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Thanks a lot. That is the only issue. /usr/lib64/openmpi/include doesn't exist. The configuration can be done without issue with the 2nd method. But when I did make, the following warning came. I will study your link. Thanks,f951: Warning:
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<div dir="ltr"><div>Thanks a lot. That is the only issue. <br></div><div><span class="gmail-im">/usr/lib64/openmpi/include doesn't exist. <br></span></div><div><span class="gmail-im"><br></span></div><div><span class="gmail-im">The configuration can be done without issue with the 2nd method. But when I did make, the following warning came. I will study your link. <br></span></div><div><span class="gmail-im"><br></span></div><div><span class="gmail-im">Thanks,<br></span></div><div><span class="gmail-im"><br></span></div><div>f951: Warning: Nonexistent include directory ‘/usr/lib64/openmpi/include’ [-Wmissing-include-dirs]<br> CC linux-gnu-c-debug/obj/src/tao/unconstrained/impls/ntl/ntl.o<br> CC linux-gnu-c-debug/obj/src/tao/util/tao_util.o<br> FC linux-gnu-c-debug/obj/src/sys/objects/f2003-src/fsrc/optionenum.o<br>f951: Warning: Nonexistent include directory ‘/usr/lib64/openmpi/include’ [-Wmissing-include-dirs]<br> CC linux-gnu-c-debug/obj/src/tao/unconstrained/impls/owlqn/owlqn.o<br> CC linux-gnu-c-debug/obj/src/tao/unconstrained/impls/ntr/ntr.o<br> CC linux-gnu-c-debug/obj/src/tao/unconstrained/impls/nls/nls.o<br> FC linux-gnu-c-debug/obj/src/dm/f90-mod/petscdmswarmmod.o<br>f951: Warning: Nonexistent include directory ‘/usr/lib64/openmpi/include’ [-Wmissing-include-dirs]<br> FC linux-gnu-c-debug/obj/src/dm/f90-mod/petscdmdamod.o<br>f951: Warning: Nonexistent include directory ‘/usr/lib64/openmpi/include’ [-Wmissing-include-dirs]<br> FC linux-gnu-c-debug/obj/src/dm/f90-mod/petscdmplexmod.o<br>f951: Warning: Nonexistent include directory ‘/usr/lib64/openmpi/include’ [-Wmissing-include-dirs]<br> FC linux-gnu-c-debug/obj/src/ksp/f90-mod/petsckspdefmod.o<br>f951: Warning: Nonexistent include directory ‘/usr/lib64/openmpi/include’ [-Wmissing-include-dirs]<br> FC linux-gnu-c-debug/obj/src/ksp/f90-mod/petscpcmod.o<br>f951: Warning: Nonexistent include directory ‘/usr/lib64/openmpi/include’ [-Wmissing-include-dirs]<br> FC linux-gnu-c-debug/obj/src/ksp/f90-mod/petsckspmod.o<br>f951: Warning: Nonexistent include directory ‘/usr/lib64/openmpi/include’ [-Wmissing-include-dirs]<br> FC linux-gnu-c-debug/obj/src/snes/f90-mod/petscsnesmod.o<br>f951: Warning: Nonexistent include directory ‘/usr/lib64/openmpi/include’ [-Wmissing-include-dirs]<br> FC linux-gnu-c-debug/obj/src/ts/f90-mod/petsctsmod.o<br>f951: Warning: Nonexistent include directory ‘/usr/lib64/openmpi/include’ [-Wmissing-include-dirs]<br> FC linux-gnu-c-debug/obj/src/tao/f90-mod/petsctaomod.o<br>f951: Warning: Nonexistent include directory ‘/usr/lib64/openmpi/include’ [-Wmissing-include-dirs]<br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Mon, May 13, 2024 at 2:07 PM Satish Balay <<a href="mailto:balay@mcs.anl.gov">balay@mcs.anl.gov</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">> Includes: -I/usr/lib64/openmpi/include (*This is not the right include directory*)<br>
<br>
So this is the only issue? Does this dir not exist? If so, you can try the following fix:<br>
<br>
<a href="https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7545__;!!G_uCfscf7eWS!c2QjEeOosTxvYgWhf7la2e2Y8u4qLZmaeLr2oVBLbPIxtR4uDBVQ984G_-0YLJTunEXOkWm2dRXZCq1GLGKAtQ$" rel="noreferrer" target="_blank">https://gitlab.com/petsc/petsc/-/merge_requests/7545</a><br>
<br>
However if this dir exists [i.e when --with-pkg-dir=DIR is specified and DIR/include exists] - configure will have no way of figuring out that this location is incorrect. And it should cause no harm to include it in compile commands.<br>
<br>
Satish<br>
<br>
<br>
On Mon, 13 May 2024, Satish Balay via petsc-users wrote:<br>
<br>
> On Mon, 13 May 2024, neil liu wrote:<br>
> <br>
> <br>
> > I also tried the 2nd way, it didn't work.<br>
> <br>
> configure.log attached is successful.<br>
> <br>
> >>>>>>>><br>
> Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --download-fblaslapack --with-mpi-dir=/usr/lib64/openmpi<br>
> <br>
> Compilers:<br>
> C Compiler: /usr/lib64/openmpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0<br>
> Version: gcc (GCC) 11.4.1 20231218 (Red Hat 11.4.1-3)<br>
> C++ Compiler: /usr/lib64/openmpi/bin/mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++20 -fPIC<br>
> Version: g++ (GCC) 11.4.1 20231218 (Red Hat 11.4.1-3)<br>
> Fortran Compiler: /usr/lib64/openmpi/bin/mpif90 -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0<br>
> Version: GNU Fortran (GCC) 11.4.1 20231218 (Red Hat 11.4.1-3)<br>
> <<<<<<br>
> <br>
> So the correct compilers from the specified mpi location /usr/lib64/openmpi got used.<br>
> <br>
> What problem are you seeing with this build?<br>
> <br>
> Satish<br>
> <br>
<br>
</blockquote></div>