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On my Mac at configure time I get clang: error: linker command failed with exit code 1 (use -v to see invocation) Possible ERROR while running linker: exit code 1 when trying to link a test case against the lapack libraries. I cannot generate
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On my Mac at configure time I get
clang: error: linker command failed with exit code 1 (use -v to see invocation)
Possible ERROR while running linker: exit code 1
when trying to link a test case against the lapack libraries. I cannot generate an error message showing what error has occurred
> On Mar 30, 2024, at 2:59 PM, Satish Balay <balay@mcs.anl.gov> wrote:
>
> I'll just note - I can reproduce with:
>
> petsc@npro petsc.x % ./configure --download-mpich --download-mumps --download-scalapack && make && make check
>
> And then - the following work fine for me:
>
> petsc@npro petsc.x % ./configure --download-mpich --download-mumps --download-scalapack COPTFLAGS=-O0 FOPTFLAGS=-O0 LDFLAGS=-Wl,-ld_classic && make && make check
> <snip>
> CLINKER arch-darwin-c-debug/lib/libpetsc.3.021.0.dylib
> DSYMUTIL arch-darwin-c-debug/lib/libpetsc.3.021.0.dylib
> =========================================
> Now to check if the libraries are working do:
> make PETSC_DIR=/Users/petsc/petsc.x PETSC_ARCH=arch-darwin-c-debug check
> =========================================
> Running PETSc check examples to verify correct installation
> Using PETSC_DIR=/Users/petsc/petsc.x and PETSC_ARCH=arch-darwin-c-debug
> C/C++ example src/snes/tutorials/ex19 run successfully with 1 MPI process
> C/C++ example src/snes/tutorials/ex19 run successfully with 2 MPI processes
> C/C++ example src/snes/tutorials/ex19 run successfully with MUMPS
> Fortran example src/snes/tutorials/ex5f run successfully with 1 MPI process
> Completed PETSc check examples
> petsc@npro petsc.x %
>
> petsc@npro petsc.z % ./configure --download-openmpi=<a href="https://urldefense.us/v3/__https://download.open-mpi.org/release/open-mpi/v5.0/openmpi-5.0.3rc1.tar.bz2__;!!G_uCfscf7eWS!ZCdX8VX2WwwopcGzGQq5RpwHmqiuIiIb1r4zByAJVKyH9howYTVO-FFqVMGMbc8fUX6bC9Jsln49TEDpvn4TyIo$">https://urldefense.us/v3/__https://download.open-mpi.org/release/open-mpi/v5.0/openmpi-5.0.3rc1.tar.bz2__;!!G_uCfscf7eWS!ZCdX8VX2WwwopcGzGQq5RpwHmqiuIiIb1r4zByAJVKyH9howYTVO-FFqVMGMbc8fUX6bC9Jsln49TEDpvn4TyIo$</a> --download-mumps --download-scalapack && make && make check
> <snip>
> DSYMUTIL arch-darwin-c-debug/lib/libpetsc.3.021.0.dylib
> =========================================
> Now to check if the libraries are working do:
> make PETSC_DIR=/Users/petsc/petsc.z PETSC_ARCH=arch-darwin-c-debug check
> =========================================
> Running PETSc check examples to verify correct installation
> Using PETSC_DIR=/Users/petsc/petsc.z and PETSC_ARCH=arch-darwin-c-debug
> C/C++ example src/snes/tutorials/ex19 run successfully with 1 MPI process
> C/C++ example src/snes/tutorials/ex19 run successfully with 2 MPI processes
> C/C++ example src/snes/tutorials/ex19 run successfully with MUMPS
> Fortran example src/snes/tutorials/ex5f run successfully with 1 MPI process
> Completed PETSc check examples
> petsc@npro petsc.z %
>
> [however parmmg and pastix are failing to build with openmpi]
>
> And I thought this worked for me yesterday - but I see failures now.
>
> ./configure --download-bison --download-chaco --download-ctetgen --download-eigen --download-fftw --download-hdf5 --download-hpddm --download-hwloc --download-hwloc-configure-arguments=--disable-opencl --download-hypre --download-libpng --download-metis --download-mmg --download-mpich --download-mpich-configure-arguments=--disable-opencl --download-mumps --download-netcdf --download-openblas --download-openblas-make-options="'USE_THREAD=0 USE_LOCKING=1 USE_OPENMP=0'" --download-parmmg --download-pastix --download-pnetcdf --download-pragmatic --download-ptscotch --download-scalapack --download-slepc --download-suitesparse --download-superlu_dist --download-tetgen --download-triangle --with-c2html=0 --with-debugging=1 --with-fortran-bindings=0 --with-shared-libraries=1 --with-x=0 --with-zlib --COPTFLAGS=-O0 --FOPTFLAGS=-O0 --LDFLAGS=-Wl,-ld_classic --with-clean
>
> Satish
>
> On Sat, 30 Mar 2024, Barry Smith wrote:
>
>>
>> Can you check the value of IRHSCOMP in the debugger? Using gdb as the debugger may work better for this.
>>
>> Barry
>>
>>
>>> On Mar 30, 2024, at 3:46 AM, zeyu xia <xiazeyu01@gmail.com> wrote:
>>>
>>> This Message Is From an External Sender
>>> This message came from outside your organization.
>>> Hi! Thanks for your reply.
>>>
>>> There still exist some problems, as seen in the files 'configure.log', 'make check3.txt', and 'debug.txt' in the attachment. Particularly, the file 'debug.txt' contains the output of bt command of lldb.
>>>
>>> Thanks for your attention.
>>>
>>> Best regards,
>>> Zeyu Xia
>>>
>>>
>>> Satish Balay <balay@mcs.anl.gov <mailto:balay@mcs.anl.gov>> 于2024年3月30日周六 02:52写道：
>>>> I'm able to reproduce this error on a slightly older xcode [but don't know why this issue comes up]
>>>>
>>>>> Apple clang version 15.0.0 (clang-1500.1.0.2.5)
>>>>
>>>> Can you try using the additional configure options (along with LDFLAGS=-Wl,-ld_classic) and see if it works?
>>>>
>>>> COPTFLAGS=-O0 FOPTFLAGS=-O0
>>>>
>>>> Satish
>>>>
>>>> On Fri, 29 Mar 2024, zeyu xia wrote:
>>>>
>>>>> Hi! I am grateful for your prompt response.
>>>>>
>>>>> I follow your suggestions, and however, it still does not work. For the
>>>>> related information please find the files 'make check2.txt' and
>>>>> 'configure.log' in the attachment.
>>>>>
>>>>> If possible, please do me a favor again. Thanks for your patience.
>>>>>
>>>>> Best wishes,
>>>>> Zeyu Xia
>>>>>
>>>>>
>>>>> Satish Balay <balay@mcs.anl.gov <mailto:balay@mcs.anl.gov>> 于2024年3月29日周五 23:48写道：
>>>>>
>>>>>> Could you:
>>>>>>
>>>>>> - reinstall brew after the xcode upgrade (not just update)
>>>>>> <a href="https://urldefense.us/v3/__https://petsc.org/main/install/install/*installing-on-macos__;Iw!!G_uCfscf7eWS!dGItos-D58VSJn4kOlKy2TEX-PWhflbWfNuM0zqhEXbGniD5S13iWCxgBmg9wYk4OrSwaP6jjzANIHN1ZHATKXE$
>>>>>>">https://urldefense.us/v3/__https://petsc.org/main/install/install/*installing-on-macos__;Iw!!G_uCfscf7eWS!dGItos-D58VSJn4kOlKy2TEX-PWhflbWfNuM0zqhEXbGniD5S13iWCxgBmg9wYk4OrSwaP6jjzANIHN1ZHATKXE$
>>>>>></a>- not use --LDFLAGS=-Wl,-ld_classic
>>>>>>
>>>>>> And see if the problem persists?
>>>>>>
>>>>>> Satish
>>>>>>
>>>>>> On Fri, 29 Mar 2024, zeyu xia wrote:
>>>>>>
>>>>>>> Dear PETSc team:
>>>>>>>
>>>>>>> Recently I installed firedrake on MacOS (arm64) with the latest
>>>>>>> Xcode, and there seems some error with mumps. I ran two times of the
>>>>>>> command `make check`. The first time it just output wrong results, and
>>>>>> the
>>>>>>> second time it raised an error with Segmentation Violation. Please see
>>>>>> the
>>>>>>> files “make check.txt” and “configure.log” in the attachment.
>>>>>>>
>>>>>>> I will certainly be happy and grateful if you can take some time
>>>>>> to
>>>>>>> deal with this problem. Thanks for your patience.
>>>>>>>
>>>>>>> Best wishes,
>>>>>>> Zeyu Xia
>>>>>>>
>>>>>>
>>>>>
>>> <make check3.txt><configure.tar.gz><debug.txt>
>>
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