<html><head><meta http-equiv="content-type" content="text/html; charset=utf-8"></head><body style="overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;"><div><br></div> Please send me exact instructions on how you are running the geoclaw example, when I run <div><br></div><div><p style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-variant-emoji: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">geoclaw/examples/bouss/radial_flat</span></p><p style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-variant-emoji: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><br></span></p><p style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-variant-emoji: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><br></span></p><div>it only runs with one level, but never errors, I changed setrun.py to amrdata.amr_levels_max = 5 but it made no difference.</div><div><br></div><div> Thanks</div><div><br></div><div> Barry</div><div><br></div><div><br></div><div><br><blockquote type="cite"><div>On Oct 24, 2024, at 12:17 PM, Praveen C <cpraveen@gmail.com> wrote:</div><br class="Apple-interchange-newline"><div><meta http-equiv="content-type" content="text/html; charset=utf-8"><div style="overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;">Hello Barry<div><br></div><div>I use this script to install clawpack and required dependencies</div><div><br></div><div><a href="https://urldefense.us/v3/__https://github.com/cpraveen/cfdlab/blob/master/bin/clawpack.sh__;!!G_uCfscf7eWS!YrqSkST0JSk-fVtltvkqECwG-Dvudk3Ba8qjPKEcTmL340jOuxTjqeQk2w6UmNMF9yUGd7H-E4YG1DtZVuDoN_E$">https://github.com/cpraveen/cfdlab/blob/master/bin/clawpack.sh</a></div><div><br></div><div>See lines 125-132</div><div><br></div><div>You can use it like this</div><div><br></div><div>export CLAW=/path/to/where/you/want/clawpack</div><div>bash clawpack.sh v5.11.0</div><div><br></div><div>This will git pull clawpack and creates a conda env called “claw” and installs inside that.</div><div><br></div><div>I have not specified petsc version in this script, but latest miniforge should install petsc@3.22</div><div><br></div><div>Thank you</div><div>praveen<br id="lineBreakAtBeginningOfMessage"><div><br><blockquote type="cite"><div>On 24 Oct 2024, at 9:37 PM, Barry Smith <bsmith@petsc.dev> wrote:</div><br class="Apple-interchange-newline"><div><meta http-equiv="content-type" content="text/html; charset=utf-8"><div style="overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;"><div><br></div> Good, some helpful information with the runs you made.<div><br></div><div> In the crash below it made more progress it was able to allocate multiple regions of shared memory and access them. I don't know why it would crash later.</div><div><br></div><div> Can you tell me all the steps with miniforge (which seems to be related to the failure) you use? I've never used miniforge. </div><div><br></div><div> If I can get to an environment that reproduces the problem I can debug it and fix it.</div><div><br></div><div> Barry</div><div><br id="lineBreakAtBeginningOfMessage"><div><br><blockquote type="cite"><div>On Oct 24, 2024, at 11:49 AM, Praveen C <cpraveen@gmail.com> wrote:</div><br class="Apple-interchange-newline"><div><meta http-equiv="content-type" content="text/html; charset=utf-8"><div style="overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;">I get this<div><br></div><div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><font color="#ff2600"><span style="font-variant-ligatures: no-common-ligatures;"><b>$</b></span><span style="font-variant-ligatures: no-common-ligatures"> mpiexec -n 3 ./ex89f -n 20 -mpi_linear_solver_server -mpi_linear_solver_server -mpi_linear_solver_server_ksp_view -ksp_monitor -ksp_converged_reason -ksp_view -mpi_linear_solver_server_minimum_count_per_rank 5</span></font></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: ------------------------------------------------------------------------</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: or see <a href="https://urldefense.us/v3/__https://petsc.org/release/faq/*valgrind__;Iw!!G_uCfscf7eWS!YrqSkST0JSk-fVtltvkqECwG-Dvudk3Ba8qjPKEcTmL340jOuxTjqeQk2w6UmNMF9yUGd7H-E4YG1DtZ_1I3Lsc$">https://petsc.org/release/faq/#valgrind</a> and <a href="https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!YrqSkST0JSk-fVtltvkqECwG-Dvudk3Ba8qjPKEcTmL340jOuxTjqeQk2w6UmNMF9yUGd7H-E4YG1DtZNJ6EACo$">https://petsc.org/release/faq/</a></font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run </font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: to get more information on the crash.</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: Run with -malloc_debug to check if memory corruption is causing the crash.</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">--------------------------------------------------------------------------</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_SELF</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> Proc: [[47380,1],0]</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> Errorcode: 59</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal; min-height: 18px;"><font color="#ff2600"><span style="font-variant-ligatures: no-common-ligatures"></span><br></font></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">You may or may not see output from other processes, depending on</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">exactly when Open MPI kills them.</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">--------------------------------------------------------------------------</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">--------------------------------------------------------------------------</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">prterun has exited due to process rank 0 with PID 0 on node MacMiniHome calling</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">"abort". This may have caused other processes in the application to be</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">terminated by signals sent by prterun (as reported here).</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">—————————————————————————————————————</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><br></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">and I have this after the code exits</span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><br></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><font color="#ff2600"><span style="font-variant-ligatures: no-common-ligatures;"><b>$</b></span><span style="font-variant-ligatures: no-common-ligatures"> ipcs -m</span></font></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">IPC status from <running system> as of Thu Oct 24 21:17:39 IST 2024</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">T ID KEY MODE OWNER GROUP</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">Shared Memory:</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">m 1572864 0x0000000b --rw-rw-rw- praveen staff</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">m 524289 0x0000000c --rw-rw-rw- praveen staff</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">m 655362 0x0000000d --rw-rw-rw- praveen staff</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">m 262147 0x0000000e --rw-rw-rw- praveen staff</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">m 262148 0x0000000f --rw-rw-rw- praveen staff</font></span></div><p style="margin: 0px; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">
</font></span></p><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">m 393221 0x0000000a --rw-rw-rw- praveen staff</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><br></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">This is with petsc installed with miniforge, which I also use with clawpack. With spack installed petsc, I can run the ex89f example.</span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><br></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">Thanks</span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">praveen</span></div><div><br><blockquote type="cite"><div>On 24 Oct 2024, at 7:55 PM, Barry Smith <bsmith@petsc.dev> wrote:</div><br class="Apple-interchange-newline"><div><meta http-equiv="content-type" content="text/html; charset=utf-8"><div style="overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;"><div><br></div> Ok, super strange, I've run many times on my Mac<div><br></div><div> Can you please try to remove that allocated memory with ipcrm and then</div><div><br></div><div> cd $PETSC_DIR/src/ksp/ksp/tutorials</div><div> make ex89f</div><div> <span style="font-family: Menlo;">mpiexec -n 3 ./ex89f</span><span style="font-family: Menlo;"> </span><span style="font-family: Menlo;">-n 20 -mpi_linear_solver_server -mpi_linear_solver_server -mpi_linear_solver_server_ksp_view -ksp_monitor -ksp_converged_reason -ksp_view</span><span style="font-family: Menlo;"> </span><span style="font-family: Menlo;">-mpi_linear_solver_server_minimum_count_per_rank 5</span><span style="font-family: Menlo;"> </span></div><div><span style="font-family: Menlo;"><br></span></div><div><span style="font-family: Menlo;"> This does the same thing as the GeoClaw code but is much simpler.</span></div><div><span style="font-family: Menlo;"><br></span></div><div><span style="font-family: Menlo;"> Barry</span></div><div><span style="font-family: Menlo;"><br></span></div><div><br></div><div> <br id="lineBreakAtBeginningOfMessage"><div><br><blockquote type="cite"><div>On Oct 23, 2024, at 10:55 PM, Praveen C <cpraveen@gmail.com> wrote:</div><br class="Apple-interchange-newline"><div><meta http-equiv="content-type" content="text/html; charset=utf-8"><div style="overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;">I get very similar error on my mac with<div><br></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><font color="#ff2600"><span style="font-variant-ligatures: no-common-ligatures;"><b>$</b></span><span style="font-variant-ligatures: no-common-ligatures"> gfortran -v</span></font></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">Using built-in specs.</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">COLLECT_GCC=gfortran</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">COLLECT_LTO_WRAPPER=/opt/homebrew/Caskroom/miniforge/base/envs/claw/libexec/gcc/arm64-apple-darwin20.0.0/13.2.0/lto-wrapper</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">Target: arm64-apple-darwin20.0.0</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">Configured with: ../configure --prefix=/opt/homebrew/Caskroom/miniforge/base/envs/claw --build=x86_64-apple-darwin13.4.0 --host=arm64-apple-darwin20.0.0 --target=arm64-apple-darwin20.0.0 --with-libiconv-prefix=/opt/homebrew/Caskroom/miniforge/base/envs/claw --enable-languages=fortran --disable-multilib --enable-checking=release --disable-bootstrap --disable-libssp --with-gmp=/opt/homebrew/Caskroom/miniforge/base/envs/claw --with-mpfr=/opt/homebrew/Caskroom/miniforge/base/envs/claw --with-mpc=/opt/homebrew/Caskroom/miniforge/base/envs/claw --with-isl=/opt/homebrew/Caskroom/miniforge/base/envs/claw --enable-darwin-at-rpath</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">Thread model: posix</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">Supported LTO compression algorithms: zlib</font></span></div>
<div><font color="#ff2600"><span style="font-size: 15px;">gcc version 13.2.0 (GCC)</span><span style="font-size: 15px;"> </span></font></div><div><br></div><div>Before starting</div><div><div><br></div><div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><font color="#ff2600"><span style="font-variant-ligatures: no-common-ligatures;"><b>$</b></span><span style="font-variant-ligatures: no-common-ligatures"> ipcs -m</span></font></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">IPC status from <running system> as of Thu Oct 24 08:02:11 IST 2024</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">T ID KEY MODE OWNER GROUP</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">Shared Memory:</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><br></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">and when I run the code</span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><br></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> Using a PETSc solver</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> Using Bouss equations from the start</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> rnode allocated...</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> node allocated...</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> listOfGrids allocated...</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> Storage allocated...</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> bndList allocated...</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">Gridding level 1 at t = 0.000000E+00: 4 grids with 10000 cells</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> Setting initial dt to 2.9999999999999999E-002</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> max threads set to 1</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal; min-height: 18px;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> </font></span><br class="webkit-block-placeholder"></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> Done reading data, starting computation ... </font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal; min-height: 18px;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> </font></span><br class="webkit-block-placeholder"></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> Total zeta at initial time: 39269.907650665169 </font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">GEOCLAW: Frame 0 output files done at time t = 0.000000D+00</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal; min-height: 18px;"><font color="#ff2600"><span style="font-variant-ligatures: no-common-ligatures"></span><br></font></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: Petsc has generated inconsistent data</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: Unable to locate PCMPI allocated shared address 0x130698000</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc!</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: Option left: name:-ksp_type value: preonly source: file</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: Option left: name:-mpi_ksp_max_it value: 200 source: file</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: Option left: name:-mpi_ksp_reuse_preconditioner (no value) source: file</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: Option left: name:-mpi_ksp_rtol value: 1.e-9 source: file</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: Option left: name:-mpi_ksp_type value: gmres source: file</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: Option left: name:-mpi_linear_solver_server_view (no value) source: file</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: Option left: name:-mpi_pc_gamg_sym_graph value: true source: file</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: Option left: name:-mpi_pc_gamg_symmetrize_graph value: true source: file</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: Option left: name:-mpi_pc_type value: gamg source: file</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: Option left: name:-pc_mpi_minimum_count_per_rank value: 5000 source: file</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: Option left: name:-pc_type value: mpi source: file</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: See <a href="https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!YrqSkST0JSk-fVtltvkqECwG-Dvudk3Ba8qjPKEcTmL340jOuxTjqeQk2w6UmNMF9yUGd7H-E4YG1DtZNJ6EACo$">https://petsc.org/release/faq/</a> for trouble shooting.</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: Petsc Release Version 3.22.0, Sep 28, 2024 </font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: /Users/praveen/work/bouss/radial_flat/xgeoclaw with 6 MPI process(es) and PETSC_ARCH on MacMiniHome.local by praveen Thu Oct 24 08:04:27 2024</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: Configure options: AR=arm64-apple-darwin20.0.0-ar CC=mpicc CXX=mpicxx FC=mpifort CFLAGS="-ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem /opt/homebrew/Caskroom/miniforge/base/envs/claw/include " CPPFLAGS="-D_FORTIFY_SOURCE=2 -isystem /opt/homebrew/Caskroom/miniforge/base/envs/claw/include -mmacosx-version-min=11.0 -mmacosx-version-min=11.0" CXXFLAGS="-ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /opt/homebrew/Caskroom/miniforge/base/envs/claw/include " FFLAGS="-march=armv8.3-a -ftree-vectorize -fPIC -fno-stack-protector -O2 -pipe -isystem /opt/homebrew/Caskroom/miniforge/base/envs/claw/include " LDFLAGS="-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/opt/homebrew/Caskroom/miniforge/base/envs/claw/lib -L/opt/homebrew/Caskroom/miniforge/base/envs/claw/lib" LIBS="-Wl,-rpath,/opt/homebrew/Caskroom/miniforge/base/envs/claw/lib -lmpi_mpifh -lgfortran" --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 --FOPTFLAGS=-O3 --with-clib-autodetect=0 --with-cxxlib-autodetect=0 --with-fortranlib-autodetect=0 --with-debugging=0 --with-blas-lib=libblas.dylib --with-lapack-lib=liblapack.dylib --with-yaml=1 --with-hdf5=1 --with-fftw=1 --with-hwloc=0 --with-hypre=1 --with-metis=1 --with-mpi=1 --with-mumps=1 --with-parmetis=1 --with-pthread=1 --with-ptscotch=1 --with-shared-libraries --with-ssl=0 --with-scalapack=1 --with-superlu=1 --with-superlu_dist=1 --with-superlu_dist-include=/opt/homebrew/Caskroom/miniforge/base/envs/claw/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-suitesparse=1 --with-suitesparse-dir=/opt/homebrew/Caskroom/miniforge/base/envs/claw --with-x=0 --with-scalar-type=real --with-cuda=0 --with-batch --prefix=/opt/homebrew/Caskroom/miniforge/base/envs/claw</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: #1 PetscShmgetMapAddresses() at /Users/runner/miniforge3/conda-bld/petsc_1728030427805/work/src/sys/utils/server.c:114</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: #2 PCMPISetMat() at /Users/runner/miniforge3/conda-bld/petsc_1728030427805/work/src/ksp/pc/impls/mpi/pcmpi.c:269</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: #3 PCSetUp_MPI() at /Users/runner/miniforge3/conda-bld/petsc_1728030427805/work/src/ksp/pc/impls/mpi/pcmpi.c:853</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: #4 PCSetUp() at /Users/runner/miniforge3/conda-bld/petsc_1728030427805/work/src/ksp/pc/interface/precon.c:1071</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: #5 KSPSetUp() at /Users/runner/miniforge3/conda-bld/petsc_1728030427805/work/src/ksp/ksp/interface/itfunc.c:415</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: #6 KSPSolve_Private() at /Users/runner/miniforge3/conda-bld/petsc_1728030427805/work/src/ksp/ksp/interface/itfunc.c:826</font></span></div><p style="margin: 0px; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">
</font></span></p><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">[0]PETSC ERROR: #7 KSPSolve() at /Users/runner/miniforge3/conda-bld/petsc_1728030427805/work/src/ksp/ksp/interface/itfunc.c:1075</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><br></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">Code does not progress and I kill it</span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><br></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">^CTraceback (most recent call last):</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> File "/Users/praveen/Applications/clawpack/clawutil/src/python/clawutil/runclaw.py", line 341, in <module></font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> runclaw(*args)</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> File "/Users/praveen/Applications/clawpack/clawutil/src/python/clawutil/runclaw.py", line 242, in runclaw</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> proc = subprocess.check_call(cmd_split,</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> File "/opt/homebrew/Caskroom/miniforge/base/envs/claw/lib/python3.12/subprocess.py", line 408, in check_call</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> retcode = call(*popenargs, **kwargs)</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> ^^^^^^^^^^^^^^^^^^^^^^^^^^</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> File "/opt/homebrew/Caskroom/miniforge/base/envs/claw/lib/python3.12/subprocess.py", line 391, in call</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> return p.wait(timeout=timeout)</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> ^^^^^^^^^^^^^^^^^^^^^^^</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> File "/opt/homebrew/Caskroom/miniforge/base/envs/claw/lib/python3.12/subprocess.py", line 1264, in wait</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> return self._wait(timeout=timeout)</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> ^^^^^^^^^^^^^^^^^^^^^^^^^^^</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> File "/opt/homebrew/Caskroom/miniforge/base/envs/claw/lib/python3.12/subprocess.py", line 2053, in _wait</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> (pid, sts) = self._try_wait(0)</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> ^^^^^^^^^^^^^^^^^</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> File "/opt/homebrew/Caskroom/miniforge/base/envs/claw/lib/python3.12/subprocess.py", line 2011, in _try_wait</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> (pid, sts) = os.waitpid(self.pid, wait_flags)</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600"> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">KeyboardInterrupt</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">make[1]: *** [output] Interrupt: 2</font></span></div><p style="margin: 0px; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">
</font></span></p><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">make: *** [.output] Interrupt: 2</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><br></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">Now it says</span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><br></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><font color="#ff2600"><span style="font-variant-ligatures: no-common-ligatures;"><b>$</b></span><span style="font-variant-ligatures: no-common-ligatures"> ipcs -m </span></font></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">IPC status from <running system> as of Thu Oct 24 08:05:06 IST 2024</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">T ID KEY MODE OWNER GROUP</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">Shared Memory:</font></span></div><p style="margin: 0px; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">
</font></span></p><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><font color="#ff2600">m 720896 0x0000000a --rw-rw-rw- praveen staff</font></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><br></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">Thanks</span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">praveen</span></div><div><br><blockquote type="cite"><div>On 23 Oct 2024, at 8:26 PM, Barry Smith <bsmith@petsc.dev> wrote:</div><br class="Apple-interchange-newline"><div><meta http-equiv="content-type" content="text/html; charset=utf-8"><div style="overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;"><div><br></div> Hmm, so it is creating the first shared memory region with ID of 10 (A in hex) puts it in a linked list in PETSc but then when it tries to find it in the linked list it cannot find it.<div><br></div><div> I don't know how to reproduce this or debug it remotely.</div><div><br></div><div> Can you build on a completely different machine or with completely different compilers?</div><div><br></div><div> Barry</div><div><br></div><div><br></div><div><br id="lineBreakAtBeginningOfMessage"><div><br><blockquote type="cite"><div>On Oct 23, 2024, at 10:31 AM, Praveen C <cpraveen@gmail.com> wrote:</div><br class="Apple-interchange-newline"><div><meta http-equiv="content-type" content="text/html; charset=utf-8"><div style="overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;">I get same error and now it shows<div><br></div><div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">$ ipcs -m</span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal; min-height: 18px;"><span style="font-variant-ligatures: no-common-ligatures"></span><br></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">------ Shared Memory Segments --------</span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">key shmid owner perms bytes nattch status </span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">0x0000000a 32788 praveen 666 240 6 </span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><br></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">Note that the code seems to be still running after printing those error message, but it is not printing any progress which it should do.</span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><br></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">Thanks</span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">praveen</span></div><div><br><blockquote type="cite"><div>On 23 Oct 2024, at 7:56 PM, Barry Smith <bsmith@petsc.dev> wrote:</div><br class="Apple-interchange-newline"><div><meta http-equiv="content-type" content="text/html; charset=utf-8"><div style="overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;"><div><br></div> Try <div><br></div><div>ipcrm -m 11</div><div><br></div><div>ipcs -m</div><div><br></div><div>Try running the program again</div><div><br></div><div>If failed check </div><div><br></div><div>ipcs -m</div><div><br></div><div>again</div><div><font color="#912583" face="SFMono-Regular, Menlo, Consolas, Monaco, Liberation Mono, Lucida Console, monospace"><span style="caret-color: rgb(145, 37, 131); font-size: 14px; background-color: rgb(255, 255, 255);"><br></span></font></div><div><font color="#912583" face="SFMono-Regular, Menlo, Consolas, Monaco, Liberation Mono, Lucida Console, monospace"><span style="caret-color: rgb(145, 37, 131); font-size: 14px; background-color: rgb(255, 255, 255);"><br id="lineBreakAtBeginningOfMessage"></span></font><div><br><blockquote type="cite"><div>On Oct 23, 2024, at 10:20 AM, Praveen C <cpraveen@gmail.com> wrote:</div><br class="Apple-interchange-newline"><div><meta http-equiv="content-type" content="text/html; charset=utf-8"><div style="overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;">Hello Barry<div><br></div><div>I see this</div><div><br></div><div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">$ ipcs -m</span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal; min-height: 18px;"><span style="font-variant-ligatures: no-common-ligatures"></span><br></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">------ Shared Memory Segments --------</span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">key shmid owner perms bytes nattch status </span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">0x0000000a 11 praveen 666 240 6 </span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><br></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">and I am observing same error as below.</span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures"><br></span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">Thanks</span></div><div style="margin: 0px; font-style: normal; font-variant-caps: normal; font-stretch: normal; font-size: 15px; line-height: normal; font-size-adjust: none; font-kerning: auto; font-variant-alternates: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-east-asian: normal; font-variant-position: normal; font-feature-settings: normal; font-optical-sizing: auto; font-variation-settings: normal;"><span style="font-variant-ligatures: no-common-ligatures">praveen</span></div><div><br><blockquote type="cite"><div>On 23 Oct 2024, at 7:08 PM, Barry Smith <bsmith@petsc.dev> wrote:</div><br class="Apple-interchange-newline"><div><meta http-equiv="content-type" content="text/html; charset=utf-8"><div style="overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;"><div><br></div> Please take a look at the notes in <a href="https://urldefense.us/v3/__https://petsc.org/release/manualpages/Sys/PetscShmgetAllocateArray/__;!!G_uCfscf7eWS!YrqSkST0JSk-fVtltvkqECwG-Dvudk3Ba8qjPKEcTmL340jOuxTjqeQk2w6UmNMF9yUGd7H-E4YG1DtZr_sBLR0$">https://petsc.org/release/manualpages/Sys/PetscShmgetAllocateArray/</a> For some reason your program is not able to access/use the Unix shared memory; check if you are already using the shared memory (so it is not available for a new run) or the limits are too low to access enough memory.<div><br></div><div> Barry<br id="lineBreakAtBeginningOfMessage"><div><br><blockquote type="cite"><div>On Oct 23, 2024, at 8:23 AM, Praveen C <cpraveen@gmail.com> wrote:</div><br class="Apple-interchange-newline"><div><div>Dear all<br><br>I am not able to run the boussinesq example from geoclaw using petsc@3.22.0<br><br>https://urldefense.us/v3/__https://github.com/clawpack/geoclaw/tree/3303883f46572c58130d161986b8a87a57ca7816/examples/bouss__;!!G_uCfscf7eWS!e3VQ4NHKmXGstRsQW5vtI7fmKfUT9zmJkMJcPbcvPyIjicyfJpNoMgx3wZ-qyGcKNSjIkNZkzilec8MnHN6PMw$ <br><br>It runs with petsc@3.21.6<br><br>The error I get is given below. After printing this, the code does not progress.<br><br>I use the following petsc options<br><br># set min numbers of matrix rows per MPI rank (default is 10000)<br>-mpi_linear_solve_minimum_count_per_rank 5000<br><br><br># Krylov linear solver:<br>-mpi_linear_solver_server<br>-mpi_linear_solver_server_view<br>-ksp_type gmres<br>-ksp_max_it 200<br>-ksp_reuse_preconditioner<br>-ksp_rtol 1.e-9<br><br># preconditioner:<br>-pc_type gamg<br><br>I installed petsc and other dependencies for clawpack using miniforge.<br><br>Thanks<br>pc<br><br>==> Use Bouss. in water deeper than 1.0000000000000000 Using a PETSc solver<br>Using Bouss equations from the start<br>rnode allocated...<br>node allocated...<br>listOfGrids allocated...<br>Storage allocated...<br>bndList allocated...<br>Gridding level 1 at t = 0.000000E+00: 4 grids with 10000 cells<br> Setting initial dt to 2.9999999999999999E-002<br> max threads set to 6<br> Done reading data, starting computation ... Total zeta at initial time: 39269.907650665169 GEOCLAW: Frame 0 output files done at time t = 0.000000D+00<br><br>[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------<br>[0]PETSC ERROR: Petsc has generated inconsistent data<br>[0]PETSC ERROR: Unable to locate PCMPI allocated shared address 0x55e6d750ae20<br>[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc!<br>[0]PETSC ERROR: Option left: name:-ksp_max_it value: 200 source: file<br>[0]PETSC ERROR: Option left: name:-ksp_reuse_preconditioner (no value) source: file<br>[0]PETSC ERROR: Option left: name:-ksp_rtol value: 1.e-9 source: file<br>[0]PETSC ERROR: Option left: name:-ksp_type value: gmres source: file<br>[0]PETSC ERROR: Option left: name:-mpi_linear_solve_minimum_count_per_rank value: 5000 source: file<br>[0]PETSC ERROR: Option left: name:-mpi_linear_solver_server_view (no value) source: file<br>[0]PETSC ERROR: Option left: name:-pc_type value: gamg source: file<br>[0]PETSC ERROR: See https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!e3VQ4NHKmXGstRsQW5vtI7fmKfUT9zmJkMJcPbcvPyIjicyfJpNoMgx3wZ-qyGcKNSjIkNZkzilec8MvNjNo7A$ for trouble shooting.<br>[0]PETSC ERROR: Petsc Release Version 3.22.0, Sep 28, 2024 [0]PETSC ERROR: /home/praveen/bouss/radial_flat/xgeoclaw with 6 MPI process(es) and PETSC_ARCH on euler by praveen Thu Oct 17 21:49:54 2024<br>[0]PETSC ERROR: Configure options: AR=${PREFIX}/bin/x86_64-conda-linux-gnu-ar CC=mpicc CXX=mpicxx FC=mpifort CFLAGS="-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /opt/miniforge/envs/claw/include " CPPFLAGS="-DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /opt/miniforge/envs/claw/include" CXXFLAGS="-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /opt/miniforge/envs/claw/include " FFLAGS="-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /opt/miniforge/envs/claw/include -Wl,--no-as-needed" LDFLAGS="-pthread -fopenmp -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/opt/miniforge/envs/claw/lib -Wl,-rpath-link,/opt/miniforge/envs/claw/lib -L/opt/miniforge/envs/claw/lib -Wl,-rpath-link,/opt/miniforge/envs/claw/lib" LIBS="-Wl,-rpath,/opt/miniforge/envs/claw/lib -lmpi_mpifh -lgfortran" --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 --FOPTFLAGS=-O3 --with-clib-autodetect=0 --with-cxxlib-autodetect=0 --with-fortranlib-autodetect=0 --with-debugging=0 --with-blas-lib=libblas.so --with-lapack-lib=liblapack.so --with-yaml=1 --with-hdf5=1 --with-fftw=1 --with-hwloc=0 --with-hypre=1 --with-metis=1 --with-mpi=1 --with-mumps=1 --with-parmetis=1 --with-pthread=1 --with-ptscotch=1 --with-shared-libraries --with-ssl=0 --with-scalapack=1 --with-superlu=1 --with-superlu_dist=1 --with-superlu_dist-include=/opt/miniforge/envs/claw/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-suitesparse=1 --with-suitesparse-dir=/opt/miniforge/envs/claw --with-x=0 --with-scalar-type=real --with-cuda=0 --prefix=/opt/miniforge/envs/claw<br>[0]PETSC ERROR: #1 PetscShmgetMapAddresses() at /home/conda/feedstock_root/build_artifacts/petsc_1728030599661/work/src/sys/utils/server.c:114<br>[0]PETSC ERROR: #2 PCMPISetMat() at /home/conda/feedstock_root/build_artifacts/petsc_1728030599661/work/src/ksp/pc/impls/mpi/pcmpi.c:269<br>[0]PETSC ERROR: #3 PCSetUp_MPI() at /home/conda/feedstock_root/build_artifacts/petsc_1728030599661/work/src/ksp/pc/impls/mpi/pcmpi.c:853<br>[0]PETSC ERROR: #4 PCSetUp() at /home/conda/feedstock_root/build_artifacts/petsc_1728030599661/work/src/ksp/pc/interface/precon.c:1071<br>[0]PETSC ERROR: #5 KSPSetUp() at /home/conda/feedstock_root/build_artifacts/petsc_1728030599661/work/src/ksp/ksp/interface/itfunc.c:415<br>[0]PETSC ERROR: #6 KSPSolve_Private() at /home/conda/feedstock_root/build_artifacts/petsc_1728030599661/work/src/ksp/ksp/interface/itfunc.c:826<br>[0]PETSC ERROR: #7 KSPSolve() at /home/conda/feedstock_root/build_artifacts/petsc_1728030599661/work/src/ksp/ksp/interface/itfunc.c:1075</div></div></blockquote></div><br></div></div></div></blockquote></div><br></div></div></div></blockquote></div><br></div></div></div></blockquote></div><br></div></div></div></blockquote></div><br></div></div></div></blockquote></div><br></div></div></div></div></blockquote></div><br></div></div></div></blockquote></div><br></div></div></div></blockquote></div><br></div></div></div></blockquote></div><br></div></div></div></blockquote></div><br></div></body></html>