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Thanks Barry, that was the problem! Thank you, Miguel On Jun 24, 2024, at 12: 56 PM, Barry Smith <bsmith@ petsc. dev> wrote: The error is coming from the parallel SNES used by TS TSTheta_SNESSolve() not your small SNES solver but TSTheta_SNESSolve()
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<div>Thanks Barry, that was the problem! </div>
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<div>Thank you,</div>
<div>Miguel</div>
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<div>On Jun 24, 2024, at 12:56 PM, Barry Smith <bsmith@petsc.dev> wrote:</div>
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<div> The error is coming from the parallel SNES used by TS TSTheta_SNESSolve() not your small SNES solver but TSTheta_SNESSolve() </div>
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<div> Process 7 uses [7]PETSC ERROR: #4 SNESLineSearchApply_CP() while the rest uses _BT(). I think this causes the problem since they are different algorithms using different MPI.</div>
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<div> Are you perhaps setting somewhere the line search to use? Options database or someway that different processes will get a different value?</div>
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<div>On Jun 24, 2024, at 2:50 PM, MIGUEL MOLINOS PEREZ <mmolinos@us.es> wrote:</div>
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This message came from outside your organization.</div>
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<span style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;">Dear
all,</span>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
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I am trying to assemble a matrix A with coefficients which I need to assemble the RHS (F) and its Jacobian (J) in a TS type of problem.</div>
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Determining each coefficient of A involves the resolution of a small non-linear problem (1 dof) using the serial version of SNES. By the way, t<span style="caret-color: rgb(0, 0, 0);">he matrix A is of the type</span><span style="caret-color: rgb(0, 0, 0);"> </span> “<span style="color: rgb(46, 46, 46); font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255);">MATMPIAIJ</span>”.</div>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
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The weird part is, if I pass the matrix A <span style="caret-color: rgb(0, 0, 0);"> </span><span style="caret-color: rgb(0, 0, 0);">to the TS routine</span> inside of a user-context structure, without even accessing to the values inside of A, I got the following
error message:</div>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<pre style="text-wrap-mode: wrap; caret-color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);">><i> [1]PETSC ERROR: Petsc has generated inconsistent data
</i>><i> [1]PETSC ERROR: MPI_Allreduce() called in different locations (code lines)
</i>><i> on different processors</i></pre>
</div>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
But if I comment out the line which calls the SNES routine used to evaluate the coefficients inside of A, I don’t get the error message. </div>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br>
</div>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
Some additional context:</div>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
- The SNES routine is called once at a time inside of each rank.</div>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
- I use <span style="font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255); color: rgb(99, 99, 36);">PetscCall</span><span style="font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255); color: rgb(94, 94, 94);">(</span><span style="font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255); color: rgb(99, 99, 36);">SNESCreate</span><span style="font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255); color: rgb(94, 94, 94);">(</span><span style="color: rgb(46, 46, 46); font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255);">PETSC_COMM_SELF</span><span style="font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255); color: rgb(94, 94, 94);">,</span><span style="color: rgb(46, 46, 46); font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255);">
</span><span style="font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255); color: rgb(94, 94, 94);">&</span><span style="font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255); color: rgb(9, 89, 132);">snes</span><span style="font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255); color: rgb(94, 94, 94);">));</span></div>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<font><span style="background-color: rgb(255, 255, 255);"><span style="caret-color: rgb(94, 94, 94); white-space: pre;">- The vectors inside of the SNES function are defined as follows:
</span></span></font><span style="font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255); color: rgb(99, 99, 36);">VecCreateSeq</span><span style="font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255); color: rgb(94, 94, 94);">(</span><span style="color: rgb(46, 46, 46); font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255);">PETSC_COMM_SELF</span><span style="font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255); color: rgb(94, 94, 94);">,</span><span style="color: rgb(46, 46, 46); font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255);">
</span><span style="font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255); color: rgb(73, 104, 57);">1</span><span style="font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255); color: rgb(94, 94, 94);">,</span><span style="color: rgb(46, 46, 46); font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255);">
</span><span style="font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255); color: rgb(94, 94, 94);">&</span><span style="font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255); color: rgb(9, 89, 132);">Y</span><span style="font-family: Menlo, Monaco, "Courier New", monospace; white-space: pre; background-color: rgb(255, 255, 255); color: rgb(94, 94, 94);">)</span></div>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<font><span style="background-color: rgb(255, 255, 255);"><span style="caret-color: rgb(94, 94, 94); white-space: pre;">- All the input fields for SNES are also sequential</span>.</span></font></div>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<font><span style="background-color: rgb(255, 255, 255);"><br>
</span></font></div>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<font><span style="background-color: rgb(255, 255, 255);">Any feedback is greatly appreciated!</span></font></div>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<font><span style="background-color: rgb(255, 255, 255);"><br>
</span></font></div>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
Thanks,</div>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
Miguel</div>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br>
</div>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br>
</div>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br>
</div>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<div>[test-Mass-Transport-Master-Equation-PETSc-Backward-Euler][MgHx-hcp-x5x5x5-cell]</div>
<div>t=0.0000e+00 dt=1.0000e-07 it=( 0, 0)</div>
<div> 0 KSP Residual norm 4.776631889125e-07</div>
<div> 1 KSP Residual norm 6.807505564283e-17</div>
<div>[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</div>
<div>[0]PETSC ERROR: Petsc has generated inconsistent data</div>
<div>[5]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</div>
<div>[5]PETSC ERROR: Petsc has generated inconsistent data</div>
<div>[7]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</div>
<div>[7]PETSC ERROR: Petsc has generated inconsistent data</div>
<div>[0]PETSC ERROR: MPI_Allreduce() called in different locations (code lines) on different processors</div>
<div>[1]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</div>
<div>[1]PETSC ERROR: Petsc has generated inconsistent data</div>
<div>[1]PETSC ERROR: MPI_Allreduce() called in different locations (code lines) on different processors</div>
<div>[2]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</div>
<div>[2]PETSC ERROR: Petsc has generated inconsistent data</div>
<div>[2]PETSC ERROR: MPI_Allreduce() called in different locations (code lines) on different processors</div>
<div>[3]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</div>
<div>[3]PETSC ERROR: Petsc has generated inconsistent data</div>
<div>[3]PETSC ERROR: MPI_Allreduce() called in different locations (code lines) on different processors</div>
<div>[4]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</div>
<div>[4]PETSC ERROR: Petsc has generated inconsistent data</div>
<div>[4]PETSC ERROR: MPI_Allreduce() called in different locations (code lines) on different processors</div>
<div>[5]PETSC ERROR: MPI_Allreduce() called in different locations (code lines) on different processors</div>
<div>[6]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</div>
<div>[6]PETSC ERROR: Petsc has generated inconsistent data</div>
<div>[6]PETSC ERROR: MPI_Allreduce() called in different locations (code lines) on different processors</div>
<div>[7]PETSC ERROR: MPI_Allreduce() called in different locations (code lines) on different processors</div>
<div>[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc!</div>
<div>[1]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc!</div>
<div>[2]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc!</div>
<div>[2]PETSC ERROR: Option left: name:-sns_monitor (no value) source: code</div>
<div>[2]PETSC ERROR: [3]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc!</div>
<div>[3]PETSC ERROR: Option left: name:-sns_monitor (no value) source: code</div>
<div>[3]PETSC ERROR: See<span class="Apple-converted-space"> </span><a href="https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!YCo3JjgVyVqwScfRf05FevGAOdJG2APEIkhxmpYQmmJFmnrOBYrCKeun20x6gytf7m2IpXZPhyib8zJmPUCYCw$">https://petsc.org/release/faq/</a><span class="Apple-converted-space"> </span>for
trouble shooting.</div>
<div>[4]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc!</div>
<div>[4]PETSC ERROR: Option left: name:-sns_monitor (no value) source: code</div>
<div>[4]PETSC ERROR: See<span class="Apple-converted-space"> </span><a href="https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!YCo3JjgVyVqwScfRf05FevGAOdJG2APEIkhxmpYQmmJFmnrOBYrCKeun20x6gytf7m2IpXZPhyib8zJmPUCYCw$">https://petsc.org/release/faq/</a><span class="Apple-converted-space"> </span>for
trouble shooting.</div>
<div>[5]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc!</div>
<div>[5]PETSC ERROR: Option left: name:-sns_monitor (no value) source: code</div>
<div>[5]PETSC ERROR: See<span class="Apple-converted-space"> </span><a href="https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!YCo3JjgVyVqwScfRf05FevGAOdJG2APEIkhxmpYQmmJFmnrOBYrCKeun20x6gytf7m2IpXZPhyib8zJmPUCYCw$">https://petsc.org/release/faq/</a><span class="Apple-converted-space"> </span>for
trouble shooting.</div>
<div>[5]PETSC ERROR: Petsc Release Version 3.21.0, unknown </div>
<div>[6]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc!</div>
<div>[6]PETSC ERROR: Option left: name:-sns_monitor (no value) source: code</div>
<div>[6]PETSC ERROR: See<span class="Apple-converted-space"> </span><a href="https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!YCo3JjgVyVqwScfRf05FevGAOdJG2APEIkhxmpYQmmJFmnrOBYrCKeun20x6gytf7m2IpXZPhyib8zJmPUCYCw$">https://petsc.org/release/faq/</a><span class="Apple-converted-space"> </span>for
trouble shooting.</div>
<div>[6]PETSC ERROR: Petsc Release Version 3.21.0, unknown </div>
<div>[6]PETSC ERROR: [7]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc!</div>
<div>[7]PETSC ERROR: Option left: name:-sns_monitor (no value) source: code</div>
<div>[0]PETSC ERROR: Option left: name:-sns_monitor (no value) source: code</div>
<div>[0]PETSC ERROR: See<span class="Apple-converted-space"> </span><a href="https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!YCo3JjgVyVqwScfRf05FevGAOdJG2APEIkhxmpYQmmJFmnrOBYrCKeun20x6gytf7m2IpXZPhyib8zJmPUCYCw$">https://petsc.org/release/faq/</a><span class="Apple-converted-space"> </span>for
trouble shooting.</div>
<div>[0]PETSC ERROR: Petsc Release Version 3.21.0, unknown </div>
<div>[0]PETSC ERROR: ./exe-tasting-SOLERA on a arch-darwin-c-debug named mmp-laptop.local by migmolper Mon Jun 24 11:37:38 2024</div>
<div>[1]PETSC ERROR: Option left: name:-sns_monitor (no value) source: code</div>
<div>[1]PETSC ERROR: See<span class="Apple-converted-space"> </span><a href="https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!YCo3JjgVyVqwScfRf05FevGAOdJG2APEIkhxmpYQmmJFmnrOBYrCKeun20x6gytf7m2IpXZPhyib8zJmPUCYCw$">https://petsc.org/release/faq/</a><span class="Apple-converted-space"> </span>for
trouble shooting.</div>
<div>See<span class="Apple-converted-space"> </span><a href="https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!YCo3JjgVyVqwScfRf05FevGAOdJG2APEIkhxmpYQmmJFmnrOBYrCKeun20x6gytf7m2IpXZPhyib8zJmPUCYCw$">https://petsc.org/release/faq/</a><span class="Apple-converted-space"> </span>for
trouble shooting.</div>
<div>[2]PETSC ERROR: Petsc Release Version 3.21.0, unknown </div>
<div>[2]PETSC ERROR: ./exe-tasting-SOLERA on a arch-darwin-c-debug named mmp-laptop.local by migmolper Mon Jun 24 11:37:38 2024</div>
<div>[2]PETSC ERROR: Configure options --download-hdf5=1 --download-mpich=1 --with-debugging=1 CC=gcc CXX=c++ PETSC_ARCH=arch-darwin-c-debug --with-x</div>
<div>[3]PETSC ERROR: Petsc Release Version 3.21.0, unknown </div>
<div>[3]PETSC ERROR: ./exe-tasting-SOLERA on a arch-darwin-c-debug named mmp-laptop.local by migmolper Mon Jun 24 11:37:38 2024</div>
<div>[3]PETSC ERROR: Configure options --download-hdf5=1 --download-mpich=1 --with-debugging=1 CC=gcc CXX=c++ PETSC_ARCH=arch-darwin-c-debug --with-x</div>
<div>[4]PETSC ERROR: Petsc Release Version 3.21.0, unknown </div>
<div>[4]PETSC ERROR: ./exe-tasting-SOLERA on a arch-darwin-c-debug named mmp-laptop.local by migmolper Mon Jun 24 11:37:38 2024</div>
<div>[4]PETSC ERROR: Configure options --download-hdf5=1 --download-mpich=1 --with-debugging=1 CC=gcc CXX=c++ PETSC_ARCH=arch-darwin-c-debug --with-x</div>
<div>[5]PETSC ERROR: ./exe-tasting-SOLERA on a arch-darwin-c-debug named mmp-laptop.local by migmolper Mon Jun 24 11:37:38 2024</div>
<div>[5]PETSC ERROR: Configure options --download-hdf5=1 --download-mpich=1 --with-debugging=1 CC=gcc CXX=c++ PETSC_ARCH=arch-darwin-c-debug --with-x</div>
<div>./exe-tasting-SOLERA on a arch-darwin-c-debug named mmp-laptop.local by migmolper Mon Jun 24 11:37:38 2024</div>
<div>[6]PETSC ERROR: Configure options --download-hdf5=1 --download-mpich=1 --with-debugging=1 CC=gcc CXX=c++ PETSC_ARCH=arch-darwin-c-debug --with-x</div>
<div>See<span class="Apple-converted-space"> </span><a href="https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!YCo3JjgVyVqwScfRf05FevGAOdJG2APEIkhxmpYQmmJFmnrOBYrCKeun20x6gytf7m2IpXZPhyib8zJmPUCYCw$">https://petsc.org/release/faq/</a><span class="Apple-converted-space"> </span>for
trouble shooting.</div>
<div>[7]PETSC ERROR: Petsc Release Version 3.21.0, unknown </div>
<div>[7]PETSC ERROR: ./exe-tasting-SOLERA on a arch-darwin-c-debug named mmp-laptop.local by migmolper Mon Jun 24 11:37:38 2024</div>
<div>[7]PETSC ERROR: Configure options --download-hdf5=1 --download-mpich=1 --with-debugging=1 CC=gcc CXX=c++ PETSC_ARCH=arch-darwin-c-debug --with-x</div>
<div>Configure options --download-hdf5=1 --download-mpich=1 --with-debugging=1 CC=gcc CXX=c++ PETSC_ARCH=arch-darwin-c-debug --with-x</div>
<div>[1]PETSC ERROR: Petsc Release Version 3.21.0, unknown </div>
<div>[1]PETSC ERROR: ./exe-tasting-SOLERA on a arch-darwin-c-debug named mmp-laptop.local by migmolper Mon Jun 24 11:37:38 2024</div>
<div>[1]PETSC ERROR: Configure options --download-hdf5=1 --download-mpich=1 --with-debugging=1 CC=gcc CXX=c++ PETSC_ARCH=arch-darwin-c-debug --with-x</div>
<div>[0]PETSC ERROR: #1 PetscSplitReductionApply() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:230</div>
<div>[2]PETSC ERROR: #1 PetscSplitReductionApply() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:230</div>
<div>[2]PETSC ERROR: [3]PETSC ERROR: #1 PetscSplitReductionApply() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:230</div>
<div>[3]PETSC ERROR: #2 PetscSplitReductionEnd() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:172</div>
<div>[4]PETSC ERROR: #1 PetscSplitReductionApply() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:230</div>
<div>[4]PETSC ERROR: #2 PetscSplitReductionEnd() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:172</div>
<div>[5]PETSC ERROR: #1 PetscSplitReductionApply() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:230</div>
<div>[5]PETSC ERROR: #2 PetscSplitReductionEnd() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:172</div>
<div>[0]PETSC ERROR: #2 PetscSplitReductionEnd() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:172</div>
<div>[0]PETSC ERROR: #3 VecNormEnd() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:553</div>
<div>[0]PETSC ERROR: #4 SNESLineSearchApply_BT() at /Users/migmolper/petsc/src/snes/linesearch/impls/bt/linesearchbt.c:88</div>
<div>[1]PETSC ERROR: #1 PetscSplitReductionApply() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:230</div>
<div>[1]PETSC ERROR: #2 PetscSplitReductionEnd() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:172</div>
<div>[1]PETSC ERROR: #3 VecNormEnd() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:553</div>
<div>#2 PetscSplitReductionEnd() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:172</div>
<div>[2]PETSC ERROR: #3 VecNormEnd() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:553</div>
<div>[2]PETSC ERROR: #4 SNESLineSearchApply_BT() at /Users/migmolper/petsc/src/snes/linesearch/impls/bt/linesearchbt.c:88</div>
<div>[2]PETSC ERROR: [3]PETSC ERROR: #3 VecNormEnd() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:553</div>
<div>[3]PETSC ERROR: #4 SNESLineSearchApply_BT() at /Users/migmolper/petsc/src/snes/linesearch/impls/bt/linesearchbt.c:88</div>
<div>[3]PETSC ERROR: #5 SNESLineSearchApply() at /Users/migmolper/petsc/src/snes/linesearch/interface/linesearch.c:645</div>
<div>[4]PETSC ERROR: #3 VecNormEnd() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:553</div>
<div>[4]PETSC ERROR: #4 SNESLineSearchApply_BT() at /Users/migmolper/petsc/src/snes/linesearch/impls/bt/linesearchbt.c:88</div>
<div>[4]PETSC ERROR: #5 SNESLineSearchApply() at /Users/migmolper/petsc/src/snes/linesearch/interface/linesearch.c:645</div>
<div>[5]PETSC ERROR: #3 VecNormEnd() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:553</div>
<div>[5]PETSC ERROR: #4 SNESLineSearchApply_BT() at /Users/migmolper/petsc/src/snes/linesearch/impls/bt/linesearchbt.c:88</div>
<div>[5]PETSC ERROR: #5 SNESLineSearchApply() at /Users/migmolper/petsc/src/snes/linesearch/interface/linesearch.c:645</div>
<div>[5]PETSC ERROR: [6]PETSC ERROR: #1 PetscSplitReductionApply() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:230</div>
<div>[6]PETSC ERROR: #2 PetscSplitReductionEnd() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:172</div>
<div>[6]PETSC ERROR: #3 VecNormEnd() at /Users/migmolper/petsc/src/vec/vec/utils/comb.c:553</div>
<div>[6]PETSC ERROR: #4 SNESLineSearchApply_BT() at /Users/migmolper/petsc/src/snes/linesearch/impls/bt/linesearchbt.c:88</div>
<div>[6]PETSC ERROR: #5 SNESLineSearchApply() at /Users/migmolper/petsc/src/snes/linesearch/interface/linesearch.c:645</div>
<div>[7]PETSC ERROR: #1 VecXDot_MPI_Default() at /Users/migmolper/petsc/include/../src/vec/vec/impls/mpi/pvecimpl.h:107</div>
<div>[7]PETSC ERROR: #2 VecDot_MPI() at /Users/migmolper/petsc/src/vec/vec/impls/mpi/pvec2.c:10</div>
<div>[7]PETSC ERROR: #3 VecDot() at /Users/migmolper/petsc/src/vec/vec/interface/rvector.c:120</div>
<div>[7]PETSC ERROR: #4 SNESLineSearchApply_CP() at /Users/migmolper/petsc/src/snes/linesearch/impls/cp/linesearchcp.c:28</div>
<div>[0]PETSC ERROR: #5 SNESLineSearchApply() at /Users/migmolper/petsc/src/snes/linesearch/interface/linesearch.c:645</div>
<div>[0]PETSC ERROR: #6 SNESSolve_NEWTONLS() at /Users/migmolper/petsc/src/snes/impls/ls/ls.c:234</div>
<div>[0]PETSC ERROR: #7 SNESSolve() at /Users/migmolper/petsc/src/snes/interface/snes.c:4738</div>
<div>[0]PETSC ERROR: #8 TSTheta_SNESSolve() at /Users/migmolper/petsc/src/ts/impls/implicit/theta/theta.c:174</div>
<div>[1]PETSC ERROR: #4 SNESLineSearchApply_BT() at /Users/migmolper/petsc/src/snes/linesearch/impls/bt/linesearchbt.c:88</div>
<div>[1]PETSC ERROR: #5 SNESLineSearchApply() at /Users/migmolper/petsc/src/snes/linesearch/interface/linesearch.c:645</div>
<div>[1]PETSC ERROR: #6 SNESSolve_NEWTONLS() at /Users/migmolper/petsc/src/snes/impls/ls/ls.c:234</div>
<div>[1]PETSC ERROR: #7 SNESSolve() at /Users/migmolper/petsc/src/snes/interface/snes.c:4738</div>
<div>[1]PETSC ERROR: #8 TSTheta_SNESSolve() at /Users/migmolper/petsc/src/ts/impls/implicit/theta/theta.c:174</div>
<div>[1]PETSC ERROR: #9 TSStep_Theta() at /Users/migmolper/petsc/src/ts/impls/implicit/theta/theta.c:225</div>
<div>[1]PETSC ERROR: #10 TSStep() at /Users/migmolper/petsc/src/ts/interface/ts.c:3391</div>
<div>[1]PETSC ERROR: #11 TSSolve() at /Users/migmolper/petsc/src/ts/interface/ts.c:4037</div>
<div>#5 SNESLineSearchApply() at /Users/migmolper/petsc/src/snes/linesearch/interface/linesearch.c:645</div>
<div>[2]PETSC ERROR: #6 SNESSolve_NEWTONLS() at /Users/migmolper/petsc/src/snes/impls/ls/ls.c:234</div>
<div>[2]PETSC ERROR: #7 SNESSolve() at /Users/migmolper/petsc/src/snes/interface/snes.c:4738</div>
<div>[2]PETSC ERROR: #8 TSTheta_SNESSolve() at /Users/migmolper/petsc/src/ts/impls/implicit/theta/theta.c:174</div>
<div>[2]PETSC ERROR: #9 TSStep_Theta() at /Users/migmolper/petsc/src/ts/impls/implicit/theta/theta.c:225</div>
<div>[2]PETSC ERROR: #10 TSStep() at /Users/migmolper/petsc/src/ts/interface/ts.c:3391</div>
<div>[2]PETSC ERROR: #11 TSSolve() at /Users/migmolper/petsc/src/ts/interface/ts.c:4037</div>
<div>[3]PETSC ERROR: #6 SNESSolve_NEWTONLS() at /Users/migmolper/petsc/src/snes/impls/ls/ls.c:234</div>
<div>[3]PETSC ERROR: #7 SNESSolve() at /Users/migmolper/petsc/src/snes/interface/snes.c:4738</div>
<div>[3]PETSC ERROR: #8 TSTheta_SNESSolve() at /Users/migmolper/petsc/src/ts/impls/implicit/theta/theta.c:174</div>
<div>[3]PETSC ERROR: #9 TSStep_Theta() at /Users/migmolper/petsc/src/ts/impls/implicit/theta/theta.c:225</div>
<div>[3]PETSC ERROR: #10 TSStep() at /Users/migmolper/petsc/src/ts/interface/ts.c:3391</div>
<div>[3]PETSC ERROR: #11 TSSolve() at /Users/migmolper/petsc/src/ts/interface/ts.c:4037</div>
<div>[4]PETSC ERROR: #6 SNESSolve_NEWTONLS() at /Users/migmolper/petsc/src/snes/impls/ls/ls.c:234</div>
<div>[4]PETSC ERROR: #7 SNESSolve() at /Users/migmolper/petsc/src/snes/interface/snes.c:4738</div>
<div>[4]PETSC ERROR: #8 TSTheta_SNESSolve() at /Users/migmolper/petsc/src/ts/impls/implicit/theta/theta.c:174</div>
<div>[4]PETSC ERROR: #9 TSStep_Theta() at /Users/migmolper/petsc/src/ts/impls/implicit/theta/theta.c:225</div>
<div>[4]PETSC ERROR: #10 TSStep() at /Users/migmolper/petsc/src/ts/interface/ts.c:3391</div>
<div>[4]PETSC ERROR: #11 TSSolve() at /Users/migmolper/petsc/src/ts/interface/ts.c:4037</div>
<div>#6 SNESSolve_NEWTONLS() at /Users/migmolper/petsc/src/snes/impls/ls/ls.c:234</div>
<div>[5]PETSC ERROR: #7 SNESSolve() at /Users/migmolper/petsc/src/snes/interface/snes.c:4738</div>
<div>[5]PETSC ERROR: #8 TSTheta_SNESSolve() at /Users/migmolper/petsc/src/ts/impls/implicit/theta/theta.c:174</div>
<div>[5]PETSC ERROR: #9 TSStep_Theta() at /Users/migmolper/petsc/src/ts/impls/implicit/theta/theta.c:225</div>
<div>[5]PETSC ERROR: #10 TSStep() at /Users/migmolper/petsc/src/ts/interface/ts.c:3391</div>
<div>[5]PETSC ERROR: #11 TSSolve() at /Users/migmolper/petsc/src/ts/interface/ts.c:4037</div>
<div>[6]PETSC ERROR: #6 SNESSolve_NEWTONLS() at /Users/migmolper/petsc/src/snes/impls/ls/ls.c:234</div>
<div>[6]PETSC ERROR: #7 SNESSolve() at /Users/migmolper/petsc/src/snes/interface/snes.c:4738</div>
<div>[6]PETSC ERROR: #8 TSTheta_SNESSolve() at /Users/migmolper/petsc/src/ts/impls/implicit/theta/theta.c:174</div>
<div>[6]PETSC ERROR: #9 TSStep_Theta() at /Users/migmolper/petsc/src/ts/impls/implicit/theta/theta.c:225</div>
<div>[6]PETSC ERROR: #10 TSStep() at /Users/migmolper/petsc/src/ts/interface/ts.c:3391</div>
<div>[6]PETSC ERROR: #11 TSSolve() at /Users/migmolper/petsc/src/ts/interface/ts.c:4037</div>
<div>[7]PETSC ERROR: #5 SNESLineSearchApply() at /Users/migmolper/petsc/src/snes/linesearch/interface/linesearch.c:645</div>
<div>[7]PETSC ERROR: #6 SNESSolve_NEWTONLS() at /Users/migmolper/petsc/src/snes/impls/ls/ls.c:234</div>
<div>[7]PETSC ERROR: #7 SNESSolve() at /Users/migmolper/petsc/src/snes/interface/snes.c:4738</div>
<div>[7]PETSC ERROR: #8 TSTheta_SNESSolve() at /Users/migmolper/petsc/src/ts/impls/implicit/theta/theta.c:174</div>
<div>[7]PETSC ERROR: #9 TSStep_Theta() at /Users/migmolper/petsc/src/ts/impls/implicit/theta/theta.c:225</div>
<div>[7]PETSC ERROR: #10 TSStep() at /Users/migmolper/petsc/src/ts/interface/ts.c:3391</div>
<div>[7]PETSC ERROR: #11 TSSolve() at /Users/migmolper/petsc/src/ts/interface/ts.c:4037</div>
<div>[0]PETSC ERROR: #9 TSStep_Theta() at /Users/migmolper/petsc/src/ts/impls/implicit/theta/theta.c:225</div>
<div>[0]PETSC ERROR: #10 TSStep() at /Users/migmolper/petsc/src/ts/interface/ts.c:3391</div>
<div>[0]PETSC ERROR: #11 TSSolve() at /Users/migmolper/petsc/src/ts/interface/ts.c:4037</div>
<div>[0]PETSC ERROR: #12 Mass_Transport_Master_Equation_PETSc() at /Users/migmolper/DMD/SOLERA/Chemical-eqs/Mass-Transport-PETSc.cpp:251</div>
<div>[2]PETSC ERROR: #12 Mass_Transport_Master_Equation_PETSc() at /Users/migmolper/DMD/SOLERA/Chemical-eqs/Mass-Transport-PETSc.cpp:251</div>
<div>[3]PETSC ERROR: #12 Mass_Transport_Master_Equation_PETSc() at /Users/migmolper/DMD/SOLERA/Chemical-eqs/Mass-Transport-PETSc.cpp:251</div>
<div>[1]PETSC ERROR: #12 Mass_Transport_Master_Equation_PETSc() at /Users/migmolper/DMD/SOLERA/Chemical-eqs/Mass-Transport-PETSc.cpp:251</div>
<div>[4]PETSC ERROR: #12 Mass_Transport_Master_Equation_PETSc() at /Users/migmolper/DMD/SOLERA/Chemical-eqs/Mass-Transport-PETSc.cpp:251</div>
<div>[5]PETSC ERROR: #12 Mass_Transport_Master_Equation_PETSc() at /Users/migmolper/DMD/SOLERA/Chemical-eqs/Mass-Transport-PETSc.cpp:251</div>
<div>[6]PETSC ERROR: #12 Mass_Transport_Master_Equation_PETSc() at /Users/migmolper/DMD/SOLERA/Chemical-eqs/Mass-Transport-PETSc.cpp:251</div>
<div>[7]PETSC ERROR: #12 Mass_Transport_Master_Equation_PETSc() at /Users/migmolper/DMD/SOLERA/Chemical-eqs/Mass-Transport-PETSc.cpp:251</div>
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