[sophie-Precision-3580:86913] shmem: mmap: an error occurred while determining whether or not /tmp/ompi.sophie-Precision-3580.1000/jf.0/3920101376/shared_mem_cuda_pool.sophie-Precision-3580 could be created. [sophie-Precision-3580:86913] create_and_attach: unable to create shared memory BTL coordinating structure :: size 134217728 Starting Xolotl (3.0.1-39-fdde1002) Tue Dec 10 11:02:51 2024 NetworkHandler: Loaded network of 2066 DOF with: Vacancy Basal Interstitial MaterialHandler: The selected material is: AlphaZr with the following processes: noSolve reaction sink TemperatureHandler: Using the time profile defined in: temp.txt Starting Xolotl (3.0.1-39-fdde1002) Tue Dec 10 11:02:52 2024 NetworkHandler: Loaded network of 660 DOF with: Vacancy Basal Interstitial MaterialHandler: The selected material is: AlphaZr with the following processes: constant reaction sink TemperatureHandler: Using the time profile defined in: temp.txt Starting Xolotl (3.0.1-39-fdde1002) Tue Dec 10 11:02:52 2024 NetworkHandler: Loaded network of 668 DOF with: Vacancy Basal Interstitial MaterialHandler: The selected material is: AlphaZr with the following processes: constant reaction sink TemperatureHandler: Using the time profile defined in: temp.txt Starting Xolotl (3.0.1-39-fdde1002) Tue Dec 10 11:02:52 2024 NetworkHandler: Loaded network of 738 DOF with: Vacancy Basal Interstitial MaterialHandler: The selected material is: AlphaZr with the following processes: constant reaction sink TemperatureHandler: Using the time profile defined in: temp.txt MultiXolotl: Restart file written to: xolotlRestart.txt SolverHandler: 0D simulation SolverHandler: 0D simulation SolverHandler: 0D simulation 0 TS dt 0. time 0. 0 TS dt 0. time 0. 0 TS dt 0. time 0. 0 TS dt 0. time 0. TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: TSStep has failed due to DIVERGED_STEP_REJECTED [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source: code [0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant source: code [0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT Date: 2024-08-01 13:52:28 +0000 [0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on sophie-Precision-3580 by sophie Tue Dec 10 11:02:51 2024 [0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc --prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0 --with-shared-libraries --with-64-bit-indices --download-kokkos --download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 [0]PETSC ERROR: #1 TSStep() at /home/sophie/Code/petsc/src/ts/interface/ts.c:3416 [0]PETSC ERROR: #2 TSSolve() at /home/sophie/Code/petsc/src/ts/interface/ts.c:4049 [0]PETSC ERROR: #3 solve() at /home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380 0 TS dt 0. time 0. TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: It appears a new error in the code was triggered after a previous error, possibly because: [0]PETSC ERROR: - The first error was not properly handled via (for example) the use of [0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or [0]PETSC ERROR: - The second error was triggered while handling the first error. [0]PETSC ERROR: Above is the traceback for the previous unhandled error, below the traceback for the next error [0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add the appropriate error checking to the code [0]PETSC ERROR: TSStep has failed due to DIVERGED_STEP_REJECTED [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source: code [0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant source: code [0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT Date: 2024-08-01 13:52:28 +0000 [0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on sophie-Precision-3580 by sophie Tue Dec 10 11:02:51 2024 [0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc --prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0 --with-shared-libraries --with-64-bit-indices --download-kokkos --download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 [0]PETSC ERROR: #1 TSStep() at /home/sophie/Code/petsc/src/ts/interface/ts.c:3416 [0]PETSC ERROR: #2 TSSolve() at /home/sophie/Code/petsc/src/ts/interface/ts.c:4049 [0]PETSC ERROR: #3 solve() at /home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380 0 TS dt 0. time 0. TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: It appears a new error in the code was triggered after a previous error, possibly because: [0]PETSC ERROR: - The first error was not properly handled via (for example) the use of [0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or [0]PETSC ERROR: - The second error was triggered while handling the first error. [0]PETSC ERROR: Above is the traceback for the previous unhandled error, below the traceback for the next error [0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add the appropriate error checking to the code [0]PETSC ERROR: TSStep has failed due to DIVERGED_STEP_REJECTED [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source: code [0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant source: code [0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT Date: 2024-08-01 13:52:28 +0000 [0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on sophie-Precision-3580 by sophie Tue Dec 10 11:02:51 2024 [0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc --prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0 --with-shared-libraries --with-64-bit-indices --download-kokkos --download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 [0]PETSC ERROR: #1 TSStep() at /home/sophie/Code/petsc/src/ts/interface/ts.c:3416 [0]PETSC ERROR: #2 TSSolve() at /home/sophie/Code/petsc/src/ts/interface/ts.c:4049 [0]PETSC ERROR: #3 solve() at /home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: It appears a new error in the code was triggered after a previous error, possibly because: [0]PETSC ERROR: - The first error was not properly handled via (for example) the use of [0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or [0]PETSC ERROR: - The second error was triggered while handling the first error. [0]PETSC ERROR: Above is the traceback for the previous unhandled error, below the traceback for the next error [0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add the appropriate error checking to the code [0]PETSC ERROR: TSStep has failed due to DIVERGED_STEP_REJECTED [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source: code [0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant source: code [0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT Date: 2024-08-01 13:52:28 +0000 [0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on sophie-Precision-3580 by sophie Tue Dec 10 11:02:51 2024 [0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc --prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0 --with-shared-libraries --with-64-bit-indices --download-kokkos --download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 [0]PETSC ERROR: #1 TSStep() at /home/sophie/Code/petsc/src/ts/interface/ts.c:3416 [0]PETSC ERROR: #2 TSSolve() at /home/sophie/Code/petsc/src/ts/interface/ts.c:4049 [0]PETSC ERROR: #3 solve() at /home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: It appears a new error in the code was triggered after a previous error, possibly because: [0]PETSC ERROR: - The first error was not properly handled via (for example) the use of [0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or [0]PETSC ERROR: - The second error was triggered while handling the first error. [0]PETSC ERROR: Above is the traceback for the previous unhandled error, below the traceback for the next error [0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add the appropriate error checking to the code [0]PETSC ERROR: TSStep has failed due to DIVERGED_STEP_REJECTED [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source: code [0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant source: code [0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT Date: 2024-08-01 13:52:28 +0000 [0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on sophie-Precision-3580 by sophie Tue Dec 10 11:02:51 2024 [0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc --prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0 --with-shared-libraries --with-64-bit-indices --download-kokkos --download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 [0]PETSC ERROR: #1 TSStep() at /home/sophie/Code/petsc/src/ts/interface/ts.c:3416 [0]PETSC ERROR: #2 TSSolve() at /home/sophie/Code/petsc/src/ts/interface/ts.c:4049 [0]PETSC ERROR: #3 solve() at /home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: It appears a new error in the code was triggered after a previous error, possibly because: [0]PETSC ERROR: - The first error was not properly handled via (for example) the use of [0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or [0]PETSC ERROR: - The second error was triggered while handling the first error. [0]PETSC ERROR: Above is the traceback for the previous unhandled error, below the traceback for the next error [0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add the appropriate error checking to the code [0]PETSC ERROR: TSStep has failed due to DIVERGED_STEP_REJECTED [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source: code [0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant source: code [0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT Date: 2024-08-01 13:52:28 +0000 [0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on sophie-Precision-3580 by sophie Tue Dec 10 11:02:51 2024 [0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc --prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0 --with-shared-libraries --with-64-bit-indices --download-kokkos --download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 [0]PETSC ERROR: #1 TSStep() at /home/sophie/Code/petsc/src/ts/interface/ts.c:3416 [0]PETSC ERROR: #2 TSSolve() at /home/sophie/Code/petsc/src/ts/interface/ts.c:4049 [0]PETSC ERROR: #3 solve() at /home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: It appears a new error in the code was triggered after a previous error, possibly because: [0]PETSC ERROR: - The first error was not properly handled via (for example) the use of [0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or [0]PETSC ERROR: - The second error was triggered while handling the first error. [0]PETSC ERROR: Above is the traceback for the previous unhandled error, below the traceback for the next error [0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add the appropriate error checking to the code [0]PETSC ERROR: TSStep has failed due to DIVERGED_STEP_REJECTED [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source: code [0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant source: code [0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT Date: 2024-08-01 13:52:28 +0000 [0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on sophie-Precision-3580 by sophie Tue Dec 10 11:02:51 2024 [0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc --prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0 --with-shared-libraries --with-64-bit-indices --download-kokkos --download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 [0]PETSC ERROR: #1 TSStep() at /home/sophie/Code/petsc/src/ts/interface/ts.c:3416 [0]PETSC ERROR: #2 TSSolve() at /home/sophie/Code/petsc/src/ts/interface/ts.c:4049 [0]PETSC ERROR: #3 solve() at /home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: It appears a new error in the code was triggered after a previous error, possibly because: [0]PETSC ERROR: - The first error was not properly handled via (for example) the use of [0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or [0]PETSC ERROR: - The second error was triggered while handling the first error. [0]PETSC ERROR: Above is the traceback for the previous unhandled error, below the traceback for the next error [0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add the appropriate error checking to the code [0]PETSC ERROR: TSStep has failed due to DIVERGED_STEP_REJECTED [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source: code [0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant source: code [0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT Date: 2024-08-01 13:52:28 +0000 [0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on sophie-Precision-3580 by sophie Tue Dec 10 11:02:51 2024 [0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc --prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0 --with-shared-libraries --with-64-bit-indices --download-kokkos --download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 [0]PETSC ERROR: #1 TSStep() at /home/sophie/Code/petsc/src/ts/interface/ts.c:3416 [0]PETSC ERROR: #2 TSSolve() at /home/sophie/Code/petsc/src/ts/interface/ts.c:4049 [0]PETSC ERROR: #3 solve() at /home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: It appears a new error in the code was triggered after a previous error, possibly because: [0]PETSC ERROR: - The first error was not properly handled via (for example) the use of [0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or [0]PETSC ERROR: - The second error was triggered while handling the first error. [0]PETSC ERROR: Above is the traceback for the previous unhandled error, below the traceback for the next error [0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add the appropriate error checking to the code [0]PETSC ERROR: TSStep has failed due to DIVERGED_STEP_REJECTED [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source: code [0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant source: code [0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT Date: 2024-08-01 13:52:28 +0000 [0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on sophie-Precision-3580 by sophie Tue Dec 10 11:02:51 2024 [0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc --prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0 --with-shared-libraries --with-64-bit-indices --download-kokkos --download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 [0]PETSC ERROR: #1 TSStep() at /home/sophie/Code/petsc/src/ts/interface/ts.c:3416 [0]PETSC ERROR: #2 TSSolve() at /home/sophie/Code/petsc/src/ts/interface/ts.c:4049 [0]PETSC ERROR: #3 solve() at /home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: It appears a new error in the code was triggered after a previous error, possibly because: [0]PETSC ERROR: - The first error was not properly handled via (for example) the use of [0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or [0]PETSC ERROR: - The second error was triggered while handling the first error. [0]PETSC ERROR: Above is the traceback for the previous unhandled error, below the traceback for the next error [0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add the appropriate error checking to the code [0]PETSC ERROR: TSStep has failed due to DIVERGED_STEP_REJECTED [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source: code [0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant source: code [0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT Date: 2024-08-01 13:52:28 +0000 [0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on sophie-Precision-3580 by sophie Tue Dec 10 11:02:51 2024 [0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc --prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0 --with-shared-libraries --with-64-bit-indices --download-kokkos --download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 [0]PETSC ERROR: #1 TSStep() at /home/sophie/Code/petsc/src/ts/interface/ts.c:3416 [0]PETSC ERROR: #2 TSSolve() at /home/sophie/Code/petsc/src/ts/interface/ts.c:4049 [0]PETSC ERROR: #3 solve() at /home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: It appears a new error in the code was triggered after a previous error, possibly because: [0]PETSC ERROR: - The first error was not properly handled via (for example) the use of [0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or [0]PETSC ERROR: - The second error was triggered while handling the first error. [0]PETSC ERROR: Above is the traceback for the previous unhandled error, below the traceback for the next error [0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add the appropriate error checking to the code [0]PETSC ERROR: TSStep has failed due to DIVERGED_STEP_REJECTED [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source: code [0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant source: code [0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT Date: 2024-08-01 13:52:28 +0000 [0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on sophie-Precision-3580 by sophie Tue Dec 10 11:02:51 2024 [0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc --prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0 --with-shared-libraries --with-64-bit-indices --download-kokkos --download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 [0]PETSC ERROR: #1 TSStep() at /home/sophie/Code/petsc/src/ts/interface/ts.c:3416 [0]PETSC ERROR: #2 TSSolve() at /home/sophie/Code/petsc/src/ts/interface/ts.c:4049 [0]PETSC ERROR: #3 solve() at /home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: It appears a new error in the code was triggered after a previous error, possibly because: [0]PETSC ERROR: - The first error was not properly handled via (for example) the use of [0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or [0]PETSC ERROR: - The second error was triggered while handling the first error. [0]PETSC ERROR: Above is the traceback for the previous unhandled error, below the traceback for the next error [0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add the appropriate error checking to the code [0]PETSC ERROR: TSStep has failed due to DIVERGED_STEP_REJECTED [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source: code [0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant source: code [0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT Date: 2024-08-01 13:52:28 +0000 [0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on sophie-Precision-3580 by sophie Tue Dec 10 11:02:51 2024 [0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc --prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0 --with-shared-libraries --with-64-bit-indices --download-kokkos --download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 [0]PETSC ERROR: #1 TSStep() at /home/sophie/Code/petsc/src/ts/interface/ts.c:3416 [0]PETSC ERROR: #2 TSSolve() at /home/sophie/Code/petsc/src/ts/interface/ts.c:4049 [0]PETSC ERROR: #3 solve() at /home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: It appears a new error in the code was triggered after a previous error, possibly because: [0]PETSC ERROR: - The first error was not properly handled via (for example) the use of [0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or [0]PETSC ERROR: - The second error was triggered while handling the first error. [0]PETSC ERROR: Above is the traceback for the previous unhandled error, below the traceback for the next error [0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add the appropriate error checking to the code [0]PETSC ERROR: TSStep has failed due to DIVERGED_STEP_REJECTED [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source: code [0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant source: code [0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT Date: 2024-08-01 13:52:28 +0000 [0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on sophie-Precision-3580 by sophie Tue Dec 10 11:02:51 2024 [0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc --prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0 --with-shared-libraries --with-64-bit-indices --download-kokkos --download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 [0]PETSC ERROR: #1 TSStep() at /home/sophie/Code/petsc/src/ts/interface/ts.c:3416 [0]PETSC ERROR: #2 TSSolve() at /home/sophie/Code/petsc/src/ts/interface/ts.c:4049 [0]PETSC ERROR: #3 solve() at /home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: It appears a new error in the code was triggered after a previous error, possibly because: [0]PETSC ERROR: - The first error was not properly handled via (for example) the use of [0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or [0]PETSC ERROR: - The second error was triggered while handling the first error. [0]PETSC ERROR: Above is the traceback for the previous unhandled error, below the traceback for the next error [0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add the appropriate error checking to the code [0]PETSC ERROR: TSStep has failed due to DIVERGED_STEP_REJECTED [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source: code [0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant source: code [0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT Date: 2024-08-01 13:52:28 +0000 [0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on sophie-Precision-3580 by sophie Tue Dec 10 11:02:51 2024 [0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc --prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0 --with-shared-libraries --with-64-bit-indices --download-kokkos --download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 [0]PETSC ERROR: #1 TSStep() at /home/sophie/Code/petsc/src/ts/interface/ts.c:3416 [0]PETSC ERROR: #2 TSSolve() at /home/sophie/Code/petsc/src/ts/interface/ts.c:4049 [0]PETSC ERROR: #3 solve() at /home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN) t=0 + 0.000e+00 retrying with dt=0.000e+00 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: It appears a new error in the code was triggered after a previous error, possibly because: [0]PETSC ERROR: - The first error was not properly handled via (for example) the use of [0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or [0]PETSC ERROR: - The second error was triggered while handling the first error. [0]PETSC ERROR: Above is the traceback for the previous unhandled error, below the traceback for the next error [0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add the appropriate error checking to the code [0]PETSC ERROR: TSStep has failed due to DIVERGED_STEP_REJECTED [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source: code [0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant source: code [0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT Date: 2024-08-01 13:52:28 +0000 [0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on sophie-Precision-3580 by sophie Tue Dec 10 11:02:51 2024 [0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc --prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0 --with-shared-libraries --with-64-bit-indices --download-kokkos --download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 [0]PETSC ERROR: #1 TSStep() at /home/sophie/Code/petsc/src/ts/interface/ts.c:3416 [0]PETSC ERROR: #2 TSSolve() at /home/sophie/Code/petsc/src/ts/interface/ts.c:4049 [0]PETSC ERROR: #3 solve() at /home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: It appears a new error in the code was triggered after a previous error, possibly because: [0]PETSC ERROR: - The first error was not properly handled via (for example) the use of [0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or [0]PETSC ERROR: - The second error was triggered while handling the first error. [0]PETSC ERROR: Above is the traceback for the previous unhandled error, below the traceback for the next error [0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add the appropriate error checking to the code [0]PETSC ERROR: Invalid argument [0]PETSC ERROR: You are destroying an option that has been used with PetscOptionsPush() but does not have a corresponding PetscOptionsPop() [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source: code [0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant source: code [0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT Date: 2024-08-01 13:52:28 +0000 [0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on sophie-Precision-3580 by sophie Tue Dec 10 11:02:51 2024 [0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc --prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0 --with-shared-libraries --with-64-bit-indices --download-kokkos --download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 [0]PETSC ERROR: #1 PetscOptionsDestroy() at /home/sophie/Code/petsc/src/sys/objects/options.c:178 [0]PETSC ERROR: #2 finalize() at /home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:484 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: It appears a new error in the code was triggered after a previous error, possibly because: [0]PETSC ERROR: - The first error was not properly handled via (for example) the use of [0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or [0]PETSC ERROR: - The second error was triggered while handling the first error. [0]PETSC ERROR: Above is the traceback for the previous unhandled error, below the traceback for the next error [0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add the appropriate error checking to the code [0]PETSC ERROR: Invalid argument [0]PETSC ERROR: You are destroying an option that has been used with PetscOptionsPush() but does not have a corresponding PetscOptionsPop() [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source: code [0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant source: code [0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT Date: 2024-08-01 13:52:28 +0000 [0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on sophie-Precision-3580 by sophie Tue Dec 10 11:02:51 2024 [0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc --prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0 --with-shared-libraries --with-64-bit-indices --download-kokkos --download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 [0]PETSC ERROR: #1 PetscOptionsDestroy() at /home/sophie/Code/petsc/src/sys/objects/options.c:178 [0]PETSC ERROR: #2 finalize() at /home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:484 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: It appears a new error in the code was triggered after a previous error, possibly because: [0]PETSC ERROR: - The first error was not properly handled via (for example) the use of [0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or [0]PETSC ERROR: - The second error was triggered while handling the first error. [0]PETSC ERROR: Above is the traceback for the previous unhandled error, below the traceback for the next error [0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add the appropriate error checking to the code [0]PETSC ERROR: Invalid argument [0]PETSC ERROR: You are destroying an option that has been used with PetscOptionsPush() but does not have a corresponding PetscOptionsPop() [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source: code [0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant source: code [0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT Date: 2024-08-01 13:52:28 +0000 [0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on sophie-Precision-3580 by sophie Tue Dec 10 11:02:51 2024 [0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc --prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0 --with-shared-libraries --with-64-bit-indices --download-kokkos --download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 [0]PETSC ERROR: #1 PetscOptionsDestroy() at /home/sophie/Code/petsc/src/sys/objects/options.c:178 [0]PETSC ERROR: #2 finalize() at /home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:484 WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:-fieldsplit_0_pc_type value: sor source: code Option left: name:-fieldsplit_1_pc_type value: redundant source: code Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code