logq();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -lquadmath -ldl 
              Defined "HAVE_LIBQUADMATH" to "1"
C compiler works with quadmath library
Checking Fortran compiler works with quadmath library
            Checking for functions [     ] in library ['quadmath'] []
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.libraries/conftest.F90 
Successful compile:
Source:
      program main
      real*16 s,w; w = 2.0; s = cos(w)
      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lquadmath -ldl 
Fortran compiler works with quadmath library
Executing: mpicxx --help | head -n 20 
stdout:
Usage: g++ [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
Detected GNU compiler
Checking C++ compiler works with quadmath library
            Checking for functions [logq] in library ['quadmath'] []
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/config.libraries  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  -Wno-error /tmp/petsc-7m47ck2r/config.libraries/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */

#ifdef __cplusplus
extern "C" {
#endif
#include <quadmath.h>
static void _check_logq(void) { __float128 f = FLT128_EPSILON; logq(f); }
#ifdef __cplusplus
}
#endif

int main(void) {
_check_logq();
  return 0;
}

Executing: mpicxx  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lquadmath -ldl 
C++ compiler works with quadmath library
              Checking for functions [logq] in library ['quadmath'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <quadmath.h>
static void _check_logq(void) { __float128 f = 0.0; logq(f); }

int main(void) {
_check_logq();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lquadmath -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <quadmath.h>
static void _check_logq(void) { __float128 f = 0.0; logq(f); }
void dummy(void) {_check_logq();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -lquadmath -ldl 
                Defined "HAVE_LIBQUADMATH" to "1"
            Adding ['quadmath'] to LIBS
            Defined "HAVE_REAL___FLOAT128" to "1"
Checking C compiler works with __fp16
            Checking for functions [] in library [''] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:8: error: unknown type name ‘__fp16’
    4 | static __fp16 ret___fp16(__fp16 f) { return f; }
      |        ^~~~~~
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:26: error: unknown type name ‘__fp16’
    4 | static __fp16 ret___fp16(__fp16 f) { return f; }
      |                          ^~~~~~
/tmp/petsc-7m47ck2r/config.libraries/conftest.c: In function ‘_check_’:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5:29: error: unknown type name ‘__fp16’
    5 | static void _check_(void) { __fp16 f = 1.0, g; g = ret___fp16(f); (void)g; }
      |                             ^~~~~~
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5:52: warning: implicit declaration of function ‘ret___fp16’ [-Wimplicit-function-declaration]
    5 | static void _check_(void) { __fp16 f = 1.0, g; g = ret___fp16(f); (void)g; }
      |                                                    ^~~~~~~~~~
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:8: error: unknown type name ‘__fp16’
    4 | static __fp16 ret___fp16(__fp16 f) { return f; }
      |        ^~~~~~
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:26: error: unknown type name ‘__fp16’
    4 | static __fp16 ret___fp16(__fp16 f) { return f; }
      |                          ^~~~~~
/tmp/petsc-7m47ck2r/config.libraries/conftest.c: In function ‘_check_’:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5:29: error: unknown type name ‘__fp16’
    5 | static void _check_(void) { __fp16 f = 1.0, g; g = ret___fp16(f); (void)g; }
      |                             ^~~~~~
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5:52: warning: implicit declaration of function ‘ret___fp16’ [-Wimplicit-function-declaration]
    5 | static void _check_(void) { __fp16 f = 1.0, g; g = ret___fp16(f); (void)g; }
      |                                                    ^~~~~~~~~~
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
static __fp16 ret___fp16(__fp16 f) { return f; }
static void _check_(void) { __fp16 f = 1.0, g; g = ret___fp16(f); (void)g; }

int main(void) {
_check_();
  return 0;
}

                Compile failed inside link

            Defined "USE_REAL_DOUBLE" to "1"
            Defined make macro "PETSC_SCALAR_SIZE" to "64"
          Precision is double
=============================================================================================
TESTING: checkNoFiniteMathOnly from PETSc.options.scalarTypes(/u/pa/bg/ntilton/petsc/config/PETSc/options/scalarTypes.py:83)
  Check if attribute for ignoring finite-math-only optimization is valid, for isnan() and isinf()
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.options.scalarTypes/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
__attribute__((optimize ("no-finite-math-only"))) int foo(void);
  return 0;
}

            Defined "HAVE_NO_FINITE_MATH_ONLY" to "1"
    child PETSc.options.scalarTypes took 1.242486 seconds
=============================================================================================
TESTING: configureMkdir from config.programs(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/programs.py:23)
  Make sure we can have mkdir automatically make intermediate directories
    Checking for program /usr/local/sbin/mkdir...not found
    Checking for program /usr/local/bin/mkdir...not found
    Checking for program /usr/sbin/mkdir...not found
    Checking for program /usr/bin/mkdir...found
Executing: /usr/bin/mkdir -p .conftest/tmp
          Adding -p flag to /usr/bin/mkdir -p to automatically create directories
            Defined make macro "MKDIR" to "/usr/bin/mkdir -p"
=============================================================================================
TESTING: configureAutoreconf from config.programs(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/programs.py:45)
  Check for autoreconf
    Checking for program /usr/local/sbin/autoreconf...not found
    Checking for program /usr/local/bin/autoreconf...not found
    Checking for program /usr/sbin/autoreconf...not found
    Checking for program /usr/bin/autoreconf...found
Executing: ['/usr/bin/autoreconf']
          autoreconf test successful!
    Checking for program /usr/local/sbin/libtoolize...not found
    Checking for program /usr/local/bin/libtoolize...not found
    Checking for program /usr/sbin/libtoolize...not found
    Checking for program /usr/bin/libtoolize...found
=============================================================================================
TESTING: configurePrograms from config.programs(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/programs.py:74)
  Check for the programs needed to build and run PETSc
    Checking for program /usr/local/sbin/bash...not found
    Checking for program /usr/local/bin/bash...not found
    Checking for program /usr/sbin/bash...not found
    Checking for program /usr/bin/bash...found
              Defined make macro "SHELL" to "/usr/bin/bash"
    Checking for program /usr/local/sbin/sed...not found
    Checking for program /usr/local/bin/sed...not found
    Checking for program /usr/sbin/sed...not found
    Checking for program /usr/bin/sed...found
              Defined make macro "SED" to "/usr/bin/sed"
Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-7m47ck2r/config.programs/sed1"
          Adding SEDINPLACE cmd: /usr/bin/sed -i
            Defined make macro "SEDINPLACE" to "/usr/bin/sed -i"
    Checking for program /usr/local/sbin/mv...not found
    Checking for program /usr/local/bin/mv...not found
    Checking for program /usr/sbin/mv...not found
    Checking for program /usr/bin/mv...found
              Defined make macro "MV" to "/usr/bin/mv"
    Checking for program /usr/local/sbin/cp...not found
    Checking for program /usr/local/bin/cp...not found
    Checking for program /usr/sbin/cp...not found
    Checking for program /usr/bin/cp...found
              Defined make macro "CP" to "/usr/bin/cp"
    Checking for program /usr/local/sbin/grep...not found
    Checking for program /usr/local/bin/grep...not found
    Checking for program /usr/sbin/grep...not found
    Checking for program /usr/bin/grep...found
              Defined make macro "GREP" to "/usr/bin/grep"
    Checking for program /usr/local/sbin/rm...not found
    Checking for program /usr/local/bin/rm...not found
    Checking for program /usr/sbin/rm...not found
    Checking for program /usr/bin/rm...found
              Defined make macro "RM" to "/usr/bin/rm -f"
    Checking for program /usr/local/sbin/diff...not found
    Checking for program /usr/local/bin/diff...not found
    Checking for program /usr/sbin/diff...not found
    Checking for program /usr/bin/diff...found
Executing: "/usr/bin/diff" -w "/tmp/petsc-7m47ck2r/config.programs/diff1" "/tmp/petsc-7m47ck2r/config.programs/diff2"
            Defined make macro "DIFF" to "/usr/bin/diff -w"
    Checking for program /usr/ucb/ps...not found
    Checking for program /usr/usb/ps...not found
    Checking for program /u/pa/bg/ntilton/petsc/lib/petsc/bin/win32fe/ps...not found
  Unable to find programs: ['ps'] in listing of the specific search path: ['/usr/ucb', '/usr/usb']
      Warning accessing /usr/ucb gives errors: [Errno 2] No such file or directory: '/usr/ucb'
      Warning accessing /usr/usb gives errors: [Errno 2] No such file or directory: '/usr/usb'
            Defined make macro "PYTHON" to "/usr/bin/python3"
    Checking for program /usr/local/sbin/m4...not found
    Checking for program /usr/local/bin/m4...not found
    Checking for program /usr/sbin/m4...not found
    Checking for program /usr/bin/m4...found
              Defined make macro "M4" to "/usr/bin/m4"
    child config.programs took 1.933604 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.make(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.make(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
=============================================================================================
TESTING: configureMake from config.packages.make(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/make.py:98)
  Check Guesses for GNU make
Executing: gmake --version
stdout: /bin/sh: 1: gmake: not found
GNUMake check failed: Could not execute "['gmake --version']":
/bin/sh: 1: gmake: not found

Executing: make --version
stdout:
GNU Make 4.2.1
Built for x86_64-pc-linux-gnu
Copyright (C) 1988-2016 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
    Checking for program /usr/local/sbin/make...not found
    Checking for program /usr/local/bin/make...not found
    Checking for program /usr/sbin/make...not found
    Checking for program /usr/bin/make...found
              Defined make macro "MAKE" to "/usr/bin/make"
    Checking for program /usr/local/sbin/make...not found
    Checking for program /usr/local/bin/make...not found
    Checking for program /usr/sbin/make...not found
    Checking for program /usr/bin/make...found
              Defined make macro "MAKE_USER" to "make"
=============================================================================================
TESTING: setupGNUMake from config.packages.make(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/make.py:152)
  Setup other GNU make stuff
            Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code []
            Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code []
            Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code []
            Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF}
            Defined make macro "OMAKE_PRINTDIR" to "/usr/bin/make --print-directory"
            Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory"
            Defined "OMAKE" to ""/usr/bin/make --no-print-directory""
            Defined make macro "MAKE_PAR_OUT_FLG" to "--output-sync=recurse"
=============================================================================================
TESTING: configureMakeNP from config.packages.make(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/make.py:200)
  check no of cores on the build machine [perhaps to do make '-j ncores']
          module multiprocessing found 112 cores: using make_np = 54
            Defined make macro "MAKE_NP" to "54"
            Defined make macro "MAKE_TEST_NP" to "44"
            Defined make macro "MAKE_LOAD" to "148.8"
            Defined make macro "NPMAX" to "112"
    child config.packages.make took 0.020935 seconds
=============================================================================================
TESTING: locateBison from config.packages.bison(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/bison.py:31)
Looking for default Bison executable
    Checking for program /usr/local/sbin/bison...not found
    Checking for program /usr/local/bin/bison...not found
    Checking for program /usr/sbin/bison...not found
    Checking for program /usr/bin/bison...found
              Defined make macro "BISON" to "/usr/bin/bison"
Executing: /usr/bin/bison --version
stdout:
bison (GNU Bison) 3.5.1
Written by Robert Corbett and Richard Stallman.
Copyright (C) 2020 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
    child config.packages.bison took 0.007020 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.sycl(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.sycl(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.sycl took 0.001520 seconds
        Defined "PYTHON_EXE" to ""/usr/bin/python3""
        Defined make macro "PYTHON_EXE" to ""/usr/bin/python3""
Executing: ['/usr/bin/python3', '-c', 'import sysconfig;print(sysconfig.get_python_version())']
stdout: 3.8
Executing: ['/usr/bin/python3', '-c', 'import setuptools;print(setuptools.__version__)']
stdout: 45.2.0
Executing: ['/usr/bin/python3', '-c', 'import cython;print(cython.__version__)']
stdout: 0.29.14
Executing: /usr/bin/python3 -c "import numpy"
    child config.packages.python took 0.342188 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.X(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: checkDependencies from config.packages.X(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1008)
  Loop over declared dependencies of package and error if any are missing
=============================================================================================
TESTING: configureLibrary from config.packages.X(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1034)
  Find an installation and check if it can work with PETSc
==================================================================================
          Checking for a functional X
          Checking for library in Compiler specific search X: []
=============================================================================================
TESTING: check from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:186)
  Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
       - libDir may be a list of directories
       - libName may be a list of library names
              Checking for functions [XSetWMName] in library [] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char XSetWMName(void);
static void _check_XSetWMName(void) { XSetWMName(); }

int main(void) {
_check_XSetWMName();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o -lquadmath -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_XSetWMName':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `XSetWMName'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_XSetWMName':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `XSetWMName'
collect2: error: ld returned 1 exit status
          Checking for library in Compiler specific search X: ['libX11.a']
=============================================================================================
TESTING: check from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:186)
  Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
       - libDir may be a list of directories
       - libName may be a list of library names
              Checking for functions [XSetWMName] in library ['libX11.a'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char XSetWMName(void);
static void _check_XSetWMName(void) { XSetWMName(); }

int main(void) {
_check_XSetWMName();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lX11 -lquadmath -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char XSetWMName(void);
static void _check_XSetWMName(void) { XSetWMName(); }
void dummy(void) {_check_XSetWMName();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -lX11 -lquadmath -ldl 
                Defined "HAVE_LIBX11" to "1"
          Checking for headers ['X11/Xlib.h'] in Compiler specific search X: ['/usr/lib/x86_64-linux-gnu/openmpi/include', '/usr/lib/x86_64-linux-gnu/openmpi/lib']
=============================================================================================
TESTING: checkInclude from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:89)
  Checks if a particular include file can be found along particular include paths
Checking for header files ['X11/Xlib.h'] in ['/usr/lib/x86_64-linux-gnu/openmpi/include', '/usr/lib/x86_64-linux-gnu/openmpi/lib']
                Checking include with compiler flags var CPPFLAGS ['/usr/lib/x86_64-linux-gnu/openmpi/include', '/usr/lib/x86_64-linux-gnu/openmpi/lib']
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <X11/Xlib.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.headers  -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/lib /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
Found header files ['X11/Xlib.h'] in ['/usr/lib/x86_64-linux-gnu/openmpi/include', '/usr/lib/x86_64-linux-gnu/openmpi/lib']
=============================================================================================
TESTING: checkVersion from config.packages.X(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1191)
  Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version
=============================================================================================
TESTING: checkSharedLibrary from config.packages.X(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1104)
  By default we don't care about checking if the library is shared
    child config.packages.X took 0.405600 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.hwloc(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.hwloc(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.hwloc took 0.002579 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.hip(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.hip(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.hip took 0.001405 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.thrust(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.thrust(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.thrust took 0.001610 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.cuda(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.cuda(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
=============================================================================================
TESTING: checkKnownBadCUDAHostCompilerCombo from config.packages.cuda(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/cuda.py:483)
  
    Check for nvcc + host compiler combinations that are unable to compile or have some other known
    defect and prints a warning to the user. Has no other effect.

    For example:
    1. CUDA 11.5 + gcc 11.3.0 produces

    /usr/include/c++/11/bits/std_function.h:435:145: error: parameter packs not expanded with '...':
  435 |         function(_Functor&& __f)
      |         ^

    
    child config.packages.cuda took 0.001631 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.OpenMPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.OpenMPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.OpenMPI took 0.001279 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.MPICH(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.MPICH(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.MPICH took 0.001217 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: checkDependencies from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1008)
  Loop over declared dependencies of package and error if any are missing
=============================================================================================
TESTING: configureLibrary from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/MPI.py:937)
  Calls the regular package configureLibrary and then does an additional test needed by MPI
==================================================================================
            Checking for a functional MPI
            Checking for library in Compiler specific search MPI: []
=============================================================================================
TESTING: check from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:186)
  Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
       - libDir may be a list of directories
       - libName may be a list of library names
                Checking for functions [MPI_Init MPI_Comm_create] in library [] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char MPI_Init(void);
static void _check_MPI_Init(void) { MPI_Init(); }
char MPI_Comm_create(void);
static void _check_MPI_Comm_create(void) { MPI_Comm_create(); }

int main(void) {
_check_MPI_Init();
_check_MPI_Comm_create();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o -lquadmath -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char MPI_Init(void);
static void _check_MPI_Init(void) { MPI_Init(); }
char MPI_Comm_create(void);
static void _check_MPI_Comm_create(void) { MPI_Comm_create(); }
void dummy(void) {_check_MPI_Init();
_check_MPI_Comm_create();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o -lquadmath -ldl 
            Checking for headers ['mpi.h'] in Compiler specific search MPI: ['/usr/lib/x86_64-linux-gnu/openmpi/include', '/usr/lib/x86_64-linux-gnu/openmpi/lib']
=============================================================================================
TESTING: checkInclude from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:89)
  Checks if a particular include file can be found along particular include paths
Checking for header files ['mpi.h'] in ['/usr/lib/x86_64-linux-gnu/openmpi/include', '/usr/lib/x86_64-linux-gnu/openmpi/lib']
                  Checking include with compiler flags var CPPFLAGS ['/usr/lib/x86_64-linux-gnu/openmpi/include', '/usr/lib/x86_64-linux-gnu/openmpi/lib']
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.headers  -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/lib /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
Found header files ['mpi.h'] in ['/usr/lib/x86_64-linux-gnu/openmpi/include', '/usr/lib/x86_64-linux-gnu/openmpi/lib']
            Defined "HAVE_MPI_F90MODULE_VISIBILITY" to "1"
=============================================================================================
TESTING: checkMPIDistro from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/MPI.py:732)
  Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h
       Used for consistency checking of MPI installation at compile time
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:4:25: error: ‘I_MPI_VERSION’ undeclared here (not in a function); did you mean ‘MPI_VERSION’?
    4 | const char *mpich_ver = I_MPI_VERSION;
      |                         ^~~~~~~~~~~~~
      |                         MPI_VERSION
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:4:25: error: ‘I_MPI_VERSION’ undeclared here (not in a function); did you mean ‘MPI_VERSION’?
    4 | const char *mpich_ver = I_MPI_VERSION;
      |                         ^~~~~~~~~~~~~
      |                         MPI_VERSION
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
const char *mpich_ver = I_MPI_VERSION;

int main(void) {
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:4:17: error: ‘MPICH_NUMVERSION’ undeclared here (not in a function); did you mean ‘MPI_SUBVERSION’?
    4 | int mpich_ver = MPICH_NUMVERSION;
      |                 ^~~~~~~~~~~~~~~~
      |                 MPI_SUBVERSION
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:4:17: error: ‘MPICH_NUMVERSION’ undeclared here (not in a function); did you mean ‘MPI_SUBVERSION’?
    4 | int mpich_ver = MPICH_NUMVERSION;
      |                 ^~~~~~~~~~~~~~~~
      |                 MPI_SUBVERSION
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int mpich_ver = MPICH_NUMVERSION;

int main(void) {
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:4:17: error: ‘I_MPI_NUMVERSION’ undeclared here (not in a function); did you mean ‘MPI_SUBVERSION’?
    4 | int mpich_ver = I_MPI_NUMVERSION;
      |                 ^~~~~~~~~~~~~~~~
      |                 MPI_SUBVERSION
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:4:17: error: ‘I_MPI_NUMVERSION’ undeclared here (not in a function); did you mean ‘MPI_SUBVERSION’?
    4 | int mpich_ver = I_MPI_NUMVERSION;
      |                 ^~~~~~~~~~~~~~~~
      |                 MPI_SUBVERSION
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int mpich_ver = I_MPI_NUMVERSION;

int main(void) {
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:4:17: error: ‘MVAPICH2_NUMVERSION’ undeclared here (not in a function); did you mean ‘MPI_SUBVERSION’?
    4 | int mpich_ver = MVAPICH2_NUMVERSION;
      |                 ^~~~~~~~~~~~~~~~~~~
      |                 MPI_SUBVERSION
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:4:17: error: ‘MVAPICH2_NUMVERSION’ undeclared here (not in a function); did you mean ‘MPI_SUBVERSION’?
    4 | int mpich_ver = MVAPICH2_NUMVERSION;
      |                 ^~~~~~~~~~~~~~~~~~~
      |                 MPI_SUBVERSION
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int mpich_ver = MVAPICH2_NUMVERSION;

int main(void) {
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:4:1: error: unknown type name ‘MPI_NEC_Function’; did you mean ‘MPI_Copy_function’?
    4 | MPI_NEC_Function f = MPI_NEC_FUNCTION_NULL;
      | ^~~~~~~~~~~~~~~~
      | MPI_Copy_function
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:4:22: error: ‘MPI_NEC_FUNCTION_NULL’ undeclared here (not in a function)
    4 | MPI_NEC_Function f = MPI_NEC_FUNCTION_NULL;
      |                      ^~~~~~~~~~~~~~~~~~~~~
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:4:1: error: unknown type name ‘MPI_NEC_Function’; did you mean ‘MPI_Copy_function’?
    4 | MPI_NEC_Function f = MPI_NEC_FUNCTION_NULL;
      | ^~~~~~~~~~~~~~~~
      | MPI_Copy_function
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:4:22: error: ‘MPI_NEC_FUNCTION_NULL’ undeclared here (not in a function)
    4 | MPI_NEC_Function f = MPI_NEC_FUNCTION_NULL;
      |                      ^~~~~~~~~~~~~~~~~~~~~
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
MPI_NEC_Function f = MPI_NEC_FUNCTION_NULL;

int main(void) {
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int ompi_major = OMPI_MAJOR_VERSION;
int ompi_minor = OMPI_MINOR_VERSION;
int ompi_release = OMPI_RELEASE_VERSION;

int main(void) {
  return 0;
}

Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
int ompi_major = OMPI_MAJOR_VERSION;
int ompi_minor = OMPI_MINOR_VERSION;
int ompi_release = OMPI_RELEASE_VERSION;

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.packages.MPI   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
                Defined "HAVE_OPENMPI" to "1"
=============================================================================================
TESTING: configureMPI2 from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/MPI.py:395)
  Check for functions added to the interface in MPI-2
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {

      int a,b,c,d,flag,sendbuf[1]={1},recvbuf[1]={2};
      MPI_Datatype newtype;
      if (MPI_Allreduce(MPI_IN_PLACE,0,1,MPI_INT,MPI_SUM,MPI_COMM_SELF)) return 0;
      if (MPI_Finalized(&flag)) return 0;
      if (MPI_Type_dup(MPI_INT,&newtype)) return 0;
      if (MPI_Exscan(sendbuf,recvbuf,1,MPI_INT,MPI_SUM,MPI_COMM_WORLD)) return 0;
      if (MPI_Reduce_scatter(sendbuf,recvbuf,sendbuf,MPI_INT,MPI_SUM,MPI_COMM_WORLD)) return 0;
      if (MPI_Type_get_envelope(MPI_INT,&a,&b,&c,&d)) return 0;
    
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {
int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={MPI_INT,MPI_DOUBLE}; MPI_Datatype *newtype = 0;
                                              if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)) { }

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {
MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)) { }

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {
if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)) { }

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {
if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM)) { }

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
                Defined "HAVE_MPI_REDUCE_LOCAL" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {
char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)) { }

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
                Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {
int base[100]; MPI_Win win = 0; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)) { }
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
                Defined "HAVE_MPI_WIN_CREATE" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {
int ptr[1] = {0}; MPI_Win win = 0; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)) { }
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
                Defined "HAVE_MPI_ONE_SIDED" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {
int provided; if (MPI_Init_thread(0,0,MPI_THREAD_FUNNELED,&provided)) return 0;
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
                Defined "HAVE_MPI_INIT_THREAD" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {

     int sendbuf[2] = {1,2};
     int recvbuf[1];
     if (MPI_Reduce_scatter_block(sendbuf,recvbuf,1,MPI_INT,MPI_SUM,MPI_COMM_WORLD)) return 0;
    
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
                Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1"
=============================================================================================
TESTING: configureMPI3 from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/MPI.py:454)
  Check for functions added to the interface in MPI-3
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {
MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win;
                       if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)) { }
                       if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)) { }
                       if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)) { }

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
                Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {
MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win;
                       if (MPI_Win_allocate(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)) { }
                       if (MPI_Win_attach(win,baseptr,size)) { }
                       if (MPI_Win_create_dynamic(MPI_INFO_NULL,MPI_COMM_WORLD,&win)) { }

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
                Defined "HAVE_MPI_FEATURE_DYNAMIC_WINDOW" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
 MPI_Count i = 0;

int main(void) {
  return 0;
}

                Defined "HAVE_MPI_COUNT" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {

                        int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req;
                        if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)) return 0;
                        if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)) return 0;
                        if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)) return 0;
                        if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)) return 0;
                        if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)) return 0;
                        if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)) return 0;
                        if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)) return 0;
                        if (MPI_Iallreduce(&send,&recv,1,MPI_INT,MPI_SUM,MPI_COMM_WORLD,&req)) return 0;
                        if (MPI_Ibarrier(MPI_COMM_WORLD,&req)) return 0;
                      
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
                Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {
MPI_Comm distcomm; 
                       MPI_Request req; 
                       if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)) { }
                       if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)) { }
                       if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)) { }

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
                Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:7:3: error: #error This Open MPI is not CUDA-aware
    7 |  #error This Open MPI is not CUDA-aware
      |   ^~~~~
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:7:3: error: #error This Open MPI is not CUDA-aware
    7 |  #error This Open MPI is not CUDA-aware
      |   ^~~~~
Source:
#include "confdefs.h"
#include "conffix.h"
#include<mpi.h>
 #include <mpi-ext.h>
 #if defined(MPIX_CUDA_AWARE_SUPPORT) && MPIX_CUDA_AWARE_SUPPORT
 #else
 #error This Open MPI is not CUDA-aware
 #endif

int main(void) {
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {
int ptr[1] = {0}; MPI_Win win = 0; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)) { }

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
                Defined "HAVE_MPI_GET_ACCUMULATE" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {
int ptr[1]; MPI_Win win = 0; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)) { }

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
                Defined "HAVE_MPI_RGET" to "1"
=============================================================================================
TESTING: configureMPI4 from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/MPI.py:525)
  Check for functions added to the interface in MPI-4
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c: In function ‘main’:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:14:11: warning: implicit declaration of function ‘MPI_Send_c’; did you mean ‘MPI_Send’? [-Wimplicit-function-declaration]
   14 |       if (MPI_Send_c(buf,count,MPI_INT,dest,tag,MPI_COMM_WORLD)) return 1;
      |           ^~~~~~~~~~
      |           MPI_Send
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:15:11: warning: implicit declaration of function ‘MPI_Send_init_c’; did you mean ‘MPI_Send_init’? [-Wimplicit-function-declaration]
   15 |       if (MPI_Send_init_c(buf,count,MPI_INT,dest,tag,MPI_COMM_WORLD,&req)) return 1;
      |           ^~~~~~~~~~~~~~~
      |           MPI_Send_init
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:16:11: warning: implicit declaration of function ‘MPI_Isend_c’; did you mean ‘MPI_Isend’? [-Wimplicit-function-declaration]
   16 |       if (MPI_Isend_c(buf,count,MPI_INT,dest,tag,MPI_COMM_WORLD,&req)) return 1;
      |           ^~~~~~~~~~~
      |           MPI_Isend
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:17:11: warning: implicit declaration of function ‘MPI_Recv_c’; did you mean ‘MPI_Recv’? [-Wimplicit-function-declaration]
   17 |       if (MPI_Recv_c(buf,count,MPI_INT,source,tag,MPI_COMM_WORLD,&stat)) return 1;
      |           ^~~~~~~~~~
      |           MPI_Recv
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:18:11: warning: implicit declaration of function ‘MPI_Recv_init_c’; did you mean ‘MPI_Recv_init’? [-Wimplicit-function-declaration]
   18 |       if (MPI_Recv_init_c(buf,count,MPI_INT,source,tag,MPI_COMM_WORLD,&req)) return 1;
      |           ^~~~~~~~~~~~~~~
      |           MPI_Recv_init
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:19:11: warning: implicit declaration of function ‘MPI_Irecv_c’; did you mean ‘MPI_Irecv’? [-Wimplicit-function-declaration]
   19 |       if (MPI_Irecv_c(buf,count,MPI_INT,source,tag,MPI_COMM_WORLD,&req)) return 1;
      |           ^~~~~~~~~~~
      |           MPI_Irecv
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:20:11: warning: implicit declaration of function ‘MPI_Neighbor_alltoallv_c’; did you mean ‘MPI_Neighbor_alltoallv’? [-Wimplicit-function-declaration]
   20 |       if (MPI_Neighbor_alltoallv_c(0,0,0,MPI_INT,0,0,0,MPI_INT,MPI_COMM_WORLD)) return 1;
      |           ^~~~~~~~~~~~~~~~~~~~~~~~
      |           MPI_Neighbor_alltoallv
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:21:11: warning: implicit declaration of function ‘MPI_Ineighbor_alltoallv_c’; did you mean ‘MPI_Ineighbor_alltoallv’? [-Wimplicit-function-declaration]
   21 |       if (MPI_Ineighbor_alltoallv_c(0,0,0,MPI_INT,0,0,0,MPI_INT,MPI_COMM_WORLD,&req)) return 1;
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~
      |           MPI_Ineighbor_alltoallv
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:22:11: warning: implicit declaration of function ‘MPI_Type_get_envelope_c’; did you mean ‘MPI_Type_get_envelope’? [-Wimplicit-function-declaration]
   22 |       if (MPI_Type_get_envelope_c(MPI_INT,&nints,&naddrs,&ncounts,&ntypes,&combiner)) return 1;
      |           ^~~~~~~~~~~~~~~~~~~~~~~
      |           MPI_Type_get_envelope
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:23:11: warning: implicit declaration of function ‘MPI_Type_get_contents_c’; did you mean ‘MPI_Type_get_contents’? [-Wimplicit-function-declaration]
   23 |       if (MPI_Type_get_contents_c(MPI_INT,nints,naddrs,ncounts,ntypes,ints,addrs,counts,types)) return 1;
      |           ^~~~~~~~~~~~~~~~~~~~~~~
      |           MPI_Type_get_contents
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:24:9: warning: implicit declaration of function ‘MPI_Reduce_local_c’; did you mean ‘MPI_Reduce_local’? [-Wimplicit-function-declaration]
   24 |     if (MPI_Reduce_local_c(0,0,0,MPI_INT,MPI_SUM)) return 1;
      |         ^~~~~~~~~~~~~~~~~~
      |         MPI_Reduce_local
Possible ERROR while running compiler:exit code 0
stderr:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c: In function ‘main’:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:14:11: warning: implicit declaration of function ‘MPI_Send_c’; did you mean ‘MPI_Send’? [-Wimplicit-function-declaration]
   14 |       if (MPI_Send_c(buf,count,MPI_INT,dest,tag,MPI_COMM_WORLD)) return 1;
      |           ^~~~~~~~~~
      |           MPI_Send
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:15:11: warning: implicit declaration of function ‘MPI_Send_init_c’; did you mean ‘MPI_Send_init’? [-Wimplicit-function-declaration]
   15 |       if (MPI_Send_init_c(buf,count,MPI_INT,dest,tag,MPI_COMM_WORLD,&req)) return 1;
      |           ^~~~~~~~~~~~~~~
      |           MPI_Send_init
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:16:11: warning: implicit declaration of function ‘MPI_Isend_c’; did you mean ‘MPI_Isend’? [-Wimplicit-function-declaration]
   16 |       if (MPI_Isend_c(buf,count,MPI_INT,dest,tag,MPI_COMM_WORLD,&req)) return 1;
      |           ^~~~~~~~~~~
      |           MPI_Isend
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:17:11: warning: implicit declaration of function ‘MPI_Recv_c’; did you mean ‘MPI_Recv’? [-Wimplicit-function-declaration]
   17 |       if (MPI_Recv_c(buf,count,MPI_INT,source,tag,MPI_COMM_WORLD,&stat)) return 1;
      |           ^~~~~~~~~~
      |           MPI_Recv
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:18:11: warning: implicit declaration of function ‘MPI_Recv_init_c’; did you mean ‘MPI_Recv_init’? [-Wimplicit-function-declaration]
   18 |       if (MPI_Recv_init_c(buf,count,MPI_INT,source,tag,MPI_COMM_WORLD,&req)) return 1;
      |           ^~~~~~~~~~~~~~~
      |           MPI_Recv_init
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:19:11: warning: implicit declaration of function ‘MPI_Irecv_c’; did you mean ‘MPI_Irecv’? [-Wimplicit-function-declaration]
   19 |       if (MPI_Irecv_c(buf,count,MPI_INT,source,tag,MPI_COMM_WORLD,&req)) return 1;
      |           ^~~~~~~~~~~
      |           MPI_Irecv
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:20:11: warning: implicit declaration of function ‘MPI_Neighbor_alltoallv_c’; did you mean ‘MPI_Neighbor_alltoallv’? [-Wimplicit-function-declaration]
   20 |       if (MPI_Neighbor_alltoallv_c(0,0,0,MPI_INT,0,0,0,MPI_INT,MPI_COMM_WORLD)) return 1;
      |           ^~~~~~~~~~~~~~~~~~~~~~~~
      |           MPI_Neighbor_alltoallv
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:21:11: warning: implicit declaration of function ‘MPI_Ineighbor_alltoallv_c’; did you mean ‘MPI_Ineighbor_alltoallv’? [-Wimplicit-function-declaration]
   21 |       if (MPI_Ineighbor_alltoallv_c(0,0,0,MPI_INT,0,0,0,MPI_INT,MPI_COMM_WORLD,&req)) return 1;
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~
      |           MPI_Ineighbor_alltoallv
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:22:11: warning: implicit declaration of function ‘MPI_Type_get_envelope_c’; did you mean ‘MPI_Type_get_envelope’? [-Wimplicit-function-declaration]
   22 |       if (MPI_Type_get_envelope_c(MPI_INT,&nints,&naddrs,&ncounts,&ntypes,&combiner)) return 1;
      |           ^~~~~~~~~~~~~~~~~~~~~~~
      |           MPI_Type_get_envelope
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:23:11: warning: implicit declaration of function ‘MPI_Type_get_contents_c’; did you mean ‘MPI_Type_get_contents’? [-Wimplicit-function-declaration]
   23 |       if (MPI_Type_get_contents_c(MPI_INT,nints,naddrs,ncounts,ntypes,ints,addrs,counts,types)) return 1;
      |           ^~~~~~~~~~~~~~~~~~~~~~~
      |           MPI_Type_get_contents
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:24:9: warning: implicit declaration of function ‘MPI_Reduce_local_c’; did you mean ‘MPI_Reduce_local’? [-Wimplicit-function-declaration]
   24 |     if (MPI_Reduce_local_c(0,0,0,MPI_INT,MPI_SUM)) return 1;
      |         ^~~~~~~~~~~~~~~~~~
      |         MPI_Reduce_local
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {

      int          buf[1]={0},dest=1,source=1,tag=0, combiner, ints[1];
      MPI_Count    count=1, nints, naddrs, ncounts, ntypes, counts[1];
      MPI_Request  req;
      MPI_Status   stat;
      MPI_Aint     addrs[1];
      MPI_Datatype types[1];

      if (MPI_Send_c(buf,count,MPI_INT,dest,tag,MPI_COMM_WORLD)) return 1;
      if (MPI_Send_init_c(buf,count,MPI_INT,dest,tag,MPI_COMM_WORLD,&req)) return 1;
      if (MPI_Isend_c(buf,count,MPI_INT,dest,tag,MPI_COMM_WORLD,&req)) return 1;
      if (MPI_Recv_c(buf,count,MPI_INT,source,tag,MPI_COMM_WORLD,&stat)) return 1;
      if (MPI_Recv_init_c(buf,count,MPI_INT,source,tag,MPI_COMM_WORLD,&req)) return 1;
      if (MPI_Irecv_c(buf,count,MPI_INT,source,tag,MPI_COMM_WORLD,&req)) return 1;
      if (MPI_Neighbor_alltoallv_c(0,0,0,MPI_INT,0,0,0,MPI_INT,MPI_COMM_WORLD)) return 1;
      if (MPI_Ineighbor_alltoallv_c(0,0,0,MPI_INT,0,0,0,MPI_INT,MPI_COMM_WORLD,&req)) return 1;
      if (MPI_Type_get_envelope_c(MPI_INT,&nints,&naddrs,&ncounts,&ntypes,&combiner)) return 1;
      if (MPI_Type_get_contents_c(MPI_INT,nints,naddrs,ncounts,ntypes,ints,addrs,counts,types)) return 1;
    if (MPI_Reduce_local_c(0,0,0,MPI_INT,MPI_SUM)) return 1;

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:14: undefined reference to `MPI_Send_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:15: undefined reference to `MPI_Send_init_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:16: undefined reference to `MPI_Isend_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:17: undefined reference to `MPI_Recv_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:18: undefined reference to `MPI_Recv_init_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:19: undefined reference to `MPI_Irecv_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:20: undefined reference to `MPI_Neighbor_alltoallv_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:21: undefined reference to `MPI_Ineighbor_alltoallv_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:22: undefined reference to `MPI_Type_get_envelope_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:23: undefined reference to `MPI_Type_get_contents_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:24: undefined reference to `MPI_Reduce_local_c'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:14: undefined reference to `MPI_Send_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:15: undefined reference to `MPI_Send_init_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:16: undefined reference to `MPI_Isend_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:17: undefined reference to `MPI_Recv_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:18: undefined reference to `MPI_Recv_init_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:19: undefined reference to `MPI_Irecv_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:20: undefined reference to `MPI_Neighbor_alltoallv_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:21: undefined reference to `MPI_Ineighbor_alltoallv_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:22: undefined reference to `MPI_Type_get_envelope_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:23: undefined reference to `MPI_Type_get_contents_c'
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:24: undefined reference to `MPI_Reduce_local_c'
collect2: error: ld returned 1 exit status
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c: In function ‘main’:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:9:11: warning: implicit declaration of function ‘MPI_Neighbor_alltoallv_init’; did you mean ‘MPI_Neighbor_alltoallv’? [-Wimplicit-function-declaration]
    9 |       if (MPI_Neighbor_alltoallv_init(0,0,0,MPI_INT,0,0,0,MPI_INT,MPI_COMM_WORLD,info,&req)) return 1;
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
      |           MPI_Neighbor_alltoallv
Possible ERROR while running compiler:exit code 0
stderr:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c: In function ‘main’:
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:9:11: warning: implicit declaration of function ‘MPI_Neighbor_alltoallv_init’; did you mean ‘MPI_Neighbor_alltoallv’? [-Wimplicit-function-declaration]
    9 |       if (MPI_Neighbor_alltoallv_init(0,0,0,MPI_INT,0,0,0,MPI_INT,MPI_COMM_WORLD,info,&req)) return 1;
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
      |           MPI_Neighbor_alltoallv
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {

      MPI_Request req;
      MPI_Info    info = 0;
      if (MPI_Neighbor_alltoallv_init(0,0,0,MPI_INT,0,0,0,MPI_INT,MPI_COMM_WORLD,info,&req)) return 1;
    
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:9: undefined reference to `MPI_Neighbor_alltoallv_init'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o: in function `main':
/tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c:9: undefined reference to `MPI_Neighbor_alltoallv_init'
collect2: error: ld returned 1 exit status
=============================================================================================
TESTING: configureMPIX from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/MPI.py:568)
  Check for experimental functions added by MPICH or Open MPI as MPIX
=============================================================================================
TESTING: configureMPIEXEC from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/MPI.py:201)
  Checking for location of mpiexec
Executing: which mpicc
stdout: /usr/bin/mpicc
    Checking for program /usr/bin/mpiexec...found
Running Executable with threads to time it out at 60
Executing: /usr/bin/mpiexec -help all
stdout:
mpiexec (OpenRTE) 4.0.3
Usage: mpiexec [OPTION]...  [PROGRAM]...
Start the given program using Open RTE
   -allow-run-as-root|--allow-run-as-root 
                         Allow execution as root (STRONGLY DISCOURAGED)
   -am <arg0>            Aggregate MCA parameter set file list
   --app <arg0>          Provide an appfile; ignore all other command line
                         options
   --bind-to <arg0>      Policy for binding processes. Allowed values: none,
                         hwthread, core, l1cache, l2cache, l3cache, socket,
                         numa, board, cpu-list ("none" is the default when
                         oversubscribed, "core" is the default when np<=2,
                         and "socket" is the default when np>2). Allowed
                         qualifiers: overload-allowed, if-supported,
                         ordered
   -bind-to-core|--bind-to-core 
                         Bind processes to cores
   -bind-to-socket|--bind-to-socket 
                         Bind processes to sockets
   -bycore|--bycore      Whether to map and rank processes round-robin by
                         core
   -bynode|--bynode      Whether to map and rank processes round-robin by
                         node
   -byslot|--byslot      Whether to map and rank processes round-robin by
                         slot
-c|-np|--np <arg0>       Number of processes to run
   -cf|--cartofile <arg0>  
                         Provide a cartography file
   -continuous|--continuous 
                         Job is to run until explicitly terminated
   -cpu-list|--cpu-list <arg0>  
                         List of processor IDs to bind processes to
                         [default=NULL]
   -cpu-set|--cpu-set <arg0>  
                         Comma-separated list of ranges specifying logical
                         cpus allocated to this job [default: none]
   -cpus-per-proc|--cpus-per-proc <arg0>  
                         Number of cpus to use for each process [default=1]
   -cpus-per-rank|--cpus-per-rank <arg0>  
                         Synonym for cpus-per-proc
-d|-debug-devel|--debug-devel 
                         Enable debugging of OpenRTE
   -debug|--debug        Invoke the user-level debugger indicated by the
                         orte_base_user_debugger MCA parameter
   -debug-daemons|--debug-daemons 
                         Enable debugging of any OpenRTE daemons used by
                         this application
   -debug-daemons-file|--debug-daemons-file 
                         Enable debugging of any OpenRTE daemons used by
                         this application, storing output in files
   -debugger|--debugger <arg0>  
                         Sequence of debuggers to search for when "--debug"
                         is used
   -default-hostfile|--default-hostfile <arg0>  
                         Provide a default hostfile
   -disable-recovery|--disable-recovery 
                         Disable recovery (resets all recovery options to
                         off)
   -display-allocation|--display-allocation 
                         Display the allocation being used by this job
   -display-devel-allocation|--display-devel-allocation 
                         Display a detailed list (mostly intended for
                         developers) of the allocation being used by this
                         job
   -display-devel-map|--display-devel-map 
                         Display a detailed process map (mostly intended for
                         developers) just before launch
   -display-diffable-map|--display-diffable-map 
                         Display a diffable process map (mostly intended for
                         developers) just before launch
   -display-map|--display-map 
                         Display the process map just before launch
   -display-topo|--display-topo 
                         Display the topology as part of the process map
                         (mostly intended for developers) just before
                         launch
   -do-not-launch|--do-not-launch 
                         Perform all necessary operations to prepare to
                         launch the application, but do not actually launch
                         it
   -do-not-resolve|--do-not-resolve 
                         Do not attempt to resolve interfaces
   -dvm|--dvm            Create a persistent distributed virtual machine
                         (DVM)
   -enable-instant-on-support|--enable-instant-on-support 
                         Enable PMIx-based instant on launch support
                         (experimental)
   -enable-recovery|--enable-recovery 
                         Enable recovery from process failure [Default =
                         disabled]
   -fwd-mpirun-port|--fwd-mpirun-port 
                         Forward mpirun port to compute node daemons so all
                         will use it
   -get-stack-traces|--get-stack-traces 
                         Get stack traces of all application procs on
                         timeout
   -gmca|--gmca <arg0> <arg1>  
                         Pass global MCA parameters that are applicable to
                         all contexts (arg0 is the parameter name; arg1 is
                         the parameter value)
-h|--help <arg0>         This help message
-H|-host|--host <arg0>   List of hosts to invoke processes on
   -hnp|--hnp <arg0>     Specify the URI of the HNP, or the name of the file
                         (specified as file:filename) that contains that
                         info
   -hostfile|--hostfile <arg0>  
                         Provide a hostfile
   -index-argv-by-rank|--index-argv-by-rank 
                         Uniquely index argv[0] for each process using its
                         rank
   -launch-agent|--launch-agent <arg0>  
                         Command used to start processes on remote nodes
                         (default: orted)
   -leave-session-attached|--leave-session-attached 
                         Enable debugging of OpenRTE
   -machinefile|--machinefile <arg0>  
                         Provide a hostfile
   --map-by <arg0>       Mapping Policy [slot | hwthread | core | socket
                         (default) | numa | board | node]
   -max-restarts|--max-restarts <arg0>  
                         Max number of times to restart a failed process
   -max-vm-size|--max-vm-size <arg0>  
                         Number of processes to run
   -mca|--mca <arg0> <arg1>  
                         Pass context-specific MCA parameters; they are
                         considered global if --gmca is not used and only
                         one context is specified (arg0 is the parameter
                         name; arg1 is the parameter value)
   -merge-stderr-to-stdout|--merge-stderr-to-stdout 
                         Merge stderr to stdout for each process
   -N <arg0>             Launch n processes per node on all allocated nodes
                         (synonym for 'map-by node')
   -n|--n <arg0>         Number of processes to run
   -nolocal|--nolocal    Do not run any MPI applications on the local node
   -nooversubscribe|--nooversubscribe 
                         Nodes are not to be oversubscribed, even if the
                         system supports such operation
   --noprefix            Disable automatic --prefix behavior
   -novm|--novm          Execute without creating an allocation-spanning
                         virtual machine (only start daemons on nodes
                         hosting application procs)
   -npernode|--npernode <arg0>  
                         Launch n processes per node on all allocated nodes
   -npersocket|--npersocket <arg0>  
                         Launch n processes per socket on all allocated
                         nodes
   -ompi-server|--ompi-server <arg0>  
                         Specify the URI of the publish/lookup server, or
                         the name of the file (specified as file:filename)
                         that contains that info
   -output-filename|--output-filename <arg0>  
                         Redirect output from application processes into
                         filename/job/rank/std[out,err,diag]. A relative
                         path value will be converted to an absolute path
   -output-proctable|--output-proctable 
                         Output the debugger proctable after launch
   -oversubscribe|--oversubscribe 
                         Nodes are allowed to be oversubscribed, even on a
                         managed system, and overloading of processing
                         elements
   -path|--path <arg0>   PATH to be used to look for executables to start
                         processes
   -pernode|--pernode    Launch one process per available node
   -personality|--personality <arg0>  
                         Comma-separated list of programming model,
                         languages, and containers being used
                         (default="ompi")
   --ppr <arg0>          Comma-separated list of number of processes on a
                         given resource type [default: none]
   --prefix <arg0>       Prefix where Open MPI is installed on remote nodes
   --preload-files <arg0>  
                         Preload the comma separated list of files to the
                         remote machines current working directory before
                         starting the remote process.
-q|--quiet               Suppress helpful messages
   --rank-by <arg0>      Ranking Policy [slot (default) | hwthread | core |
                         socket | numa | board | node]
   -report-bindings|--report-bindings 
                         Whether to report process bindings to stderr
   -report-child-jobs-separately|--report-child-jobs-separately 
                         Return the exit status of the primary job only
   -report-events|--report-events <arg0>  
                         Report events to a tool listening at the specified
                         URI
   -report-pid|--report-pid <arg0>  
                         Printout pid on stdout [-], stderr [+], or a file
                         [anything else]
   -report-state-on-timeout|--report-state-on-timeout 
                         Report all job and process states upon timeout
   -report-uri|--report-uri <arg0>  
                         Printout URI on stdout [-], stderr [+], or a file
                         [anything else]
   -rf|--rankfile <arg0>  
                         Provide a rankfile file
-s|--preload-binary      Preload the binary on the remote machine before
                         starting the remote process.
   -set-cwd-to-session-dir|--set-cwd-to-session-dir 
                         Set the working directory of the started processes
                         to their session directory
   -show-progress|--show-progress 
                         Output a brief periodic report on launch progress
   -stdin|--stdin <arg0>  
                         Specify procs to receive stdin [rank, all, none]
                         (default: 0, indicating rank 0)
   -tag-output|--tag-output 
                         Tag all output with [job,rank]
   -timeout|--timeout <arg0>  
                         Timeout the job after the specified number of
                         seconds
   -timestamp-output|--timestamp-output 
                         Timestamp all application process output
   -tune <arg0>          Application profile options file list
   -tv|--tv              Deprecated backwards compatibility flag; synonym
                         for "--debug"
   -use-hwthread-cpus|--use-hwthread-cpus 
                         Use hardware threads as independent cpus
   -use-regexp|--use-regexp 
                         Use regular expressions for launch
-v|--verbose             Be verbose
-V|--version             Print version and exit
   -wd|--wd <arg0>       Synonym for --wdir
   -wdir|--wdir <arg0>   Set the working directory of the started processes
-x <arg0>                Export an environment variable, optionally
                         specifying a value (e.g., "-x foo" exports the
                         environment variable foo and takes its value from
                         the current environment; "-x foo=bar" exports the
                         environment variable name foo and sets its value to
                         "bar" in the started processes)
   -xml|--xml            Provide all output in XML format
   -xml-file|--xml-file <arg0>  
                         Provide all output in XML format to the specified
                         file
   -xterm|--xterm <arg0>  
                         Create a new xterm window and display output from
                         the specified ranks there
For additional mpirun arguments, run 'mpirun --help <category>'
The following categories exist: general (Defaults to this option), debug,
    output, input, mapping, ranking, binding, devel (arguments useful to OMPI
    Developers), compatibility (arguments supported for backwards compatibility),
    launch (arguments to modify launch options), and dvm (Distributed Virtual
    Machine arguments).
Report bugs to http://www.open-mpi.org/community/help/
    Checking for program /usr/bin/mpiexec...found
Running Executable with threads to time it out at 120
Executing: /usr/bin/mpiexec -n 1 printenv
stdout:
OMPI_MCA_pmix=^s1,s2,cray,isolated
PMIX_MCA_mca_base_component_show_load_errors=1
OMPI_COMMAND=printenv
OMPI_MCA_orte_precondition_transports=0a9904186c7eda04-b0a4bce2bfdab3e0
LESSOPEN=| /usr/bin/lesspipe %s
USER=ntilton
SSH_CLIENT=138.67.171.130 54334 22
XDG_SESSION_TYPE=tty
SHLVL=1
MOTD_SHOWN=pam
HOME=/u/pa/bg/ntilton
OLDPWD=/u/pa/bg/ntilton
SSH_TTY=/dev/pts/0
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/28957/bus
LOGNAME=ntilton
_=./configure
XDG_SESSION_CLASS=user
TERM=xterm-256color
XDG_SESSION_ID=749
COLUMNS=140
PATH=/usr/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
XDG_RUNTIME_DIR=/run/user/28957
LANG=en_US.UTF-8
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:
SHELL=/bin/bash
KRB5CCNAME=KEYRING:persistent:28957
LESSCLOSE=/usr/bin/lesspipe %s %s
PWD=/u/pa/bg/ntilton/petsc
SSH_CONNECTION=138.67.171.130 54334 138.67.40.252 22
XDG_DATA_DIRS=/usr/local/share:/usr/share:/var/lib/snapd/desktop
LINES=38
IPATH_NO_BACKTRACE=1
HFI_NO_BACKTRACE=1
LD_LIBRARY_PATH=/usr/lib:/usr/lib
OMPI_MCA_orte_local_daemon_uri=1970339840.0;tcp://138.67.40.252:59151
OMPI_MCA_orte_hnp_uri=1970339840.0;tcp://138.67.40.252:59151
OMPI_MCA_mpi_oversubscribe=0
OMPI_MCA_orte_app_num=0
OMPI_UNIVERSE_SIZE=56
OMPI_MCA_orte_num_nodes=1
OMPI_MCA_shmem_RUNTIME_QUERY_hint=mmap
OMPI_MCA_orte_bound_at_launch=1
OMPI_MCA_ess=^singleton
OMPI_MCA_orte_ess_num_procs=1
OMPI_COMM_WORLD_SIZE=1
OMPI_COMM_WORLD_LOCAL_SIZE=1
OMPI_MCA_orte_tmpdir_base=/tmp
OMPI_MCA_orte_top_session_dir=/tmp/ompi.Odin.28957
OMPI_MCA_orte_jobfam_session_dir=/tmp/ompi.Odin.28957/pid.232105
OMPI_NUM_APP_CTX=1
OMPI_FIRST_RANKS=0
OMPI_APP_CTX_NUM_PROCS=1
OMPI_MCA_initial_wdir=/u/pa/bg/ntilton/petsc
OMPI_MCA_orte_launch=1
PMIX_NAMESPACE=1970339841
PMIX_RANK=0
PMIX_SERVER_URI3=1970339840.0;tcp4://127.0.0.1:40945
PMIX_SERVER_URI2=1970339840.0;tcp4://127.0.0.1:40945
PMIX_SERVER_URI21=1970339840.0;tcp4://127.0.0.1:40945
PMIX_SECURITY_MODE=native
PMIX_PTL_MODULE=tcp,usock
PMIX_BFROP_BUFFER_TYPE=PMIX_BFROP_BUFFER_NON_DESC
PMIX_GDS_MODULE=ds21,ds12,hash
PMIX_SERVER_TMPDIR=/tmp/ompi.Odin.28957/pid.232105
PMIX_SYSTEM_TMPDIR=/tmp
PMIX_DSTORE_21_BASE_PATH=/tmp/ompi.Odin.28957/pid.232105/pmix_dstor_ds21_232105
PMIX_DSTORE_ESH_BASE_PATH=/tmp/ompi.Odin.28957/pid.232105/pmix_dstor_ds12_232105
PMIX_HOSTNAME=Odin.mines.edu
PMIX_VERSION=3.1.5
OMPI_MCA_ess_base_jobid=1970339841
OMPI_MCA_ess_base_vpid=0
OMPI_COMM_WORLD_RANK=0
OMPI_COMM_WORLD_LOCAL_RANK=0
OMPI_COMM_WORLD_NODE_RANK=0
OMPI_MCA_orte_ess_node_rank=0
PMIX_ID=1970339841.0
OMPI_FILE_LOCATION=/tmp/ompi.Odin.28957/pid.232105/0/0
stdout: No protocol specified
                Defined "HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE" to "OMP"
                Defined make macro "MPIEXEC" to "/usr/bin/mpiexec --oversubscribe"
    Checking for program /usr/libexec/ApplicationFirewall/socketfilterfw...not found
    Checking for program /u/pa/bg/ntilton/petsc/lib/petsc/bin/win32fe/socketfilterfw...not found
  Unable to find programs: ['socketfilterfw'] in listing of the specific search path: ['/usr/libexec/ApplicationFirewall']
      Warning accessing /usr/libexec/ApplicationFirewall gives errors: [Errno 2] No such file or directory: '/usr/libexec/ApplicationFirewall'
    Checking for program /usr/local/sbin/hostname...not found
    Checking for program /usr/local/bin/hostname...not found
    Checking for program /usr/sbin/hostname...not found
    Checking for program /usr/bin/hostname...found
                  Defined make macro "HOSTNAME" to "hostname"
Running Executable with threads to time it out at 60
Executing: hostname
stdout: Odin.mines.edu
              Return code from hostname: 0

              Hostname works, running network checks
    Checking for program /sbin/ping...not found
    Checking for program /usr/local/sbin/ping...not found
    Checking for program /usr/local/bin/ping...not found
    Checking for program /usr/sbin/ping...not found
    Checking for program /usr/bin/ping...found
                  Defined make macro "PING" to "ping"
Running Executable with threads to time it out at 60
Executing: ping -c 2 Odin.mines.edu
stdout:
PING Odin.mines.edu (138.67.40.252) 56(84) bytes of data.
64 bytes from odin.mines.edu (138.67.40.252): icmp_seq=1 ttl=64 time=0.021 ms
64 bytes from odin.mines.edu (138.67.40.252): icmp_seq=2 ttl=64 time=0.028 ms
--- Odin.mines.edu ping statistics ---
2 packets transmitted, 2 received, 0% packet loss, time 1012ms
rtt min/avg/max/mdev = 0.021/0.024/0.028/0.003 ms
              Return code from ping: 0

=============================================================================================
======== Checking running linked program
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {
MPI_Init(0,0);
MPI_Finalize();

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -lquadmath -ldl 
Testing executable /tmp/petsc-7m47ck2r/config.packages.MPI/conftest to see if it can be run
Executing: /usr/bin/mpiexec --oversubscribe -n 1 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest
Running Executable with threads to time it out at 120
Executing: /usr/bin/mpiexec --oversubscribe -n 1 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest
stdout: No protocol specified
=============================================================================================
TESTING: configureMPIEXEC_TAIL from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/MPI.py:190)
  Checking for location of mpiexec_tail
                Defined make macro "MPIEXEC_TAIL" to ""
=============================================================================================
TESTING: configureMPITypes from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/MPI.py:614)
  Checking for MPI Datatype handles
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdlib.h>
#include <mpi.h>

int main(void) {
int size;
int ierr;
MPI_Init(0,0);
ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size);
if(ierr || (size == 0)) exit(1);
MPI_Finalize();

  return 0;
}

                Defined "HAVE_MPI_LONG_DOUBLE" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdlib.h>
#include <mpi.h>

int main(void) {
int size;
int ierr;
MPI_Init(0,0);
ierr = MPI_Type_size(MPI_INT64_T, &size);
if(ierr || (size == 0)) exit(1);
MPI_Finalize();

  return 0;
}

                Defined "HAVE_MPI_INT64_T" to "1"
=============================================================================================
TESTING: SGIMPICheck from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/MPI.py:661)
  Returns true if SGI MPI is used
                Checking for functions [MPI_SGI_barrier] in library [] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char MPI_SGI_barrier(void);
static void _check_MPI_SGI_barrier(void) { MPI_SGI_barrier(); }

int main(void) {
_check_MPI_SGI_barrier();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o -lquadmath -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_MPI_SGI_barrier':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_MPI_SGI_barrier':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier'
collect2: error: ld returned 1 exit status
              SGI MPI test failure
=============================================================================================
TESTING: CxxMPICheck from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/MPI.py:671)
  Make sure C++ can compile and link
Checking for header mpi.h
Checking for C++ MPI_Finalize()
                Checking for functions [MPI_Finalize] in library [] []
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/config.libraries  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC   /tmp/petsc-7m47ck2r/config.libraries/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <mpi.h>
static void _check_MPI_Finalize(void) { int ierr;
ierr = MPI_Finalize();
(void)ierr; }

int main(void) {
_check_MPI_Finalize();
  return 0;
}

Executing: mpicxx  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o -lquadmath -ldl 
=============================================================================================
TESTING: FortranMPICheck from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/MPI.py:687)
  Make sure fortran include [mpif.h] and library symbols are found
Checking for fortran mpi_init()
                Checking for functions [] in library [] []
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0    /tmp/petsc-7m47ck2r/config.libraries/conftest.F90 
Successful compile:
Source:
      program main
#include "mpif.h"
       integer ierr
       call mpi_init(ierr)
      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.o -lquadmath -ldl 
Checking for mpi.mod
                Checking for functions [] in library [] []
Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0    /tmp/petsc-7m47ck2r/config.libraries/conftest.F90 
Successful compile:
Source:
      program main
       use mpi
       integer(kind=selected_int_kind(5)) ierr,rank
       call mpi_init(ierr)
       call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr)

      end

Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.o -lquadmath -ldl 
                Defined "HAVE_MPI_F90MODULE" to "1"
=============================================================================================
TESTING: configureIO from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/MPI.py:708)
  Check for the functions in MPI/IO
       - Define HAVE_MPIIO if they are present
       - Some older MPI 1 implementations are missing these
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {
MPI_Aint lb, extent;
if (MPI_Type_get_extent(MPI_INT, &lb, &extent)) { }

                                                 MPI_File fh = 0;
void *buf = 0;
MPI_Status status;
if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)) { }

                                                 if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)) { }

                                                 MPI_Offset disp = 0;
MPI_Info info = 0;
if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)) { }

                                                 if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)) { }

                                                 if (MPI_File_close(&fh)) { }

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o  -lquadmath -ldl 
                Defined "HAVE_MPIIO" to "1"
=============================================================================================
TESTING: findMPIIncludeAndLib from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/MPI.py:827)
  Find MPI include paths and libraries from "mpicc -show" or Cray "cc --cray-print-opts=cflags/libs" and save.
=============================================================================================
TESTING: PetscArchMPICheck from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/MPI.py:911)
  Check that previously configured for MPI include files are not in the PETSC_ARCH directory
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {
int combiner = MPI_COMBINER_DUP;(void)combiner;
  return 0;
}

            Defined "HAVE_MPI_COMBINER_DUP" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {
int combiner = MPI_COMBINER_CONTIGUOUS;(void)combiner;
  return 0;
}

            Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0   /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>

int main(void) {
int combiner = MPI_COMBINER_NAMED;(void)combiner;
  return 0;
}

            Defined "HAVE_MPI_COMBINER_NAMED" to "1"
=============================================================================================
TESTING: checkVersion from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1191)
  Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"

#include "mpi.h"
#define  PetscXstr_(s) PetscStr_(s)
#define  PetscStr_(s)  #s
const char *ver = "petscpkgver(" PetscXstr_(MPI_VERSION) ")";

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.packages.MPI  -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/lib /tmp/petsc-7m47ck2r/config.packages.MPI/conftest.c 
Found the raw version string: (" "3" ")"
This is the processed version string: 3
For mpi need 2 <= 3 <= 
=============================================================================================
TESTING: checkSharedLibrary from config.packages.MPI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1104)
  By default we don't care about checking if the library is shared
    child config.packages.MPI took 6.334411 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.zstd(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.zstd(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.zstd took 0.002565 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.yaml(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.yaml(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.yaml took 0.001611 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.sprng(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.sprng(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.sprng took 0.001584 seconds
      PETSc clone, checking for Sowing 

    Checking for program /usr/local/sbin/pdflatex...not found
    Checking for program /usr/local/bin/pdflatex...not found
    Checking for program /usr/sbin/pdflatex...not found
    Checking for program /usr/bin/pdflatex...found
          Defined make macro "PDFLATEX" to "/usr/bin/pdflatex"
    Checking for program /usr/local/sbin/bfort...not found
    Checking for program /usr/local/bin/bfort...not found
    Checking for program /usr/sbin/bfort...not found
    Checking for program /usr/bin/bfort...not found
    Checking for program /sbin/bfort...not found
    Checking for program /bin/bfort...not found
    Checking for program /usr/games/bfort...not found
    Checking for program /usr/local/games/bfort...not found
    Checking for program /snap/bin/bfort...not found
    Checking for program /u/pa/bg/ntilton/petsc/lib/petsc/bin/win32fe/bfort...not found
    Checking for program /usr/local/sbin/doctext...not found
    Checking for program /usr/local/bin/doctext...not found
    Checking for program /usr/sbin/doctext...not found
    Checking for program /usr/bin/doctext...not found
    Checking for program /sbin/doctext...not found
    Checking for program /bin/doctext...not found
    Checking for program /usr/games/doctext...not found
    Checking for program /usr/local/games/doctext...not found
    Checking for program /snap/bin/doctext...not found
    Checking for program /u/pa/bg/ntilton/petsc/lib/petsc/bin/win32fe/doctext...not found
    Checking for program /usr/local/sbin/mapnames...not found
    Checking for program /usr/local/bin/mapnames...not found
    Checking for program /usr/sbin/mapnames...not found
    Checking for program /usr/bin/mapnames...not found
    Checking for program /sbin/mapnames...not found
    Checking for program /bin/mapnames...not found
    Checking for program /usr/games/mapnames...not found
    Checking for program /usr/local/games/mapnames...not found
    Checking for program /snap/bin/mapnames...not found
    Checking for program /u/pa/bg/ntilton/petsc/lib/petsc/bin/win32fe/mapnames...not found
    Checking for program /usr/local/sbin/bib2html...not found
    Checking for program /usr/local/bin/bib2html...not found
    Checking for program /usr/sbin/bib2html...not found
    Checking for program /usr/bin/bib2html...not found
    Checking for program /sbin/bib2html...not found
    Checking for program /bin/bib2html...not found
    Checking for program /usr/games/bib2html...not found
    Checking for program /usr/local/games/bib2html...not found
    Checking for program /snap/bin/bib2html...not found
    Checking for program /u/pa/bg/ntilton/petsc/lib/petsc/bin/win32fe/bib2html...not found
      Bfort not found. Installing sowing for FortranStubs
=============================================================================================
TESTING: consistencyChecks from config.packages.sowing(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: checkDependencies from config.packages.sowing(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1008)
  Loop over declared dependencies of package and error if any are missing
=============================================================================================
TESTING: configureLibrary from config.packages.sowing(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1034)
  Find an installation and check if it can work with PETSc
==================================================================================
            Checking for a functional sowing
                    Looking for SOWING at git.sowing, hg.sowing or a directory starting with ['petsc-pkg-sowing']
                    Could not locate an existing copy of SOWING:
                      []
                    Downloading sowing
=============================================================================================
           Trying to download https://bitbucket.org/petsc/pkg-sowing.git for SOWING
=============================================================================================
                        install: Retrieving https://bitbucket.org/petsc/pkg-sowing.git as git repo
Executing: git clone  https://bitbucket.org/petsc/pkg-sowing.git /u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing
stdout: Cloning into '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing'...
                      Looking for SOWING at git.sowing, hg.sowing or a directory starting with ['petsc-pkg-sowing']
                      Found a copy of SOWING in git.sowing
Executing: ['git', 'rev-parse', '--git-dir']
stdout: .git
Executing: ['git', 'cat-file', '-e', 'v1.1.26.12^{commit}']
Executing: ['git', 'rev-parse', 'v1.1.26.12']
stdout: 8ec17636b4e930d33817d862163ea4e29104efb4
Executing: ['git', 'cat-file', '-e', 'origin/v1.1.26.12^{commit}']
stdout: fatal: Not a valid object name origin/v1.1.26.12^{commit}
Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash']
stdout: No local changes to save
Executing: ['git', 'clean', '-f', '-d', '-x']
Executing: ['git', 'checkout', '-f', '8ec17636b4e930d33817d862163ea4e29104efb4']
stdout:
Note: switching to '8ec17636b4e930d33817d862163ea4e29104efb4'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
  git switch -c <new-branch-name>
Or undo this operation with:
  git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at 8ec1763 Update version to 1.1.26.12
SOWING was just downloaded, forcing a rebuild because cannot determine if package has changed
=============================================================================================
                  Running configure on SOWING; this may take several minutes
=============================================================================================
Executing: ./configure --prefix=/u/pa/bg/ntilton/petsc/arch-linux-c-debug CPPFLAGS=-O2
stdout:
checking for ranlib... ranlib
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking for ar... ar
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for c++... c++
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking for virtual path format... VPATH
checking for latex... /usr/bin/latex
checking for gs... /usr/bin/gs
checking for pnmcrop... /usr/bin/pnmcrop
checking for pbmtoxbm... /usr/bin/pbmtoxbm
checking for ppmtogif... /usr/bin/ppmtogif
checking for pnmquant... /usr/bin/pnmquant
checking for perl... /usr/bin/perl
checking how to run the C preprocessor... gcc -E
checking for egrep... /usr/bin/egrep
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking pwd.h usability... yes
checking pwd.h presence... yes
checking for pwd.h... yes
checking for stdlib.h... (cached) yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking for string.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for C/C++ restrict keyword... __restrict
checking for uid_t in sys/types.h... yes
checking for size_t... yes
checking whether time.h and sys/time.h may both be included... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking size of void *... 8
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking for vprintf... yes
checking for _doprnt... no
checking for getcwd... yes
checking for gethostname... yes
checking for getwd... yes
checking for mkdir... yes
checking that mkdir accepts -p... yes
checking for uname... yes
checking for gethostbyname... yes
checking how to run the C++ preprocessor... c++ -E
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for realpath... yes
checking for readlink... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating Makerules
config.status: creating src/Makefile
config.status: creating src/sys/Makefile
config.status: creating src/sys/testing/Makefile
config.status: creating src/tohtml/Makefile
config.status: creating src/tohtml/tohtmlpath.h
config.status: creating src/tohtml/testing/Makefile
config.status: creating bin/pstoxbm
config.status: creating bin/pstogif
config.status: creating bin/bib2html
config.status: creating src/bfort/Makefile
config.status: creating src/bfort/testing/Makefile
config.status: creating src/textfilt/Makefile
config.status: creating src/doctext/Makefile
config.status: creating src/doctext/docpath.h
config.status: creating src/doctext/test/Makefile
config.status: creating src/mapnames/Makefile
config.status: creating src/bib2html/Makefile
config.status: creating docs/Makefile
config.status: creating docs/bfort/Makefile
config.status: creating docs/doctext/Makefile
config.status: creating docs/install/Makefile
config.status: creating docs/tohtml/Makefile
config.status: creating include/patchlevel.h
config.status: creating include/textfilt/textpath.h
config.status: creating src/bfort/testing2/Makefile
config.status: creating include/sowingconfig.h
config.status: executing bib2html commands
=============================================================================================
                    Running make on SOWING; this may take several minutes
=============================================================================================
Executing: /usr/bin/make clean
stdout:
for dir in src docs ; do ( cd $dir && /usr/bin/make clean ) ; done
make[1]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src'
for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; /usr/bin/make clean ) ; done
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/sys'
rm -f *.o *~ 
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/sys'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bfort'
rm -f *.o *~ bfort-old bfort
rm -f bfort\ win32/debug/*
rm -f *.gcda *.gcno *.gcov
(cd testing && /usr/bin/make clean )
make[3]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bfort/testing'
rm -f n1f.c n2f.c tstpgmaf.c tstpgma2f.c tstpgmbf.c tstcf.c tst2cf.c tst3cf.c tstpgmaf90.f90 tstpgmbf90.f90 config.log
make[3]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bfort/testing'
(cd testing2 && /usr/bin/make clean )
make[3]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bfort/testing2'
rm -f tbasef.c tbasef2.c tbasef3.c tbasef4.c tcharf.c tcharf2.c tmpif.c tretf.c tpetscf.c thandlef.c theadhf.c tmp/tbasef.c tmp/tbasef2.c tpetsc.f90 thandle.f90 malformf.c tbaserm.c
rm -rf tmp
make[3]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bfort/testing2'
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bfort'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/tohtml'
/bin/rm -f *.o *~ tohtml tortf
/bin/rm -f tohtml\ win32/debug/*
(cd testing && /usr/bin/make clean )
make[3]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/tohtml/testing'
rm -rf test[1-9] test1[0-9] test2[0-9]
rm -f test[1-9].html
rm -f latex.err *.hux img*.xbm img*.gif
rm -f up.gif previous.gif next.gif
rm -f test1[0-9].html test2[0-9].html test7a.html
rm -f test[0-9].htm test[1-2][0-9].htm
rm -f testf1.ps testf1.gif
rm -f inplace subfiles
rm -f *.ler *.aux *.out
make[3]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/tohtml/testing'
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/tohtml'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/doctext'
/bin/rm -f *.o *~ doctext doc2lt
(cd test ; if [ -s Makefile ] ; then /usr/bin/make clean ; fi )
make[3]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/doctext/test'
rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit
make[3]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/doctext/test'
/bin/rm -f doctext\ win32/debug/*
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/doctext'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/textfilt'
/bin/rm -f *.o *~
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/textfilt'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/mapnames'
/bin/rm -f *.o *~ mapnames ccc test1.html test1.tex test1nc.tex test1nc.html test1.pmap
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/mapnames'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bib2html'
rm -f tout.htm tout-bib.htm
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bib2html'
make[1]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src'
make[1]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs/bfort'
rm -f bfort.pdf \
	*.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs/bfort'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs/doctext'
rm -f doctext.pdf \
	*.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs/doctext'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs/install'
rm -f install.pdf \
	*.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs/install'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs/tohtml'
rm -f tohtml.pdf \
	*.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs/tohtml'
make[1]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs'
/bin/rm -f lib/libsowing.a lib/libtfilter.a
Executing: /usr/bin/make  
stdout:
(cd src/sys && /usr/bin/make )
make[1]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/sys'
gcc  -I../../include -I../../include -O2   -c arch.c
gcc  -I../../include -I../../include -O2   -c txt.c
gcc  -I../../include -I../../include -O2   -c daytime.c
gcc  -I../../include -I../../include -O2   -c file.c
gcc  -I../../include -I../../include -O2   -c tr.c
gcc  -I../../include -I../../include -O2   -c getopts.c
gcc  -I../../include -I../../include -O2   -c rdconfig.c
ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o rdconfig.o
ranlib ../../lib/libsowing.a
make[1]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/sys'
(cd src/tohtml && /usr/bin/make )
make[1]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/tohtml'
gcc  -I../../include -I. -I../../include -O2   -c tohtml.c
gcc  -I../../include -I. -I../../include -O2   -c tex2html.c
gcc  -I../../include -I. -I../../include -O2   -c search.c
gcc  -I../../include -I. -I../../include -O2   -c texactio.c
gcc  -I../../include -I. -I../../include -O2   -c rdaux.c
gcc  -I../../include -I. -I../../include -O2   -c rdindx.c
gcc  -I../../include -I. -I../../include -O2   -c label.c
gcc  -I../../include -I. -I../../include -O2   -c scan.c
gcc  -I../../include -I. -I../../include -O2   -c refmap.c
gcc  -I../../include -I. -I../../include -O2   -c style.c
gcc  -I../../include -I. -I../../include -O2   -c dimen.c
gcc  -I../../include -I. -I../../include -O2   -c userdef.c
gcc  -I../../include -I. -I../../include -O2   -c tabular.c
gcc  -I../../include -I. -I../../include -O2   -c biblio.c
gcc  -I../../include -I. -I../../include -O2   -c environ.c
gcc  -I../../include -I. -I../../include -O2   -c math.c
gcc  -I../../include -I. -I../../include -O2   -c rddefs.c
gcc  -I../../include -I. -I../../include -O2   -c latexinfo.c
gcc  -I../../include -I. -I../../include -O2   -c accent.c
gcc  -I../../include -I. -I../../include -O2   -c simpleif.c
gcc   -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a
make[1]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/tohtml'
(cd src/bfort && /usr/bin/make )
make[1]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bfort'
gcc -DBASEDEF='"/u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/bfort-base.txt"' -DBASEPATH='"/u/pa/bg/ntilton/petsc/arch-linux-c-debug/share"' -I../../include -I../../include -O2   -c bfort.c
gcc -DBASEDEF='"/u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/bfort-base.txt"' -DBASEPATH='"/u/pa/bg/ntilton/petsc/arch-linux-c-debug/share"' -I../../include -I../../include -O2   -c doc.c
gcc   -o bfort bfort.o doc.o ../../lib/libsowing.a
make[1]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bfort'
(cd src/textfilt && /usr/bin/make )
make[1]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/textfilt'
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c cmdline.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c file.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c instream.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c outstream.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c search.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c maptok.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c textout.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c texthtml.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c textnroff.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c texttex.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c textmyst.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c inutil.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c errhand.cc
ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o textmyst.o inutil.o errhand.o
ranlib ../../lib/libtfilter.a
make[1]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/textfilt'
(cd src/doctext && /usr/bin/make )
make[1]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/doctext'
c++  -I../../include/textfilt -I../../include -I. -I../../include -O2   -c doctext.cc
c++  -I../../include/textfilt -I../../include -I. -I../../include -O2   -c docutil.cc
c++  -I../../include/textfilt -I../../include -I. -I../../include -O2   -c keyword.cc
c++  -I../../include/textfilt -I../../include -I. -I../../include -O2   -c dotfmat.cc
c++  -I../../include/textfilt -I../../include -I. -I../../include -O2   -c incfiles.cc
c++  -I../../include/textfilt -I../../include -I. -I../../include -O2   -c quotefmt.cc
c++  -I../../include/textfilt -I../../include -I. -I../../include -O2   -c textb.cc
c++  -I../../include/textfilt -I../../include -I. -I../../include -O2   -c docfields.cc
c++   -o doctext doctext.o docutil.o keyword.o dotfmat.o \
incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a
c++  -I../../include/textfilt -I../../include -I. -I../../include -O2   -c doc2lt.cc
c++   -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a
make[1]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/doctext'
(cd src/textfilt && /usr/bin/make )
make[1]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/textfilt'
make[1]: Nothing to be done for 'ALL'.
make[1]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/textfilt'
(cd src/mapnames && /usr/bin/make )
make[1]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/mapnames'
c++  -I../../include/textfilt -I../../include -O2   -c mapnames.cc
c++   -o mapnames mapnames.o ../../lib/libtfilter.a
make[1]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/mapnames'
stdout:
file.c: In function ‘SYGetwd’:
file.c:770:5: warning: ignoring return value of ‘getcwd’, declared with attribute warn_unused_result [-Wunused-result]
  770 |     getcwd( path, len );
      |     ^~~~~~~~~~~~~~~~~~~
tohtml.c: In function ‘CopyImgFiles’:
tohtml.c:1126:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1126 |     system( pgm );
      |     ^~~~~~~~~~~~~
tohtml.c:1129:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1129 |     system( pgm );
      |     ^~~~~~~~~~~~~
tohtml.c:1131:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1131 |     system( pgm );
      |     ^~~~~~~~~~~~~
tohtml.c:1134:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1134 |  system( pgm );
      |  ^~~~~~~~~~~~~
tohtml.c:1136:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1136 |  system( pgm );
      |  ^~~~~~~~~~~~~
tohtml.c:1138:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1138 |  system( pgm );
      |  ^~~~~~~~~~~~~
tohtml.c:1140:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1140 |  system( pgm );
      |  ^~~~~~~~~~~~~
tohtml.c:1142:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1142 |  system( pgm );
      |  ^~~~~~~~~~~~~
tex2html.c: In function ‘TX_XBM_size’:
tex2html.c:776:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  776 |     fscanf( f, "#define %s %d\n", lbuf, width );
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tex2html.c:778:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  778 |     fscanf( f, "#define %s %d\n", lbuf, height );
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
texactio.c: In function ‘TXepsfbox’:
texactio.c:3160:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 3160 |   system( tmpbuf );
      |   ^~~~~~~~~~~~~~~~
texactio.c:3204:6: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 3204 |      system( pgm );
      |      ^~~~~~~~~~~~~
texactio.c:3212:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 3212 |       system( pgm );
      |       ^~~~~~~~~~~~~
texactio.c: In function ‘TXref’:
texactio.c:823:40: warning: ‘#Node’ directive output may be truncated writing 5 bytes into a region of size between 1 and 256 [-Wformat-truncation=]
  823 |   snprintf( lfname, sizeof(lfname), "%s#Node", fname );
      |                                        ^~~~~
In file included from /usr/include/stdio.h:867,
                 from texactio.c:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output between 6 and 261 bytes into a destination of size 256
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
texactio.c: In function ‘TXepsfbox’:
texactio.c:3131:21: warning: ‘%s’ directive writing up to 255 bytes into a region of size 254 [-Wformat-overflow=]
 3131 |  sprintf( fname, "./%s", imgoutfile );
      |                     ^~   ~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
                 from texactio.c:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 258 bytes into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
texactio.c:3129:22: warning: ‘%s’ directive writing up to 255 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
 3129 |  sprintf( fname, "%s/%s", splitdir, imgoutfile );
      |                      ^~             ~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
                 from texactio.c:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 512 bytes into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
texactio.c: In function ‘TXbegin’:
texactio.c:2427:39: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 100 [-Wformat-truncation=]
 2427 |      snprintf( bname, sizeof(bname), "%s%d", imgfilebase, imageno++ );
      |                                       ^~     ~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
                 from texactio.c:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output between 2 and 267 bytes into a destination of size 100
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
texactio.c: In function ‘TXConvertFigureToGIF’:
texactio.c:3977:41: warning: ‘%s’ directive output may be truncated writing up to 2047 bytes into a region of size 2040 [-Wformat-truncation=]
 3977 |  snprintf( pgm, sizeof(pgm), "pdf2ps %s %s >>%s 2>&1", fname, fname2,
      |                                         ^~                    ~~~~~~
In file included from /usr/include/stdio.h:867,
                 from texactio.c:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output 17 or more bytes (assuming 2363) into a destination of size 2048
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
texactio.c:3949:44: warning: ‘%s’ directive output may be truncated writing up to 2047 bytes into a region of size 1993 [-Wformat-truncation=]
 3949 |  snprintf( pgm, sizeof(pgm), "%spstogif %s %s figure >>%s 2>&1",
      |                                            ^~
 3950 |     PSPATH, fname, fname2, latex_errname );
      |                    ~~~~~~                   
In file included from /usr/include/stdio.h:867,
                 from texactio.c:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output 71 or more bytes (assuming 2417) into a destination of size 2048
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
texactio.c:3930:44: warning: ‘%s’ directive output may be truncated writing up to 2047 bytes into a region of size 1993 [-Wformat-truncation=]
 3930 |  snprintf( pgm, sizeof(pgm), "%spstogif %s %s figure >>%s 2>&1",
      |                                            ^~
 3931 |     PSPATH, fname, fname2, latex_errname );
      |                    ~~~~~~                   
In file included from /usr/include/stdio.h:867,
                 from texactio.c:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output 71 or more bytes (assuming 2417) into a destination of size 2048
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
texactio.c:3911:49: warning: ‘%s’ directive output may be truncated writing up to 2047 bytes into a region of size 2036 [-Wformat-truncation=]
 3911 |      snprintf( pgm, sizeof(pgm), "/bin/cp -f %s %s", fname, fname2 );
      |                                                 ^~          ~~~~~~
In file included from /usr/include/stdio.h:867,
                 from texactio.c:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output 13 or more bytes (assuming 2060) into a destination of size 2048
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rdaux.c: In function ‘RdAuxFile’:
rdaux.c:163:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
  163 |     fgets( buffer, sizeof(buffer), fpaux );
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rdaux.c: In function ‘WRfromauxfile’:
rdaux.c:391:25: warning: ‘#Node’ directive writing 5 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
  391 |   sprintf( fullname, "%s#Node",
      |                         ^~~~~
In file included from /usr/include/stdio.h:867,
                 from rdaux.c:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 1029 bytes into a destination of size 1024
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:495,
                 from ../../include/sowing.h:24,
                 from userdef.c:10:
In function ‘strncat’,
    inlined from ‘TXAddUserDef’ at userdef.c:167:2:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
environ.c: In function ‘RunLatex’:
environ.c:482:6: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
  482 |      system( pgm );
      |      ^~~~~~~~~~~~~
environ.c:502:6: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
  502 |      system( pgm );
      |      ^~~~~~~~~~~~~
environ.c:510:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
  510 |   system ( pgm );
      |   ^~~~~~~~~~~~~~
environ.c:515:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
  515 |  system( pgm );
      |  ^~~~~~~~~~~~~
environ.c:518:6: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
  518 |      system( pgm );
      |      ^~~~~~~~~~~~~
environ.c:430:33: warning: ‘%s’ directive writing up to 299 bytes into a region of size between 243 and 248 [-Wformat-overflow=]
  430 |      sprintf( pgm, "%s %s.tex >>%s 2>&1 </dev/null",
      |                                 ^~
  431 |        latex_pgm, name, latex_errname );
      |                         ~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
                 from environ.c:6:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 25 or more bytes (assuming 329) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
environ.c:465:45: warning: ‘%s’ directive writing up to 299 bytes into a region of size 237 [-Wformat-overflow=]
  465 |       sprintf( pgm, "pdftops %s.pdf %s.ps >>%s 2>&1",
      |                                             ^~
  466 |         name, name, latex_errname );
      |                     ~~~~~~~~~~~~~            
In file included from /usr/include/stdio.h:867,
                 from environ.c:6:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 25 or more bytes (assuming 324) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
environ.c:453:38: warning: ‘%s’ directive writing up to 299 bytes into a region of size 240 [-Wformat-overflow=]
  453 |   sprintf( pgm, "dvips %s -o %s.ps >>%s 2>&1",
      |                                      ^~
  454 |     name, name, latex_errname );
      |                 ~~~~~~~~~~~~~         
In file included from /usr/include/stdio.h:867,
                 from environ.c:6:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 22 or more bytes (assuming 321) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
environ.c:496:47: warning: ‘%s’ directive writing up to 299 bytes into a region of size 191 [-Wformat-overflow=]
  496 |       sprintf( pgm, "%spstoxbm %s.ps %s.xbm >>%s 2>&1",
      |                                               ^~
  497 |         PSPATH, name, name, latex_errname );
      |                             ~~~~~~~~~~~~~      
In file included from /usr/include/stdio.h:867,
                 from environ.c:6:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 71 or more bytes (assuming 370) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
environ.c:487:47: warning: ‘%s’ directive writing up to 299 bytes into a region of size 191 [-Wformat-overflow=]
  487 |       sprintf( pgm, "%spstogif %s.ps %s.gif >>%s 2>&1",
      |                                               ^~
  488 |         PSPATH, name, name, latex_errname );
      |                             ~~~~~~~~~~~~~      
In file included from /usr/include/stdio.h:867,
                 from environ.c:6:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 71 or more bytes (assuming 370) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
environ.c:507:32: warning: ‘%s’ directive writing up to 255 bytes into a region of size between 237 and 246 [-Wformat-overflow=]
  507 |   sprintf( pgm, "/bin/mv %s.%s %s", name, ext, splitdir );
      |                                ^~              ~~~~~~~~
In file included from /usr/include/stdio.h:867,
                 from environ.c:6:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 11 or more bytes (assuming 275) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
math.c: In function ‘TXProcessDollar’:
math.c:438:35: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 100 [-Wformat-truncation=]
  438 |  snprintf( bname, sizeof(bname), "%s%d", imgfilebase, imageno++ );
      |                                   ^~     ~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
                 from math.c:1:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output between 2 and 267 bytes into a destination of size 100
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/ld: ../../lib/libsowing.a(file.o): in function `SYOpenWritableFile':
file.c:(.text+0x45f): warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp'
bfort.c: In function ‘main’:
bfort.c:552:48: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-truncation=]
  552 |      snprintf( outfilename, MAX_PATH_NAME, "%s/%s",
      |                                                ^~
  553 |         dirname, defoutfilename);
      |                  ~~~~~~~~~~~~~~                 
In file included from /usr/include/stdio.h:867,
                 from ../../include/sowing.h:17,
                 from bfort.c:4:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output between 2 and 2048 bytes into a destination of size 1024
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bfort.c:549:48: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-truncation=]
  549 |      snprintf( outfilename, MAX_PATH_NAME, "%s/%sf.c", dirname, fname );
      |                                                ^~               ~~~~~
In file included from /usr/include/stdio.h:867,
                 from ../../include/sowing.h:17,
                 from bfort.c:4:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output between 5 and 2051 bytes into a destination of size 1024
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/ld: ../../lib/libsowing.a(file.o): in function `SYOpenWritableFile':
file.c:(.text+0x45f): warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp'
file.cc: In function ‘char* SYGetRealpath(const char*, char*)’:
file.cc:84:13: warning: ignoring return value of ‘char* realpath(const char*, char*)’, declared with attribute warn_unused_result [-Wunused-result]
   84 |     realpath( path, rpath );
      |     ~~~~~~~~^~~~~~~~~~~~~~~
=============================================================================================
                Running make install on SOWING; this may take several minutes
=============================================================================================
Executing: /usr/bin/make install
stdout:
/usr/bin/install -c bin/bib2html /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/bib2html
/usr/bin/install -c src/doctext/doctext /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/doctext
/usr/bin/install -c src/doctext/doc2lt /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/doc2lt
/usr/bin/install -c src/tohtml/tohtml  /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/tohtml
if [ "`cd bin && pwd`" != "`cd /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin && pwd`" ] ; then \
    /usr/bin/install -c bin/pstoxbm /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/pstoxbm ; \
    /usr/bin/install -c bin/pstogif /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/pstogif ; \
fi
/usr/bin/install -c src/bfort/bfort /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/bfort
/usr/bin/install -c src/mapnames/mapnames /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/mapnames
INSTALL_DATA ./share/pstoppm.ps /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/pstoppm.ps
INSTALL_DATA ./share/basedefs.txt /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/basedefs.txt
INSTALL_DATA ./share/blueball.gif /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/blueball.gif
INSTALL_DATA ./share/greenball.gif /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/greenball.gif
INSTALL_DATA ./share/purpleball.gif /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/purpleball.gif
INSTALL_DATA ./share/redball.gif /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/redball.gif
INSTALL_DATA ./share/yellowball.gif /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/yellowball.gif
INSTALL_DATA ./share/next.gif /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/next.gif
INSTALL_DATA ./share/up.gif /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/up.gif
INSTALL_DATA ./share/previous.gif /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/previous.gif
INSTALL_DATA ./share/html.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/html.def
INSTALL_DATA ./share/latex.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/latex.def
INSTALL_DATA ./share/nroff.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/nroff.def
INSTALL_DATA ./share/myst.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/myst.def
INSTALL_DATA ./share/refman.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/refman.def
INSTALL_DATA ./share/refman.sty /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/refman.sty
INSTALL_DATA ./share/next.xbm /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/next.xbm
INSTALL_DATA ./share/up.xbm /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/up.xbm
INSTALL_DATA ./share/previous.xbm /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/previous.xbm
INSTALL_DATA ./share/doctext/html.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/doctext/html.def
INSTALL_DATA ./share/doctext/htmlcolor.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/doctext/htmlcolor.def
INSTALL_DATA ./share/doctext/htmltabl.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/doctext/htmltabl.def
INSTALL_DATA ./share/doctext/htmlargtbl.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/doctext/htmlargtbl.def
INSTALL_DATA ./share/doctext/latex.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/doctext/latex.def
INSTALL_DATA ./share/doctext/latexargtbl.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/doctext/latexargtbl.def
INSTALL_DATA ./share/doctext/nroff.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/doctext/nroff.def
INSTALL_DATA ./share/doctext/myst.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/doctext/myst.def
INSTALL_DATA ./share/bfort-base.txt /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/bfort-base.txt
INSTALL_DATA ./share/bfort-mpi.txt /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/bfort-mpi.txt
INSTALL_DATA ./share/bfort-petsc.txt /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/bfort-petsc.txt
INSTALL_DATA ./man/man1/tohtml.1 /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/man/man1/tohtml.1
INSTALL_DATA ./man/man1/doctext.1 /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/man/man1/doctext.1
INSTALL_DATA ./man/man1/bfort.1 /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/man/man1/bfort.1
********Output of running make on SOWING follows *******
checking for ranlib... ranlib
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking for ar... ar
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for c++... c++
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking for virtual path format... VPATH
checking for latex... /usr/bin/latex
checking for gs... /usr/bin/gs
checking for pnmcrop... /usr/bin/pnmcrop
checking for pbmtoxbm... /usr/bin/pbmtoxbm
checking for ppmtogif... /usr/bin/ppmtogif
checking for pnmquant... /usr/bin/pnmquant
checking for perl... /usr/bin/perl
checking how to run the C preprocessor... gcc -E
checking for egrep... /usr/bin/egrep
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking pwd.h usability... yes
checking pwd.h presence... yes
checking for pwd.h... yes
checking for stdlib.h... (cached) yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking for string.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for C/C++ restrict keyword... __restrict
checking for uid_t in sys/types.h... yes
checking for size_t... yes
checking whether time.h and sys/time.h may both be included... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking size of void *... 8
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking for vprintf... yes
checking for _doprnt... no
checking for getcwd... yes
checking for gethostname... yes
checking for getwd... yes
checking for mkdir... yes
checking that mkdir accepts -p... yes
checking for uname... yes
checking for gethostbyname... yes
checking how to run the C++ preprocessor... c++ -E
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for realpath... yes
checking for readlink... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating Makerules
config.status: creating src/Makefile
config.status: creating src/sys/Makefile
config.status: creating src/sys/testing/Makefile
config.status: creating src/tohtml/Makefile
config.status: creating src/tohtml/tohtmlpath.h
config.status: creating src/tohtml/testing/Makefile
config.status: creating bin/pstoxbm
config.status: creating bin/pstogif
config.status: creating bin/bib2html
config.status: creating src/bfort/Makefile
config.status: creating src/bfort/testing/Makefile
config.status: creating src/textfilt/Makefile
config.status: creating src/doctext/Makefile
config.status: creating src/doctext/docpath.h
config.status: creating src/doctext/test/Makefile
config.status: creating src/mapnames/Makefile
config.status: creating src/bib2html/Makefile
config.status: creating docs/Makefile
config.status: creating docs/bfort/Makefile
config.status: creating docs/doctext/Makefile
config.status: creating docs/install/Makefile
config.status: creating docs/tohtml/Makefile
config.status: creating include/patchlevel.h
config.status: creating include/textfilt/textpath.h
config.status: creating src/bfort/testing2/Makefile
config.status: creating include/sowingconfig.h
config.status: executing bib2html commandsfor dir in src docs ; do ( cd $dir && /usr/bin/make clean ) ; done
make[1]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src'
for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; /usr/bin/make clean ) ; done
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/sys'
rm -f *.o *~ 
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/sys'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bfort'
rm -f *.o *~ bfort-old bfort
rm -f bfort\ win32/debug/*
rm -f *.gcda *.gcno *.gcov
(cd testing && /usr/bin/make clean )
make[3]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bfort/testing'
rm -f n1f.c n2f.c tstpgmaf.c tstpgma2f.c tstpgmbf.c tstcf.c tst2cf.c tst3cf.c tstpgmaf90.f90 tstpgmbf90.f90 config.log
make[3]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bfort/testing'
(cd testing2 && /usr/bin/make clean )
make[3]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bfort/testing2'
rm -f tbasef.c tbasef2.c tbasef3.c tbasef4.c tcharf.c tcharf2.c tmpif.c tretf.c tpetscf.c thandlef.c theadhf.c tmp/tbasef.c tmp/tbasef2.c tpetsc.f90 thandle.f90 malformf.c tbaserm.c
rm -rf tmp
make[3]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bfort/testing2'
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bfort'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/tohtml'
/bin/rm -f *.o *~ tohtml tortf
/bin/rm -f tohtml\ win32/debug/*
(cd testing && /usr/bin/make clean )
make[3]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/tohtml/testing'
rm -rf test[1-9] test1[0-9] test2[0-9]
rm -f test[1-9].html
rm -f latex.err *.hux img*.xbm img*.gif
rm -f up.gif previous.gif next.gif
rm -f test1[0-9].html test2[0-9].html test7a.html
rm -f test[0-9].htm test[1-2][0-9].htm
rm -f testf1.ps testf1.gif
rm -f inplace subfiles
rm -f *.ler *.aux *.out
make[3]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/tohtml/testing'
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/tohtml'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/doctext'
/bin/rm -f *.o *~ doctext doc2lt
(cd test ; if [ -s Makefile ] ; then /usr/bin/make clean ; fi )
make[3]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/doctext/test'
rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit
make[3]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/doctext/test'
/bin/rm -f doctext\ win32/debug/*
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/doctext'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/textfilt'
/bin/rm -f *.o *~
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/textfilt'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/mapnames'
/bin/rm -f *.o *~ mapnames ccc test1.html test1.tex test1nc.tex test1nc.html test1.pmap
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/mapnames'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bib2html'
rm -f tout.htm tout-bib.htm
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bib2html'
make[1]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src'
make[1]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs/bfort'
rm -f bfort.pdf \
	*.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs/bfort'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs/doctext'
rm -f doctext.pdf \
	*.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs/doctext'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs/install'
rm -f install.pdf \
	*.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs/install'
make[2]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs/tohtml'
rm -f tohtml.pdf \
	*.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl
make[2]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs/tohtml'
make[1]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/docs'
/bin/rm -f lib/libsowing.a lib/libtfilter.a(cd src/sys && /usr/bin/make )
make[1]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/sys'
gcc  -I../../include -I../../include -O2   -c arch.c
gcc  -I../../include -I../../include -O2   -c txt.c
gcc  -I../../include -I../../include -O2   -c daytime.c
gcc  -I../../include -I../../include -O2   -c file.c
gcc  -I../../include -I../../include -O2   -c tr.c
gcc  -I../../include -I../../include -O2   -c getopts.c
gcc  -I../../include -I../../include -O2   -c rdconfig.c
ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o rdconfig.o
ranlib ../../lib/libsowing.a
make[1]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/sys'
(cd src/tohtml && /usr/bin/make )
make[1]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/tohtml'
gcc  -I../../include -I. -I../../include -O2   -c tohtml.c
gcc  -I../../include -I. -I../../include -O2   -c tex2html.c
gcc  -I../../include -I. -I../../include -O2   -c search.c
gcc  -I../../include -I. -I../../include -O2   -c texactio.c
gcc  -I../../include -I. -I../../include -O2   -c rdaux.c
gcc  -I../../include -I. -I../../include -O2   -c rdindx.c
gcc  -I../../include -I. -I../../include -O2   -c label.c
gcc  -I../../include -I. -I../../include -O2   -c scan.c
gcc  -I../../include -I. -I../../include -O2   -c refmap.c
gcc  -I../../include -I. -I../../include -O2   -c style.c
gcc  -I../../include -I. -I../../include -O2   -c dimen.c
gcc  -I../../include -I. -I../../include -O2   -c userdef.c
gcc  -I../../include -I. -I../../include -O2   -c tabular.c
gcc  -I../../include -I. -I../../include -O2   -c biblio.c
gcc  -I../../include -I. -I../../include -O2   -c environ.c
gcc  -I../../include -I. -I../../include -O2   -c math.c
gcc  -I../../include -I. -I../../include -O2   -c rddefs.c
gcc  -I../../include -I. -I../../include -O2   -c latexinfo.c
gcc  -I../../include -I. -I../../include -O2   -c accent.c
gcc  -I../../include -I. -I../../include -O2   -c simpleif.c
gcc   -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a
make[1]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/tohtml'
(cd src/bfort && /usr/bin/make )
make[1]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bfort'
gcc -DBASEDEF='"/u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/bfort-base.txt"' -DBASEPATH='"/u/pa/bg/ntilton/petsc/arch-linux-c-debug/share"' -I../../include -I../../include -O2   -c bfort.c
gcc -DBASEDEF='"/u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/bfort-base.txt"' -DBASEPATH='"/u/pa/bg/ntilton/petsc/arch-linux-c-debug/share"' -I../../include -I../../include -O2   -c doc.c
gcc   -o bfort bfort.o doc.o ../../lib/libsowing.a
make[1]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/bfort'
(cd src/textfilt && /usr/bin/make )
make[1]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/textfilt'
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c cmdline.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c file.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c instream.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c outstream.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c search.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c maptok.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c textout.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c texthtml.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c textnroff.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c texttex.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c textmyst.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c inutil.cc
c++  -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -O2   -c errhand.cc
ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o textmyst.o inutil.o errhand.o
ranlib ../../lib/libtfilter.a
make[1]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/textfilt'
(cd src/doctext && /usr/bin/make )
make[1]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/doctext'
c++  -I../../include/textfilt -I../../include -I. -I../../include -O2   -c doctext.cc
c++  -I../../include/textfilt -I../../include -I. -I../../include -O2   -c docutil.cc
c++  -I../../include/textfilt -I../../include -I. -I../../include -O2   -c keyword.cc
c++  -I../../include/textfilt -I../../include -I. -I../../include -O2   -c dotfmat.cc
c++  -I../../include/textfilt -I../../include -I. -I../../include -O2   -c incfiles.cc
c++  -I../../include/textfilt -I../../include -I. -I../../include -O2   -c quotefmt.cc
c++  -I../../include/textfilt -I../../include -I. -I../../include -O2   -c textb.cc
c++  -I../../include/textfilt -I../../include -I. -I../../include -O2   -c docfields.cc
c++   -o doctext doctext.o docutil.o keyword.o dotfmat.o \
incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a
c++  -I../../include/textfilt -I../../include -I. -I../../include -O2   -c doc2lt.cc
c++   -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a
make[1]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/doctext'
(cd src/textfilt && /usr/bin/make )
make[1]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/textfilt'
make[1]: Nothing to be done for 'ALL'.
make[1]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/textfilt'
(cd src/mapnames && /usr/bin/make )
make[1]: Entering directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/mapnames'
c++  -I../../include/textfilt -I../../include -O2   -c mapnames.cc
c++   -o mapnames mapnames.o ../../lib/libtfilter.a
make[1]: Leaving directory '/u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing/src/mapnames'file.c: In function ‘SYGetwd’:
file.c:770:5: warning: ignoring return value of ‘getcwd’, declared with attribute warn_unused_result [-Wunused-result]
  770 |     getcwd( path, len );
      |     ^~~~~~~~~~~~~~~~~~~
tohtml.c: In function ‘CopyImgFiles’:
tohtml.c:1126:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1126 |     system( pgm );
      |     ^~~~~~~~~~~~~
tohtml.c:1129:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1129 |     system( pgm );
      |     ^~~~~~~~~~~~~
tohtml.c:1131:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1131 |     system( pgm );
      |     ^~~~~~~~~~~~~
tohtml.c:1134:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1134 |  system( pgm );
      |  ^~~~~~~~~~~~~
tohtml.c:1136:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1136 |  system( pgm );
      |  ^~~~~~~~~~~~~
tohtml.c:1138:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1138 |  system( pgm );
      |  ^~~~~~~~~~~~~
tohtml.c:1140:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1140 |  system( pgm );
      |  ^~~~~~~~~~~~~
tohtml.c:1142:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1142 |  system( pgm );
      |  ^~~~~~~~~~~~~
tex2html.c: In function ‘TX_XBM_size’:
tex2html.c:776:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  776 |     fscanf( f, "#define %s %d\n", lbuf, width );
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tex2html.c:778:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  778 |     fscanf( f, "#define %s %d\n", lbuf, height );
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
texactio.c: In function ‘TXepsfbox’:
texactio.c:3160:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 3160 |   system( tmpbuf );
      |   ^~~~~~~~~~~~~~~~
texactio.c:3204:6: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 3204 |      system( pgm );
      |      ^~~~~~~~~~~~~
texactio.c:3212:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 3212 |       system( pgm );
      |       ^~~~~~~~~~~~~
texactio.c: In function ‘TXref’:
texactio.c:823:40: warning: ‘#Node’ directive output may be truncated writing 5 bytes into a region of size between 1 and 256 [-Wformat-truncation=]
  823 |   snprintf( lfname, sizeof(lfname), "%s#Node", fname );
      |                                        ^~~~~
In file included from /usr/include/stdio.h:867,
                 from texactio.c:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output between 6 and 261 bytes into a destination of size 256
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
texactio.c: In function ‘TXepsfbox’:
texactio.c:3131:21: warning: ‘%s’ directive writing up to 255 bytes into a region of size 254 [-Wformat-overflow=]
 3131 |  sprintf( fname, "./%s", imgoutfile );
      |                     ^~   ~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
                 from texactio.c:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 258 bytes into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
texactio.c:3129:22: warning: ‘%s’ directive writing up to 255 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
 3129 |  sprintf( fname, "%s/%s", splitdir, imgoutfile );
      |                      ^~             ~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
                 from texactio.c:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 512 bytes into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
texactio.c: In function ‘TXbegin’:
texactio.c:2427:39: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 100 [-Wformat-truncation=]
 2427 |      snprintf( bname, sizeof(bname), "%s%d", imgfilebase, imageno++ );
      |                                       ^~     ~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
                 from texactio.c:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output between 2 and 267 bytes into a destination of size 100
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
texactio.c: In function ‘TXConvertFigureToGIF’:
texactio.c:3977:41: warning: ‘%s’ directive output may be truncated writing up to 2047 bytes into a region of size 2040 [-Wformat-truncation=]
 3977 |  snprintf( pgm, sizeof(pgm), "pdf2ps %s %s >>%s 2>&1", fname, fname2,
      |                                         ^~                    ~~~~~~
In file included from /usr/include/stdio.h:867,
                 from texactio.c:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output 17 or more bytes (assuming 2363) into a destination of size 2048
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
texactio.c:3949:44: warning: ‘%s’ directive output may be truncated writing up to 2047 bytes into a region of size 1993 [-Wformat-truncation=]
 3949 |  snprintf( pgm, sizeof(pgm), "%spstogif %s %s figure >>%s 2>&1",
      |                                            ^~
 3950 |     PSPATH, fname, fname2, latex_errname );
      |                    ~~~~~~                   
In file included from /usr/include/stdio.h:867,
                 from texactio.c:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output 71 or more bytes (assuming 2417) into a destination of size 2048
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
texactio.c:3930:44: warning: ‘%s’ directive output may be truncated writing up to 2047 bytes into a region of size 1993 [-Wformat-truncation=]
 3930 |  snprintf( pgm, sizeof(pgm), "%spstogif %s %s figure >>%s 2>&1",
      |                                            ^~
 3931 |     PSPATH, fname, fname2, latex_errname );
      |                    ~~~~~~                   
In file included from /usr/include/stdio.h:867,
                 from texactio.c:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output 71 or more bytes (assuming 2417) into a destination of size 2048
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
texactio.c:3911:49: warning: ‘%s’ directive output may be truncated writing up to 2047 bytes into a region of size 2036 [-Wformat-truncation=]
 3911 |      snprintf( pgm, sizeof(pgm), "/bin/cp -f %s %s", fname, fname2 );
      |                                                 ^~          ~~~~~~
In file included from /usr/include/stdio.h:867,
                 from texactio.c:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output 13 or more bytes (assuming 2060) into a destination of size 2048
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rdaux.c: In function ‘RdAuxFile’:
rdaux.c:163:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
  163 |     fgets( buffer, sizeof(buffer), fpaux );
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rdaux.c: In function ‘WRfromauxfile’:
rdaux.c:391:25: warning: ‘#Node’ directive writing 5 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
  391 |   sprintf( fullname, "%s#Node",
      |                         ^~~~~
In file included from /usr/include/stdio.h:867,
                 from rdaux.c:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 1029 bytes into a destination of size 1024
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:495,
                 from ../../include/sowing.h:24,
                 from userdef.c:10:
In function ‘strncat’,
    inlined from ‘TXAddUserDef’ at userdef.c:167:2:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
environ.c: In function ‘RunLatex’:
environ.c:482:6: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
  482 |      system( pgm );
      |      ^~~~~~~~~~~~~
environ.c:502:6: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
  502 |      system( pgm );
      |      ^~~~~~~~~~~~~
environ.c:510:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
  510 |   system ( pgm );
      |   ^~~~~~~~~~~~~~
environ.c:515:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
  515 |  system( pgm );
      |  ^~~~~~~~~~~~~
environ.c:518:6: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
  518 |      system( pgm );
      |      ^~~~~~~~~~~~~
environ.c:430:33: warning: ‘%s’ directive writing up to 299 bytes into a region of size between 243 and 248 [-Wformat-overflow=]
  430 |      sprintf( pgm, "%s %s.tex >>%s 2>&1 </dev/null",
      |                                 ^~
  431 |        latex_pgm, name, latex_errname );
      |                         ~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
                 from environ.c:6:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 25 or more bytes (assuming 329) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
environ.c:465:45: warning: ‘%s’ directive writing up to 299 bytes into a region of size 237 [-Wformat-overflow=]
  465 |       sprintf( pgm, "pdftops %s.pdf %s.ps >>%s 2>&1",
      |                                             ^~
  466 |         name, name, latex_errname );
      |                     ~~~~~~~~~~~~~            
In file included from /usr/include/stdio.h:867,
                 from environ.c:6:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 25 or more bytes (assuming 324) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
environ.c:453:38: warning: ‘%s’ directive writing up to 299 bytes into a region of size 240 [-Wformat-overflow=]
  453 |   sprintf( pgm, "dvips %s -o %s.ps >>%s 2>&1",
      |                                      ^~
  454 |     name, name, latex_errname );
      |                 ~~~~~~~~~~~~~         
In file included from /usr/include/stdio.h:867,
                 from environ.c:6:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 22 or more bytes (assuming 321) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
environ.c:496:47: warning: ‘%s’ directive writing up to 299 bytes into a region of size 191 [-Wformat-overflow=]
  496 |       sprintf( pgm, "%spstoxbm %s.ps %s.xbm >>%s 2>&1",
      |                                               ^~
  497 |         PSPATH, name, name, latex_errname );
      |                             ~~~~~~~~~~~~~      
In file included from /usr/include/stdio.h:867,
                 from environ.c:6:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 71 or more bytes (assuming 370) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
environ.c:487:47: warning: ‘%s’ directive writing up to 299 bytes into a region of size 191 [-Wformat-overflow=]
  487 |       sprintf( pgm, "%spstogif %s.ps %s.gif >>%s 2>&1",
      |                                               ^~
  488 |         PSPATH, name, name, latex_errname );
      |                             ~~~~~~~~~~~~~      
In file included from /usr/include/stdio.h:867,
                 from environ.c:6:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 71 or more bytes (assuming 370) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
environ.c:507:32: warning: ‘%s’ directive writing up to 255 bytes into a region of size between 237 and 246 [-Wformat-overflow=]
  507 |   sprintf( pgm, "/bin/mv %s.%s %s", name, ext, splitdir );
      |                                ^~              ~~~~~~~~
In file included from /usr/include/stdio.h:867,
                 from environ.c:6:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 11 or more bytes (assuming 275) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
math.c: In function ‘TXProcessDollar’:
math.c:438:35: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 100 [-Wformat-truncation=]
  438 |  snprintf( bname, sizeof(bname), "%s%d", imgfilebase, imageno++ );
      |                                   ^~     ~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
                 from math.c:1:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output between 2 and 267 bytes into a destination of size 100
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/ld: ../../lib/libsowing.a(file.o): in function `SYOpenWritableFile':
file.c:(.text+0x45f): warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp'
bfort.c: In function ‘main’:
bfort.c:552:48: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-truncation=]
  552 |      snprintf( outfilename, MAX_PATH_NAME, "%s/%s",
      |                                                ^~
  553 |         dirname, defoutfilename);
      |                  ~~~~~~~~~~~~~~                 
In file included from /usr/include/stdio.h:867,
                 from ../../include/sowing.h:17,
                 from bfort.c:4:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output between 2 and 2048 bytes into a destination of size 1024
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bfort.c:549:48: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-truncation=]
  549 |      snprintf( outfilename, MAX_PATH_NAME, "%s/%sf.c", dirname, fname );
      |                                                ^~               ~~~~~
In file included from /usr/include/stdio.h:867,
                 from ../../include/sowing.h:17,
                 from bfort.c:4:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output between 5 and 2051 bytes into a destination of size 1024
   67 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   68 |        __bos (__s), __fmt, __va_arg_pack ());
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/ld: ../../lib/libsowing.a(file.o): in function `SYOpenWritableFile':
file.c:(.text+0x45f): warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp'
file.cc: In function ‘char* SYGetRealpath(const char*, char*)’:
file.cc:84:13: warning: ignoring return value of ‘char* realpath(const char*, char*)’, declared with attribute warn_unused_result [-Wunused-result]
   84 |     realpath( path, rpath );
      |     ~~~~~~~~^~~~~~~~~~~~~~~
/usr/bin/install -c bin/bib2html /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/bib2html
/usr/bin/install -c src/doctext/doctext /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/doctext
/usr/bin/install -c src/doctext/doc2lt /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/doc2lt
/usr/bin/install -c src/tohtml/tohtml  /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/tohtml
if [ "`cd bin && pwd`" != "`cd /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin && pwd`" ] ; then \
    /usr/bin/install -c bin/pstoxbm /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/pstoxbm ; \
    /usr/bin/install -c bin/pstogif /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/pstogif ; \
fi
/usr/bin/install -c src/bfort/bfort /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/bfort
/usr/bin/install -c src/mapnames/mapnames /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/mapnames
INSTALL_DATA ./share/pstoppm.ps /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/pstoppm.ps
INSTALL_DATA ./share/basedefs.txt /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/basedefs.txt
INSTALL_DATA ./share/blueball.gif /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/blueball.gif
INSTALL_DATA ./share/greenball.gif /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/greenball.gif
INSTALL_DATA ./share/purpleball.gif /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/purpleball.gif
INSTALL_DATA ./share/redball.gif /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/redball.gif
INSTALL_DATA ./share/yellowball.gif /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/yellowball.gif
INSTALL_DATA ./share/next.gif /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/next.gif
INSTALL_DATA ./share/up.gif /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/up.gif
INSTALL_DATA ./share/previous.gif /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/previous.gif
INSTALL_DATA ./share/html.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/html.def
INSTALL_DATA ./share/latex.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/latex.def
INSTALL_DATA ./share/nroff.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/nroff.def
INSTALL_DATA ./share/myst.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/myst.def
INSTALL_DATA ./share/refman.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/refman.def
INSTALL_DATA ./share/refman.sty /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/refman.sty
INSTALL_DATA ./share/next.xbm /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/next.xbm
INSTALL_DATA ./share/up.xbm /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/up.xbm
INSTALL_DATA ./share/previous.xbm /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/previous.xbm
INSTALL_DATA ./share/doctext/html.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/doctext/html.def
INSTALL_DATA ./share/doctext/htmlcolor.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/doctext/htmlcolor.def
INSTALL_DATA ./share/doctext/htmltabl.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/doctext/htmltabl.def
INSTALL_DATA ./share/doctext/htmlargtbl.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/doctext/htmlargtbl.def
INSTALL_DATA ./share/doctext/latex.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/doctext/latex.def
INSTALL_DATA ./share/doctext/latexargtbl.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/doctext/latexargtbl.def
INSTALL_DATA ./share/doctext/nroff.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/doctext/nroff.def
INSTALL_DATA ./share/doctext/myst.def /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/doctext/myst.def
INSTALL_DATA ./share/bfort-base.txt /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/bfort-base.txt
INSTALL_DATA ./share/bfort-mpi.txt /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/bfort-mpi.txt
INSTALL_DATA ./share/bfort-petsc.txt /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/bfort-petsc.txt
INSTALL_DATA ./man/man1/tohtml.1 /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/man/man1/tohtml.1
INSTALL_DATA ./man/man1/doctext.1 /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/man/man1/doctext.1
INSTALL_DATA ./man/man1/bfort.1 /u/pa/bg/ntilton/petsc/arch-linux-c-debug/share/man/man1/bfort.1********End of Output of running make on SOWING *******
            Not checking for library in Download SOWING: [] because no functions given to check for
=============================================================================================
TESTING: check from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:186)
  Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
       - libDir may be a list of directories
       - libName may be a list of library names
                No functions to check for in library [] []
            Checking for headers [] in Download SOWING: ['/u/pa/bg/ntilton/petsc/arch-linux-c-debug/include', '/usr/lib/x86_64-linux-gnu/openmpi/include', '/usr/lib/x86_64-linux-gnu/openmpi/lib']
=============================================================================================
TESTING: checkVersion from config.packages.sowing(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1191)
  Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version
For sowing unable to find version information since includes and version includes are missing skipping version check
=============================================================================================
TESTING: checkSharedLibrary from config.packages.sowing(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1104)
  By default we don't care about checking if the library is shared
    Checking for program /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/bfort...found
          Defined make macro "BFORT" to "/u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/bfort"
    Checking for program /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/doctext...found
          Defined make macro "DOCTEXT" to "/u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/doctext"
    Checking for program /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/mapnames...found
          Defined make macro "MAPNAMES" to "/u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/mapnames"
    Checking for program /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/bib2html...found
          Defined make macro "BIB2HTML" to "/u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/bib2html"
        Checking bfort version

Executing: /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/bfort -version
stdout: bfort (sowing) release 1.1.26.12 of Date unknown
=============================================================================================
    Running /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/bfort to generate Fortran stubs
=============================================================================================
    child config.packages.sowing took 21.058860 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.revolve(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.revolve(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.revolve took 0.000777 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.radau5(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.radau5(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.radau5 took 0.000425 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.petsc4py(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.petsc4py(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/petsc4py.py:141)
  Adds rules for building petsc4py to PETSc makefiles
            Defined make rule "petsc4py-build" with dependencies "" and code []
            Defined make rule "petsc4py-install" with dependencies "" and code []
            Defined make rule "petsc4pytest" with dependencies "" and code []
    child config.packages.petsc4py took 0.000604 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.pami(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.pami(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.pami took 0.000498 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.opengles(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.opengles(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.opengles took 0.000374 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.opencl(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.opencl(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.opencl took 0.000368 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.mpi4py(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.mpi4py(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.mpi4py took 0.000420 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.mpe(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.mpe(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.mpe took 0.000413 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.memkind(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.memkind(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.memkind took 0.000366 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.libmesh(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.libmesh(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/libmesh.py:69)
            Defined make rule "libmesh-build" with dependencies "" and code []
            Defined make rule "libmesh-install" with dependencies "" and code []
    child config.packages.libmesh took 0.000592 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.moose(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.moose(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.moose took 0.000458 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.libjpeg(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.libjpeg(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.libjpeg took 0.000423 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.gsl(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.gsl(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.gsl took 0.000453 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.ssl(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/ssl.py:58)
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.ssl(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.ssl took 0.000459 seconds
    child config.packages.gmsh took 0.000073 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.gmp(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.gmp(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.gmp took 0.000424 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.mpfr(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.mpfr(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.mpfr took 0.000425 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.giflib(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.giflib(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.giflib took 0.000408 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.cub(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.cub(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.cub took 0.000411 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.ctetgen(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.ctetgen(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.ctetgen took 0.000403 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.concurrencykit(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.concurrencykit(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.concurrencykit took 0.000413 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.cams(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.cams(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.cams took 0.000494 seconds
=============================================================================================
TESTING: locateC2html from config.packages.c2html(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/c2html.py:33)
  Determine location of c2html executable
Looking for default C2html executable
    Checking for program /usr/local/sbin/c2html...not found
    Checking for program /usr/local/bin/c2html...not found
    Checking for program /usr/sbin/c2html...not found
    Checking for program /usr/bin/c2html...not found
    Checking for program /sbin/c2html...not found
    Checking for program /bin/c2html...not found
    Checking for program /usr/games/c2html...not found
    Checking for program /usr/local/games/c2html...not found
    Checking for program /snap/bin/c2html...not found
    Checking for program /u/pa/bg/ntilton/petsc/lib/petsc/bin/win32fe/c2html...not found
    child config.packages.c2html took 0.000410 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.boost(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.boost(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.boost took 0.000442 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.silo(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.silo(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.silo took 0.000411 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.Random123(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.Random123(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.Random123 took 0.000411 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.PARTY(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.PARTY(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.PARTY took 0.000412 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.NVSHMEM(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.NVSHMEM(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.NVSHMEM took 0.000369 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.MatlabEngine(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.MatlabEngine took 0.000363 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.Matlab(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.Matlab(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.Matlab took 0.000354 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.Mathematica(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.Mathematica(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.Mathematica took 0.000393 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.regex(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: checkDependencies from config.packages.regex(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1008)
  Loop over declared dependencies of package and error if any are missing
=============================================================================================
TESTING: configureLibrary from config.packages.regex(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1034)
  Find an installation and check if it can work with PETSc
==================================================================================
          Checking for a functional regex
          Checking for library in Compiler specific search REGEX: []
=============================================================================================
TESTING: check from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:186)
  Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
       - libDir may be a list of directories
       - libName may be a list of library names
              Checking for functions [regexec regcomp regfree] in library [] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char regexec(void);
static void _check_regexec(void) { regexec(); }
char regcomp(void);
static void _check_regcomp(void) { regcomp(); }
char regfree(void);
static void _check_regfree(void) { regfree(); }

int main(void) {
_check_regexec();
_check_regcomp();
_check_regfree();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o -lquadmath -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char regexec(void);
static void _check_regexec(void) { regexec(); }
char regcomp(void);
static void _check_regcomp(void) { regcomp(); }
char regfree(void);
static void _check_regfree(void) { regfree(); }
void dummy(void) {_check_regexec();
_check_regcomp();
_check_regfree();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o -lquadmath -ldl 
          Checking for headers ['regex.h'] in Compiler specific search REGEX: ['/usr/lib/x86_64-linux-gnu/openmpi/include', '/usr/lib/x86_64-linux-gnu/openmpi/lib']
=============================================================================================
TESTING: checkInclude from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:89)
  Checks if a particular include file can be found along particular include paths
Checking for header files ['regex.h'] in ['/usr/lib/x86_64-linux-gnu/openmpi/include', '/usr/lib/x86_64-linux-gnu/openmpi/lib']
                Checking include with compiler flags var CPPFLAGS ['/usr/lib/x86_64-linux-gnu/openmpi/include', '/usr/lib/x86_64-linux-gnu/openmpi/lib']
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <regex.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.packages.MPI  -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/lib /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
Found header files ['regex.h'] in ['/usr/lib/x86_64-linux-gnu/openmpi/include', '/usr/lib/x86_64-linux-gnu/openmpi/lib']
=============================================================================================
TESTING: checkVersion from config.packages.regex(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1191)
  Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version
=============================================================================================
TESTING: checkSharedLibrary from config.packages.regex(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1104)
  By default we don't care about checking if the library is shared
    child config.packages.regex took 0.305149 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.libceed(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.libceed(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.libceed took 0.002545 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.opengl(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.opengl(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.opengl took 0.001442 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.glut(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.glut(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.glut took 0.001386 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.GLVis(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.GLVis(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.GLVis took 0.001551 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.CoDiPack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.CoDiPack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.CoDiPack took 0.001238 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.adblaslapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.adblaslapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.adblaslapack took 0.001180 seconds
    child config.packages.cxxlibs took 0.000021 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.szlib(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.szlib(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.szlib took 0.001207 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.zlib(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.zlib(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.zlib took 0.001191 seconds
    child config.packages.mathlib took 0.000028 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.tetgen(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.tetgen(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.tetgen took 0.001219 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.tchem(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.tchem(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.tchem took 0.001200 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.saws(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.saws(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.saws took 0.001191 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.libpng(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.libpng(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.libpng took 0.001098 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.Triangle(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.Triangle(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.Triangle took 0.000787 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.KS(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.KS(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.KS took 0.000779 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.Chaco(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.Chaco(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.Chaco took 0.000777 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.hdf5(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.hdf5(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.hdf5 took 0.000779 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.ascem-io(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.ascem-io(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.ascem-io took 0.000814 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.pflotran(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.pflotran(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.pflotran took 0.000765 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.SAMRAI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.SAMRAI(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.SAMRAI took 0.000770 seconds
    child config.packages.flibs took 0.000014 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.pnetcdf(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.pnetcdf(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.pnetcdf took 0.000799 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.netcdf(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.netcdf(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.netcdf took 0.000766 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.fblaslapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.fblaslapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.fblaslapack took 0.000813 seconds
=============================================================================================
TESTING: locateCMake from config.packages.cmake(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/cmake.py:54)
Looking for default CMake executable
    Checking for program /usr/local/sbin/cmake...not found
    Checking for program /usr/local/bin/cmake...not found
    Checking for program /usr/sbin/cmake...not found
    Checking for program /usr/bin/cmake...found
              Defined make macro "CMAKE" to "/usr/bin/cmake"
Looking for default CTest executable
    Checking for program /usr/local/sbin/ctest...not found
    Checking for program /usr/local/bin/ctest...not found
    Checking for program /usr/sbin/ctest...not found
    Checking for program /usr/bin/ctest...found
              Defined make macro "CTEST" to "/usr/bin/ctest"
Executing: /usr/bin/cmake --version
stdout:
cmake version 3.16.3
CMake suite maintained and supported by Kitware (kitware.com/cmake).
CMake version found 3.16.3
    child config.packages.cmake took 0.025537 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.unittestcpp(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.unittestcpp(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.unittestcpp took 0.001595 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.muparser(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.muparser(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.muparser took 0.000958 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.hcephes(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.hcephes(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.hcephes took 0.000950 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.googletest(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.googletest(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.googletest took 0.000922 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.opencascade(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.opencascade(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.opencascade took 0.000951 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.combblas(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.combblas(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.combblas took 0.000938 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.cgns(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.cgns(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.cgns took 0.000917 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.amgx(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.amgx(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.amgx took 0.000954 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.alquimia(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.alquimia(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.alquimia took 0.000914 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.exodusii(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.exodusii(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.exodusii took 0.000913 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.eigen(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.eigen(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.eigen took 0.000926 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.grid(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.grid(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.grid took 0.000912 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.metis(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.metis(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.metis took 0.000945 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.pragmatic(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.pragmatic(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.pragmatic took 0.000930 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.parmetis(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.parmetis(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.parmetis took 0.000913 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.netlib-lapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.netlib-lapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.netlib-lapack took 0.000726 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.pthread(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: checkDependencies from config.packages.pthread(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1008)
  Loop over declared dependencies of package and error if any are missing
=============================================================================================
TESTING: configureLibrary from config.packages.pthread(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/pthread.py:19)
   Checks for pthread_barrier_t 
==================================================================================
            Checking for a functional pthread
            Checking for library in Compiler specific search PTHREAD: []
=============================================================================================
TESTING: check from config.libraries(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/libraries.py:186)
  Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"
       - libDir may be a list of directories
       - libName may be a list of library names
                Checking for functions [pthread_create] in library [] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char pthread_create(void);
static void _check_pthread_create(void) { pthread_create(); }

int main(void) {
_check_pthread_create();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o -lquadmath -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.MPI  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char pthread_create(void);
static void _check_pthread_create(void) { pthread_create(); }
void dummy(void) {_check_pthread_create();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o -lquadmath -ldl 
            Checking for headers ['pthread.h'] in Compiler specific search PTHREAD: ['/usr/lib/x86_64-linux-gnu/openmpi/include', '/usr/lib/x86_64-linux-gnu/openmpi/lib']
=============================================================================================
TESTING: checkInclude from config.headers(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/headers.py:89)
  Checks if a particular include file can be found along particular include paths
Checking for header files ['pthread.h'] in ['/usr/lib/x86_64-linux-gnu/openmpi/include', '/usr/lib/x86_64-linux-gnu/openmpi/lib']
                  Checking include with compiler flags var CPPFLAGS ['/usr/lib/x86_64-linux-gnu/openmpi/include', '/usr/lib/x86_64-linux-gnu/openmpi/lib']
Preprocessing source:
#include "confdefs.h"
#include "conffix.h"
#include <pthread.h>

Executing: mpicc -E  -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.packages.MPI  -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/lib /tmp/petsc-7m47ck2r/config.headers/conftest.c 
Preprocess output before filtering:
Preprocess output after filtering:
Found header files ['pthread.h'] in ['/usr/lib/x86_64-linux-gnu/openmpi/include', '/usr/lib/x86_64-linux-gnu/openmpi/lib']
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.pthread/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.packages.pthread/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <pthread.h>

int main(void) {
pthread_barrier_t *a;
(void)a;
  return 0;
}

=============================================================================================
TESTING: checkVersion from config.packages.pthread(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1191)
  Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version
=============================================================================================
TESTING: checkSharedLibrary from config.packages.pthread(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1104)
  By default we don't care about checking if the library is shared
    child config.packages.pthread took 0.365908 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.egads(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.egads(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.egads took 0.001726 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.PTScotch(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.PTScotch(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.PTScotch took 0.001635 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.mmg(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.mmg(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.mmg took 0.001574 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.parmmg(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.parmmg(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.parmmg took 0.001610 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.Zoltan(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.Zoltan(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.Zoltan took 0.001566 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.ADIOS(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.ADIOS(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.ADIOS took 0.001602 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.openmp(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.openmp(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/openmp.py:94)
    child config.packages.openmp took 0.001169 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.viennacl(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.viennacl(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.viennacl took 0.000959 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.zfp(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.zfp(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.zfp took 0.000975 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.ColPack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.ColPack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.ColPack took 0.000992 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.ADOLC(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.ADOLC(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.ADOLC took 0.000967 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.openblas(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.openblas(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.openblas took 0.000967 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.blis(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.blis(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.blis took 0.000956 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.f2cblaslapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.f2cblaslapack took 0.001009 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.BlasLapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: checkDependencies from config.packages.BlasLapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1008)
  Loop over declared dependencies of package and error if any are missing
=============================================================================================
TESTING: configureLibrary from config.packages.BlasLapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/BlasLapack.py:506)
================================================================================
Checking for BLAS and LAPACK in Default compiler libraries
=============================================================================================
TESTING: checkLib from config.packages.BlasLapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/BlasLapack.py:114)
  Checking for BLAS and LAPACK symbols
              Checking for Fortran name mangling underscore on BLAS/LAPACK
                  Checking for functions [ddot_] in library [''] ['libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread']
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char ddot_(void);
static void _check_ddot_(void) { ddot_(); }

int main(void) {
_check_ddot_();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_ddot_':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `ddot_'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_ddot_':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `ddot_'
collect2: error: ld returned 1 exit status
              Checking for no name mangling on BLAS/LAPACK
                  Checking for functions [ddot] in library [''] ['libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread']
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char ddot(void);
static void _check_ddot(void) { ddot(); }

int main(void) {
_check_ddot();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_ddot':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `ddot'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_ddot':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `ddot'
collect2: error: ld returned 1 exit status
              Unknown name mangling in BLAS/LAPACK
================================================================================
Checking for BLAS and LAPACK in Default NEC
=============================================================================================
TESTING: checkLib from config.packages.BlasLapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/BlasLapack.py:114)
  Checking for BLAS and LAPACK symbols
              Checking for Fortran name mangling underscore on BLAS/LAPACK
                  Checking for functions [ddot_] in library ['libblas_sequential.a'] ['libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread']
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char ddot_(void);
static void _check_ddot_(void) { ddot_(); }

int main(void) {
_check_ddot_();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lblas_sequential -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
stdout:
/usr/bin/ld: cannot find -lblas_sequential
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lblas_sequential
collect2: error: ld returned 1 exit status
              Checking for no name mangling on BLAS/LAPACK
                  Checking for functions [ddot] in library ['libblas_sequential.a'] ['libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread']
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char ddot(void);
static void _check_ddot(void) { ddot(); }

int main(void) {
_check_ddot();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lblas_sequential -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
stdout:
/usr/bin/ld: cannot find -lblas_sequential
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lblas_sequential
collect2: error: ld returned 1 exit status
              Unknown name mangling in BLAS/LAPACK
================================================================================
Checking for BLAS and LAPACK in Default NEC
=============================================================================================
TESTING: checkLib from config.packages.BlasLapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/BlasLapack.py:114)
  Checking for BLAS and LAPACK symbols
              Checking for Fortran name mangling underscore on BLAS/LAPACK
                  Checking for functions [ddot_] in library ['libblas_sequential.a'] ['libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread']
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char ddot_(void);
static void _check_ddot_(void) { ddot_(); }

int main(void) {
_check_ddot_();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lblas_sequential -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
stdout:
/usr/bin/ld: cannot find -lblas_sequential
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lblas_sequential
collect2: error: ld returned 1 exit status
              Checking for no name mangling on BLAS/LAPACK
                  Checking for functions [ddot] in library ['libblas_sequential.a'] ['libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread']
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char ddot(void);
static void _check_ddot(void) { ddot(); }

int main(void) {
_check_ddot();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lblas_sequential -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
stdout:
/usr/bin/ld: cannot find -lblas_sequential
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lblas_sequential
collect2: error: ld returned 1 exit status
              Unknown name mangling in BLAS/LAPACK
================================================================================
Checking for BLAS and LAPACK in Default FlexiBLAS
=============================================================================================
TESTING: checkLib from config.packages.BlasLapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/BlasLapack.py:114)
  Checking for BLAS and LAPACK symbols
              Checking for Fortran name mangling underscore on BLAS/LAPACK
                  Checking for functions [ddot_] in library ['libflexiblas.a'] ['libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread']
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char ddot_(void);
static void _check_ddot_(void) { ddot_(); }

int main(void) {
_check_ddot_();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lflexiblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
stdout:
/usr/bin/ld: cannot find -lflexiblas
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lflexiblas
collect2: error: ld returned 1 exit status
              Checking for no name mangling on BLAS/LAPACK
                  Checking for functions [ddot] in library ['libflexiblas.a'] ['libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread']
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char ddot(void);
static void _check_ddot(void) { ddot(); }

int main(void) {
_check_ddot();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lflexiblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
stdout:
/usr/bin/ld: cannot find -lflexiblas
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lflexiblas
collect2: error: ld returned 1 exit status
              Unknown name mangling in BLAS/LAPACK
================================================================================
Checking for BLAS and LAPACK in Default BLIS/AMD-AOCL
=============================================================================================
TESTING: checkLib from config.packages.BlasLapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/BlasLapack.py:114)
  Checking for BLAS and LAPACK symbols
              Checking for Fortran name mangling underscore on BLAS/LAPACK
                  Checking for functions [ddot_] in library ['libblis.a'] ['libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread']
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char ddot_(void);
static void _check_ddot_(void) { ddot_(); }

int main(void) {
_check_ddot_();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lblis -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
stdout:
/usr/bin/ld: cannot find -lblis
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lblis
collect2: error: ld returned 1 exit status
              Checking for no name mangling on BLAS/LAPACK
                  Checking for functions [ddot] in library ['libblis.a'] ['libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread']
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char ddot(void);
static void _check_ddot(void) { ddot(); }

int main(void) {
_check_ddot();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lblis -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
stdout:
/usr/bin/ld: cannot find -lblis
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lblis
collect2: error: ld returned 1 exit status
              Unknown name mangling in BLAS/LAPACK
================================================================================
Checking for BLAS and LAPACK in Default BLIS/AMD-AOCL
=============================================================================================
TESTING: checkLib from config.packages.BlasLapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/BlasLapack.py:114)
  Checking for BLAS and LAPACK symbols
              Checking for Fortran name mangling underscore on BLAS/LAPACK
                  Checking for functions [ddot_] in library ['libblis.a'] ['libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread']
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char ddot_(void);
static void _check_ddot_(void) { ddot_(); }

int main(void) {
_check_ddot_();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lblis -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
stdout:
/usr/bin/ld: cannot find -lblis
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lblis
collect2: error: ld returned 1 exit status
              Checking for no name mangling on BLAS/LAPACK
                  Checking for functions [ddot] in library ['libblis.a'] ['libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread']
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char ddot(void);
static void _check_ddot(void) { ddot(); }

int main(void) {
_check_ddot();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lblis -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
stdout:
/usr/bin/ld: cannot find -lblis
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: cannot find -lblis
collect2: error: ld returned 1 exit status
              Unknown name mangling in BLAS/LAPACK
================================================================================
Checking for BLAS and LAPACK in Default compiler locations
=============================================================================================
TESTING: checkLib from config.packages.BlasLapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/BlasLapack.py:114)
  Checking for BLAS and LAPACK symbols
              Checking for Fortran name mangling underscore on BLAS/LAPACK
                  Checking for functions [ddot_] in library ['libblas.a'] ['libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread']
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char ddot_(void);
static void _check_ddot_(void) { ddot_(); }

int main(void) {
_check_ddot_();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char ddot_(void);
static void _check_ddot_(void) { ddot_(); }
void dummy(void) {_check_ddot_();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
                    Defined "HAVE_LIBBLAS" to "1"
                  Checking for functions [dgetrs_] in library ['liblapack.a'] ['libblas.a', 'libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread']
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char dgetrs_(void);
static void _check_dgetrs_(void) { dgetrs_(); }

int main(void) {
_check_dgetrs_();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -llapack -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char dgetrs_(void);
static void _check_dgetrs_(void) { dgetrs_(); }
void dummy(void) {_check_dgetrs_();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -llapack -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
                    Defined "HAVE_LIBLAPACK" to "1"
                  Checking for functions [dgeev_] in library ['liblapack.a'] ['libblas.a', 'libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread']
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char dgeev_(void);
static void _check_dgeev_(void) { dgeev_(); }

int main(void) {
_check_dgeev_();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -llapack -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char dgeev_(void);
static void _check_dgeev_(void) { dgeev_(); }
void dummy(void) {_check_dgeev_();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -llapack -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
                    Defined "HAVE_LIBLAPACK" to "1"
              Found Fortran mangling on BLAS/LAPACK which is underscore
            Defined "BLASLAPACK_UNDERSCORE" to "1"
=============================================================================================
TESTING: checkMKL from config.packages.BlasLapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/BlasLapack.py:598)
  Check for Intel MKL library
                Checking for functions [mkl_set_num_threads] in library ['liblapack.a', 'libblas.a', 'libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char mkl_set_num_threads(void);
static void _check_mkl_set_num_threads(void) { mkl_set_num_threads(); }

int main(void) {
_check_mkl_set_num_threads();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -llapack -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_mkl_set_num_threads':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `mkl_set_num_threads'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_mkl_set_num_threads':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `mkl_set_num_threads'
collect2: error: ld returned 1 exit status
=============================================================================================
TESTING: checkESSL from config.packages.BlasLapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/BlasLapack.py:653)
  Check for the IBM ESSL library
                Checking for functions [iessl] in library ['liblapack.a', 'libblas.a', 'libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char iessl(void);
static void _check_iessl(void) { iessl(); }

int main(void) {
_check_iessl();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -llapack -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_iessl':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `iessl'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_iessl':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `iessl'
collect2: error: ld returned 1 exit status
=============================================================================================
TESTING: checkPESSL from config.packages.BlasLapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/BlasLapack.py:673)
  Check for the IBM PESSL library - and error out - if used instead of ESSL
                Checking for functions [ipessl] in library ['liblapack.a', 'libblas.a', 'libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char ipessl(void);
static void _check_ipessl(void) { ipessl(); }

int main(void) {
_check_ipessl();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -llapack -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_ipessl':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `ipessl'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_ipessl':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `ipessl'
collect2: error: ld returned 1 exit status
=============================================================================================
TESTING: checkMissing from config.packages.BlasLapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/BlasLapack.py:698)
  Check for missing LAPACK routines
                      Checking for functions [dgelss_ dgerfs_ dgges_ dhgeqz_ dhseqr_ dorgqr_ dormqr_ dstebz_ dstegr_ dstein_ dsteqr_ dstev_ dsytri_ dtgsen_ dtrsen_ dtrtrs_ dgeqp3_] in library ['liblapack.a'] ['libblas.a', 'liblapack.a', 'libblas.a', 'libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread']
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char dgelss_(void);
static void _check_dgelss_(void) { dgelss_(); }
char dgerfs_(void);
static void _check_dgerfs_(void) { dgerfs_(); }
char dgges_(void);
static void _check_dgges_(void) { dgges_(); }
char dhgeqz_(void);
static void _check_dhgeqz_(void) { dhgeqz_(); }
char dhseqr_(void);
static void _check_dhseqr_(void) { dhseqr_(); }
char dorgqr_(void);
static void _check_dorgqr_(void) { dorgqr_(); }
char dormqr_(void);
static void _check_dormqr_(void) { dormqr_(); }
char dstebz_(void);
static void _check_dstebz_(void) { dstebz_(); }
char dstegr_(void);
static void _check_dstegr_(void) { dstegr_(); }
char dstein_(void);
static void _check_dstein_(void) { dstein_(); }
char dsteqr_(void);
static void _check_dsteqr_(void) { dsteqr_(); }
char dstev_(void);
static void _check_dstev_(void) { dstev_(); }
char dsytri_(void);
static void _check_dsytri_(void) { dsytri_(); }
char dtgsen_(void);
static void _check_dtgsen_(void) { dtgsen_(); }
char dtrsen_(void);
static void _check_dtrsen_(void) { dtrsen_(); }
char dtrtrs_(void);
static void _check_dtrtrs_(void) { dtrtrs_(); }
char dgeqp3_(void);
static void _check_dgeqp3_(void) { dgeqp3_(); }

int main(void) {
_check_dgelss_();
_check_dgerfs_();
_check_dgges_();
_check_dhgeqz_();
_check_dhseqr_();
_check_dorgqr_();
_check_dormqr_();
_check_dstebz_();
_check_dstegr_();
_check_dstein_();
_check_dsteqr_();
_check_dstev_();
_check_dsytri_();
_check_dtgsen_();
_check_dtrsen_();
_check_dtrtrs_();
_check_dgeqp3_();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -llapack -lblas -llapack -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char dgelss_(void);
static void _check_dgelss_(void) { dgelss_(); }
char dgerfs_(void);
static void _check_dgerfs_(void) { dgerfs_(); }
char dgges_(void);
static void _check_dgges_(void) { dgges_(); }
char dhgeqz_(void);
static void _check_dhgeqz_(void) { dhgeqz_(); }
char dhseqr_(void);
static void _check_dhseqr_(void) { dhseqr_(); }
char dorgqr_(void);
static void _check_dorgqr_(void) { dorgqr_(); }
char dormqr_(void);
static void _check_dormqr_(void) { dormqr_(); }
char dstebz_(void);
static void _check_dstebz_(void) { dstebz_(); }
char dstegr_(void);
static void _check_dstegr_(void) { dstegr_(); }
char dstein_(void);
static void _check_dstein_(void) { dstein_(); }
char dsteqr_(void);
static void _check_dsteqr_(void) { dsteqr_(); }
char dstev_(void);
static void _check_dstev_(void) { dstev_(); }
char dsytri_(void);
static void _check_dsytri_(void) { dsytri_(); }
char dtgsen_(void);
static void _check_dtgsen_(void) { dtgsen_(); }
char dtrsen_(void);
static void _check_dtrsen_(void) { dtrsen_(); }
char dtrtrs_(void);
static void _check_dtrtrs_(void) { dtrtrs_(); }
char dgeqp3_(void);
static void _check_dgeqp3_(void) { dgeqp3_(); }
void dummy(void) {_check_dgelss_();
_check_dgerfs_();
_check_dgges_();
_check_dhgeqz_();
_check_dhseqr_();
_check_dorgqr_();
_check_dormqr_();
_check_dstebz_();
_check_dstegr_();
_check_dstein_();
_check_dsteqr_();
_check_dstev_();
_check_dsytri_();
_check_dtgsen_();
_check_dtrsen_();
_check_dtrtrs_();
_check_dgeqp3_();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -llapack -lblas -llapack -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
                        Defined "HAVE_LIBLAPACK" to "1"
=============================================================================================
TESTING: checklsame from config.packages.BlasLapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/BlasLapack.py:714)
   Do the BLAS/LAPACK libraries have a valid lsame() function with correct binding.
                Checking for functions [lsame_] in library ['liblapack.a', 'libblas.a', 'libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char lsame_(void);
static void _check_lsame_(void) { lsame_(); }

int main(void) {
_check_lsame_();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -llapack -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char lsame_(void);
static void _check_lsame_(void) { lsame_(); }
void dummy(void) {_check_lsame_();}

Executing: mpif90 -c -o /tmp/petsc-7m47ck2r/config.compilers/conftest.o -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0   /tmp/petsc-7m47ck2r/config.compilers/conftest.F90 
Successful compile:
Source:
      program main
      print*,'testing'
      stop
      end
 
Executing: mpif90  -o /tmp/petsc-7m47ck2r/config.compilers/conftest    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  /tmp/petsc-7m47ck2r/config.compilers/conftest.o /tmp/petsc-7m47ck2r/config.compilers/confc.o  -llapack -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
                  Defined "HAVE_LIBLAPACK" to "1"
                  Defined "HAVE_LIBBLAS" to "1"
                  Defined "HAVE_LIBM" to "1"
                  Defined "HAVE_LIBDL" to "1"
                  Defined "HAVE_LIBMPI_USEMPIF08" to "1"
                  Defined "HAVE_LIBMPI_USEMPI_IGNORE_TKR" to "1"
                  Defined "HAVE_LIBMPI_MPIFH" to "1"
                  Defined "HAVE_LIBMPI" to "1"
                  Defined "HAVE_LIBGFORTRAN" to "1"
                  Defined "HAVE_LIBM" to "1"
                  Defined "HAVE_LIBGFORTRAN" to "1"
                  Defined "HAVE_LIBM" to "1"
                  Defined "HAVE_LIBGCC_S" to "1"
                  Defined "HAVE_LIBQUADMATH" to "1"
                  Defined "HAVE_LIBPTHREAD" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
char *dgeev_(void);
char* testroutine(void){return dgeev_();
}
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.setCompilers/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
char *dgeev_(void);
char* testroutine(void){return dgeev_();
}
Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.setCompilers/libconftest.so  -shared  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -llapack -lblas -llapack -lblas -lm -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
=============================================================================================
TESTING: checkRuntimeIssues from config.packages.BlasLapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/BlasLapack.py:773)
  Determines if BLAS/LAPACK routines use 32 or 64-bit integers
======== Checking running linked program
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>


int main(void) {
FILE *output = fopen("runtimetestoutput","w");
extern double ddot_(const int*,const double*,const int *,const double*,const int*);
                  double x1mkl[4] = {3.0,5.0,7.0,9.0};
                  int one1mkl = 1,nmkl = 2;
                  double dotresultmkl = 0;
                  dotresultmkl = ddot_(&nmkl,x1mkl,&one1mkl,x1mkl,&one1mkl);
                  fprintf(output, "-known-64-bit-blas-indices=%d",dotresultmkl != 34);
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest.o -llapack -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
Testing executable /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest to see if it can be run
Executing: /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest
Running Executable with threads to time it out at 60
Executing: /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest
Checking for 64-bit BLAS/LAPACK indices: result 0
Checking if sdot() returns a float or a double
======== Checking running linked program
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>

int main(void) {
FILE *output = fopen("runtimetestoutput","w");
extern float sdot_(const int*,const float*,const int *,const float*,const int*);
                  float x1[1] = {3.0};
                  int one1 = 1;
                  long long int ione1 = 1;
                  float sdotresult = 0;
                  int blasint64 = 0;

                  if (!blasint64) {
                       sdotresult = sdot_(&one1,x1,&one1,x1,&one1);
                     } else {
                       sdotresult = sdot_((const int*)&ione1,x1,(const int*)&ione1,x1,(const int*)&ione1);
                     }
                  fprintf(output, "--known-sdot-returns-double=%d",sdotresult != 9);

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest.o -llapack -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
Testing executable /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest to see if it can be run
Executing: /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest
Running Executable with threads to time it out at 60
Executing: /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest
Checking for sdot() return double: result 0
Checking if snrm() returns a float or a double
======== Checking running linked program
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>
#include <stdlib.h>
#include <stdio.h>
#include <stddef.h>

int main(void) {
FILE *output = fopen("runtimetestoutput","w");
extern float snrm2_(const int*,const float*,const int*);
                  float x2[1] = {3.0};
                  int one2 = 1;
                  long long int ione2 = 1;
                  float normresult = 0;
                  int blasint64 = 0;

                  if (!blasint64) {
                       normresult = snrm2_(&one2,x2,&one2);
                     } else {
                       normresult = snrm2_((const int*)&ione2,x2,(const int*)&ione2);
                     }
                  fprintf(output, "--known-snrm2-returns-double=%d",normresult != 3);

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest.o -llapack -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
Testing executable /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest to see if it can be run
Executing: /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest
Running Executable with threads to time it out at 60
Executing: /tmp/petsc-7m47ck2r/config.packages.BlasLapack/conftest
Checking for snrm2() return double: result 0
            Checking for functions [bli_thread_set_num_threads] in library ['liblapack.a', 'libblas.a', 'libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char bli_thread_set_num_threads(void);
static void _check_bli_thread_set_num_threads(void) { bli_thread_set_num_threads(); }

int main(void) {
_check_bli_thread_set_num_threads();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -llapack -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_bli_thread_set_num_threads':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `bli_thread_set_num_threads'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_bli_thread_set_num_threads':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `bli_thread_set_num_threads'
collect2: error: ld returned 1 exit status
            Checking for functions [openblas_set_num_threads] in library ['liblapack.a', 'libblas.a', 'libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char openblas_set_num_threads(void);
static void _check_openblas_set_num_threads(void) { openblas_set_num_threads(); }

int main(void) {
_check_openblas_set_num_threads();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -llapack -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_openblas_set_num_threads':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `openblas_set_num_threads'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_openblas_set_num_threads':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `openblas_set_num_threads'
collect2: error: ld returned 1 exit status
            Checking for functions [APL_dgemm] in library ['liblapack.a', 'libblas.a', 'libm.a', '-ldl', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib', '-L/usr/lib/x86_64-linux-gnu/openmpi/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9', '-L/usr/lib/gcc/x86_64-linux-gnu/9', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
char APL_dgemm(void);
static void _check_APL_dgemm(void) { APL_dgemm(); }

int main(void) {
_check_APL_dgemm();
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/config.libraries/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/config.libraries/conftest.o  -llapack -lblas -lm -ldl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -ldl 
stdout:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_APL_dgemm':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `APL_dgemm'
collect2: error: ld returned 1 exit status
Possible ERROR while running linker: exit code 1
stderr:
/usr/bin/ld: /tmp/petsc-7m47ck2r/config.libraries/conftest.o: in function `_check_APL_dgemm':
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:5: undefined reference to `APL_dgemm'
collect2: error: ld returned 1 exit status
=============================================================================================
TESTING: checkVersion from config.packages.BlasLapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1191)
  Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version
=============================================================================================
TESTING: checkSharedLibrary from config.packages.BlasLapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1104)
  By default we don't care about checking if the library is shared
    child config.packages.BlasLapack took 3.894684 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.sundials2(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.sundials2(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.sundials2 took 0.001796 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.spai(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/spai.py:54)
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.spai(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.spai took 0.001700 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.raja(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.raja(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.raja took 0.001609 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.pARMS(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.pARMS(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.pARMS took 0.001559 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.p4est(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.p4est(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.p4est took 0.001599 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.mkl_sparse_optimize(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: checkDependencies from config.packages.mkl_sparse_optimize(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1008)
  Loop over declared dependencies of package and error if any are missing
=============================================================================================
TESTING: configureLibrary from config.packages.mkl_sparse_optimize(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/mkl_sparse_optimize.py:52)
=============================================================================================
TESTING: checkVersion from config.packages.mkl_sparse_optimize(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1191)
  Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version
=============================================================================================
TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1104)
  By default we don't care about checking if the library is shared
    child config.packages.mkl_sparse_optimize took 0.001841 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.mkl_sparse(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: checkDependencies from config.packages.mkl_sparse(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1008)
  Loop over declared dependencies of package and error if any are missing
=============================================================================================
TESTING: configureLibrary from config.packages.mkl_sparse(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/mkl_sparse.py:25)
=============================================================================================
TESTING: checkVersion from config.packages.mkl_sparse(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1191)
  Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version
=============================================================================================
TESTING: checkSharedLibrary from config.packages.mkl_sparse(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1104)
  By default we don't care about checking if the library is shared
    child config.packages.mkl_sparse took 0.001893 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.mkl_cpardiso(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/mkl_cpardiso.py:20)
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.mkl_cpardiso took 0.001534 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.kokkos(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.kokkos(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.kokkos took 0.001268 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.kokkos-kernels(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.kokkos-kernels(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.kokkos-kernels took 0.000991 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.htool(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.htool(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.htool took 0.001009 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.hpl(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.hpl(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.hpl took 0.000993 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.magma(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.magma(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.magma took 0.001008 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.kblas(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.kblas(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.kblas took 0.000985 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.h2opus(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.h2opus(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.h2opus took 0.000979 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.fftw(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.fftw(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.fftw took 0.000975 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.elemental(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.elemental(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.elemental took 0.001009 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.ml(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.ml(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.ml took 0.000832 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.mkl_pardiso(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/mkl_pardiso.py:21)
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.mkl_pardiso(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.mkl_pardiso took 0.000637 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.SuperLU(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.SuperLU(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.SuperLU took 0.000663 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.PaStiX(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.PaStiX(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.PaStiX took 0.000658 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.scalapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.scalapack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.scalapack took 0.000666 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.slate(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.slate(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.slate took 0.000665 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.butterflypack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.butterflypack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.butterflypack took 0.000650 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.strumpack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/strumpack.py:108)
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.strumpack(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.strumpack took 0.000718 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.MUMPS(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/MUMPS.py:71)
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.MUMPS(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.MUMPS took 0.000809 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.MOAB(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.MOAB(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.MOAB took 0.000684 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.SuperLU_DIST(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.SuperLU_DIST(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.SuperLU_DIST took 0.000656 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.SuiteSparse(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.SuiteSparse(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.SuiteSparse took 0.000658 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.Chombo(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/Chombo.py:126)
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.Chombo(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.Chombo took 0.000718 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.hypre(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/hypre.py:190)
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.hypre(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.hypre took 0.000707 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.Trilinos(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.Trilinos(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.Trilinos took 0.000505 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.xSDKTrilinos(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.xSDKTrilinos(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.xSDKTrilinos took 0.000438 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.mstk(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.mstk(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1108)
  Called if --with-packagename=0; does nothing by default
    child config.packages.mstk took 0.000441 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.slepc(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.slepc(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/slepc.py:110)
            Defined make rule "slepc-build" with dependencies "" and code []
            Defined make rule "slepc-install" with dependencies "" and code []
    child config.packages.slepc took 0.000729 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.hpddm(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.hpddm(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/hpddm.py:108)
            Defined make rule "hpddm-build" with dependencies "" and code []
            Defined make rule "hpddm-install" with dependencies "" and code []
    child config.packages.hpddm took 0.000715 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.bamg(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.bamg(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/bamg.py:94)
            Defined make rule "bamg-build" with dependencies "" and code []
            Defined make rule "bamg-install" with dependencies "" and code []
    child config.packages.bamg took 0.000702 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.MFEM(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.MFEM(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/MFEM.py:261)
            Defined make rule "mfem-build" with dependencies "" and code []
            Defined make rule "mfem-install" with dependencies "" and code []
    child config.packages.MFEM took 0.000743 seconds
=============================================================================================
TESTING: consistencyChecks from config.packages.AMReX(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/package.py:1112)
  Checks run on the system and currently installed packages that need to be correct for the package now being configured
=============================================================================================
TESTING: alternateConfigureLibrary from config.packages.AMReX(/u/pa/bg/ntilton/petsc/config/BuildSystem/config/packages/AMReX.py:166)
  Adds rules for building AMReX to PETSc makefiles
            Defined make rule "amrex-build" with dependencies "" and code []
            Defined make rule "amrex-install" with dependencies "" and code []
    child config.packages.AMReX took 0.000699 seconds
=============================================================================================
TESTING: configureRTLDDefault from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:779)
  Check for dynamic library feature
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c:4:15: error: ‘RTLD_DEFAULT’ undeclared here (not in a function)
    4 |  void *ptr =  RTLD_DEFAULT;
      |               ^~~~~~~~~~~~
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c:4:15: error: ‘RTLD_DEFAULT’ undeclared here (not in a function)
    4 |  void *ptr =  RTLD_DEFAULT;
      |               ^~~~~~~~~~~~
Source:
#include "confdefs.h"
#include "conffix.h"
#include <dlfcn.h>
 void *ptr =  RTLD_DEFAULT;

int main(void) {
  return 0;
}

=============================================================================================
TESTING: configurePrefetch from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:548)
  Sees if there are any prefetch functions supported
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <xmmintrin.h>

int main(void) {
void *v = 0;_mm_prefetch((const char*)v,_MM_HINT_NTA);

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -lquadmath -ldl 
            Defined "HAVE_XMMINTRIN_H" to "1"
            Defined "Prefetch(a,b,c)" to "_mm_prefetch((const char*)(a),(c))"
            Defined "PREFETCH_HINT_NTA" to "_MM_HINT_NTA"
            Defined "PREFETCH_HINT_T0" to "_MM_HINT_T0"
            Defined "PREFETCH_HINT_T1" to "_MM_HINT_T1"
            Defined "PREFETCH_HINT_T2" to "_MM_HINT_T2"
=============================================================================================
TESTING: configureUnused from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:623)
  Sees if __attribute((unused)) is supported
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
__attribute((unused)) static int myfunc(__attribute((unused)) void *name){ return 1;}

int main(void) {
int i = 0;
int j = myfunc(&i);
(void)j;
typedef void* atype;
__attribute((unused))  atype a;
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -lquadmath -ldl 
            Defined "UNUSED" to "__attribute((unused))"
=============================================================================================
TESTING: configureDeprecated from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:641)
  Check if __attribute((deprecated)) is supported
Executing: mpicc --help | head -n 80
stdout:
Usage: gcc [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
                           multiple library search directories.
  -print-multi-os-directory Display the relative path to OS libraries.
  -print-sysroot           Display the target libraries directory.
  -print-sysroot-headers-suffix Display the sysroot suffix used to find headers.
  -Wa,<options>            Pass comma-separated <options> on to the assembler.
  -Wp,<options>            Pass comma-separated <options> on to the preprocessor.
  -Wl,<options>            Pass comma-separated <options> on to the linker.
  -Xassembler <arg>        Pass <arg> on to the assembler.
  -Xpreprocessor <arg>     Pass <arg> on to the preprocessor.
  -Xlinker <arg>           Pass <arg> on to the linker.
  -save-temps              Do not delete intermediate files.
  -save-temps=<arg>        Do not delete intermediate files.
  -no-canonical-prefixes   Do not canonicalize paths when building relative
                           prefixes to other gcc components.
  -pipe                    Use pipes rather than intermediate files.
  -time                    Time the execution of each subprocess.
  -specs=<file>            Override built-in specs with the contents of <file>.
  -std=<standard>          Assume that the input sources are for <standard>.
  --sysroot=<directory>    Use <directory> as the root directory for headers
                           and libraries.
  -B <directory>           Add <directory> to the compiler's search paths.
  -v                       Display the programs invoked by the compiler.
  -###                     Like -v but options quoted and commands not executed.
  -E                       Preprocess only; do not compile, assemble or link.
  -S                       Compile only; do not assemble or link.
  -c                       Compile and assemble, but do not link.
  -o <file>                Place the output into <file>.
  -pie                     Create a dynamically linked position independent
                           executable.
  -shared                  Create a shared library.
  -x <language>            Specify the language of the following input files.
                           Permissible languages include: c c++ assembler none
                           'none' means revert to the default behavior of
                           guessing the language based on the file's extension.
Options starting with -g, -f, -m, -O, -W, or --param are automatically
 passed on to the various sub-processes invoked by gcc.  In order to pass
 other options on to these processes the -W<letter> options must be used.
For bug reporting instructions, please see:
<file:///usr/share/doc/gcc-9/README.Bugs>.
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#define DEPRECATED_FUNCTION_BASE(string_literal_why) __attribute__((deprecated(string_literal_why)))
DEPRECATED_FUNCTION_BASE("asdasdadsasd") int myfunc(void) { return 1; }

int main(void) {
  return 0;
}

            configureDeprecated: '__attribute__((deprecated(string_literal_why)))' appears to work
              Defined "DEPRECATED_FUNCTION_BASE(string_literal_why)" to "__attribute__((deprecated(string_literal_why)))"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#define DEPRECATED_TYPEDEF_BASE(string_literal_why) __attribute__((deprecated(string_literal_why)))
typedef int my_int DEPRECATED_TYPEDEF_BASE("asdasdadsasd");

int main(void) {
  return 0;
}

            configureDeprecated: '__attribute__((deprecated(string_literal_why)))' appears to work
              Defined "DEPRECATED_TYPEDEF_BASE(string_literal_why)" to "__attribute__((deprecated(string_literal_why)))"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#define DEPRECATED_ENUM_BASE(string_literal_why) __attribute__((deprecated(string_literal_why)))
enum E { oldval DEPRECATED_ENUM_BASE("asdasdadsasd"), newval };

int main(void) {
  return 0;
}

            configureDeprecated: '__attribute__((deprecated(string_literal_why)))' appears to work
              Defined "DEPRECATED_ENUM_BASE(string_literal_why)" to "__attribute__((deprecated(string_literal_why)))"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#define DEPRECATED_OBJECT_BASE(string_literal_why) __attribute__((deprecated(string_literal_why)))
DEPRECATED_OBJECT_BASE("asdasdadsasd") int x;

int main(void) {
  return 0;
}

            configureDeprecated: '__attribute__((deprecated(string_literal_why)))' appears to work
              Defined "DEPRECATED_OBJECT_BASE(string_literal_why)" to "__attribute__((deprecated(string_literal_why)))"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#define TEST _Pragma("GCC warning "Testing _Pragma"") value

int main(void) {
  return 0;
}

            Defined "DEPRECATED_MACRO_BASE_(why)" to "_Pragma(#why)"
            Defined "DEPRECATED_MACRO_BASE(string_literal_why)" to "PETSC_DEPRECATED_MACRO_BASE_(GCC warning string_literal_why)"
=============================================================================================
TESTING: configureIsatty from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:635)
  Check if the Unix C function isatty() works correctly
       Actually just assumes it does not work correctly on batch systems
            Defined "USE_ISATTY" to "1"
=============================================================================================
TESTING: configureExpect from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:708)
  Sees if the __builtin_expect directive is supported
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
if (__builtin_expect(0,1)) return 1;
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -lquadmath -ldl 
            Defined "HAVE_BUILTIN_EXPECT" to "1"
=============================================================================================
TESTING: configureAlign from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:692)
  Check if __attribute(aligned) is supported
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
struct mystruct {int myint;} __attribute((aligned(16)));
char assert_aligned[(sizeof(struct mystruct)==16)*2-1];

int main(void) {
  return 0;
}

            Defined "ATTRIBUTEALIGNED(size)" to "__attribute((aligned(size)))"
            Defined "HAVE_ATTRIBUTEALIGNED" to "1"
=============================================================================================
TESTING: configureFunctionName from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:715)
  Sees if the compiler supports __func__ or a variant.
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
if (__func__[0] != 'm') return 1;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
if (__func__[0] != 'm') return 1;
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -lquadmath -ldl 
            Defined "FUNCTION_NAME_C" to "__func__"
Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
if (__func__[0] != 'm') return 1;
  return 0;
}

Executing: mpicxx -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.cc 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"

int main(void) {
if (__func__[0] != 'm') return 1;
  return 0;
}

Executing: mpicxx  -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest    -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -lquadmath -ldl 
            Defined "FUNCTION_NAME_CXX" to "__func__"
=============================================================================================
TESTING: configureIntptrt from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:733)
  Determine what to use for uintptr_t and intptr_t
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdint.h>

int main(void) {
int x; uintptr_t i = (uintptr_t)&x; (void)i;
  return 0;
}

              Defined "UINTPTR_T" to "uintptr_t"
              Defined "UINTPTR_T_FMT" to ""#" PRIxPTR"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <stdint.h>

int main(void) {
int x; intptr_t i = (intptr_t)&x; (void)i;
  return 0;
}

              Defined "INTPTR_T" to "intptr_t"
              Defined "INTPTR_T_FMT" to ""#" PRIxPTR"
=============================================================================================
TESTING: configureSolaris from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:785)
  Solaris specific stuff
=============================================================================================
TESTING: configureLinux from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:807)
  Linux specific stuff
            Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1"
=============================================================================================
TESTING: configureDarwin from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:798)
  Log brew configuration for Apple systems
Executing: ['brew', 'config']
stdout: [Errno 2] No such file or directory: 'brew'
=============================================================================================
TESTING: configureWin32 from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:813)
  Win32 non-cygwin specific stuff
              Checking for functions [GetComputerName] in library ['Kernel32.lib'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory
    4 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory
    4 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <windows.h>
static void _check_GetComputerName(void) { GetComputerName(NULL,NULL);; }

int main(void) {
_check_GetComputerName();
  return 0;
}

                  Compile failed inside link

              Checking for functions [GetComputerName] in library ['kernel32'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory
    4 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory
    4 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <windows.h>
static void _check_GetComputerName(void) { GetComputerName(NULL,NULL);; }

int main(void) {
_check_GetComputerName();
  return 0;
}

                  Compile failed inside link

              Checking for functions [GetUserName] in library ['Advapi32.lib'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory
    4 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory
    4 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <windows.h>
static void _check_GetUserName(void) { GetUserName(NULL,NULL);; }

int main(void) {
_check_GetUserName();
  return 0;
}

                  Compile failed inside link

              Checking for functions [GetUserName] in library ['advapi32'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory
    4 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory
    4 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <windows.h>
static void _check_GetUserName(void) { GetUserName(NULL,NULL);; }

int main(void) {
_check_GetUserName();
  return 0;
}

                  Compile failed inside link

              Checking for functions [GetDC] in library ['User32.lib'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory
    4 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory
    4 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <windows.h>
static void _check_GetDC(void) { GetDC(0);; }

int main(void) {
_check_GetDC();
  return 0;
}

                  Compile failed inside link

              Checking for functions [GetDC] in library ['user32'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory
    4 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory
    4 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <windows.h>
static void _check_GetDC(void) { GetDC(0);; }

int main(void) {
_check_GetDC();
  return 0;
}

                  Compile failed inside link

              Checking for functions [CreateCompatibleDC] in library ['Gdi32.lib'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory
    4 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory
    4 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <windows.h>
static void _check_CreateCompatibleDC(void) { CreateCompatibleDC(0);; }

int main(void) {
_check_CreateCompatibleDC();
  return 0;
}

                  Compile failed inside link

              Checking for functions [CreateCompatibleDC] in library ['gdi32'] []
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/config.libraries/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/config.libraries/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory
    4 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory
    4 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
/* Override any gcc2 internal prototype to avoid an error. */
#include <windows.h>
static void _check_CreateCompatibleDC(void) { CreateCompatibleDC(0);; }

int main(void) {
_check_CreateCompatibleDC();
  return 0;
}

                  Compile failed inside link

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/types.h>

int main(void) {
uid_t u;
(void)u;
  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#if defined(PETSC_HAVE_UNISTD_H)
#include <unistd.h>
#endif

int main(void) {
int a=R_OK;
(void)a;
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -lquadmath -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/stat.h>

int main(void) {
int a=0;
if (S_ISDIR(a)){}

  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -lquadmath -ldl 
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c:3:10: fatal error: windows.h: No such file or directory
    3 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c:3:10: fatal error: windows.h: No such file or directory
    3 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <windows.h>

int main(void) {
LARGE_INTEGER a;
DWORD b=a.u.HighPart;

  return 0;
}

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c:3:10: fatal error: windows.h: No such file or directory
    3 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c:3:10: fatal error: windows.h: No such file or directory
    3 | #include <windows.h>
      |          ^~~~~~~~~~~
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <windows.h>
#include <fcntl.h>

int main(void) {
int flags = O_BINARY;
  return 0;
}

            Defined "REPLACE_DIR_SEPARATOR" to "'\\'"
            Defined "DIR_SEPARATOR" to "'/'"
            Defined "DIR" to ""/u/pa/bg/ntilton/petsc""
            Defined make macro "wPETSC_DIR" to "/u/pa/bg/ntilton/petsc"
            Defined "ARCH" to ""arch-linux-c-debug""
=============================================================================================
TESTING: configureCygwinBrokenPipe from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:1252)
  Cygwin version <= 1.7.18 had issues with pipes and long commands invoked from gnu-make
    http://cygwin.com/ml/cygwin/2013-05/msg00340.html 
=============================================================================================
TESTING: configureDefaultArch from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:1268)
=============================================================================================
TESTING: configureScript from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:1285)
  Output a script in the conf directory which will reproduce the configuration
=============================================================================================
TESTING: configureInstall from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:1324)
  Setup the directories for installation
            Defined make rule "print_mesg_after_build" with dependencies "" and code ['-@echo "========================================="', '-@echo "Now to check if the libraries are working do:"', '-@echo "${MAKE_USER} PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} check"', '-@echo "========================================="']
=============================================================================================
TESTING: configureAtoll from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:611)
  Checks if atoll exists
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#define _POSIX_C_SOURCE 200112L
#include <stdlib.h>

int main(void) {
long v = atoll("25");
(void)v;
  return 0;
}

Executing: mpicc  -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -lquadmath -ldl 
            Defined "HAVE_ATOLL" to "1"
=============================================================================================
TESTING: configureCoverage from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:1000)
  
    Configure coverage for all available languages.

    If user did not request coverage, this function does nothing and returns immediatel.
    Therefore the following only apply to the case where the user requested coverage.

    On success:
    - defines PETSC_USE_COVERAGE to 1

    On failure:
    - If no compilers supported the coverage flag, throws RuntimeError
    -
    
            configureCoverage(): coverage was disabled from command line or default
=============================================================================================
TESTING: configureCoverageExecutable from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:1138)
  
    Check that a code-coverage collecting tool exists and is on PATH.

    On success:
    - Adds PETSC_COVERAGE_EXEC make macro containing the full path to the coverage tool executable.

    Raises RuntimeError if:
    - User explicitly requests auto-detection of the coverage tool from command line, and this
      routine fails to guess the suitable tool name.
    - The routine fails to find the tool, and --with-coverage is true
    
            checkCoverage: NOT required to find an executable
            checkCoverage: User did not explicitly set coverage exec (got 'default-auto'), trying to auto-detect based on compiler 'mpicc'
Executing: mpicc --help | head -n 20 
stdout:
Usage: gcc [options] file...
Options:
  -pass-exit-codes         Exit with highest error code from a phase.
  --help                   Display this information.
  --target-help            Display target specific command line options.
  --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...].
                           Display specific types of command line options.
  (Use '-v --help' to display command line options of sub-processes).
  --version                Display compiler version information.
  -dumpspecs               Display all of the built in spec strings.
  -dumpversion             Display the version of the compiler.
  -dumpmachine             Display the compiler's target processor.
  -print-search-dirs       Display the directories in the compiler's search path.
  -print-libgcc-file-name  Display the name of the compiler's companion library.
  -print-file-name=<lib>   Display the full path to library <lib>.
  -print-prog-name=<prog>  Display the full path to compiler component <prog>.
  -print-multiarch         Display the target's normalized GNU triplet, used as
                           a component in the library path.
  -print-multi-directory   Display the root directory for versions of libgcc.
  -print-multi-lib         Display the mapping between command line options and
Detected GNU compiler
            checkCoverage: Searching version string 'gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0' (for compiler 'mpicc') using pattern '[gG][cC\+\-]+[0-9]* \(.+\) (\d+)\.(\d+)\.(\d+)'
            checkCoverage: Found major = 9, minor = 4, patch = 0
            checkCoverage: Checking for coverage tool(s):
- gcov-9
- gcov-9.4
- gcov
    Checking for program gcov-9...not found
    Checking for program /usr/local/sbin/gcov-9...not found
    Checking for program /usr/local/bin/gcov-9...not found
    Checking for program /usr/sbin/gcov-9...not found
    Checking for program /usr/bin/gcov-9...found
                Defined make macro "PETSC_COVERAGE_EXEC" to "/usr/bin/gcov-9"
=============================================================================================
TESTING: configureStrictPetscErrorCode from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:1233)
  
    Enables or disables strict PetscErrorCode checking.

    If --with-strict-petscerrorcode = 1:
    - defines PETSC_USE_STRICT_PETSCERRORCODE to 1

    Else:
    - deletes any prior PETSC_USE_STRICT_PETSCERRORCODE definitions (if they exist)
    
=============================================================================================
TESTING: configureSanitize from PETSc.Configure(/u/pa/bg/ntilton/petsc/config/PETSc/Configure.py:616)
  Checks if fsanitize is supported
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c:8:8: error: expected ‘;’ before ‘int’
    8 | Garbage
      |        ^
      |        ;
......
   11 | int main(void) {
      | ~~~
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c:8:8: error: expected ‘;’ before ‘int’
    8 | Garbage
      |        ^
      |        ;
......
   11 | int main(void) {
      | ~~~     
Source:
#include "confdefs.h"
#include "conffix.h"
#if defined(__has_feature)
#if !__has_feature(address_sanitizer)
Garbage
#endif
#else
Garbage
#endif

int main(void) {
  return 0;
}

              Compile failed inside link

Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
stdout:
/tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c:4:8: error: expected ‘;’ before ‘int’
    4 | Garbage
      |        ^
      |        ;
......
    7 | int main(void) {
      | ~~~
Possible ERROR while running compiler: exit code 1
stderr:
/tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c:4:8: error: expected ‘;’ before ‘int’
    4 | Garbage
      |        ^
      |        ;
......
    7 | int main(void) {
      | ~~~     
Source:
#include "confdefs.h"
#include "conffix.h"
#if !defined(__SANITIZE_ADDRESS__)
Garbage
#endif

int main(void) {
  return 0;
}

              Compile failed inside link

=============================================================================================
Executing: CC -VV
stdout: /bin/sh: 1: CC: not found
          Defined "USE_SOCKET_VIEWER" to "1"
Executing: mpicc -c -o /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.o -I/tmp/petsc-7m47ck2r/config.compilerFlags -I/tmp/petsc-7m47ck2r/config.compilersFortran -I/tmp/petsc-7m47ck2r/config.headers -I/tmp/petsc-7m47ck2r/config.utilities.cacheDetails -I/tmp/petsc-7m47ck2r/config.types -I/tmp/petsc-7m47ck2r/config.utilities.featureTestMacros -I/tmp/petsc-7m47ck2r/config.functions -I/tmp/petsc-7m47ck2r/config.utilities.missing -I/tmp/petsc-7m47ck2r/PETSc.options.sharedLibraries -I/tmp/petsc-7m47ck2r/PETSc.options.scalarTypes -I/tmp/petsc-7m47ck2r/config.packages.MPI -I/tmp/petsc-7m47ck2r/config.packages.pthread -I/tmp/petsc-7m47ck2r/config.setCompilers -I/tmp/petsc-7m47ck2r/config.compilers -I/tmp/petsc-7m47ck2r/config.packages.BlasLapack -I/tmp/petsc-7m47ck2r/config.libraries -I/tmp/petsc-7m47ck2r/PETSc.Configure  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0  /tmp/petsc-7m47ck2r/PETSc.Configure/conftest.c 
Successful compile:
Source:
#include "confdefs.h"
#include "conffix.h"
#include <sys/socket.h>

int main(void) {
setsockopt(0,SOL_SOCKET,SO_REUSEADDR,0,0);
  return 0;
}

          Defined "HAVE_SO_REUSEADDR" to "1"
=============================================================================================
Executing: mpicc -show
stdout: gcc -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi
          Defined "MPICC_SHOW" to ""gcc -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi""
          Defined make macro "CC_FLAGS" to " -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0"
          Defined "HAVE_CXX" to "1"
          Defined make macro "CXXPP_FLAGS" to ""
          Defined make macro "CXX_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC"
          Defined make macro "CXX_LINKER" to "mpicxx"
          Defined make macro "CXX_LINKER_FLAGS" to "   -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0"
          Defined make macro "CPP_FLAGS" to ""
          Defined make macro "PCC" to "mpicc"
          Defined make macro "PCC_FLAGS" to "$(CC_FLAGS)"
          Defined make macro "CC_SUFFIX" to "o"
          Defined make macro "PCC_LINKER" to "mpicc"
          Defined make macro "PCC_LINKER_FLAGS" to "   -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0"
          Defined make macro "CC_LINKER_SUFFIX" to ""
          Defined "USE_FORTRAN_BINDINGS" to "1"
          Defined make macro "FPP_FLAGS" to ""
          Defined make macro "FC_FLAGS" to " -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  "
          Defined make macro "FC_SUFFIX" to "o"
          Defined make macro "FC_LINKER" to "mpif90"
          Defined make macro "FC_LINKER_FLAGS" to "   -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 "
          Defined make macro "FC_MODULE_FLAG" to "-I"
          Defined make macro "FC_MODULE_OUTPUT_FLAG" to "-J"
          Defined make macro "SL_LINKER" to "mpicc"
          Defined make macro "SL_LINKER_FLAGS" to "${PCC_LINKER_FLAGS}"
          Defined make macro "SL_LINKER_SUFFIX" to "so"
          Defined "SLSUFFIX" to ""so""
          Defined make macro "SL_LINKER_LIBS" to "${PETSC_EXTERNAL_LIB_BASIC}"
          Defined make macro "PETSC_LANGUAGE" to "CONLY"
          Defined make macro "PETSC_SCALAR" to "real"
          Defined make macro "PETSC_PRECISION" to "double"
=============================================================================================
          Defined make macro "BLASLAPACK_LIB" to "-llapack -lblas"
          Defined make macro "BLASLAPACK_INCLUDE" to ""
          Defined "HAVE_PTHREAD" to "1"
          Defined make macro "PTHREAD_LIB" to ""
          Defined make macro "PTHREAD_INCLUDE" to ""
          Defined "HAVE_MATHLIB" to "1"
          Defined make macro "MATHLIB_LIB" to "-lm"
          Defined make macro "MATHLIB_INCLUDE" to ""
          Defined "HAVE_REGEX" to "1"
          Defined make macro "REGEX_LIB" to ""
          Defined make macro "REGEX_INCLUDE" to ""
          Defined "HAVE_SOWING" to "1"
          Defined make macro "SOWING_LIB" to ""
          Defined make macro "SOWING_INCLUDE" to ""
          Defined make macro "MPI_LIB" to ""
          Defined make macro "MPI_INCLUDE" to ""
          Defined "HAVE_X" to "1"
          Defined make macro "X_LIB" to "-lX11"
          Defined make macro "X_INCLUDE" to ""
          Defined make macro "PETSC_EXTERNAL_LIB_BASIC" to "-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -llapack -lblas -lm -lX11 -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lpthread -lstdc++ -lquadmath -ldl"
          Defined make macro "PETSC_CC_INCLUDES" to "-I/u/pa/bg/ntilton/petsc/include -I/u/pa/bg/ntilton/petsc/arch-linux-c-debug/include"
          Defined make macro "PETSC_CC_INCLUDES_INSTALL" to "-I/u/pa/bg/ntilton/petsc/include -I/u/pa/bg/ntilton/petsc/arch-linux-c-debug/include"
          Defined make macro "PETSC_FC_INCLUDES" to "-I/u/pa/bg/ntilton/petsc/include -I/u/pa/bg/ntilton/petsc/arch-linux-c-debug/include"
          Defined make macro "PETSC_FC_INCLUDES_INSTALL" to "-I/u/pa/bg/ntilton/petsc/include -I/u/pa/bg/ntilton/petsc/arch-linux-c-debug/include"
          Defined "LIB_DIR" to ""/u/pa/bg/ntilton/petsc/arch-linux-c-debug/lib""
          Defined "USE_SINGLE_LIBRARY" to "1"
          Defined make macro "LIBNAME" to "${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}"
          Defined make macro "SHLIBS" to "libpetsc"
          Defined make macro "PETSC_WITH_EXTERNAL_LIB" to "-Wl,-rpath,/u/pa/bg/ntilton/petsc/arch-linux-c-debug/lib -L/u/pa/bg/ntilton/petsc/arch-linux-c-debug/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lpetsc -llapack -lblas -lm -lX11 -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lpthread -lstdc++ -lquadmath -ldl"
          Defined make macro "PETSC_SYS_LIB" to "${PETSC_WITH_EXTERNAL_LIB}"
          Defined make macro "PETSC_VEC_LIB" to "${PETSC_WITH_EXTERNAL_LIB}"
          Defined make macro "PETSC_MAT_LIB" to "${PETSC_WITH_EXTERNAL_LIB}"
          Defined make macro "PETSC_DM_LIB" to "${PETSC_WITH_EXTERNAL_LIB}"
          Defined make macro "PETSC_KSP_LIB" to "${PETSC_WITH_EXTERNAL_LIB}"
          Defined make macro "PETSC_SNES_LIB" to "${PETSC_WITH_EXTERNAL_LIB}"
          Defined make macro "PETSC_TS_LIB" to "${PETSC_WITH_EXTERNAL_LIB}"
          Defined make macro "PETSC_TAO_LIB" to "${PETSC_WITH_EXTERNAL_LIB}"
          Defined make macro "PETSC_LIB" to "${PETSC_TAO_LIB}"
          Defined make macro "PETSC_LIB_BASIC" to "-lpetsc"
          Defined make macro "CONFIGURE_OPTIONS" to ""
          Defined "HAVE_TAU_PERFSTUBS" to "1"
================================================================================
    child PETSc.Configure took 2.056181 seconds
    child sum 64.296820
    child total 64.322236
**** arch-linux-c-debug/lib/petsc/conf/petscvariables ****
FAST_AR_FLAGS = Scq
AR_FLAGS = cr
AR_ARGFILE = yes
PCC_AT_FILE = 1
C_VERSION = gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
MPICC_SHOW = gcc -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi
Cxx_VERSION = g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
MPICXX_SHOW = g++ -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi
FC_VERSION = GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
MPIFC_SHOW = gfortran -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi
C_DEPFLAGS = -MMD -MP
CXX_DEPFLAGS = -MMD -MP
FC_DEFINE_FLAG = -D
FC_DEPFLAGS = -MMD -MP
wPETSC_DIR = /u/pa/bg/ntilton/petsc
PETSC_COVERAGE_EXEC = /usr/bin/gcov-9
CC_FLAGS =  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0
CXXPP_FLAGS = 
CXX_FLAGS =  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC
CXX_LINKER = mpicxx
CXX_LINKER_FLAGS =    -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0
CPP_FLAGS = 
PCC = mpicc
PCC_FLAGS = $(CC_FLAGS)
CC_SUFFIX = o
PCC_LINKER = mpicc
PCC_LINKER_FLAGS =    -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0
CC_LINKER_SUFFIX = 
FPP_FLAGS = 
FC_FLAGS =  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  
FC_SUFFIX = o
FC_LINKER = mpif90
FC_LINKER_FLAGS =    -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 
FC_MODULE_FLAG = -I
FC_MODULE_OUTPUT_FLAG = -J
SL_LINKER = mpicc
SL_LINKER_FLAGS = ${PCC_LINKER_FLAGS}
SL_LINKER_SUFFIX = so
SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC}
PETSC_LANGUAGE = CONLY
PETSC_SCALAR = real
PETSC_PRECISION = double
BLASLAPACK_LIB = -llapack -lblas
BLASLAPACK_INCLUDE = 
PTHREAD_LIB = 
PTHREAD_INCLUDE = 
MATHLIB_LIB = -lm
MATHLIB_INCLUDE = 
REGEX_LIB = 
REGEX_INCLUDE = 
SOWING_LIB = 
SOWING_INCLUDE = 
MPI_LIB = 
MPI_INCLUDE = 
X_LIB = -lX11
X_INCLUDE = 
PETSC_EXTERNAL_LIB_BASIC = -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -llapack -lblas -lm -lX11 -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lpthread -lstdc++ -lquadmath -ldl
PETSC_CC_INCLUDES = -I/u/pa/bg/ntilton/petsc/include -I/u/pa/bg/ntilton/petsc/arch-linux-c-debug/include
PETSC_CC_INCLUDES_INSTALL = -I/u/pa/bg/ntilton/petsc/include -I/u/pa/bg/ntilton/petsc/arch-linux-c-debug/include
PETSC_FC_INCLUDES = -I/u/pa/bg/ntilton/petsc/include -I/u/pa/bg/ntilton/petsc/arch-linux-c-debug/include
PETSC_FC_INCLUDES_INSTALL = -I/u/pa/bg/ntilton/petsc/include -I/u/pa/bg/ntilton/petsc/arch-linux-c-debug/include
LIBNAME = ${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}
SHLIBS = libpetsc
PETSC_WITH_EXTERNAL_LIB = -Wl,-rpath,/u/pa/bg/ntilton/petsc/arch-linux-c-debug/lib -L/u/pa/bg/ntilton/petsc/arch-linux-c-debug/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lpetsc -llapack -lblas -lm -lX11 -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lpthread -lstdc++ -lquadmath -ldl
PETSC_SYS_LIB = ${PETSC_WITH_EXTERNAL_LIB}
PETSC_VEC_LIB = ${PETSC_WITH_EXTERNAL_LIB}
PETSC_MAT_LIB = ${PETSC_WITH_EXTERNAL_LIB}
PETSC_DM_LIB = ${PETSC_WITH_EXTERNAL_LIB}
PETSC_KSP_LIB = ${PETSC_WITH_EXTERNAL_LIB}
PETSC_SNES_LIB = ${PETSC_WITH_EXTERNAL_LIB}
PETSC_TS_LIB = ${PETSC_WITH_EXTERNAL_LIB}
PETSC_TAO_LIB = ${PETSC_WITH_EXTERNAL_LIB}
PETSC_LIB = ${PETSC_TAO_LIB}
PETSC_LIB_BASIC = -lpetsc
CONFIGURE_OPTIONS = 
MKDIR = /usr/bin/mkdir -p
SHELL = /usr/bin/bash
SED = /usr/bin/sed
SEDINPLACE = /usr/bin/sed -i
MV = /usr/bin/mv
CP = /usr/bin/cp
GREP = /usr/bin/grep
RM = /usr/bin/rm -f
DIFF = /usr/bin/diff -w
PYTHON = /usr/bin/python3
M4 = /usr/bin/m4
CC = mpicc
CPP = mpicc -E
CXX = mpicxx
CXXPP = mpicxx -E
FC = mpif90
FPP = mpif90 -E
AR = /usr/bin/ar
RANLIB = /usr/bin/ranlib
AR_LIB_SUFFIX = a
LD_SHARED = mpicc
DYNAMICLINKER = mpicc
CC_LINKER_SLFLAG = -Wl,-rpath,
FC_LINKER_SLFLAG = -Wl,-rpath,
CLANGUAGE = C
EXEFLAGS = -Wl,-export-dynamic
GIT = git
HG = hg
PREFIXDIR = /u/pa/bg/ntilton/petsc/arch-linux-c-debug
PETSC_SCALAR_SIZE = 64
PETSC_INDEX_SIZE = 32
MAKE = /usr/bin/make
MAKE_USER = make
OMAKE_PRINTDIR = /usr/bin/make --print-directory
OMAKE = /usr/bin/make --no-print-directory
MAKE_PAR_OUT_FLG = --output-sync=recurse
MAKE_NP = 54
MAKE_TEST_NP = 44
MAKE_LOAD = 148.8
NPMAX = 112
SONAME_FUNCTION = $(1).$(SL_LINKER_SUFFIX).$(2)
SL_LINKER_FUNCTION =  -shared  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))
BUILDSHAREDLIB = yes
GDB = /usr/bin/gdb
DSYMUTIL = true
MPIEXEC = /usr/bin/mpiexec --oversubscribe
HOSTNAME = hostname
PING = ping
MPIEXEC_TAIL = 
PYTHON_EXE = "/usr/bin/python3"
CMAKE = /usr/bin/cmake
CTEST = /usr/bin/ctest
BISON = /usr/bin/bison
PDFLATEX = /usr/bin/pdflatex
BFORT = /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/bfort
DOCTEXT = /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/doctext
MAPNAMES = /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/mapnames
BIB2HTML = /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/bib2html
PETSC_TEST_OPTIONS = -checkfunctionlist -use_gpu_aware_mpi 0
**** arch-linux-c-debug/lib/petsc/conf/petscrules ****
print_mesg_after_build: 
	-@echo "========================================="
	-@echo "Now to check if the libraries are working do:"
	-@echo "${MAKE_USER} PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} check"
	-@echo "========================================="

libc: ${LIBNAME}(${OBJSC})

libcxx: ${LIBNAME}(${OBJSCXX})

libcu: ${LIBNAME}(${OBJSCU})

libf: ${OBJSF}
	-${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF}

shared_arch: shared_linux

amrex-build: 

amrex-install: 

mfem-build: 

mfem-install: 

slepc-build: 

slepc-install: 

bamg-build: 

bamg-install: 

hpddm-build: 

hpddm-install: 

libmesh-build: 

libmesh-install: 

petsc4py-build: 

petsc4py-install: 

petsc4pytest: 

**** arch-linux-c-debug/include/petscconf.h ****
#if !defined(INCLUDED_UNKNOWN)
#define INCLUDED_UNKNOWN

#define PETSC_ARCH "arch-linux-c-debug"
#define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size)))
#define PETSC_BLASLAPACK_UNDERSCORE 1
#define PETSC_CLANGUAGE_C 1
#define PETSC_CXX_RESTRICT __restrict
#define PETSC_DEPRECATED_ENUM_BASE(string_literal_why) __attribute__((deprecated(string_literal_why)))
#define PETSC_DEPRECATED_FUNCTION_BASE(string_literal_why) __attribute__((deprecated(string_literal_why)))
#define PETSC_DEPRECATED_MACRO_BASE(string_literal_why) PETSC_DEPRECATED_MACRO_BASE_(GCC warning string_literal_why)
#define PETSC_DEPRECATED_MACRO_BASE_(why) _Pragma(#why)
#define PETSC_DEPRECATED_OBJECT_BASE(string_literal_why) __attribute__((deprecated(string_literal_why)))
#define PETSC_DEPRECATED_TYPEDEF_BASE(string_literal_why) __attribute__((deprecated(string_literal_why)))
#define PETSC_DIR "/u/pa/bg/ntilton/petsc"
#define PETSC_DIR_SEPARATOR '/'
#define PETSC_FORTRAN_CHARLEN_T size_t
#define PETSC_FORTRAN_TYPE_INITIALIZE  = -2
#define PETSC_FUNCTION_NAME_C __func__
#define PETSC_FUNCTION_NAME_CXX __func__
#define PETSC_HAVE_ACCESS 1
#define PETSC_HAVE_ATOLL 1
#define PETSC_HAVE_ATTRIBUTEALIGNED 1
#define PETSC_HAVE_BUILTIN_EXPECT 1
#define PETSC_HAVE_BZERO 1
#define PETSC_HAVE_C99_COMPLEX 1
#define PETSC_HAVE_CLOCK 1
#define PETSC_HAVE_CXX 1
#define PETSC_HAVE_CXX_ATOMIC 1
#define PETSC_HAVE_CXX_COMPLEX 1
#define PETSC_HAVE_CXX_COMPLEX_FIX 1
#define PETSC_HAVE_CXX_DIALECT_CXX11 1
#define PETSC_HAVE_CXX_DIALECT_CXX14 1
#define PETSC_HAVE_CXX_DIALECT_CXX17 1
#define PETSC_HAVE_DLADDR 1
#define PETSC_HAVE_DLCLOSE 1
#define PETSC_HAVE_DLERROR 1
#define PETSC_HAVE_DLFCN_H 1
#define PETSC_HAVE_DLOPEN 1
#define PETSC_HAVE_DLSYM 1
#define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1
#define PETSC_HAVE_DRAND48 1
#define PETSC_HAVE_DYNAMIC_LIBRARIES 1
#define PETSC_HAVE_ERF 1
#define PETSC_HAVE_EXECUTABLE_EXPORT 1
#define PETSC_HAVE_FCNTL_H 1
#define PETSC_HAVE_FENV_H 1
#define PETSC_HAVE_FE_VALUES 1
#define PETSC_HAVE_FLOAT_H 1
#define PETSC_HAVE_FORK 1
#define PETSC_HAVE_FORTRAN_FLUSH 1
#define PETSC_HAVE_FORTRAN_FREE_LINE_LENGTH_NONE 1
#define PETSC_HAVE_FORTRAN_TYPE_STAR 1
#define PETSC_HAVE_FORTRAN_UNDERSCORE 1
#define PETSC_HAVE_GETCWD 1
#define PETSC_HAVE_GETDOMAINNAME 1
#define PETSC_HAVE_GETHOSTBYNAME 1
#define PETSC_HAVE_GETHOSTNAME 1
#define PETSC_HAVE_GETPAGESIZE 1
#define PETSC_HAVE_GETRUSAGE 1
#define PETSC_HAVE_IMMINTRIN_H 1
#define PETSC_HAVE_INTTYPES_H 1
#define PETSC_HAVE_ISINF 1
#define PETSC_HAVE_ISNAN 1
#define PETSC_HAVE_ISNORMAL 1
#define PETSC_HAVE_LGAMMA 1
#define PETSC_HAVE_LINUX 1
#define PETSC_HAVE_LOG2 1
#define PETSC_HAVE_LSEEK 1
#define PETSC_HAVE_MALLOC_H 1
#define PETSC_HAVE_MEMMOVE 1
#define PETSC_HAVE_MKSTEMP 1
#define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE OMP
#define PETSC_HAVE_MPIIO 1
#define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1
#define PETSC_HAVE_MPI_COMBINER_DUP 1
#define PETSC_HAVE_MPI_COMBINER_NAMED 1
#define PETSC_HAVE_MPI_COUNT 1
#define PETSC_HAVE_MPI_F90MODULE 1
#define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1
#define PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW 1
#define PETSC_HAVE_MPI_GET_ACCUMULATE 1
#define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1
#define PETSC_HAVE_MPI_INIT_THREAD 1
#define PETSC_HAVE_MPI_INT64_T 1
#define PETSC_HAVE_MPI_LONG_DOUBLE 1
#define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1
#define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1
#define PETSC_HAVE_MPI_ONE_SIDED 1
#define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1
#define PETSC_HAVE_MPI_REDUCE_LOCAL 1
#define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1
#define PETSC_HAVE_MPI_RGET 1
#define PETSC_HAVE_MPI_WIN_CREATE 1
#define PETSC_HAVE_NANOSLEEP 1
#define PETSC_HAVE_NETDB_H 1
#define PETSC_HAVE_NETINET_IN_H 1
#define PETSC_HAVE_NO_FINITE_MATH_ONLY 1
#define PETSC_HAVE_OPENMPI 1
#define PETSC_HAVE_POPEN 1
#define PETSC_HAVE_POSIX_MEMALIGN 1
#define PETSC_HAVE_PTHREAD 1
#define PETSC_HAVE_PTHREAD_MUTEX 1
#define PETSC_HAVE_PWD_H 1
#define PETSC_HAVE_RAND 1
#define PETSC_HAVE_READLINK 1
#define PETSC_HAVE_REALPATH 1
#define PETSC_HAVE_REAL___FLOAT128 1
#define PETSC_HAVE_REGEX 1
#define PETSC_HAVE_RTLD_GLOBAL 1
#define PETSC_HAVE_RTLD_LAZY 1
#define PETSC_HAVE_RTLD_LOCAL 1
#define PETSC_HAVE_RTLD_NOW 1
#define PETSC_HAVE_SETJMP_H 1
#define PETSC_HAVE_SHMGET 1
#define PETSC_HAVE_SLEEP 1
#define PETSC_HAVE_SNPRINTF 1
#define PETSC_HAVE_SOCKET 1
#define PETSC_HAVE_SOWING 1
#define PETSC_HAVE_SO_REUSEADDR 1
#define PETSC_HAVE_STDATOMIC_H 1
#define PETSC_HAVE_STDINT_H 1
#define PETSC_HAVE_STRCASECMP 1
#define PETSC_HAVE_STRINGS_H 1
#define PETSC_HAVE_STRUCT_SIGACTION 1
#define PETSC_HAVE_SYS_PARAM_H 1
#define PETSC_HAVE_SYS_PROCFS_H 1
#define PETSC_HAVE_SYS_RESOURCE_H 1
#define PETSC_HAVE_SYS_SOCKET_H 1
#define PETSC_HAVE_SYS_TIMES_H 1
#define PETSC_HAVE_SYS_TIME_H 1
#define PETSC_HAVE_SYS_TYPES_H 1
#define PETSC_HAVE_SYS_UTSNAME_H 1
#define PETSC_HAVE_SYS_WAIT_H 1
#define PETSC_HAVE_TAU_PERFSTUBS 1
#define PETSC_HAVE_TGAMMA 1
#define PETSC_HAVE_TIME 1
#define PETSC_HAVE_TIME_H 1
#define PETSC_HAVE_UNAME 1
#define PETSC_HAVE_UNISTD_H 1
#define PETSC_HAVE_USLEEP 1
#define PETSC_HAVE_VA_COPY 1
#define PETSC_HAVE_VSNPRINTF 1
#define PETSC_HAVE_X 1
#define PETSC_HAVE_XMMINTRIN_H 1
#define PETSC_INTPTR_T intptr_t
#define PETSC_INTPTR_T_FMT "#" PRIxPTR
#define PETSC_IS_COLORING_MAX USHRT_MAX
#define PETSC_IS_COLORING_VALUE_TYPE short
#define PETSC_IS_COLORING_VALUE_TYPE_F integer2
#define PETSC_LEVEL1_DCACHE_LINESIZE 64
#define PETSC_LIB_DIR "/u/pa/bg/ntilton/petsc/arch-linux-c-debug/lib"
#define PETSC_MAX_PATH_LEN 4096
#define PETSC_MEMALIGN 16
#define PETSC_MPICC_SHOW "gcc -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi"
#define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT
#define PETSC_OMAKE "/usr/bin/make --no-print-directory"
#define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA
#define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0
#define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1
#define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2
#define PETSC_PYTHON_EXE "/usr/bin/python3"
#define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c))
#define PETSC_REPLACE_DIR_SEPARATOR '\\'
#define PETSC_SIGNAL_CAST  
#define PETSC_SIZEOF_INT 4
#define PETSC_SIZEOF_LONG 8
#define PETSC_SIZEOF_LONG_LONG 8
#define PETSC_SIZEOF_SIZE_T 8
#define PETSC_SIZEOF_VOID_P 8
#define PETSC_SLSUFFIX "so"
#define PETSC_UINTPTR_T uintptr_t
#define PETSC_UINTPTR_T_FMT "#" PRIxPTR
#define PETSC_UNUSED __attribute((unused))
#define PETSC_USE_AVX512_KERNELS 1
#define PETSC_USE_BACKWARD_LOOP 1
#define PETSC_USE_CTABLE 1
#define PETSC_USE_DEBUG 1
#define PETSC_USE_DEBUGGER "gdb"
#define PETSC_USE_DMLANDAU_2D 1
#define PETSC_USE_FORTRAN_BINDINGS 1
#define PETSC_USE_INFO 1
#define PETSC_USE_ISATTY 1
#define PETSC_USE_LOG 1
#define PETSC_USE_PROC_FOR_SIZE 1
#define PETSC_USE_REAL_DOUBLE 1
#define PETSC_USE_SHARED_LIBRARIES 1
#define PETSC_USE_SINGLE_LIBRARY 1
#define PETSC_USE_SOCKET_VIEWER 1
#define PETSC_USE_VISIBILITY_C 1
#define PETSC_USE_VISIBILITY_CXX 1
#define PETSC_USING_64BIT_PTR 1
#define PETSC_USING_F2003 1
#define PETSC_USING_F90FREEFORM 1
#define PETSC_VERSION_BRANCH_GIT "release"
#define PETSC_VERSION_DATE_GIT "2025-01-22 02:47:46 +0000"
#define PETSC_VERSION_GIT "v3.22.2-42-ge76e20974b3"
#define PETSC__BSD_SOURCE 1
#define PETSC__DEFAULT_SOURCE 1
#define PETSC__GNU_SOURCE 1
#endif
**** arch-linux-c-debug/include/petscfix.h ****
#if !defined(INCLUDED_UNKNOWN)
#define INCLUDED_UNKNOWN

#if defined(__cplusplus)
extern "C" {
}
#else
#endif
#endif
**** arch-linux-c-debug/include/petscpkg_version.h ****
#if !defined(INCLUDED_UNKNOWN)
#define INCLUDED_UNKNOWN

#define PETSC_PKG_MPI_VERSION_MAJOR 3
#define PETSC_PKG_MPI_VERSION_MINOR 0
#define PETSC_PKG_MPI_VERSION_SUBMINOR 0
#define PETSC_PKG_MPI_VERSION_ PETSC_PKG_MPI_VERSION_EQ

#define PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR)         \
      ((PETSC_PKG_MPI_VERSION_MAJOR    == (MAJOR)) &&          \
       (PETSC_PKG_MPI_VERSION_MINOR    == (MINOR)) &&          \
       (PETSC_PKG_MPI_VERSION_SUBMINOR == (SUBMINOR)))

#define PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR)         \
       (PETSC_PKG_MPI_VERSION_MAJOR  < (MAJOR) ||              \
        (PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR) &&             \
         (PETSC_PKG_MPI_VERSION_MINOR  < (MINOR) ||            \
          (PETSC_PKG_MPI_VERSION_MINOR == (MINOR) &&           \
           (PETSC_PKG_MPI_VERSION_SUBMINOR  < (SUBMINOR))))))

#define PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR)         \
       (PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) ||      \
        PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR))

#define PETSC_PKG_MPI_VERSION_GT(MAJOR,MINOR,SUBMINOR)         \
       ( 0 == PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR))

#define PETSC_PKG_MPI_VERSION_GE(MAJOR,MINOR,SUBMINOR)         \
       ( 0 == PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR))

#define PETSC_PKG_OPENMPI_VERSION_MAJOR 4
#define PETSC_PKG_OPENMPI_VERSION_MINOR 0
#define PETSC_PKG_OPENMPI_VERSION_SUBMINOR 3
#define PETSC_PKG_OPENMPI_VERSION_ PETSC_PKG_OPENMPI_VERSION_EQ

#define PETSC_PKG_OPENMPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR)         \
      ((PETSC_PKG_OPENMPI_VERSION_MAJOR    == (MAJOR)) &&          \
       (PETSC_PKG_OPENMPI_VERSION_MINOR    == (MINOR)) &&          \
       (PETSC_PKG_OPENMPI_VERSION_SUBMINOR == (SUBMINOR)))

#define PETSC_PKG_OPENMPI_VERSION_LT(MAJOR,MINOR,SUBMINOR)         \
       (PETSC_PKG_OPENMPI_VERSION_MAJOR  < (MAJOR) ||              \
        (PETSC_PKG_OPENMPI_VERSION_MAJOR == (MAJOR) &&             \
         (PETSC_PKG_OPENMPI_VERSION_MINOR  < (MINOR) ||            \
          (PETSC_PKG_OPENMPI_VERSION_MINOR == (MINOR) &&           \
           (PETSC_PKG_OPENMPI_VERSION_SUBMINOR  < (SUBMINOR))))))

#define PETSC_PKG_OPENMPI_VERSION_LE(MAJOR,MINOR,SUBMINOR)         \
       (PETSC_PKG_OPENMPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) ||      \
        PETSC_PKG_OPENMPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR))

#define PETSC_PKG_OPENMPI_VERSION_GT(MAJOR,MINOR,SUBMINOR)         \
       ( 0 == PETSC_PKG_OPENMPI_VERSION_LE(MAJOR,MINOR,SUBMINOR))

#define PETSC_PKG_OPENMPI_VERSION_GE(MAJOR,MINOR,SUBMINOR)         \
       ( 0 == PETSC_PKG_OPENMPI_VERSION_LT(MAJOR,MINOR,SUBMINOR))

#endif

  Attempting to save configure hash file: arch-linux-c-debug/lib/petsc/conf/configure-hash
  Saved configure hash file: arch-linux-c-debug/lib/petsc/conf/configure-hash
Configure Actions
   These are the actions performed by configure on the filesystem
---------------------------------------------------------------------------------------------
Framework:
  Directory creation : Created the external packages directory: /u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages
  RDict update       : Substitutions were stored in RDict with parent None
  File creation      : Created makefile configure header arch-linux-c-debug/lib/petsc/conf/petscvariables
  File creation      : Created makefile configure header arch-linux-c-debug/lib/petsc/conf/petscrules
  File creation      : Created configure header arch-linux-c-debug/include/petscconf.h
  File creation      : Created C specific configure header arch-linux-c-debug/include/petscfix.h
  File creation      : Created configure pkg header arch-linux-c-debug/include/petscpkg_version.h
SOWING:
  Download           : Downloaded SOWING into /u/pa/bg/ntilton/petsc/arch-linux-c-debug/externalpackages/git.sowing
  Install            : Installed SOWING into /u/pa/bg/ntilton/petsc/arch-linux-c-debug
PETSc:
  File creation      : Generated Fortran stubs
  Build              : Set default architecture to arch-linux-c-debug in lib/petsc/conf/petscvariables
  File creation      : Created arch-linux-c-debug/lib/petsc/conf/reconfigure-arch-linux-c-debug.py for automatic reconfiguration
Compilers:
  C Compiler:         mpicc  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 
    Version: gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
  C++ Compiler:         mpicxx  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0  -std=gnu++17 -fPIC 
    Version: g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
  Fortran Compiler:         mpif90  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0  
    Version: GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
Linkers:
  Shared linker:   mpicc  -shared  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0
  Dynamic linker:   mpicc  -shared  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0
  Libraries linked against:   -lquadmath -ldl 
Intel instruction sets found on CPU:
  AVX2
  AVX512: avx512f avx512dq avx512cd avx512bw avx512vl avx512_vnni
BlasLapack:
  Libraries:  -llapack -lblas
  Unknown if this uses OpenMP (try export OMP_NUM_THREADS=<1-4> yourprogram -log_view) 
  uses 4 byte integers
MPI:
  Version:    3
  mpiexec: /usr/bin/mpiexec
  Implementation: openmpi
  OMPI_VERSION: 4.0.3
X:
  Libraries:  -lX11
python:
  Executable: /usr/bin/python3
pthread:
cmake:
  Version:    3.16.3
  Executable: /usr/bin/cmake
regex:
bison:
  Version:    3.5
  Executable: /usr/bin/bison
sowing:
  Version:    1.1.26.12
  Executable: /u/pa/bg/ntilton/petsc/arch-linux-c-debug/bin/bfort
PETSc:
  Language used to compile PETSc: C
  PETSC_ARCH: arch-linux-c-debug
  PETSC_DIR: /u/pa/bg/ntilton/petsc
  Prefix: <inplace installation>
  Scalar type: real
  Precision: double
  Support for __float128
  Integer size: 4 bytes
  Single library: yes
  Shared libraries: yes
  Memory alignment from malloc(): 16 bytes
  Using GNU make: /usr/bin/make
xxx=======================================================================================xxx
 Configure stage complete. Now build PETSc libraries with:
   make PETSC_DIR=/u/pa/bg/ntilton/petsc PETSC_ARCH=arch-linux-c-debug all
xxx=======================================================================================xxx
================================================================================
Finishing configure run at Thu, 23 Jan 2025 17:52:41 -0700
================================================================================