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 Try without this line CALL PetscViewerPushFormat(viewer, PETSC_VIEWER_DEFAULT, ier) it shouldn't matter but worth trying. On Jun 6, 2024, at 9: 50 AM, Klaij, Christiaan <C. Klaij@ marin. nl> wrote:  ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍
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          This Message Is From an External Sender
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          This message came from outside your organization.
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        This Message Is From an External Sender
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This message came from outside your organization.
      </div>

    </div>

    <div style="clear: both !important; display: block !important; visibility: hidden !important; line-height: 0 !important; font-size: 0.01px !important; height: 0px"> </div>
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<![endif]>

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<meta http-equiv="content-type" content="text/html; charset=utf-8"></head><body style="overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;"><div><br></div>   Try without this line <span style="font-family: sans-serif; text-wrap-mode: wrap;">CALL PetscViewerPushFormat(viewer, PETSC_VIEWER_DEFAULT, ier)</span><div><font face="sans-serif">it shouldn't matter but worth trying. </font></div><div><div><br><blockquote type="cite"><div>On Jun 6, 2024, at 9:50 AM, Klaij, Christiaan <C.Klaij@marin.nl> wrote:</div><br class="Apple-interchange-newline"><div><meta charset="UTF-8"><div dir="ltr" id="pfptBanner2kwt260" style="color-scheme: revert !important; writing-mode: revert !important; -webkit-ruby-position: revert !important; color: revert !important; font-family: revert !important; font-feature-settings: revert !important; font-kerning: revert !important; font-optical-sizing: revert !important; font-palette: revert !important; font-size: revert !important; font-size-adjust: revert !important; font-stretch: revert !important; font-style: revert !important; font-synthesis-small-caps: revert !important; font-synthesis-style: revert !important; font-synthesis-weight: revert !important; font-variant-alternates: revert !important; font-variant-caps: revert !important; font-variant-east-asian: revert !important; font-variant-emoji: revert !important; font-variant-ligatures: revert !important; font-variant-numeric: revert !important; font-variant-position: revert !important; font-variation-settings: revert !important; font-weight: revert !important; text-orientation: revert !important; text-rendering: revert !important; zoom: revert !important; -webkit-font-smoothing: revert !important; -webkit-locale: revert !important; -webkit-text-size-adjust: revert !important; -webkit-text-zoom: revert !important; letter-spacing: revert !important; text-autospace: revert !important; text-spacing-trim: revert !important; accent-color: revert !important; align-content: revert !important; align-items: revert !important; align-self: revert !important; alignment-baseline: revert !important; alt: revert !important; animation-composition: revert !important; animation: revert !important; animation-timeline: revert !important; appearance: revert !important; aspect-ratio: revert !important; backface-visibility: revert !important; background-attachment: revert !important; background-blend-mode: revert !important; background-image: revert !important; background-position: revert !important; background-repeat: revert !important; background-size: revert !important; baseline-shift: revert !important; block-step-insert: revert !important; block-step-size: revert !important; border-collapse: revert !important; border-image: revert !important; box-sizing: revert !important; break-after: revert !important; break-before: revert !important; break-inside: revert !important; buffered-rendering: revert !important; caption-side: revert !important; caret-color: revert !important; clear: revert !important; clip: revert !important; clip-path: revert !important; clip-rule: revert !important; color-interpolation: revert !important; color-interpolation-filters: revert !important; column-count: revert !important; column-fill: revert !important; column-gap: revert !important; column-rule-color: revert !important; column-rule-style: revert !important; column-rule-width: revert !important; column-span: revert !important; column-width: revert !important; contain: revert !important; container-name: revert !important; container-type: revert !important; content: revert !important; content-visibility: revert !important; counter-increment: revert !important; counter-reset: revert !important; counter-set: revert !important; cursor: revert !important; cx: revert !important; cy: revert !important; dominant-baseline: revert !important; empty-cells: revert !important; fill: revert !important; fill-opacity: revert !important; fill-rule: revert !important; filter: revert !important; flex: revert !important; flex-flow: revert !important; float: revert !important; flood-color: revert !important; flood-opacity: revert !important; glyph-orientation-horizontal: revert !important; glyph-orientation-vertical: revert !important; grid: revert !important; grid-column-end: revert !important; grid-column-start: revert !important; grid-row-end: revert !important; grid-row-start: revert !important; hanging-punctuation: revert !important; hyphenate-character: revert !important; hyphens: revert !important; image-orientation: revert !important; image-rendering: revert !important; input-security: revert !important; isolation: revert !important; justify-content: revert !important; justify-items: revert !important; justify-self: revert !important; kerning: revert !important; lighting-color: revert !important; line-break: revert !important; line-height: revert !important; list-style: revert !important; margin-trim: revert !important; marker: revert !important; mask: rever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 !important; font-synthesis-style: unset !important; font-synthesis-weight: unset !important; font-variant-alternates: unset !important; font-variant-caps: unset !important; font-variant-east-asian: unset !important; font-variant-ligatures: unset !important; font-variant-numeric: unset !important; font-variant-position: unset !important; font-variation-settings: unset !important; font-weight: unset !important; text-orientation: unset !important; text-rendering: unset !important; zoom: unset !important; -webkit-font-smoothing: unset !important; -webkit-locale: unset !important; -webkit-text-zoom: unset !important; letter-spacing: unset !important; accent-color: unset !important; align-content: unset !important; align-items: unset !important; align-self: unset !important; alignment-baseline: unset !important; alt: unset !important; animation-composition: unset !important; animation: unset !important; appearance: unset !important; aspect-ratio: unset !important; backface-visibility: unset !important; background-attachment: unset !important; background-blend-mode: unset !important; background-image: unset !important; background-position: unset !important; background-repeat: unset !important; background-size: unset !important; baseline-shift: unset !important; border-collapse: unset !important; border: unset !important; box-sizing: unset !important; break-after: unset !important; break-before: unset !important; break-inside: unset !important; buffered-rendering: unset !important; caption-side: unset !important; caret-color: unset !important; clear: unset !important; clip: unset !important; clip-path: unset !important; clip-rule: unset !important; color-interpolation: unset !important; color-interpolation-filters: unset !important; column-count: unset !important; column-fill: unset !important; column-gap: unset !important; column-rule-color: unset !important; column-rule-style: unset !important; column-rule-width: unset !important; column-span: unset !important; column-width: unset !important; contain: unset !important; container-name: unset !important; container-type: unset !important; content: unset !important; counter-increment: unset !important; counter-reset: unset !important; counter-set: unset !important; cursor: unset !important; cx: unset !important; cy: unset !important; dominant-baseline: unset !important; empty-cells: unset !important; fill: unset !important; fill-opacity: unset !important; fill-rule: unset !important; filter: unset !important; flex: unset !important; flex-flow: unset !important; float: unset !important; flood-color: unset !important; flood-opacity: unset !important; glyph-orientation-horizontal: unset !important; glyph-orientation-vertical: unset !important; grid: unset !important; grid-column-end: unset !important; grid-column-start: unset !important; grid-row-end: unset !important; grid-row-start: unset !important; hanging-punctuation: unset !important; hyphenate-character: unset !important; hyphens: unset !important; image-orientation: unset !important; image-rendering: unset !important; isolation: unset !important; justify-content: unset !important; justify-items: unset !important; justify-self: unset !important; kerning: unset !important; lighting-color: unset !important; line-break: unset !important; line-height: 18px !important; list-style: unset !important; margin-trim: unset !important; marker: unset !important; mask: unset !important; mask-type: unset !important; math-style: unset !important; mix-blend-mode: unset !important; object-fit: unset !important; object-position: unset !important; offset-anchor: unset !important; offset-distance: unset !important; offset-path: unset !important; offset-position: unset !important; offset-rotate: unset !important; order: unset !important; orphans: unset !important; outline: unset !important; outline-offset: unset !important; overflow-wrap: unset !important; overflow: unset !important; page: unset !important; paint-order: unset !important; perspective: unset !important; perspective-origin: unset !important; pointer-events: unset !important; position: unset !important; print-color-adjust: unset !important; quotes: unset !important; r: unset !important; resize: unset !important; rotate: unset !important; row-gap: unset !important; rx: unset !important; ry: unset !important; scale: unset !important; scroll-behavior: unset !important; scroll-snap-align: unset !important; scroll-snap-stop: unset !important; scroll-snap-type: unset !important; shape-image-threshold: unset !important; shape-margin: unset !important; shape-outside: unset !important; shape-rendering: unset !important; size: unset !important; speak-as: unset !important; stop-color: unset !important; stop-opacity: unset !important; stroke: unset !important; stroke-color: unset !important; stroke-dasharray: unset !important; stroke-dashoffset: unset !important; stroke-linecap: unset !important; stroke-linejoin: unset !important; stroke-miterlimit: unset !important; stroke-opacity: unset !important; stroke-width: unset !important; tab-size: unset !important; table-layout: unset !important; text-align: unset !important; text-align-last: unset !important; text-anchor: unset !important; text-decoration-color: unset !important; text-decoration: unset !important; text-decoration-skip-ink: unset !important; text-decoration-style: unset !important; text-decoration-thickness: unset !important; text-emphasis-color: unset !important; text-emphasis-position: unset !important; text-emphasis-style: unset !important; text-indent: unset !important; text-overflow: unset !important; text-shadow: unset !important; text-transform: unset !important; text-underline-offset: unset !important; text-underline-position: unset !important; text-wrap: unset !important; touch-action: unset !important; transform: unset !important; transform-box: unset !important; transform-origin: unset !important; transform-style: unset !important; transition: unset !important; translate: unset !important; vector-effect: unset !important; vertical-align: unset !important; white-space: unset !important; widows: unset !important; will-change: unset !important; word-break: unset !important; x: unset !important; y: unset !important; z-index: unset !important; -apple-color-filter: unset !important; -apple-pay-button-style: unset !important; -apple-pay-button-type: unset !important; border-spacing: unset !important; -webkit-box-align: unset !important; -webkit-box-decoration-break: unset !important; -webkit-box-direction: unset !important; -webkit-box-flex: unset !important; -webkit-box-flex-group: unset !important; -webkit-box-lines: unset !important; -webkit-box-ordinal-group: unset !important; -webkit-box-orient: unset !important; -webkit-box-pack: unset !important; -webkit-box-reflect: unset !important; -webkit-column-axis: unset !important; -webkit-column-progression: unset !important; -webkit-cursor-visibility: unset !important; -webkit-hyphenate-limit-after: unset !important; -webkit-hyphenate-limit-before: unset !important; -webkit-hyphenate-limit-lines: unset !important; -webkit-initial-letter: unset !important; -webkit-line-align: unset !important; -webkit-line-box-contain: unset !important; -webkit-line-clamp: unset !important; -webkit-line-grid: unset !important; -webkit-line-snap: unset !important; -webkit-nbsp-mode: unset !important; -webkit-rtl-ordering: unset !important; -webkit-text-decorations-in-effect: unset !important; -webkit-text-fill-color: unset !important; -webkit-text-security: unset !important; -webkit-text-stroke-color: unset !important; -webkit-text-stroke-width: unset !important; -webkit-user-drag: unset !important; -webkit-user-modify: unset !important; -webkit-user-select: unset !important; word-spacing: unset !important; background-clip: unset !important; background-origin: unset !important; box-shadow: unset !important; mask-composite: unset !important; mask-mode: unset !important; text-combine-upright: unset !important; -webkit-backdrop-filter: unset !important; -webkit-background-clip: unset !important; -webkit-background-origin: unset !important; -webkit-box-shadow: unset !important; mask-size: unset !important; -webkit-mask: unset !important; -webkit-mask-composite: unset !important; -webkit-mask-source-type: unset !important; -webkit-text-combine: unset !important; display: block !important; visibility: visible !important; opacity: unset !important; background-color: rgb(208, 216, 220) !important; block-size: unset !important; border-block: unset !important; border-radius: unset !important; border-end-end-radius: unset !important; border-end-start-radius: unset !important; border-inline: unset !important; border-start-end-radius: unset !important; border-start-start-radius: unset !important; inset: unset !important; contain-intrinsic-block-size: unset !important; contain-intrinsic-size: unset !important; contain-intrinsic-inline-size: unset !important; height: unset !important; inline-size: unset !important; inset-block: unset !important; inset-inline: unset !important; margin-block: unset !important; margin-bottom: unset !important; margin-inline: unset !important; margin-left: unset !important; margin-right: unset !important; max-block-size: unset !important; max-height: unset !important; max-inline-size: unset !important; max-width: unset !important; min-block-size: unset !important; min-height: unset !important; min-inline-size: unset !important; min-width: unset !important; overscroll-behavior-block: unset !important; overscroll-behavior-inline: unset !important; overscroll-behavior: unset !important; padding-block: unset !important; padding: unset !important; padding-inline: unset !important; scroll-margin-block: unset !important; scroll-margin: unset !important; scroll-margin-inline: unset !important; scroll-padding-block: unset !important; scroll-padding: unset !important; scroll-padding-inline: unset !important; width: unset !important; margin-top: 2px !important;">This message came from outside your organization.</div></div><div style="height: 0px; clear: both !important; display: block !important; visibility: hidden !important; line-height: 0 !important; font-size: 0.01px !important;"></div></div><pre style="caret-color: rgb(0, 0, 0); font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-family: sans-serif; white-space: pre-wrap; overflow-wrap: break-word;">The matrix was saved as with this code:

CALL PetscViewerBinaryOpen(PETSC_COMM_WORLD, filename, FILE_MODE_WRITE, viewer, ier)
CALL PetscViewerPushFormat(viewer, PETSC_VIEWER_DEFAULT, ier)
CALL MatView(A, viewer, ier)
CALL PetscViewerDestroy(viewer, ier)

I will try again to check for file corruption

________________________________________
From: Stefano Zampini <<a href="mailto:stefano.zampini@gmail.com">stefano.zampini@gmail.com</a>>
Sent: Thursday, June 6, 2024 3:01 PM
To: Klaij, Christiaan
Cc: PETSc users list
Subject: Re: [petsc-users] matload and petsc4py

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On Thu, Jun 6, 2024, 14:53 Klaij, Christiaan <<a href="mailto:C.Klaij@marin.nl">C.Klaij@marin.nl</a><<a href="mailto:C.Klaij@marin.nl">mailto:C.Klaij@marin.nl</a>>> wrote:
I'm writing a matrix to file from my fortran code (that uses petsc-3. 19. 4) with -mat_view binary. Then, I'm trying to load this mat into python (that uses petsc-3. 21. 0). This works fine using single or multiple procs when the marix
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I'm writing a matrix to file from my fortran code (that uses petsc-3.19.4) with -mat_view binary. Then, I'm trying to load this mat into python (that uses petsc-3.21.0). This works fine using single or multiple procs when the marix was written using a single proc (attached file a_mat_np_1.dat). However, when the matrix was written using mulitple procs (attached file a_mat_n_2.dat) I get the error below. Is this supposed to work? If so, what I'm I doing wrong?


This should work. And your script seems ok too . How did you save the matrix in parallel? I suspect that file is corrupt

$ cat test_matrixImport_binary.py
import sys
import petsc4py
from petsc4py import PETSc
from mpi4py import MPI

# mat files
#filename = "./a_mat_np_1.dat" # Works
filename = "./a_mat_np_2.dat" # Doesn't work

# Initialize PETSc
petsc4py.init(sys.argv)

# Create a viewer for reading the binary file
viewer = PETSc.Viewer().createBinary(filename, mode='r', comm=PETSc.COMM_WORLD)

# Create a matrix and load data from the binary file
A = PETSc.Mat().create(comm=PETSc.COMM_WORLD)
A.load(viewer)

$ python test_matrixImport_binary.py
Traceback (most recent call last):
File "/projects/P35662.700/test_cklaij/test_matrixImport_binary.py", line 18, in <module>
A.load(viewer)
File "petsc4py/PETSc/Mat.pyx", line 2025, in petsc4py.PETSc.Mat.load
petsc4py.PETSc.Error: error code 79
[0] MatLoad() at /home/cklaij/petsc-3.21.0/src/mat/interface/matrix.c:1344
[0] MatLoad_SeqAIJ() at /home/cklaij/petsc-3.21.0/src/mat/impls/aij/seq/aij.c:5091
[0] MatLoad_SeqAIJ_Binary() at /home/cklaij/petsc-3.21.0/src/mat/impls/aij/seq/aij.c:5142
[0] Unexpected data in file
[0] Inconsistent matrix data in file: nonzeros = 460, sum-row-lengths = 761

$ mpirun -n 2 python test_matrixImport_binary.py
Traceback (most recent call last):
File "/projects/P35662.700/test_cklaij/test_matrixImport_binary.py", line 18, in <module>
Traceback (most recent call last):
File "/projects/P35662.700/test_cklaij/test_matrixImport_binary.py", line 18, in <module>
A.load(viewer)
File "petsc4py/PETSc/Mat.pyx", line 2025, in petsc4py.PETSc.Mat.load
A.load(viewer)
File "petsc4py/PETSc/Mat.pyx", line 2025, in petsc4py.PETSc.Mat.load
petsc4py.PETSc.Error: error code 79
[0] MatLoad() at /home/cklaij/petsc-3.21.0/src/mat/interface/matrix.c:1344
[0] MatLoad_MPIAIJ() at /home/cklaij/petsc-3.21.0/src/mat/impls/aij/mpi/mpiaij.c:3035
[0] MatLoad_MPIAIJ_Binary() at /home/cklaij/petsc-3.21.0/src/mat/impls/aij/mpi/mpiaij.c:3087
[0] Unexpected data in file
[0] Inconsistent matrix data in file: nonzeros = 460, sum-row-lengths = 761
petsc4py.PETSc.Error: error code 79
[1] MatLoad() at /home/cklaij/petsc-3.21.0/src/mat/interface/matrix.c:1344
[1] MatLoad_MPIAIJ() at /home/cklaij/petsc-3.21.0/src/mat/impls/aij/mpi/mpiaij.c:3035
[1] MatLoad_MPIAIJ_Binary() at /home/cklaij/petsc-3.21.0/src/mat/impls/aij/mpi/mpiaij.c:3087
[1] Unexpected data in file
[1] Inconsistent matrix data in file: nonzeros = 460, sum-row-lengths = 761


[<a href="cid:ii_18feda229ee74859a161">cid:ii_18feda229ee74859a161</a>]
dr. ir.​​​​     Christiaan       Klaij
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