<div dir="ltr"><div dir="ltr">On Fri, Jan 17, 2025 at 10:49 AM MIGUEL MOLINOS PEREZ <<a href="mailto:mmolinos@us.es">mmolinos@us.es</a>> wrote:<br></div><div class="gmail_quote gmail_quote_container"><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div>
<div>Now the error is in the call to <span style="color:rgb(0,0,0)">DMSwarmMigrate</span><font color="#000000"><span> </span></font></div></div></blockquote><div><br></div><div>You have almost certainly overwritten memory somewhere. Can you use vlagrind or Address Sanitizer?</div><div><br></div><div> Thanks,</div><div><br></div><div> Matt</div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div>
<div><font color="#000000"><span>Miguel</span></font></div>
<div><br>
</div>
<div>[0]PETSC ERROR: ------------------------------------------------------------------------</div>
<div>[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range</div>
<div>[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger</div>
<div>[0]PETSC ERROR: or see <a href="https://urldefense.us/v3/__https://petsc.org/release/faq/*valgrind__;Iw!!G_uCfscf7eWS!ZR4qEUJFauPbLf2xjFCCNpzP81yruUvFjLgv04TV-z8lOzwKA--hL3qV6DsYz5Y5lMba6urrC0JQwfeJkbHf$" target="_blank">https://petsc.org/release/faq/#valgrind</a> and <a href="https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!ZR4qEUJFauPbLf2xjFCCNpzP81yruUvFjLgv04TV-z8lOzwKA--hL3qV6DsYz5Y5lMba6urrC0JQwcFiO800$" target="_blank">https://petsc.org/release/faq/</a></div>
<div>[0]PETSC ERROR: --------------------- Stack Frames ------------------------------------</div>
<div>[0]PETSC ERROR: The line numbers in the error traceback are not always exact.</div>
<div>[0]PETSC ERROR: #1 DMSwarmDataBucketGetSizes() at /Users/migmolper/petsc/src/dm/impls/swarm/data_bucket.c:297</div>
<div>[0]PETSC ERROR: #2 DMSwarmMigrate_CellDMScatter() at /Users/migmolper/petsc/src/dm/impls/swarm/swarm_migrate.c:201</div>
<div>[0]PETSC ERROR: #3 DMSwarmMigrate() at /Users/migmolper/petsc/src/dm/impls/swarm/swarm.c:1349</div>
<div>[0]PETSC ERROR: #4 main() at /Users/migmolper/DMD/driver-tasting-SOLERA.cpp:41</div>
<div>application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0</div>
<div><br>
<blockquote type="cite">
<div>On Jan 17, 2025, at 4:22 PM, Matthew Knepley <<a href="mailto:knepley@gmail.com" target="_blank">knepley@gmail.com</a>> wrote:</div>
<br>
<div>
<div dir="ltr" style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
<div dir="ltr">On Fri, Jan 17, 2025 at 10:08 AM MIGUEL MOLINOS PEREZ <<a href="mailto:mmolinos@us.es" target="_blank">mmolinos@us.es</a>> wrote:<br>
</div>
<div class="gmail_quote">
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div>
<div>Thank you Matt, this the piece of code I use to change the coordinates of the DM obtained using:</div>
</div>
</blockquote>
<div><br>
</div>
<div>You do not need the call to DMSetCoordinates(). What happens when you remove it?</div>
<div><br>
</div>
<div> Thanks,</div>
<div><br>
</div>
<div> Matt</div>
<div> </div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div>
<div><br>
</div>
<div>
<div style="color:rgb(212,212,212);background-color:rgb(30,30,30);font-family:Menlo,Monaco,"Courier New",monospace;line-height:18px;white-space:pre-wrap">
<div><span style="color:rgb(220,220,170)">DMSwarmGetCellDM</span>(<span style="color:rgb(156,220,254)">Simulation</span>.<span style="color:rgb(156,220,254)">atomistic_data</span>, &<span style="color:rgb(156,220,254)">bounding_cell</span>);</div>
<div><span style="color:rgb(220,220,170)">DMGetApplicationContext</span>(<span style="color:rgb(156,220,254)">bounding_cell</span>, &<span style="color:rgb(156,220,254)">background_mesh</span>);</div>
</div>
</div>
<div><br>
</div>
<div>Thanks,</div>
<div>Miguel</div>
<div><br>
</div>
<div style="background-color:rgb(30,30,30);font-family:Menlo,Monaco,"Courier New",monospace;line-height:18px;white-space:pre-wrap">
<div style="color:rgb(212,212,212)"><span style="color:rgb(106,153,85)">/************************************************************************/</span></div>
<font color="#d4d4d4"><br>
</font>
<div style="color:rgb(212,212,212)"><span style="color:rgb(78,201,176)">PetscErrorCode</span>
<span style="color:rgb(220,220,170)">Volumetric_Expansion</span>(<span style="color:rgb(78,201,176)">DM</span>
<span style="color:rgb(156,220,254)">dm</span>, <span style="color:rgb(86,156,214)">
const</span> <span style="color:rgb(78,201,176)">Eigen</span>::<span style="color:rgb(78,201,176)">Matrix3d</span><span style="color:rgb(86,156,214)">&</span>
<span style="color:rgb(156,220,254)">F</span>) {</div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(78,201,176)">PetscErrorCode</span>
<span style="color:rgb(156,220,254)">ierr</span>;</div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(78,201,176)">Vec</span>
<span style="color:rgb(156,220,254)">coordinates</span>;</div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(78,201,176)">PetscScalar</span><span style="color:rgb(86,156,214)">*</span>
<span style="color:rgb(156,220,254)">coordArray</span>;</div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(78,201,176)">PetscInt</span>
<span style="color:rgb(156,220,254)">xs</span>, <span style="color:rgb(156,220,254)">
ys</span>, <span style="color:rgb(156,220,254)">zs</span>, <span style="color:rgb(156,220,254)">
xm</span>, <span style="color:rgb(156,220,254)">ym</span>, <span style="color:rgb(156,220,254)">
zm</span>, <span style="color:rgb(156,220,254)">i</span>, <span style="color:rgb(156,220,254)">
j</span>, <span style="color:rgb(156,220,254)">k</span>;</div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(78,201,176)">PetscInt</span>
<span style="color:rgb(156,220,254)">dim</span>, <span style="color:rgb(156,220,254)">
M</span>, <span style="color:rgb(156,220,254)">N</span>, <span style="color:rgb(156,220,254)">
P</span>;</div>
<font color="#d4d4d4"><br>
</font>
<div style="color:rgb(212,212,212)"><span style="color:rgb(156,220,254)">PetscFunctionBegin</span>;</div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(106,153,85)">// Get DMDA information</span></div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(156,220,254)">ierr</span> =
<span style="color:rgb(220,220,170)">DMDAGetInfo</span>(<span style="color:rgb(156,220,254)">dm</span>, &<span style="color:rgb(156,220,254)">dim</span>, &<span style="color:rgb(156,220,254)">M</span>, &<span style="color:rgb(156,220,254)">N</span>,
&<span style="color:rgb(156,220,254)">P</span>, <span style="color:rgb(86,156,214)">
NULL</span>, <span style="color:rgb(86,156,214)">NULL</span>, <span style="color:rgb(86,156,214)">
NULL</span>, <span style="color:rgb(86,156,214)">NULL</span>, <span style="color:rgb(86,156,214)">
NULL</span>, <span style="color:rgb(86,156,214)">NULL</span>,</div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(86,156,214)">NULL</span>,
<span style="color:rgb(86,156,214)">NULL</span>, <span style="color:rgb(86,156,214)">
NULL</span>);</div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(220,220,170)">CHKERRQ</span>(<span style="color:rgb(156,220,254)">ierr</span>);</div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(156,220,254)">ierr</span> =
<span style="color:rgb(220,220,170)">DMDAGetCorners</span>(<span style="color:rgb(156,220,254)">dm</span>, &<span style="color:rgb(156,220,254)">xs</span>, &<span style="color:rgb(156,220,254)">ys</span>, &<span style="color:rgb(156,220,254)">zs</span>,
&<span style="color:rgb(156,220,254)">xm</span>, &<span style="color:rgb(156,220,254)">ym</span>, &<span style="color:rgb(156,220,254)">zm</span>);</div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(220,220,170)">CHKERRQ</span>(<span style="color:rgb(156,220,254)">ierr</span>);</div>
<font color="#d4d4d4"><br>
</font>
<div style="color:rgb(212,212,212)"><span style="color:rgb(106,153,85)">// Get the coordinates vector</span></div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(156,220,254)">ierr</span> =
<span style="color:rgb(220,220,170)">DMGetCoordinates</span>(<span style="color:rgb(156,220,254)">dm</span>, &<span style="color:rgb(156,220,254)">coordinates</span>);</div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(220,220,170)">CHKERRQ</span>(<span style="color:rgb(156,220,254)">ierr</span>);</div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(156,220,254)">ierr</span> =
<span style="color:rgb(220,220,170)">VecGetArray</span>(<span style="color:rgb(156,220,254)">coordinates</span>, &<span style="color:rgb(156,220,254)">coordArray</span>);</div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(220,220,170)">CHKERRQ</span>(<span style="color:rgb(156,220,254)">ierr</span>);</div>
<font color="#d4d4d4"><br>
</font>
<div style="color:rgb(212,212,212)"><span style="color:rgb(106,153,85)">// Update the coordinates based on the desired transformation</span></div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(197,134,192)">for</span> (<span style="color:rgb(156,220,254)">k</span> =
<span style="color:rgb(156,220,254)">zs</span>; <span style="color:rgb(156,220,254)">
k</span> < <span style="color:rgb(156,220,254)">zs</span> + <span style="color:rgb(156,220,254)">
zm</span>; <span style="color:rgb(156,220,254)">k</span>++) {</div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(197,134,192)">for</span> (<span style="color:rgb(156,220,254)">j</span> =
<span style="color:rgb(156,220,254)">ys</span>; <span style="color:rgb(156,220,254)">
j</span> < <span style="color:rgb(156,220,254)">ys</span> + <span style="color:rgb(156,220,254)">
ym</span>; <span style="color:rgb(156,220,254)">j</span>++) {</div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(197,134,192)">for</span> (<span style="color:rgb(156,220,254)">i</span> =
<span style="color:rgb(156,220,254)">xs</span>; <span style="color:rgb(156,220,254)">
i</span> < <span style="color:rgb(156,220,254)">xs</span> + <span style="color:rgb(156,220,254)">
xm</span>; <span style="color:rgb(156,220,254)">i</span>++) {</div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(78,201,176)">PetscInt</span>
<span style="color:rgb(156,220,254)">idx</span> =</div>
<div style="color:rgb(212,212,212)">((<span style="color:rgb(156,220,254)">k</span> *
<span style="color:rgb(156,220,254)">N</span> + <span style="color:rgb(156,220,254)">
j</span>) * <span style="color:rgb(156,220,254)">M</span> + <span style="color:rgb(156,220,254)">
i</span>) * <span style="color:rgb(156,220,254)">dim</span>;<span style="color:rgb(106,153,85)"> // Index for the i, j, k point</span></div>
<div><font color="#d4d4d4"></font><span style="color:rgb(156,220,254)">coordArray</span><font color="#d4d4d4">[</font><span style="color:rgb(156,220,254)">idx</span><font color="#d4d4d4">] =
</font><span style="color:rgb(156,220,254)">coordArray</span><font color="#d4d4d4">[</font><span style="color:rgb(156,220,254)">idx</span><font color="#d4d4d4">] *
</font><font color="#b5cea8"><span>F(0,0)</span></font><font color="#d4d4d4">;</font><span style="color:rgb(106,153,85)"> // Update x-coordinate</span></div>
<div><span style="color:rgb(212,212,212)"><span style="color:rgb(156,220,254)">coordArray</span>[<span style="color:rgb(156,220,254)">idx</span> +
<span style="color:rgb(181,206,168)">1</span>] = <span style="color:rgb(156,220,254)">
coordArray</span>[<span style="color:rgb(156,220,254)">idx</span> + <span style="color:rgb(181,206,168)">
1</span>] * </span><font color="#b5cea8"><span>F(1,1)</span></font><font color="#d4d4d4">;</font><span style="color:rgb(106,153,85)"> // Update y-coordinate</span></div>
<div><span style="color:rgb(212,212,212)"><span style="color:rgb(156,220,254)">coordArray</span>[<span style="color:rgb(156,220,254)">idx</span> +
<span style="color:rgb(181,206,168)">2</span>] = <span style="color:rgb(156,220,254)">
coordArray</span>[<span style="color:rgb(156,220,254)">idx</span> + <span style="color:rgb(181,206,168)">
2</span>] * </span><font color="#b5cea8"><span>F(2,2)</span></font><font color="#d4d4d4">;</font><span style="color:rgb(106,153,85)"> // Update z-coordinate</span></div>
<div style="color:rgb(212,212,212)">}</div>
<div style="color:rgb(212,212,212)">}</div>
<div style="color:rgb(212,212,212)">}</div>
<font color="#d4d4d4"><br>
</font>
<div style="color:rgb(212,212,212)"><span style="color:rgb(106,153,85)">// Restore the coordinates vector</span></div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(156,220,254)">ierr</span> =
<span style="color:rgb(220,220,170)">VecRestoreArray</span>(<span style="color:rgb(156,220,254)">coordinates</span>, &<span style="color:rgb(156,220,254)">coordArray</span>);</div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(220,220,170)">CHKERRQ</span>(<span style="color:rgb(156,220,254)">ierr</span>);</div>
<font color="#d4d4d4"><br>
</font>
<div style="color:rgb(212,212,212)"><span style="color:rgb(106,153,85)">// Set the updated coordinates back to the DMDA</span></div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(156,220,254)">ierr</span> =
<span style="color:rgb(220,220,170)">DMSetCoordinates</span>(<span style="color:rgb(156,220,254)">dm</span>,
<span style="color:rgb(156,220,254)">coordinates</span>);</div>
<div style="color:rgb(212,212,212)"><span style="color:rgb(220,220,170)">CHKERRQ</span>(<span style="color:rgb(156,220,254)">ierr</span>);</div>
<font color="#d4d4d4"><br>
</font>
<div style="color:rgb(212,212,212)"><span style="color:rgb(220,220,170)">PetscFunctionReturn</span>(<span style="color:rgb(181,206,168)">0</span>);</div>
<div style="color:rgb(212,212,212)">}</div>
<font color="#d4d4d4"><br>
</font>
<div style="color:rgb(212,212,212)"><span style="color:rgb(106,153,85)">/************************************************************************/</span></div>
</div>
<div><br>
<blockquote type="cite">
<div>On 17 Jan 2025, at 16:00, Matthew Knepley <<a href="mailto:knepley@gmail.com" target="_blank">knepley@gmail.com</a>> wrote:</div>
<br>
<div>
<div dir="ltr">
<div dir="ltr">On Fri, Jan 17, 2025 at 9:45 AM MIGUEL MOLINOS PEREZ <<a href="mailto:mmolinos@us.es" target="_blank">mmolinos@us.es</a>> wrote:<br>
</div>
<div class="gmail_quote">
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div>
<div dir="auto">
<div>I tried what you suggested, but still I got this error message. Maybe I should use main release?</div>
</div>
</div>
</blockquote>
<div><br>
</div>
<div>No. I suspect something is wrong with the way you are setting coordinates. Can you share the code?</div>
<div><br>
</div>
<div> Thanks,</div>
<div><br>
</div>
<div> Matt</div>
<div> </div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div>
<div dir="auto">
<div>Miguel</div>
<div>
<div style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
<br>
</div>
<div style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
<div>[4]PETSC ERROR: ------------------------------------------------------------------------</div>
<div>[4]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range</div>
<div>[4]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger</div>
<div>[4]PETSC ERROR: or see<span> </span><a href="https://urldefense.us/v3/__https://petsc.org/release/faq/*valgrind__;Iw!!G_uCfscf7eWS!ZR4qEUJFauPbLf2xjFCCNpzP81yruUvFjLgv04TV-z8lOzwKA--hL3qV6DsYz5Y5lMba6urrC0JQwfeJkbHf$" target="_blank">https://petsc.org/release/faq/#valgrind</a><span> </span>and<span> </span><a href="https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!ZR4qEUJFauPbLf2xjFCCNpzP81yruUvFjLgv04TV-z8lOzwKA--hL3qV6DsYz5Y5lMba6urrC0JQwcFiO800$" target="_blank">https://petsc.org/release/faq/</a></div>
<div>[4]PETSC ERROR: --------------------- Stack Frames ------------------------------------</div>
<div>[4]PETSC ERROR: The line numbers in the error traceback are not always exact.</div>
<div>[4]PETSC ERROR: #1 Pack_PetscReal_1_0() at /Users/migmolper/petsc/src/vec/is/sf/impls/basic/sfpack.c:373</div>
<div>[4]PETSC ERROR: #2 PetscSFLinkPackRootData_Private() at /Users/migmolper/petsc/src/vec/is/sf/impls/basic/sfpack.c:932</div>
<div>[4]PETSC ERROR: #3 PetscSFLinkPackRootData() at /Users/migmolper/petsc/src/vec/is/sf/impls/basic/sfpack.c:966</div>
<div>[4]PETSC ERROR: #4 PetscSFBcastBegin_Basic() at /Users/migmolper/petsc/src/vec/is/sf/impls/basic/sfbasic.c:357</div>
<div>[4]PETSC ERROR: #5 PetscSFBcastWithMemTypeBegin() at /Users/migmolper/petsc/src/vec/is/sf/interface/sf.c:1513</div>
<div>[4]PETSC ERROR: #6 VecScatterBegin_Internal() at /Users/migmolper/petsc/src/vec/is/sf/interface/vscat.c:70</div>
<div>[4]PETSC ERROR: #7 VecScatterBegin() at /Users/migmolper/petsc/src/vec/is/sf/interface/vscat.c:1316</div>
<div>[4]PETSC ERROR: #8 DMGlobalToLocalBegin_DA() at /Users/migmolper/petsc/src/dm/impls/da/dagtol.c:15</div>
<div>[4]PETSC ERROR: #9 DMGlobalToLocalBegin() at /Users/migmolper/petsc/src/dm/interface/dm.c:2844</div>
<div>[4]PETSC ERROR: #10 DMGetCoordinatesLocalSetUp() at /Users/migmolper/petsc/src/dm/interface/dmcoordinates.c:565</div>
<div>[4]PETSC ERROR: #11 DMGetCoordinatesLocal() at /Users/migmolper/petsc/src/dm/interface/dmcoordinates.c:599</div>
<div>[4]PETSC ERROR: #12 _DMLocatePoints_DMDARegular_IS() at /Users/migmolper/DMD/SOLERA/Atoms/Atom.cpp:531</div>
<div>[4]PETSC ERROR: #13 DMLocatePoints_DMDARegular() at /Users/migmolper/DMD/SOLERA/Atoms/Atom.cpp:586</div>
<div>[4]PETSC ERROR: #14 DMLocatePoints() at /Users/migmolper/petsc/src/dm/interface/dmcoordinates.c:1194</div>
<div>[4]PETSC ERROR: #15 DMSwarmMigrate_CellDMScatter() at /Users/migmolper/petsc/src/dm/impls/swarm/swarm_migrate.c:219</div>
<div>[4]PETSC ERROR: #16 DMSwarmMigrate() at /Users/migmolper/petsc/src/dm/impls/swarm/swarm.c:1349</div>
<div>[4]PETSC ERROR: #17 main() at /Users/migmolper/DMD/driver-tasting-SOLERA.cpp:41</div>
<br>
<br>
<br>
</div>
</div>
<div>
<blockquote type="cite">
<div>On Jan 15, 2025, at 4:56 PM, MIGUEL MOLINOS PEREZ <<a href="mailto:mmolinos@us.es" target="_blank">mmolinos@us.es</a>> wrote:</div>
<br>
<div>
<div>Thank you Matt for the useful info. I’ll try your idea.
<div><br>
</div>
<div>Miguel</div>
<div>
<div><br>
<blockquote type="cite">
<div>On 15 Jan 2025, at 16:48, Matthew Knepley <<a href="mailto:knepley@gmail.com" target="_blank">knepley@gmail.com</a>> wrote:</div>
<br>
<div>
<div dir="ltr" style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
<div dir="ltr">On Wed, Jan 15, 2025 at 10:41 AM MIGUEL MOLINOS PEREZ <<a href="mailto:mmolinos@us.es" target="_blank">mmolinos@us.es</a>> wrote:</div>
<div class="gmail_quote">
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<div>Thank you Matt.</div>
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<div>Yes, I am getting the "CellDM" from the DMSwarm.</div>
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<div>1. I have recently overhauled this functionality because it was not flexible enough for the plasma simulation we do. Thus main and release work differently.</div>
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<div>Nice to hear that. Should I move to main?</div>
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<div>The changes allow you to have several cell DMs. I want to bin particles in space, but also in velocity, and then in the tensor product of space and velocity. Moreover, sometimes I want to use different Swarm fields as the DM field for the solver. You can
do all that with main now. If you just need a single DM with the same DM fields, release is fine.</div>
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<div>2. I assume you are using release</div>
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<div>You are correct. </div>
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<div>3. In both main and release, if you change the coordinates of your CellDM mesh, you need to rebin the particles. The easiest way to do this is to call DMSwarmMigrate(sw, PETSC_FALSE).</div>
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<div>What do you mean by rebin?</div>
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<div>When you provide the cell DM, Swrm makes a "sort context" that bins the particles into DM cells. If you change the coordinates, this binning will change, so you need it to "rebin" or recreate the sort context.</div>
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<div> Thanks,</div>
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<div>Miguel</div>
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<div> Thanks,</div>
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<div> Matt</div>
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Best,<br>
Miguel<br>
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</blockquote></div><div><br clear="all"></div><div><br></div><span class="gmail_signature_prefix">-- </span><br><div dir="ltr" class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>-- Norbert Wiener</div><div><br></div><div><a href="https://urldefense.us/v3/__http://www.cse.buffalo.edu/*knepley/__;fg!!G_uCfscf7eWS!ZR4qEUJFauPbLf2xjFCCNpzP81yruUvFjLgv04TV-z8lOzwKA--hL3qV6DsYz5Y5lMba6urrC0JQwRCb0BZR$" target="_blank">https://www.cse.buffalo.edu/~knepley/</a><br></div></div></div></div></div></div></div></div>