Executing: uname -s stdout: Darwin ============================================================================================= Configuring PETSc to compile on your system ============================================================================================= ================================================================================ ================================================================================ Starting configure run at Mon, 06 May 2024 18:59:15 -0700 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --ignoreLinkOutput=1 LDFLAGS=-Wl,-ld_classic Working directory: /Users/wthacher/Desktop/LBL/petsc Machine platform: uname_result(system='Darwin', node='wthacher-mbp', release='23.4.0', version='Darwin Kernel Version 23.4.0: Fri Mar 15 00:10:42 PDT 2024; root:xnu-10063.101.17~1/RELEASE_ARM64_T6000', machine='arm64') Python version: 3.12.3 (main, Apr 9 2024, 08:09:14) [Clang 15.0.0 (clang-1500.3.9.4)] ================================================================================ Environmental variables MallocNanoZone=0 USER=wthacher SECURITYSESSIONID=186ab COMMAND_MODE=unix2003 __CFBundleIdentifier=com.microsoft.VSCode PATH=/Users/wthacher/.juliaup/bin:/Users/wthacher/Library/Python/3.9/bin:/Users/wthacher/Library/Python/3.9/lib/python/site-packages:/Applications/Visual\ Studio\ 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Code.app/Contents/Resources/app/bin:/Users/wthacher/Library/Python/3.8/bin:/Applications/MATLAB_R2021b.app/bin:/Applications/Julia-1.7.app/Contents/Resources/julia/bin:/Applications/VisIt.app/Contents/Resources/bin/:/opt/homebrew/bin:/opt/homebrew/sbin HOME=/Users/wthacher SHELL=/bin/zsh LaunchInstanceID=D2C6ADCE-E65F-46B3-8F37-152E9C0CDF91 __CF_USER_TEXT_ENCODING=0x1F6:0x0:0x0 XPC_SERVICE_NAME=0 SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.DFvIJeBVak/Listeners XPC_FLAGS=0x0 LOGNAME=wthacher TMPDIR=/var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/ ORIGINAL_XDG_CURRENT_DESKTOP=undefined SHLVL=1 PWD=/Users/wthacher/Desktop/LBL/petsc OLDPWD=/Users/wthacher/Desktop/LBL HOMEBREW_PREFIX=/opt/homebrew HOMEBREW_CELLAR=/opt/homebrew/Cellar HOMEBREW_REPOSITORY=/opt/homebrew MANPATH=/opt/homebrew/share/man:/usr/share/man:/usr/local/share/man:/Library/TeX/Distributions/.DefaultTeX/Contents/Man:/opt/homebrew/share/man:: INFOPATH=/opt/homebrew/share/info:/opt/homebrew/share/info: 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/Users/wthacher/Library/Python/3.9/bin: pip3.9 i-pi import_pb_to_tensorboard ase-build pyftsubset markdown_py i-pi-planetary toco_from_protos swig dul-receive-pack i-pi-mux-positions i-pi-mergebeadspdb ase ttx pip3 i-pi-remdsort isympy torchrun fonttools wb convert-onnx-to-caffe2 i-pi-py_driver i-pi-contract-trajectory ase-info tf_upgrade_v2 swig4.0 ase-run f2py pip comet i-pi-paraweights jsonschema wsdump i-pi-trimsim tqdm i-pi-get_Ascp markdown-it pygmentize tensorboard i-pi-gleacf i-pi-getproperty pip3.10 i-pi-posforce2kinetic i-pi-kinetic2tag tflite_convert dul-upload-pack i-pi-getacf convert-caffe2-to-onnx i-pi-style normalizer saved_model_cli toco pyftmerge ase-db i-pi-committee-reweight wandb ase-gui i-pi-tests dulwich /Users/wthacher/Library/Python/3.9/lib/python/site-packages: importlib_metadata-7.1.0.dist-info semantic_version-2.10.0.dist-info comet_ml async_timeout mdurl packaging opt_einsum keras kiwisolver-1.4.5.dist-info sympy-1.11.1.dist-info aiohttp 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pquery psicc djxl_fuzzer_corpus recode-sr-latin glib-gettextize xzcmp pamtofits gouldtoppm giftool lzcat pnmtorle svnversion pamoil pbmtoibm23xx jpgicc sfdp gc pgmmedian hwloc-diff gdk-pixbuf-thumbnailer h2xs pammixinterlace pbmtopsg3 lstopo-no-graphics fc-cache unlz4 ppmtopj pampop9 db_checkpoint pnmremap hwloc-ps gdbus pcxtoppm zstdmt fc-cat pod2man ppmtospu enc2xs ppmcolors ppmtoleaf lzdiff h5redeploy pgmtost4 dijkstra perl5.38.2 pnmtopnm pgmedge pamvalidate pps gdbmtool sbigtopgm msgexec gvmap.sh pamtotiff gcov-tool-13 glib-genmarshal ngettext ppmhist dot_builtins prune winicontoppm h5debug pgmmorphconv pamlookup dwebp xbmtopbm ppmtoyuv ppmtomap pgmcrater oshrun ifnames pnmalias pnmcolormap pammixmulti pgmtopbm rsvg-convert pbmto10x pamtoqoi tjbench ppmtopcx gd2copypal ppmrough ppmmake lzmadec ph5diff pnmmercator stl2gts rgb3toppm fc-match pnmgamma infotopam svnbench h5repart lzgrep gts-config msgunfmt pnmtoplainpnm cpp-13 pamdeinterlace pamgradient h5import pnmsplit db_deadlock 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perlthanks5.34 hiutil ip2cc5.30 json_xs5.34 pip3 pod2man5.34 lastwords rmid sed ld dbilogstrip5.30 awk ip2cc syscallbyproc.d umtool snmpstatus uudecode psm fmt zless enc2xs5.34 xslt-config sdef ncctl jmc pod2text bashbug mail yamlpp-parse-emit5.30 chpass sips par5.34.pl xcrun bzcmp lldb chfn ipcount newaliases nano lam pod2readme5.30 ipptool irb ptardiff bzless sysdiagnose logname tset chgrp cu printenv yamlpp-load-dump5.30 unvis shasum5.30 atq seq fc AssetCacheManagerUtil xgettext5.34.pl colldef net-server5.30 jdb perl5.30 wish uname hpmdiagnose timer_analyser.d jstack parl unzip db_stat rmiregistry json_pp test-yaml ptardiff5.30 zprint kinit mib2c od bsdtar perl findrule tbtdiagnose mcxquery lwp-download ppdpo crontab reset kextutil par5.30.pl bzcat dbicadmin ex perlbug jvisualvm footprint lsappinfo lwp-download5.34 db_load fwkdp piconv read snmpusm tkpp5.34 test-yaml5.34 execsnoop pagesize lp base64 ptargrep jar h2ph readlink opensnoop rake rvim jcmd dmc vimtutor prove5.34 spfquery5.34 perlivp5.34 perldoc5.30 xgettext5.30.pl iperf3-darwin prove newproc.d gencat mdutil znew podchecker mcxrefresh colrm dbilogstrip pagestuff crlrefresh headerdoc2html jrunscript pp5.34 filtercalltree afhash sandbox-exec snmpvacm stapler codecctl fwkpfv sftp wc jps rsync osacompile yamlpp-load5.30 hdxml2manxml gzcat delv thermal pico IOMFB_FDR_Loader shasum comm mpsgraphtool resolveLinks xcdebug dbicadmin5.30 lpq java bundle gzip yamlpp-events5.30 zipcloak git-upload-archive xml2-config encode_keychange traptoemail gcc smbutil diff ri agvtool cksum corelist5.34 segedit zipnote ptar printf iptab5.34 AssetCacheTetheratorUtil column ldapexop ippfind syscallbysysc.d groups dwarfdump ppdc rs spfd config_data slogin latency lsm h2ph5.30 xar db_codegen lwp-request5.34 dns-sd tab2space avconvert xsubpp5.30 jhsdb unzipsfx crc325.34 treereg parl5.30 spfd5.34 csreq whatis gperf iconutil zipsplit lwp-dump pathopens.d tail whois nsupdate crc32 ldapdelete grep macerror5.34 moose-outdated5.30 rwbytype.d script pod2text5.30 vtool more ldapwhoami pl2pm ncinit tkmib cal afplay time ssh-agent afktool gcore javap xed uuname javaws ptar5.34 findrule5.34 env pr h2xs5.34 head dsymutil clear manpath apropos units curl-config htmltree5.34 lwp-mirror5.34 ptargrep5.34 kgetcred rev SplitForks uniq tclsh binhex5.30.pl shazam productsign mklocale defaults tic zip uulog pl2pm5.34 atrm curl wdutil agentxtrap db_verify servertool newgrp pod2usage5.34 timerfires rpcgen swcutil perlthanks dbiprof5.34 parldyn5.30 snmpnetstat package-stash-conflicts5.34 lastcomm getconf kpasswd dist_package_tool vis dbiproxy ipcrm bputil net-snmp-config otool lwp-dump5.30 killall patch tailspin su ul compression_tool dbiproxy5.30 tkcon ssh kdestroy yapp5.30 snmpgetnext type xsubpp jhat tidy tftp assetutil AssetCacheLocatorUtil orbd usbcfwflasher streamzip networkQuality ktrace DeRez textutil xgettext.pl automator wsgen stat perldoc javac xcsdiagnose mdfind mdls codesign_allocate binhex5.34.pl mddiagnose snmpbulkwalk keytool tidy_changelog5.34 fileproviderctl binhex.pl IOSDebug dtruss dserr tiff2icns mandoc pbpaste policytool yamlpp-highlight5.34 actool xpath5.34 heap sum lskq macbinary ncdestroy nc json_pp5.34 snmptrap tsort uuencode cpp swift batch sqlite3 make pod2html5.34 dig zipdetails5.30 macerror infocmp eslogger apt trimforce nm flex++ osadecompile IOAccelMemory config_data5.30 automationmodetool ssh-add machine encguess5.30 libnetcfg5.34 wish8.5 screen snmpget piconv5.30 pcsctest codesign atos llvm-gcc mailq arch ssh-keygen snmptable kill.d ditto getopts users snmpbulkget ipcount5.30 sdp perlbug5.30 cpan5.34 treereg5.34 showmount taskinfo ar who mktemp unifdef yaa cut imptrace pack200 ippeveprinter hdid dc mailx odutil jsadebugd shortcuts xargs tkpp priclass.d topsysproc nl podchecker5.30 view jjs spfquery sample bg lipo seeksize.d eyapp clang++ setuids.d instmodsh5.34 aa shlock symbols perlthanks5.30 xctrace pod2man5.30 gzexe json_xs5.30 ip2cc5.34 usbdiagnose 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db_deadlock syspolicy_check ldapcompare unexpand prove5.30 perlivp5.30 git-upload-pack perldoc5.34 ssh-copy-id fixproc debinhex.pl lorder ranlib ptardiff5.34 javadoc tput fgrep par.pl sigdist.d ppdhtml auval erb dappprof openssl yamlpp-load drutil jinfo lwp-download5.30 splain pmset xmlcatalog zcmp rwsnoop jstatd lpr layerutil dbicadmin5.34 snmptest mib2c-update creatbyproc.d fdesetup flex hostinfo jcontrol lpstat SetFile pod2html tar yamlpp-events5.34 rdoc uptime pidpersec.d schemagen avmediainfo corelist5.30 iptab5.30 cvcp false zegrep memory_pressure pp5.30 uncompress lwp-request ncurses5.4-config sampleproc db_recover dyld_usage nmedit filebyproc.d bison tclsh8.5 jdeps productbuild zipinfo diffstat yamlpp-load5.34 login db_dump cpuctl cpu_profiler.d which bundler iopattern finger mig sntp klist open GetFileInfo kmutil localedef ruby stringdups htmltree git tr banner leave jconsole paste bzip2 uucp passwd moose-outdated5.34 macerror5.30 uuidgen install_name_tool cmpdylib pod2text5.34 zfgrep aea snfsdefrag zipdetails look col dscacheutil syscapturediags lwp-request5.30 zforce lwp-mirror malloc_history cpio h2ph5.34 nohup kcc ulimit rails bspatch hotspot.d cvaffinity xsubpp5.34 gatherheaderdoc ppdi pcap-config jpackage avmetareadwrite gen_bridge_metadata parl5.34 gem spfd5.30 opendiff crc325.30 talk expect jimage lockstat dapptrace xattr w gunzip /bin: cat echo launchctl df pwd test csh wait4path unlink sleep stty date realpath ed expr pax bash kill sh ps link tcsh dd mkdir ksh hostname dash rmdir mv ln ls cp sync zsh chmod rm [ /usr/sbin: dsconfigad htdbm netbiosd postlock systemsoundserverd dseditgroup avbdeviced rpcinfo BootCacheControl weakpass_edit periodic accton wfsctl postalias slapacl edquota sndiskmove pdisk amt lpadmin fdisk sysadminctl networksetup envvars ktutil setquota otctl dnctl mDNSResponder iRATBW.mlmodelc repquota cupsfilter checkgid uuconv sharing vifs ac racoon dsenableroot xsanctl kdcsetup aslmanager screencapture htdigest chat DevToolsSecurity logresolve cvdbset KernelEventAgent gpt scutil ioreg ab traceroute6 pwd_mkdb sysctl appsleepd sshd mDNSResponderHelper authserver appleh13camerad postmulti lsof pkgutil slapindex sc_auth ioclasscount uucico firmwarepasswd rarpd tsig-keygen kadmin.local syslogd taskpolicy BTLEServerAgent filecoordinationd dot_clean PasswordService systemsetup zdump snmpd ndp coreaudiod rpcbind praudit BTLEServer usernoted postkick postcat netstat lpc slapadd krbservicesetup slapconfig rtadvd httxt2dbm distnoted mtree cupsdisable lpmove purge rpc.statd cupsctl DirectoryService notifyd klist_cdhashes dtrace kextcache cupsd dbmmanage languagesetup skywalkctl mkpassdb postconf createhomedir ocspd iostat cvdb sa rpc.lockd uuxqt mkfile softwareupdate unsetpassword zic nfs4mapid postsuper htpasswd rotatelogs universalaccessd audit httpd slapauth slappasswd localemanager asr cvupdatefs bless cvgather xscertadmin visudo uusched dsconfigldap smbdiagnose cfprefsd auditd uuchk cvfsck kextfind diskutil cvfsid appleh16camerad sso_util vsdbutil sntpd ddns-confgen ioalloccount uasysdiagnose dev_mkdb hdik slapdn vpnd postqueue setkey repairHomePermissions spindump cupsreject traceroute quotaoff newsyslog postfix cvfsdb snmptrapd chroot arp cupsaccept nvram chown mkextunpack postlog installer pppd httpd-wrapper system_profiler fcgistarter bluetoothd slapschema kadmin spray cvversions kextlibs tcpdump xartutil securityd nlcontrol quotaon spctl vipw gssd slaptest automount scselect envvars-std graphicssession ckksctl lpinfo smbd serverinfo cvmkfs postmap postdrop cupsenable cron systemstats kextstat snquota cvlabel BlueTool sendmail systemkeychain kcditto slapcat ipconfig auditreduce cvadmin WirelessRadioManagerd apachectl htcacheclean /sbin: mount_hfs mount_apfs md5 fsck mount_udf quotacheck mount_cd9660 ping fsck_exfat mount_exfat fsck_udf shutdown route mount_webdav fsck_hfs nfsd reboot nfsiod fsck_cs fsck_apfs fstyp_msdos disklabel mount_lifs mount_msdos fsck_msdos ifconfig halt mount_9p newfs_apfs umount fstyp kextunload mpioutil fstyp_ntfs mount_nfs newfs_udf mount_ftp pfctl mknod fstyp_udf dmesg mount fibreconfig fstyp_hfs newfs_hfs dynamic_pager launchd newfs_exfat apfs_unlockfv apfs_hfs_convert nologin mount_afp mount_virtiofs mount_smbfs mount_tmpfs ping6 kextload mount_cddafs mount_fdesc newfs_msdos mount_acfs mount_devfs Warning accessing /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin gives errors: [Errno 2] No such file or directory: '/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin' Warning accessing /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin gives errors: [Errno 2] No such file or directory: '/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin' Warning accessing /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin gives errors: [Errno 2] No such file or directory: '/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin' Warning accessing /Library/Apple/usr/bin gives errors: [Errno 2] No such file or directory: '/Library/Apple/usr/bin' /Library/TeX/texbin: luajittex lollipop t1disasm chktex rubikrotation lily-rebuild-pdfs weave mag man ebb prepmx mktexlsr gsftopk upmendex dvibook kpsewhere rumakeindex fontinst cef5conv lacheck httexi lily-image-commands texloganalyser dvilj patgen uptex exceltex pdvitype texconfig-sys xmltex vlna texsis dvipdft urlbst pdfcslatex afm2afm cefconv uplatex-dev sjisconv tex2xindy musixtex pdfcsplain opl2ofm de-macro bbl2bib ltx2crossrefxml pdftex r-mpost dvitodvi gftodvi dviconcat texluajitc dvipng pdflatex-dev komkindex tex sty2dtx ppltotf yplan eplain eptex lily-glyph-commands htmex texlua htxelatex xasy fmtutil-user wovp2ovf dvilualatex cefsconv context platex allec adhocfilelist kpsetool makejvf texdoctk xelatex-dev vptovf tex4ht texluajit mtxrunjit uplatex musixflx pfarrei mf 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ttf2pk tpic2pdftex kanji-config-updmap-user psjoin m-tx uppltotf texdoc bbox dvired latex-papersize makeglossaries-lite t4ht xdvi ps2frag wopl2ofm devnag ctanupload texexec listbib cllualatex lualatex pmxab jfmutil tikztosvg xml2pmx pdfmex tftopl spix mltex amstex pbibtex pstops optex mex bibdoiadd updmap dvipos luaotfload-tool epspdftk updmap-sys r-upmpost mktextfm texfot checklistings rpdfcrop a5toa4 installfont-tl pdfcrop pdfannotextractor /Users/wthacher/.juliaup/bin: juliaup julialauncher julia /Users/wthacher/Library/Python/3.9/bin: pip3.9 i-pi import_pb_to_tensorboard ase-build pyftsubset markdown_py i-pi-planetary toco_from_protos swig dul-receive-pack i-pi-mux-positions i-pi-mergebeadspdb ase ttx pip3 i-pi-remdsort isympy torchrun fonttools wb convert-onnx-to-caffe2 i-pi-py_driver i-pi-contract-trajectory ase-info tf_upgrade_v2 swig4.0 ase-run f2py pip comet i-pi-paraweights jsonschema wsdump i-pi-trimsim tqdm i-pi-get_Ascp markdown-it pygmentize tensorboard i-pi-gleacf i-pi-getproperty pip3.10 i-pi-posforce2kinetic i-pi-kinetic2tag tflite_convert dul-upload-pack i-pi-getacf convert-caffe2-to-onnx i-pi-style normalizer saved_model_cli toco pyftmerge ase-db i-pi-committee-reweight wandb ase-gui i-pi-tests dulwich /Users/wthacher/Library/Python/3.9/lib/python/site-packages: importlib_metadata-7.1.0.dist-info semantic_version-2.10.0.dist-info comet_ml async_timeout mdurl packaging opt_einsum keras kiwisolver-1.4.5.dist-info sympy-1.11.1.dist-info aiohttp absl_py-2.1.0.dist-info cycler networkx torch_cluster-1.6.3.dist-info validate Jinja2-3.1.2.dist-info websocket markupsafe smmap-5.0.1.dist-info sentry_sdk-1.40.5.dist-info termcolor-2.4.0.dist-info aiosignal-1.3.1.dist-info PyYAML-6.0.1.dist-info clang tensorboard_data_server box pygments-2.17.2.dist-info swig wurlitzer-3.0.3.dist-info attrs sympy threadpoolctl.py python_dateutil-2.8.2.dist-info tqdm-4.66.2.dist-info pygments semantic_version astunparse-1.6.3.dist-info threadpoolctl-3.3.0.dist-info rpds ipi ase tensorflow_io_gcs_filesystem contourpy-1.2.0.dist-info scikit_learn-1.4.1.post1.dist-info pylab.py everett-3.1.0.dist-info referencing-0.33.0.dist-info grpcio-1.62.1.dist-info google_pasta-0.2.0.dist-info grpc mpi4py mpmath pyparsing configobj-5.0.8.dist-info torchaudio-2.2.0.dev20240220.dist-info pip-24.0.dist-info aiohttp-3.9.3.dist-info jinja2 Pillow-9.3.0.dist-info gitdb-4.0.11.dist-info fast_matrix_market frozenlist jsonschema_specifications-2023.12.1.dist-info markdown_it_py-3.0.0.dist-info dockerpycreds multidict-6.0.5.dist-info fsspec filelock-3.9.0.dist-info markdown google swig-4.2.1.dist-info referencing attrs-23.2.0.dist-info include setproctitle configobj torchvision gast torch_cluster namex-0.0.7.dist-info simplejson markdown_it rich-13.7.1.dist-info wurlitzer.py Markdown-3.6.dist-info torch-2.3.0.dev20240220.dist-info absl GitPython-3.1.42.dist-info optree-0.11.0.dist-info fontTools ml_dtypes-0.3.2.dist-info idna importlib_metadata werkzeug torio sentry_sdk numpy-1.26.4.dist-info click requests_toolbelt torch mpmath-1.2.1.dist-info zipp packaging-23.2.dist-info appdirs-1.4.4.dist-info mpl_toolkits filelock fast_matrix_market-1.7.6.dist-info docs async_timeout-4.0.3.dist-info wrapt dulwich-0.21.7.dist-info numpy yarl-1.9.4.dist-info pasta protobuf-4.25.3.dist-info charset_normalizer optree PIL simplejson-3.19.2.dist-info requests setproctitle-1.3.3.dist-info flatbuffers-24.3.7.dist-info termcolor appdirs.py torch_sparse-0.6.18.dist-info gast-0.5.4.dist-info comet_ml-3.39.0.dist-info multidict pip requests-2.31.0.dist-info h5py sklearn networkx-3.0rc1.dist-info importlib_resources smmap contourpy torchvision-0.18.0.dev20240220.dist-info lmdb joblib certifi mdurl-0.1.2.dist-info attr everett PyMFEM jsonschema typing_extensions-4.8.0.dist-info charset_normalizer-3.3.2.dist-info urllib3-2.2.1.dist-info tqdm joblib-1.3.2.dist-info torch_geometric torch_scatter-2.1.2.dist-info kiwisolver tensorboard-2.16.2.dist-info psutil-5.9.8.dist-info tensorflow isympy.py zipp-3.17.0.dist-info _yaml tensorflow-2.16.1.dist-info tensorboard libclang-18.1.1.dist-info mpi4py-3.1.5.dist-info certifi-2024.2.2.dist-info torch_geometric-2.5.0.dist-info ipi-2.6.0.dist-info werkzeug-3.0.1.dist-info torchaudio cycler-0.12.1.dist-info rich torchdiffeq-0.2.3.dist-info lib importlib_resources-6.1.1.dist-info matplotlib yaml rpds_py-0.18.0.dist-info pyparsing-3.1.1.dist-info namex h5py-3.10.0.dist-info ase-3.22.1.dist-info wandb-0.16.3.dist-info torchgen urllib3 frozenlist-1.4.1.dist-info flatbuffers opt_einsum-3.3.0.dist-info docker_pycreds-0.4.0.dist-info requests_toolbelt-1.0.0.dist-info jsonschema_specifications lmdb-1.4.1.dist-info torch_scatter tensorboard_data_server-0.7.2.dist-info scipy-1.12.0.dist-info torchdiffeq psutil fsspec-2023.4.0.dist-info keras-3.1.1.dist-info fonttools-4.49.0.dist-info websocket_client-1.3.3.dist-info scipy tensorflow_io_gcs_filesystem-0.36.0.dist-info yarl ml_dtypes astunparse functorch MarkupSafe-2.1.3.dist-info gitdb idna-3.6.dist-info jsonschema-4.21.1.dist-info matplotlib-3.8.3.dist-info git aiosignal torch_sparse dateutil wandb typing_extensions.py click-8.1.7.dist-info wrapt-1.16.0.dist-info dulwich python_box-6.1.0.dist-info Warning accessing /Applications/Visual\ Studio\ Code.app/Contents/Resources/app/bin gives errors: [Errno 2] No such file or directory: '/Applications/Visual\\ Studio\\ Code.app/Contents/Resources/app/bin' /Users/wthacher/Library/Python/3.8/bin: pyftsubset pip3.8 jupyter-run pyjson5 jupyter-labextension pybabel jlpm ttx pip3 ipython jupyter-notebook isympy send2trash torchrun fonttools jupyter-labhub jupyter-server convert-onnx-to-caffe2 jupyter-dejavu f2py ipython3 pip f2py3.8 jupyter-nbconvert jupyter-lab jsonschema wsdump tqdm jupyter-troubleshoot pygmentize jupyter-migrate jupyter-console convert-caffe2-to-onnx jupyter-events normalizer jupyter-trust jsonpointer f2py3 jupyter-qtconsole jupyter-kernelspec jupyter-kernel jupyter qtpy pyftmerge jupyter-execute /Applications/MATLAB_R2021b.app/bin: .matlab7rc.sh lcdata_utf8.xml mexext crash_analyzer.cfg util deactivate_matlab.sh m3iregistry icutzdata lcdata.xsd mw_mpiexec matlab-glselector.sh mw_smpd matlab maci64 activate_matlab.sh ldd worker lcdata.xml matlab_jenv mex controllingProduct.json /Applications/Julia-1.7.app/Contents/Resources/julia/bin: julia /Applications/VisIt.app/Contents/Resources/bin/: run_doxygen xmltest xml2java visit_plugin mcurvit xml2avt frontendlauncher regen-ajp frontendlauncher.py visitconvert mpeg2encode curv3dprep xml2window visit makemili_driver visitprotocol xml2plugin xml2cmake xmledit text2polys mkgrdbl visit_composite Doxyfile visit_transition surfcomp visitlog.py xml2python time_annotation xml2info xml2atts /opt/homebrew/bin: ndmetis cpan ppmtouil lzmainfo xwdtopnm ppmtorgb3 pamtohdiff pbmtoppa unzstd ccmake ppmtoyuvsplit msgconv pbmtonokia dot2gxl leaftoppm event_rpcgen.py pnminvert pkg-config pbmpage h5perf pnmrotate bdftogd hwloc-compress-dir svn gif2rgb pgmslice ppmshadow anytopnm djxl asciitopgm ppmtoppm pgmkernel tifftopnm msggrep plookup pbmtoescp2 h5fuse.sh ppmcie gdk-pixbuf-pixdata ddbugtopbm pgmhist aarch64-apple-darwin21-gcc-ar-13 rawtoppm gmake webpng pnmcut gcc-13 pnmhistmap palmtopnm pamseq pcre2grep autopoint mpif90 fitstopnm gifclrmp pampick hwloc-bind pngtopam pzstd pambrighten ppmmix wget gsl-histogram tificc aarch64-apple-darwin21-gcc-ranlib-13 pnmtofits svnserve pamrecolor pgmmake db_log_verify pamaltsat pbmtog3 instmodsh cluster aarch64-apple-darwin21-gcc-nm-13 db_upgrade 2to3-3.12 pbmtomrf pamtilt perlivp pbmtodjvurle gv2gml h5copy c_rehash xzdec pod2usage tiffsplit pambayer gxl2dot ppmforge corelist pnmtosgi ppmtojpeg wheel3 gts2oogl mtvtoppm pamstretch qoitopam ssimulacra2 h5pcc pydoc3.12 db_hotbackup tred pamfunc pandoc pcdovtoppm linkicc msgcomm pnmnoraw h5perf_serial fc-list pnmpaste pamsharpness unflatten ppmtoilbm mpirun gtscompare pnminterp-gen libnetcfg lispmtopgm gtester ppmrainbow pbmtopgm gcc-nm-13 pnmtops pbmtocis autoscan gd2togif 411toppm gfortran mm2gv 2to3 pbmtoxbm ppmfade pamperspective python3 pnmtoddif pamfind ompi_info pip3.12 png-fix-itxt db_replicate jxlinfo dot pamslice pamsharpmap ppmtotga pbmtowbmp pgmenhance jbigtopnm encguess pgmtosbig prte cmake zstdless ppmflash tiffdump pamaddnoise h5unjam pbmtogem ppmspread ppmddumpfont gcc-ar-13 fc-pattern ilbmtoppm pbmtox10bm pnmfile db_printlog g++-13 gdk-pixbuf-query-loaders unxz ppmdmkfont pbmtolps db_archive hwloc-distrib h5delete pammasksharpen jiv freetype-config pip3 exrmultipart pgmnorm gr2fonttest gcov-13 sunicontopnm exr_to_pq exrmultiview aarch64-apple-darwin21-g++-13 pcre2test gdbus-codegen fc-validate pamtopdbimg cjpeg pamcat autom4te visualinfo ppmchange h5stat cmpfillin escp2topbm jpegtran gvpack h5ls palloc exrmaketiled pattrs lstopo pbmminkowski libpng16-config pod2text pamshuffle yuvtoppm xzegrep gsettings gv2gxl jxl_from_tree pngfix zeisstopnm butteraugli_main glib-compile-schemas webpmux pamscale pgmtopgm fc-query brotli pnmtopng ptardiff cameratopam pnmtojpeg yuvsplittoppm rasttopnm exr2aces ppmtopjxl pbmtoicon pbmreduce ppmdist pamsistoaglyph twopi pbmtozinc unlzma pgmtexture pbmto4425 ppmdim pbmpscale ppmtopuzz db_stat ybmtopbm pbmtomgr pbmtopi3 hdifftopam pamexec ppmtowinicon diffimg json_pp pktopbm lz4cat pgmtolispm gdk-pixbuf-csource fiascotopnm pamdepth perl svnrdump hwloc-calc pnmarith pjtoppm perlbug xzfgrep sirtopnm gtstemplate webpinfo db_load piconv gdtopng hwloc-info h5jam libpng-config exrinfo pnmscalefixed prun gdbm_dump pbmtomda graphml2gv ptargrep pamtompfont h2ph gobject-query brushtopbm pnmsmooth python3.12-config pnmenlarge brew pnmtopclxl fstopgm pgmdeshadow vmaf ppmtopi1 ppmdcfont bmptopnm pnminterp g3topbm prove pamgetcolor podchecker pbmtoascii pnmcrop pnmtopalm pamsplit texture_to_cube pbmlife pamundice xpmtoppm lz4 rletopnm pngtogd2 msgen sgitopnm pbmtoepsi sldtoppm patchwork pnmflip eyuvtoppm shasum autoupdate pnmtosir sccmap pambackground manweb svnfsfs pdbimgtopam jpeg2ktopam pnmtotiff pamshadedrelief mdatopbm ppmtoeyuv ppmntsc djpeg picttoppm giftopnm pnmindex pnmshear ptar pnmtile annotate msgmerge pamtopnm happrox pamunlookup pamlevels neotoppm wbmptopbm pbmtobbnbg h5mkgrp gvmap gi-decompile-typelib pamrgbatopng rlatopam pgmramp m2gmetis pnmcomp aarch64-apple-darwin21-gfortran-13 pamtooctaveimg gio-querymodules mpif77 zstdgrep pamtohtmltbl pcdindex ppmtoneo fribidi ppmtosixel pnmtorast h5format_convert gts2dxf pnmhisteq gemtopbm aarch64-apple-darwin21-gcc-13 idle3 mpmetis gdcmpgif envsubst xz ppmdither inkscape pi1toppm pampaintspill spctoppm cairo-trace pbmtomatrixorbital gdparttopng mgrtopbm h5repack ximtoppm glib-compile-resources pamtogif ppmtoacad gsl-randist msginit pl2pm benchmark_xl idle3.12 pamdice svnlook macptopbm pamtosvg pbmtogo neato ppmtolj ppmtoxpm img2webp giftext hwloc-ls pamstretch-gen pbmmask gsl-config ppmglobe generate_lut_template sputoppm mpicc cmuwmtopbm pngtopnm pamstereogram python3-config pango-segmentation tiffset local_tone_map pamflip pfmtopam xyb_range avstopam tgatoppm giftogd2 pbmtextps lto-dump-13 wheel3.12 pevent pango-view aomdec prte_info ppmpat pbmnoise pamtoxvmini hpcdtoppm h5watch db_verify pi3topbm pbmtoepson pnmnorm ppmtobmp pamrestack pnmtoxwd perlthanks pamcrater delaunay osage pango-list hb-ot-shape-closure qrttoppm exrmanifest gts2stl ppmtoarbtxt ppm3d hwloc-patch giffix pamcomp lzless cistopbm pamedge xsubpp gvgen streamzip svnmucc pbmtoatk ppmtoterm tiffinfo h5pfc ppmdraw perldoc pnmconvol pgmoil gresource bioradtopgm psidtopgm avifenc display_to_hlg pamtopfm pamtojpeg2k pamwipeout pcc gcc-ranlib-13 pamsummcol jpegtopnm glibtool hipstopgm ppmtopict svnadmin graphchk gettext pnmcat gpmetis pgmminkowski gvpr gtester-report nop pc1toppm pgmabel atktopbm ppmtogif pbmclean glibtoolize ppmrelief gcov-dump-13 gettext.sh ctest gfortran-13 c++-13 avifdec db_tuner pamfixtrunc svndumpfilter xzless zstd exrmakepreview msgcmp opal_wrapper lzcmp pnmstitch circo pcre2-config gd2topng ppmtoicr xzcat pamhue mrftopbm gxl2gv svnsync pamthreshold autoreconf pamstack pbmtocmuwm transicc exrstdattr wrjpgcom mpicxx pnmtofiasco ppmquant autoconf prterun lz4c pbmtoplot pbmmake pnmtotiffcmyk pamtoavs pbmtosunicon gifbuild pamsumm pnmpsnr h5diff ppmtopgm msgcat acyclic aomenc pbmtopk gml2gv zstdcat pgmbentley autoheader pq_to_hlg gtscheck pmixcc pamendian imginfo rawtopgm gif2webp h5clear pquery psicc djxl_fuzzer_corpus recode-sr-latin glib-gettextize xzcmp pamtofits gouldtoppm giftool lzcat pnmtorle svnversion pamoil pbmtoibm23xx jpgicc sfdp gc pgmmedian hwloc-diff gdk-pixbuf-thumbnailer h2xs pammixinterlace pbmtopsg3 lstopo-no-graphics fc-cache unlz4 ppmtopj pampop9 db_checkpoint pnmremap hwloc-ps gdbus pcxtoppm zstdmt fc-cat pod2man ppmtospu enc2xs ppmcolors ppmtoleaf lzdiff h5redeploy pgmtost4 dijkstra perl5.38.2 pnmtopnm pgmedge pamvalidate pps gdbmtool sbigtopgm msgexec gvmap.sh pamtotiff gcov-tool-13 glib-genmarshal ngettext ppmhist dot_builtins prune winicontoppm h5debug pgmmorphconv pamlookup dwebp xbmtopbm ppmtoyuv ppmtomap pgmcrater oshrun ifnames pnmalias pnmcolormap pammixmulti pgmtopbm rsvg-convert pbmto10x pamtoqoi tjbench ppmtopcx gd2copypal ppmrough ppmmake lzmadec ph5diff pnmmercator stl2gts rgb3toppm fc-match pnmgamma infotopam svnbench h5repart lzgrep gts-config msgunfmt pnmtoplainpnm cpp-13 pamdeinterlace pamgradient h5import pnmsplit db_deadlock tiffcp fdp gi-compile-repository lzmore xvminitoppm pamfile mpiexec pnmnlfilt pamtouil pamtodjvurle pgmtofs pngtogd pnmmargin bcomps pamchannel pnmquantall pbmtomacp pbmtext openssl h5tools_test_utils hb-info pnmpad ppmwheel exrenvmap aarch64-apple-darwin21-c++-13 ppmlabel thinkjettopbm pnmquant pbmupc splain msgfilter winicontopam pamtosrf pamditherbw python3.12 pbmtoptx pgmnoise pbmtolj lzfgrep pamarith exrheader ccomps fc-conflist pctrl glib-mkenums xzmore pod2html hb-view pnmdepth pammosaicknit idn2 ppmquantall cwebp pmix_info render_hlg transform ppmshift yuy2topam prted mpic++ pamenlarge tone_map xzgrep mpifort pamgauss pydoc3 pamtotga hb-shape pbmtoln03 pstopnm ppmtompeg edgepaint svgtopam lzma db_recover gdbm_load pamcut jasper decode_and_encode gemtopnm pbmtoybm spottopgm pamfix st4topgm db_dump srftopam pnmmontage glewinfo rdjpgcom sdl2-config ppmbrighten icontopbm lzegrep cpack pamtris msgfmt ppmtoapplevol pgmtoppm db_convert xzdiff msgattrib gvcolor imgcmp suitesparse_mongoose gi-inspect-typelib zipdetails pamtopam pamrubber pamtowinicon ppmtoascii xgettext vwebp pamhomography hb-subset cjxl ppmtv ppmtomitsu imgtoppm gio hwloc-annotate pamtopng ppmnorm ppmcolormask pamtable pnmscale h5dump .keepme fc-scan gettextize ssimulacra_main pterm msguniq bmptoppm pnmtojbig /opt/homebrew/sbin: .keepme ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(/Users/wthacher/Desktop/LBL/petsc/config/BuildSystem/config/framework.py:1084) Set alternative directory external packages are built in serialEvaluation: initial cxxDialectRanges ('c++11', 'c++20') serialEvaluation: new cxxDialectRanges ('c++11', 'c++20') child config.utilities.macosFirewall took 0.000063 seconds ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(/Users/wthacher/Desktop/LBL/petsc/config/BuildSystem/config/utilities/debuggers.py:20) Find a default debugger and determine its arguments Checking for program /Users/wthacher/.juliaup/bin/lldb...not found Checking for program /Users/wthacher/Library/Python/3.9/bin/lldb...not found Checking for program /Users/wthacher/Library/Python/3.9/lib/python/site-packages/lldb...not found Checking for program /Applications/Visual Studio Code.app/Contents/Resources/app/bin/lldb...not found Checking for program /Users/wthacher/Library/Python/3.8/bin/lldb...not found Checking for program /Applications/MATLAB_R2021b.app/bin/lldb...not found Checking for program /Applications/Julia-1.7.app/Contents/Resources/julia/bin/lldb...not found Checking for program /Applications/VisIt.app/Contents/Resources/bin/lldb...not found Checking for program /opt/homebrew/bin/lldb...not found Checking for program /opt/homebrew/sbin/lldb...not found Checking for program /usr/local/bin/lldb...not found Checking for program /System/Cryptexes/App/usr/bin/lldb...not found Checking for program /usr/bin/lldb...found Defined make macro "LLDB" to "/usr/bin/lldb" Defined "USE_DEBUGGER" to ""lldb"" Checking for program /Users/wthacher/.juliaup/bin/dsymutil...not found Checking for program /Users/wthacher/Library/Python/3.9/bin/dsymutil...not found Checking for program /Users/wthacher/Library/Python/3.9/lib/python/site-packages/dsymutil...not found Checking for program /Applications/Visual Studio Code.app/Contents/Resources/app/bin/dsymutil...not found Checking for program /Users/wthacher/Library/Python/3.8/bin/dsymutil...not found Checking for program /Applications/MATLAB_R2021b.app/bin/dsymutil...not found Checking for program /Applications/Julia-1.7.app/Contents/Resources/julia/bin/dsymutil...not found Checking for program /Applications/VisIt.app/Contents/Resources/bin/dsymutil...not found Checking for program /opt/homebrew/bin/dsymutil...not found Checking for program /opt/homebrew/sbin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /System/Cryptexes/App/usr/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...found Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Defined "DO_NOT_SWAP_CHILD_FOR_DEBUGGER" to "1" child config.utilities.debuggers took 0.001429 seconds ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(/Users/wthacher/Desktop/LBL/petsc/config/PETSc/options/petscdir.py:22) Checks PETSC_DIR and sets if not set PETSC_VERSION_RELEASE of 1 indicates the code is from a release branch or a branch created from a release branch. Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 21 #define PETSC_VERSION_SUBMINOR 1 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir took 0.001068 seconds ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(/Users/wthacher/Desktop/LBL/petsc/config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath took 0.000089 seconds ============================================================================================= TESTING: configureGit from config.sourceControl(/Users/wthacher/Desktop/LBL/petsc/config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /Users/wthacher/.juliaup/bin/git...not found Checking for program /Users/wthacher/Library/Python/3.9/bin/git...not found Checking for program /Users/wthacher/Library/Python/3.9/lib/python/site-packages/git...not found Checking for program /Applications/Visual Studio Code.app/Contents/Resources/app/bin/git...not found Checking for program /Users/wthacher/Library/Python/3.8/bin/git...not found Checking for program /Applications/MATLAB_R2021b.app/bin/git...not found Checking for program /Applications/Julia-1.7.app/Contents/Resources/julia/bin/git...not found Checking for program /Applications/VisIt.app/Contents/Resources/bin/git...not found Checking for program /opt/homebrew/bin/git...not found Checking for program /opt/homebrew/sbin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /System/Cryptexes/App/usr/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.39.3 (Apple Git-146) ============================================================================================= TESTING: configureMercurial from config.sourceControl(/Users/wthacher/Desktop/LBL/petsc/config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /Users/wthacher/.juliaup/bin/hg...not found Checking for program /Users/wthacher/Library/Python/3.9/bin/hg...not found Checking for program /Users/wthacher/Library/Python/3.9/lib/python/site-packages/hg...not found Checking for program /Applications/Visual Studio Code.app/Contents/Resources/app/bin/hg...not found Checking for program /Users/wthacher/Library/Python/3.8/bin/hg...not found Checking for program /Applications/MATLAB_R2021b.app/bin/hg...not found Checking for program /Applications/Julia-1.7.app/Contents/Resources/julia/bin/hg...not found Checking for program /Applications/VisIt.app/Contents/Resources/bin/hg...not found Checking for program /opt/homebrew/bin/hg...not found Checking for program /opt/homebrew/sbin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /System/Cryptexes/App/usr/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /sbin/hg...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin/hg...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin/hg...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin/hg...not found Checking for program /Library/Apple/usr/bin/hg...not found Checking for program /Library/TeX/texbin/hg...not found Checking for program /Users/wthacher/.juliaup/bin/hg...not found Checking for program /Users/wthacher/Library/Python/3.9/bin/hg...not found Checking for program /Users/wthacher/Library/Python/3.9/lib/python/site-packages/hg...not found Checking for program /Applications/Visual Studio Code.app/Contents/Resources/app/bin/hg...not found Checking for program /Users/wthacher/Library/Python/3.8/bin/hg...not found Checking for program /Applications/MATLAB_R2021b.app/bin/hg...not found Checking for program /Applications/Julia-1.7.app/Contents/Resources/julia/bin/hg...not found Checking for program /Applications/VisIt.app/Contents/Resources/bin/hg...not found Checking for program /opt/homebrew/bin/hg...not found Checking for program /opt/homebrew/sbin/hg...not found Checking for program /Users/wthacher/Desktop/LBL/petsc/lib/petsc/bin/win32fe/hg...not found child config.sourceControl took 0.012912 seconds ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(/Users/wthacher/Desktop/LBL/petsc/config/PETSc/options/petscclone.py:20) Determine if PETSc was obtained via git or a tarball lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.21.1-29-g6b3135e3cbe Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 6b3135e3cbe5b8af31c051d7bc4b181affcff0ee Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2024-05-06 13:57:38 +0000 Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD'] stdout: release Executing: ['git', 'status', '--short', '-uno'] Defined "VERSION_GIT" to ""v3.21.1-29-g6b3135e3cbe"" Defined "VERSION_DATE_GIT" to ""2024-05-06 13:57:38 +0000"" Defined "VERSION_BRANCH_GIT" to ""release"" child PETSc.options.petscclone took 0.086280 seconds ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(/Users/wthacher/Desktop/LBL/petsc/config/PETSc/options/arch.py:29) Forms the arch as GNU's configure would form it ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(/Users/wthacher/Desktop/LBL/petsc/config/PETSc/options/arch.py:42) Checks if PETSC_ARCH is set and sets it if not set configure hash file: arch-darwin-debug/lib/petsc/conf/configure-hash does not match, need to run configure Setting hashfile: arch-darwin-debug/lib/petsc/conf/configure-hash Deleting configure hash file: arch-darwin-debug/lib/petsc/conf/configure-hash Deleted configure hash file: arch-darwin-debug/lib/petsc/conf/configure-hash child PETSc.options.arch took 0.025088 seconds ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(/Users/wthacher/Desktop/LBL/petsc/config/PETSc/options/installDir.py:31) Set installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/Users/wthacher/Desktop/LBL/petsc/arch-darwin-debug" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(/Users/wthacher/Desktop/LBL/petsc/config/PETSc/options/installDir.py:76) Save the configure options in a script in PETSC_ARCH/lib/petsc/conf so the same configure may be easily re-run ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(/Users/wthacher/Desktop/LBL/petsc/config/PETSc/options/installDir.py:68) Remove all the files from configuration directory for this PETSC_ARCH, from --with-clean option ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(/Users/wthacher/Desktop/LBL/petsc/config/PETSc/options/installDir.py:52) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /Users/wthacher/Desktop/LBL/petsc/arch-darwin-debug/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(/Users/wthacher/Desktop/LBL/petsc/config/PETSc/options/installDir.py:90) If --with-clean was requested but restoring the reconfigure file was requested then restore it child PETSc.options.installDir took 0.000398 seconds ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/Users/wthacher/Desktop/LBL/petsc/config/PETSc/options/externalpackagesdir.py:15) Set location where external packages will be downloaded to ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/Users/wthacher/Desktop/LBL/petsc/config/PETSc/options/externalpackagesdir.py:23) Remove all downloaded external packages, from --with-clean child PETSc.options.externalpackagesdir took 0.000106 seconds ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(/Users/wthacher/Desktop/LBL/petsc/config/PETSc/options/languages.py:28) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages took 0.000199 seconds ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(/Users/wthacher/Desktop/LBL/petsc/config/BuildSystem/config/setCompilers.py:2761) Remove compilers from the shell environment so they do not interfere with testing ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(/Users/wthacher/Desktop/LBL/petsc/config/BuildSystem/config/setCompilers.py:2778) Set configure compilers from the environment, from -with-environment-variables ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(/Users/wthacher/Desktop/LBL/petsc/config/BuildSystem/config/setCompilers.py:2731) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(/Users/wthacher/Desktop/LBL/petsc/config/BuildSystem/config/setCompilers.py:2752) Open MPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(/Users/wthacher/Desktop/LBL/petsc/config/BuildSystem/config/setCompilers.py:739) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to -Wl,-ld_classic Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to -Wl,-ld_classic Initialized HIPFLAGS to Initialized HIPFLAGS to Initialized LDFLAGS to -Wl,-ld_classic Initialized SYCLFLAGS to Initialized SYCLFLAGS to Initialized SYCLC_LINKER_FLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to -Wl,-ld_classic Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to -Wl,-ld_classic Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to Initialized SYCLPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(/Users/wthacher/Desktop/LBL/petsc/config/BuildSystem/config/setCompilers.py:1448) Checking for program /Users/wthacher/.juliaup/bin/mpincc...not found Checking for program /Users/wthacher/Library/Python/3.9/bin/mpincc...not found Checking for program /Users/wthacher/Library/Python/3.9/lib/python/site-packages/mpincc...not found Checking for program /Applications/Visual Studio Code.app/Contents/Resources/app/bin/mpincc...not found Checking for program /Users/wthacher/Library/Python/3.8/bin/mpincc...not found Checking for program /Applications/MATLAB_R2021b.app/bin/mpincc...not found Checking for program /Applications/Julia-1.7.app/Contents/Resources/julia/bin/mpincc...not found Checking for program /Applications/VisIt.app/Contents/Resources/bin/mpincc...not found Checking for program /opt/homebrew/bin/mpincc...not found Checking for program /opt/homebrew/sbin/mpincc...not found Checking for program /usr/local/bin/mpincc...not found Checking for program /System/Cryptexes/App/usr/bin/mpincc...not found Checking for program /usr/bin/mpincc...not found Checking for program /bin/mpincc...not found Checking for program /usr/sbin/mpincc...not found Checking for program /sbin/mpincc...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin/mpincc...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin/mpincc...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin/mpincc...not found Checking for program /Library/Apple/usr/bin/mpincc...not found Checking for program /Library/TeX/texbin/mpincc...not found Checking for program /Users/wthacher/.juliaup/bin/mpincc...not found Checking for program /Users/wthacher/Library/Python/3.9/bin/mpincc...not found Checking for program /Users/wthacher/Library/Python/3.9/lib/python/site-packages/mpincc...not found Checking for program /Applications/Visual Studio Code.app/Contents/Resources/app/bin/mpincc...not found Checking for program /Users/wthacher/Library/Python/3.8/bin/mpincc...not found Checking for program /Applications/MATLAB_R2021b.app/bin/mpincc...not found Checking for program /Applications/Julia-1.7.app/Contents/Resources/julia/bin/mpincc...not found Checking for program /Applications/VisIt.app/Contents/Resources/bin/mpincc...not found Checking for program /opt/homebrew/bin/mpincc...not found Checking for program /opt/homebrew/sbin/mpincc...not found Checking for program /Users/wthacher/Desktop/LBL/petsc/lib/petsc/bin/win32fe/mpincc...not found Checking for program /Users/wthacher/.juliaup/bin/mpicc...not found Checking for program /Users/wthacher/Library/Python/3.9/bin/mpicc...not found Checking for program /Users/wthacher/Library/Python/3.9/lib/python/site-packages/mpicc...not found Checking for program /Applications/Visual Studio Code.app/Contents/Resources/app/bin/mpicc...not found Checking for program /Users/wthacher/Library/Python/3.8/bin/mpicc...not found Checking for program /Applications/MATLAB_R2021b.app/bin/mpicc...not found Checking for program /Applications/Julia-1.7.app/Contents/Resources/julia/bin/mpicc...not found Checking for program /Applications/VisIt.app/Contents/Resources/bin/mpicc...not found Checking for program /opt/homebrew/bin/mpicc...found Defined make macro "CC" to "mpicc" Executing: mpicc -c -o /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.o -I/var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(void) { return 0; } Executing: mpicc -c -o /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.o -I/var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(void) { return 0; } Executing: mpicc -o /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest -Wl,-ld_classic /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.o Executing: mpicc -c -o /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.o -I/var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(void) { return 0; } Executing: mpicc -o /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest -Wl,-ld_classic /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm stdout: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) ======== Checking running linked program Executing: mpicc -c -o /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.o -I/var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(void) { return 0; } Executing: mpicc -o /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest -Wl,-ld_classic /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.o Testing executable /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest to see if it can be run Executing: /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest Executing: mpicc --version stdout: Apple clang version 15.0.0 (clang-1500.3.9.4) Target: arm64-apple-darwin23.4.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin Executing: uname -p stdout: arm Detected ARM processor Executing: mpicc -v | head -n 20 stdout: Apple clang version 15.0.0 (clang-1500.3.9.4) Target: arm64-apple-darwin23.4.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(/Users/wthacher/Desktop/LBL/petsc/config/BuildSystem/config/setCompilers.py:1495) Locate a functional C preprocessor Checking for program /Users/wthacher/.juliaup/bin/mpicc...not found Checking for program /Users/wthacher/Library/Python/3.9/bin/mpicc...not found Checking for program /Users/wthacher/Library/Python/3.9/lib/python/site-packages/mpicc...not found Checking for program /Applications/Visual Studio Code.app/Contents/Resources/app/bin/mpicc...not found Checking for program /Users/wthacher/Library/Python/3.8/bin/mpicc...not found Checking for program /Applications/MATLAB_R2021b.app/bin/mpicc...not found Checking for program /Applications/Julia-1.7.app/Contents/Resources/julia/bin/mpicc...not found Checking for program /Applications/VisIt.app/Contents/Resources/bin/mpicc...not found Checking for program /opt/homebrew/bin/mpicc...found Defined make macro "CPP" to "mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.c Preprocess output before filtering: Preprocess output after filtering: ============================================================================================= TESTING: checkCxxCompiler from config.setCompilers(/Users/wthacher/Desktop/LBL/petsc/config/BuildSystem/config/setCompilers.py:1777) Locate a functional Cxx compiler Checking for program /Users/wthacher/.juliaup/bin/mpinc++...not found Checking for program /Users/wthacher/Library/Python/3.9/bin/mpinc++...not found Checking for program /Users/wthacher/Library/Python/3.9/lib/python/site-packages/mpinc++...not found Checking for program /Applications/Visual Studio Code.app/Contents/Resources/app/bin/mpinc++...not found Checking for program /Users/wthacher/Library/Python/3.8/bin/mpinc++...not found Checking for program /Applications/MATLAB_R2021b.app/bin/mpinc++...not found Checking for program /Applications/Julia-1.7.app/Contents/Resources/julia/bin/mpinc++...not found Checking for program /Applications/VisIt.app/Contents/Resources/bin/mpinc++...not found Checking for program /opt/homebrew/bin/mpinc++...not found Checking for program /opt/homebrew/sbin/mpinc++...not found Checking for program /usr/local/bin/mpinc++...not found Checking for program /System/Cryptexes/App/usr/bin/mpinc++...not found Checking for program /usr/bin/mpinc++...not found Checking for program /bin/mpinc++...not found Checking for program /usr/sbin/mpinc++...not found Checking for program /sbin/mpinc++...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin/mpinc++...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin/mpinc++...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin/mpinc++...not found Checking for program /Library/Apple/usr/bin/mpinc++...not found Checking for program /Library/TeX/texbin/mpinc++...not found Checking for program /Users/wthacher/.juliaup/bin/mpinc++...not found Checking for program /Users/wthacher/Library/Python/3.9/bin/mpinc++...not found Checking for program /Users/wthacher/Library/Python/3.9/lib/python/site-packages/mpinc++...not found Checking for program /Applications/Visual Studio Code.app/Contents/Resources/app/bin/mpinc++...not found Checking for program /Users/wthacher/Library/Python/3.8/bin/mpinc++...not found Checking for program /Applications/MATLAB_R2021b.app/bin/mpinc++...not found Checking for program /Applications/Julia-1.7.app/Contents/Resources/julia/bin/mpinc++...not found Checking for program /Applications/VisIt.app/Contents/Resources/bin/mpinc++...not found Checking for program /opt/homebrew/bin/mpinc++...not found Checking for program /opt/homebrew/sbin/mpinc++...not found Checking for program /Users/wthacher/Desktop/LBL/petsc/lib/petsc/bin/win32fe/mpinc++...not found Checking for program /Users/wthacher/.juliaup/bin/mpinc++...not found Checking for program /Users/wthacher/Library/Python/3.9/bin/mpinc++...not found Checking for program /Users/wthacher/Library/Python/3.9/lib/python/site-packages/mpinc++...not found Checking for program /Applications/Visual Studio Code.app/Contents/Resources/app/bin/mpinc++...not found Checking for program /Users/wthacher/Library/Python/3.8/bin/mpinc++...not found Checking for program /Applications/MATLAB_R2021b.app/bin/mpinc++...not found Checking for program /Applications/Julia-1.7.app/Contents/Resources/julia/bin/mpinc++...not found Checking for program /Applications/VisIt.app/Contents/Resources/bin/mpinc++...not found Checking for program /opt/homebrew/bin/mpinc++...not found Checking for program /opt/homebrew/sbin/mpinc++...not found Checking for program /usr/local/bin/mpinc++...not found Checking for program /System/Cryptexes/App/usr/bin/mpinc++...not found Checking for program /usr/bin/mpinc++...not found Checking for program /bin/mpinc++...not found Checking for program /usr/sbin/mpinc++...not found Checking for program /sbin/mpinc++...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin/mpinc++...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin/mpinc++...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin/mpinc++...not found Checking for program /Library/Apple/usr/bin/mpinc++...not found Checking for program /Library/TeX/texbin/mpinc++...not found Checking for program /Users/wthacher/.juliaup/bin/mpinc++...not found Checking for program /Users/wthacher/Library/Python/3.9/bin/mpinc++...not found Checking for program /Users/wthacher/Library/Python/3.9/lib/python/site-packages/mpinc++...not found Checking for program /Applications/Visual Studio Code.app/Contents/Resources/app/bin/mpinc++...not found Checking for program /Users/wthacher/Library/Python/3.8/bin/mpinc++...not found Checking for program /Applications/MATLAB_R2021b.app/bin/mpinc++...not found Checking for program /Applications/Julia-1.7.app/Contents/Resources/julia/bin/mpinc++...not found Checking for program /Applications/VisIt.app/Contents/Resources/bin/mpinc++...not found Checking for program /opt/homebrew/bin/mpinc++...not found Checking for program /opt/homebrew/sbin/mpinc++...not found Checking for program /Users/wthacher/Desktop/LBL/petsc/lib/petsc/bin/win32fe/mpinc++...not found Checking for program /Users/wthacher/.juliaup/bin/mpinc++...not found Checking for program /Users/wthacher/Library/Python/3.9/bin/mpinc++...not found Checking for program /Users/wthacher/Library/Python/3.9/lib/python/site-packages/mpinc++...not found Checking for program /Applications/Visual Studio Code.app/Contents/Resources/app/bin/mpinc++...not found Checking for program /Users/wthacher/Library/Python/3.8/bin/mpinc++...not found Checking for program /Applications/MATLAB_R2021b.app/bin/mpinc++...not found Checking for program /Applications/Julia-1.7.app/Contents/Resources/julia/bin/mpinc++...not found Checking for program /Applications/VisIt.app/Contents/Resources/bin/mpinc++...not found Checking for program /opt/homebrew/bin/mpinc++...not found Checking for program /opt/homebrew/sbin/mpinc++...not found Checking for program /usr/local/bin/mpinc++...not found Checking for program /System/Cryptexes/App/usr/bin/mpinc++...not found Checking for program /usr/bin/mpinc++...not found Checking for program /bin/mpinc++...not found Checking for program /usr/sbin/mpinc++...not found Checking for program /sbin/mpinc++...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin/mpinc++...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin/mpinc++...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin/mpinc++...not found Checking for program /Library/Apple/usr/bin/mpinc++...not found Checking for program /Library/TeX/texbin/mpinc++...not found Checking for program /Users/wthacher/.juliaup/bin/mpinc++...not found Checking for program /Users/wthacher/Library/Python/3.9/bin/mpinc++...not found Checking for program /Users/wthacher/Library/Python/3.9/lib/python/site-packages/mpinc++...not found Checking for program /Applications/Visual Studio Code.app/Contents/Resources/app/bin/mpinc++...not found Checking for program /Users/wthacher/Library/Python/3.8/bin/mpinc++...not found Checking for program /Applications/MATLAB_R2021b.app/bin/mpinc++...not found Checking for program /Applications/Julia-1.7.app/Contents/Resources/julia/bin/mpinc++...not found Checking for program /Applications/VisIt.app/Contents/Resources/bin/mpinc++...not found Checking for program /opt/homebrew/bin/mpinc++...not found Checking for program /opt/homebrew/sbin/mpinc++...not found Checking for program /Users/wthacher/Desktop/LBL/petsc/lib/petsc/bin/win32fe/mpinc++...not found Checking for program /Users/wthacher/.juliaup/bin/mpicxx...not found Checking for program /Users/wthacher/Library/Python/3.9/bin/mpicxx...not found Checking for program /Users/wthacher/Library/Python/3.9/lib/python/site-packages/mpicxx...not found Checking for program /Applications/Visual Studio Code.app/Contents/Resources/app/bin/mpicxx...not found Checking for program /Users/wthacher/Library/Python/3.8/bin/mpicxx...not found Checking for program /Applications/MATLAB_R2021b.app/bin/mpicxx...not found Checking for program /Applications/Julia-1.7.app/Contents/Resources/julia/bin/mpicxx...not found Checking for program /Applications/VisIt.app/Contents/Resources/bin/mpicxx...not found Checking for program /opt/homebrew/bin/mpicxx...found Defined make macro "CXX" to "mpicxx" Executing: mpicxx -c -o /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.o -I/var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(void) { return 0; } Executing: mpicxx -c -o /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.o -I/var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(void) { return 0; } Executing: mpicxx -o /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest -Wl,-ld_classic /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.o Executing: mpicxx -c -o /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.o -I/var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(void) { return 0; } Executing: mpicxx -o /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest -Wl,-ld_classic /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm stdout: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) ======== Checking running linked program Executing: mpicxx -c -o /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.o -I/var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(void) { return 0; } Executing: mpicxx -o /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest -Wl,-ld_classic /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest.o Testing executable /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest to see if it can be run Executing: /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/bb/ybwz8b6d2dx444f8f00tg4th0000gp/T/petsc-5o74zxqp/config.setCompilers/conftest Executing: mpicxx --version stdout: Apple clang version 15.0.0 (clang-1500.3.9.4) Target: arm64-apple-darwin23.4.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin ============================================================================================= TESTING: checkDeviceHostCompiler from config.setCompilers(/Users/wthacher/Desktop/LBL/petsc/config/BuildSystem/config/setCompilers.py:765) Set the host compiler (HC) of the device compiler (DC) to the HC unless the DC already explicitly sets its HC. This may be needed if the default HC used by the DC is ancient and PETSc uses a different HC (e.g., through --with-cxx=...). Executing: mpicxx --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --amdgpu-arch-tool= Tool used for detecting AMD GPU arch in the system. --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|sarif-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Search $prefix$file for executables, libraries, and data files. If $prefix is a directory, search $prefix/$file -b Pass -b to the linker on AIX -cc1-args pass cc1 options to depscan afterwards -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. stdout: error: write on a pipe with no reader Executing: mpicxx --help stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --amdgpu-arch-tool= Tool used for detecting AMD GPU arch in the system. --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|sarif-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Search $prefix$file for executables, libraries, and data files. If $prefix is a directory, search $prefix/$file -b Pass -b to the linker on AIX -cc1-args pass cc1 options to depscan afterwards -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-ext= OpenCL only. Enable or disable OpenCL extensions/optional features. The argument is a comma-separated sequence of one or more extension names, each prefixed by '+' or '-'. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt OpenCL only. Specify that single precision floating-point divide and sqrt used in the program source are correctly rounded. -cl-kernel-arg-info OpenCL only. Generate kernel argument metadata. -cl-mad-enable OpenCL only. Allow use of less precise MAD computations in the generated binary. -cl-no-signed-zeros OpenCL only. Allow use of less precise no signed zeros computations in the generated binary. -cl-no-stdinc OpenCL only. Disables all standard includes containing non-native compiler types and functions. -cl-opt-disable OpenCL only. This option disables all optimizations. By default optimizations are enabled. -cl-single-precision-constant OpenCL only. Treat double precision floating-point constant as single precision constant. -cl-std= OpenCL language standard to compile for. -cl-strict-aliasing OpenCL only. This option is added for compatibility with OpenCL 1.0. -cl-uniform-work-group-size OpenCL only. Defines that the global work-size be a multiple of the work-group size specified to clEnqueueNDRangeKernel -cl-unsafe-math-optimizations OpenCL only. Allow unsafe floating-point optimizations. Also implies -cl-no-signed-zeros and -cl-mad-enable. --config= Specify configuration file --cuda-compile-host-device Compile CUDA code for both host and device (default). Has no effect on non-CUDA compilations. --cuda-device-only Compile CUDA code for device only --cuda-feature= Manually specify the CUDA feature to use --cuda-host-only Compile CUDA code for host only. Has no effect on non-CUDA compilations. --cuda-include-ptx= Include PTX for the following GPU architecture (e.g. sm_35) or 'all'. May be specified more than once. --cuda-noopt-device-debug Enable device-side debug info generation. Disables ptxas optimizations. --cuda-path-ignore-env Ignore environment variables to detect CUDA installation --cuda-path= CUDA installation path -cuid= An ID for compilation unit, which should be the same for the same compilation unit but different for different compilation units. It is used to externalize device-side static variables for single source offloading languages CUDA and HIP so that they can be accessed by the host code of the same compilation unit. -cxx-isystem Add directory to the C++ SYSTEM include search path -C Include comments in preprocessed output -c Only run preprocess, compile, and assemble steps -darwin-target-variant-triple Specify the darwin target variant triple -darwin-target-variant Generate code for an additional runtime variant of the deployment target -dD Print macro definitions in -E mode in addition to normal output -dependency-dot Filename to write DOT-formatted header dependencies to -dependency-file Filename (or -) to write dependency output to -dI Print include directives in -E mode in addition to normal output -dM Print macro definitions in -E mode instead of normal output -dsym-dir Directory to output dSYM's (if any) to -dump-depscan-tree= emit the CAS identifier for the tree instead of the full -cc1 -D = Define to (or 1 if omitted) -emit-ast Emit Clang AST files for source inputs -emit-interface-stubs Generate Interface Stub Files. -emit-llvm Use the LLVM representation for assembler and object files -emit-merged-ifs Generate Interface Stub Files, emit merged text not binary. --emit-static-lib Enable linker job to emit a static library. --end-no-unused-arguments Start emitting warnings for unused driver arguments --extract-api-ignores= Comma separated list of files containing a new line separated list of API symbols to ignore when extracting API information. -extract-api Extract API information -E Only run the preprocessor -faapcs-bitfield-load Follows the AAPCS standard that all volatile bit-field write generates at least one load. (ARM only). -faapcs-bitfield-width Follow the AAPCS standard requirement stating that volatile bit-field width is dictated by the field container type. (ARM only). -faddrsig Emit an address-significance table -falign-loops= N must be a power of two. Align loops to the boundary -faligned-allocation Enable C++17 aligned allocation functions -fallow-editor-placeholders Treat editor placeholders as valid source code -faltivec-src-compat= Source-level compatibility for Altivec vectors (for PowerPC targets). This includes results of vector comparison (scalar for 'xl', vector for 'gcc') as well as behavior when initializing with a scalar (splatting for 'xl', element zero only for 'gcc'). For 'mixed', the compatibility is as 'gcc' for 'vector bool/vector pixel' and as 'xl' for other types. Current default is 'mixed'. -fansi-escape-codes Use ANSI escape codes for diagnostics -fapinotes-cache-path= Does nothing; API notes are no longer cached separately from modules -fapinotes-modules Enable module-based external API notes support -fapinotes-swift-version= Specify the Swift version to use when filtering API notes -fapinotes Enable external API notes support -fapple-kext Use Apple's kernel extensions ABI -fapple-link-rtlib Force linking the clang builtins runtime library -fapple-pragma-pack Enable Apple gcc-compatible #pragma pack handling -fapplication-extension Restrict code to those available for App Extensions -fapprox-func Allow certain math function calls to be replaced with an approximately equivalent calculation -fasync-exceptions Enable EH Asynchronous exceptions -fbasic-block-sections= Place each function's basic blocks in unique sections (ELF Only) -fbinutils-version= Produced object files can use all ELF features supported by this binutils version and newer. If -fno-integrated-as is specified, the generated assembly will consider GNU as support. 'none' means that all ELF features can be used, regardless of binutils support. Defaults to 2.26. -fblocks Enable the 'blocks' language feature -fborland-extensions Accept non-standard constructs supported by the Borland compiler -fbranch-target-identification Emit branch target identification instructions for indirect branch destinations -fbuild-session-file= Use the last modification time of as the build session timestamp -fbuild-session-timestamp=