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Why is the above source file missing?  Make sure your petsc source tree is not corrupted.

Best to start with a fresh tarball [or git repo] - and rebuild. And if you still have issues, send us the logs

Satish

On Thu, 13 Jun 2024, Barry Smith wrote:

> 

>   Please send configure.log and make.log to petsc-maint@mcs.anl.gov without the exact details we cannot determine what has gone wrong.

> 

> 

> > On Jun 13, 2024, at 6:33 PM, s.pradeep kumar <spradeepmahadeek@gmail.com> wrote:

> > 

> > This Message Is From an External Sender

> > This message came from outside your organization.

> > Dear Petsc Development Team,

> > 

> > I am encountering an issue while trying to build Petsc library in our Cray Cluster.  Despite loading appropriate gcc and cray-mpich modules and successfully configuring Petsc, I receive the following error (see A1). I have also attached petsc configure statement (see A2) and snippet of configure log (see A3).

> > 

> > Could you please provide assistance in resolving this build issue? Any insights or additional steps I might take to diagnose and fix the problem would be greatly appreciated.

> > 

> > Thank you for your support

> > 

> > Regards,

> > 

> > Pradeep

> > 

> >  

> >  

> > 

> > A1.Error from make.log:

> > 

> >  

> > ==========================================

> > /usr/bin/gmake --print-directory -f gmakefile -j88 -l272.0 --output-sync=recurse V= libs

> > gmake[3]: *** No rule to make target '/$NETWORK$/users/$USERNAME$/NumLib/petsc-3.21.1/src/sys/f90-mod/petscsysmod.F90', needed by 'gnu-opt/obj/src/sys/f90-mod/petscsysmod.o'.  Stop.

> > gmake[2]: *** [/users/$USERNAME$/NumLib/petsc-3.21.1/lib/petsc/conf/rules_doc.mk:5 <<a href="https://urldefense.us/v3/__http://rules_doc.mk:5__;!!G_uCfscf7eWS!bzt6Ug_Q99IAVZ3YC6uReptvtUbsmvjz5BTANuRoXR9Ap8p-lmK9vgI05Bc1978HvYN2t63u7h4OQCvKWLfZ2bAtjgAjZzjQ$>:">https://urldefense.us/v3/__http://rules_doc.mk:5__;!!G_uCfscf7eWS!bzt6Ug_Q99IAVZ3YC6uReptvtUbsmvjz5BTANuRoXR9Ap8p-lmK9vgI05Bc1978HvYN2t63u7h4OQCvKWLfZ2bAtjgAjZzjQ$>:</a>libs] Error 2

> > **************************ERROR*************************************

> >   Error during compile, check gnu-opt/lib/petsc/conf/make.log

> >   Send it and gnu-opt/lib/petsc/conf/configure.log to petsc-maint@mcs.anl.gov <mailto:petsc-maint@mcs.anl.gov>

> > ********************************************************************

> > Finishing make run at Thu, 13 Jun 2024 11:42:44 -0600

> > 

> > A2.Configure Statement:

> > 

> > ./configure --with-scalar-type=real --with-precision=double --download-metis=$metis_path --download-metis-use-doubleprecision=1  --download-parmetis=$parmetis_path  --with-cmake=1  --with-mpi-dir=$MPI_DIR --download-fblaslapack=$fblaslapack_path --with-debugging=0 COPTFLAGS=-O2 FOPTFLAGS=-O2

> > 

> > Where the paths are defined:

> > 

> > fblaslapack_path="/users/$USERNAME$/NumLib/ExternalPackages/petsc-pkg-fblaslapack-e8a03f57d64c.tar.gz"

> > metis_path="/users/$USERNAME$/NumLib/ExternalPackages/petsc-pkg-metis-69fb26dd0428.tar.gz"

> > parmetis_path="/users/$USERNAME$/NumLib/ExternalPackages/petsc-pkg-parmetis-f5e3aab04fd5.tar.gz"

> > 

> > MPI_DIR=${CRAY_MPICH_PREFIX}

> > 

> >  

> >  

> >  

> > A3. Snippets From configure.log:

> >  

> > ---------------------------------------------------------------------------------------------

> > PETSc:

> >   Build         : Set default architecture to gnu-opt in lib/petsc/conf/petscvariables

> >   File creation : Created gnu-opt/lib/petsc/conf/reconfigure-gnu-opt.py for automatic reconfiguration

> > Framework:

> >   RDict update  : Substitutions were stored in RDict with parent None

> >   File creation : Created makefile configure header gnu-opt/lib/petsc/conf/petscvariables

> >   File creation : Created makefile configure header gnu-opt/lib/petsc/conf/petscrules

> >   File creation : Created configure header gnu-opt/include/petscconf.h

> >   File creation : Created C specific configure header gnu-opt/include/petscfix.h

> >   File creation : Created configure pkg header gnu-opt/include/petscpkg_version.h

> > Compilers:

> >   C Compiler:         /opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3/bin/mpicc  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -O2

> >     Version: gcc (GCC) 12.2.0 20220819 (HPE)

> >   C++ Compiler:         /opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3/bin/mpicxx  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O  -std=gnu++20 -fPIC

> >     Version: g++ (GCC) 12.2.0 20220819 (HPE)

> >   Fortran Compiler:         /opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3/bin/mpif90  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -O2

> >     Version: GNU Fortran (GCC) 12.2.0 20220819 (HPE)

> > Linkers:

> >   Shared linker:   /opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3/bin/mpicc  -shared  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -O2

> >   Dynamic linker:   /opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3/bin/mpicc  -shared  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -O2

> >   Libraries linked against:   -lquadmath -ldl

> > BlasLapack:

> >   Libraries:  -Wl,-rpath,/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/lib -L/users/$USERNAME$ /NumLib/petsc-3.21.1/gnu-opt/lib -lflapack -lfblas

> >   uses 4 byte integers

> > MPI:

> >   Version:    3

> >   Includes:   -I/opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3/include

> >   mpiexec: /bin/false

> >   Implementation: mpich3

> >   MPICH_NUMVERSION: 30400002

> > X:

> >   Libraries:  -lX11

> > python:

> >   Executable: /usr/bin/python3

> > pthread:

> >   Libraries:  -lpthread

> > cmake:

> >   Version:    3.23.1

> >   Executable: /usr/projects/hpcsoft/tce/23-03/cray-sles15-x86_64_v3-slingshot-none/packages/cmake/cmake-3.23.1/bin/cmake

> > fblaslapack:

> > metis:

> >   Version:    5.1.0

> >   Includes:   -I/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/include

> >   Libraries:  -Wl,-rpath,/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/lib -L/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/lib -lmetis

> > parmetis:

> >   Version:    4.0.3

> >   Includes:   -I/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/include

> >   Libraries:  -Wl,-rpath,/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/lib -L/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/lib -lparmetis

> > regex:

> > bison:

> >   Version:    3.0

> >   Executable: /usr/bin/bison

> > PETSc:

> >   Language used to compile PETSc: C

> >   PETSC_ARCH: gnu-opt

> >   PETSC_DIR: /users/$USERNAME$/NumLib/petsc-3.21.1

> >   Prefix: <inplace installation>

> >   Scalar type: real

> >   Precision: double

> >   Support for __float128

> >   Integer size: 4 bytes

> >   Single library: yes

> >   Shared libraries: yes

> >   Memory alignment from malloc(): 16 bytes

> >   Using GNU make: /usr/bin/gmake

> > xxx=======================================================================================xxx

> >  Configure stage complete. Now build PETSc libraries with:

> >    make PETSC_DIR=/users/$USERNAME$/NumLib/petsc-3.21.1 PETSC_ARCH=gnu-opt all

> > xxx=======================================================================================xxx

> > ================================================================================

> > Finishing configure run at Thu, 13 Jun 2024 11:42:35 -0600

> 

> 

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