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On 29 Feb 2024, at 5: 06 PM, Matthew Knepley <knepley@ gmail. com> wrote:
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This message came from outside your organization.
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<meta http-equiv="content-type" content="text/html; charset=utf-8"></head><body style="overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;"><br id="lineBreakAtBeginningOfMessage"><div><br><blockquote type="cite"><div>On 29 Feb 2024, at 5:06 PM, Matthew Knepley <knepley@gmail.com> wrote:</div><br class="Apple-interchange-newline"><div><meta charset="UTF-8"><div dir="ltr" id="pfptBanner86odtmg" style="color-scheme: revert !important; writing-mode: revert !important; -webkit-ruby-position: revert !important; color: revert !important; font-family: revert !important; font-feature-settings: revert !important; font-kerning: revert !important; font-optical-sizing: revert !important; font-palette: revert !important; font-size: revert !important; font-size-adjust: revert !important; font-stretch: revert !important; font-style: revert !important; font-synthesis-small-caps: revert !important; font-synthesis-style: revert !important; font-synthesis-weight: revert !important; 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-webkit-line-clamp: unset !important; -webkit-line-grid: unset !important; -webkit-line-snap: unset !important; -webkit-nbsp-mode: unset !important; -webkit-rtl-ordering: unset !important; -webkit-text-decorations-in-effect: unset !important; -webkit-text-fill-color: unset !important; -webkit-text-security: unset !important; -webkit-text-stroke-color: unset !important; -webkit-text-stroke-width: unset !important; -webkit-user-drag: unset !important; -webkit-user-modify: unset !important; -webkit-user-select: unset !important; background-clip: unset !important; background-origin: unset !important; box-shadow: unset !important; mask-composite: unset !important; mask-mode: unset !important; text-combine-upright: unset !important; -webkit-background-clip: unset !important; -webkit-background-origin: unset !important; -webkit-box-shadow: unset !important; mask-size: unset !important; -webkit-mask: unset !important; -webkit-mask-composite: unset !important; -webkit-mask-source-type: unset !important; -webkit-text-combine: unset !important; display: block !important; visibility: visible !important; opacity: unset !important; background-color: rgb(208, 216, 220) !important; block-size: unset !important; border-block: unset !important; border-radius: unset !important; border-end-end-radius: unset !important; border-end-start-radius: unset !important; border-inline: unset !important; border-start-end-radius: unset !important; border-start-start-radius: unset !important; inset: unset !important; contain-intrinsic-block-size: unset !important; contain-intrinsic-size: unset !important; contain-intrinsic-inline-size: unset !important; height: unset !important; inline-size: unset !important; inset-block: unset !important; inset-inline: unset !important; margin-block: unset !important; margin-bottom: unset !important; margin-inline: unset !important; margin-left: unset !important; margin-right: unset !important; max-block-size: unset !important; max-height: unset !important; max-inline-size: unset !important; max-width: unset !important; min-block-size: unset !important; min-height: unset !important; min-inline-size: unset !important; min-width: unset !important; overscroll-behavior-block: unset !important; overscroll-behavior-inline: unset !important; overscroll-behavior: unset !important; padding-block: unset !important; padding: unset !important; padding-inline: unset !important; scroll-margin-block: unset !important; scroll-margin: unset !important; scroll-margin-inline: unset !important; scroll-padding-block: unset !important; scroll-padding: unset !important; scroll-padding-inline: unset !important; width: unset !important; margin-top: 2px !important;">This message came from outside your organization.</div></div><div style="height: 0px; clear: both !important; display: block !important; visibility: hidden !important; line-height: 0 !important; font-size: 0.01px !important;"></div></div><div dir="ltr" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;"><div dir="ltr">On Thu, Feb 29, 2024 at 11:03 AM Blondel, Sophie via petsc-users <<a href="mailto:petsc-users@mcs.anl.gov">petsc-users@mcs.anl.gov</a>> wrote:<br></div><div class="gmail_quote"><blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-style: solid; border-left-color: rgb(204, 204, 204); padding-left: 1ex;"><div class="msg2646287569393159098"><u></u><div dir="ltr" id="m_2646287569393159098pfptBanner3d9pkj3" style="display: block; text-align: left; margin: 16px 0px; padding: 8px 16px; border-radius: 4px; min-width: 200px; background-color: rgb(208, 216, 220); border-top-width: 4px; border-top-style: solid; border-top-color: rgb(144, 164, 174);"><div id="m_2646287569393159098pfptBanner3d9pkj3" style="float: left; display: block; margin: 0px 0px 1px; max-width: 600px;"><div id="m_2646287569393159098pfptBanner3d9pkj3" style="display: block; background-color: rgb(208, 216, 220); font-family: Arial, sans-serif; font-weight: bold; font-size: 14px; line-height: 18px;">This Message Is From an External Sender</div><div id="m_2646287569393159098pfptBanner3d9pkj3" style="font-weight: normal; display: block; background-color: rgb(208, 216, 220); font-family: Arial, sans-serif; font-size: 12px; line-height: 18px; margin-top: 2px;">This message came from outside your organization.</div></div><div style="height: 0px; clear: both; display: block; line-height: 0; font-size: 0.01px;"> </div></div><u></u><div dir="ltr"><div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">Thank you Junchao,</div><div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;"><br></div><div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">Yes, I am using gpu-aware MPI.</div><div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;"><br></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">Is "-use_gpu_aware_mpi 0" a runtime option or a compile option?</span></div></div></div></blockquote><div><br></div><div>That is a configure option, so</div></div></div></div></blockquote><div><br></div><div>No, it’s a runtime option, you don’t need to reconfigure, just add it to your command line arguments.</div><div><br></div><div>Thanks,</div><div>Pierre</div><br><blockquote type="cite"><div><div dir="ltr" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;"><div class="gmail_quote"><div> cd $PETSC_DIR</div><div> ./${PETSC_ARCH}/lib./petsc/conf/reconfigure-${PETSC_ARCH}.py -use-gpu_aware_mpi 0</div><div> make all</div><div><br></div><div> Thanks,</div><div><br></div><div> Matt</div><div> </div><blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-style: solid; border-left-color: rgb(204, 204, 204); padding-left: 1ex;"><div class="msg2646287569393159098"><div dir="ltr"><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">Best,</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;"><br></span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">Sophie<br></span></div><div id="m_2646287569393159098appendonsend"></div><hr style="display: inline-block; width: 702.375px;"><div id="m_2646287569393159098divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size: 11pt;"><b>From:</b><span class="Apple-converted-space"> </span>Junchao Zhang <<a href="mailto:junchao.zhang@gmail.com" target="_blank">junchao.zhang@gmail.com</a>><br><b>Sent:</b><span class="Apple-converted-space"> </span>Thursday, February 29, 2024 10:50<br><b>To:</b><span class="Apple-converted-space"> </span>Blondel, Sophie <<a href="mailto:sblondel@utk.edu" target="_blank">sblondel@utk.edu</a>><br><b>Cc:</b><span class="Apple-converted-space"> </span><a href="mailto:xolotl-psi-development@lists.sourceforge.net" target="_blank">xolotl-psi-development@lists.sourceforge.net</a><span class="Apple-converted-space"> </span><<a href="mailto:xolotl-psi-development@lists.sourceforge.net" target="_blank">xolotl-psi-development@lists.sourceforge.net</a>>;<span class="Apple-converted-space"> </span><a href="mailto:petsc-users@mcs.anl.gov" target="_blank">petsc-users@mcs.anl.gov</a><span class="Apple-converted-space"> </span><<a href="mailto:petsc-users@mcs.anl.gov" target="_blank">petsc-users@mcs.anl.gov</a>><br><b>Subject:</b><span class="Apple-converted-space"> </span>Re: [petsc-users] PAMI error on Summit</font><div> </div></div><div><table border="0" cellspacing="0" cellpadding="0" width="100%" align="left" style="border: 0px; display: table; width: 716.71875px; table-layout: fixed; float: none;"><tbody style="display: block;"><tr><td valign="middle" width="1px" bgcolor="#A6A6A6" cellpadding="7px 2px 7px 2px" style="padding: 7px 2px; background-color: rgb(166, 166, 166);"></td><td valign="middle" width="100%" bgcolor="#EAEAEA" cellpadding="7px 5px 7px 15px" style="width: 682.71875px; background-color: rgb(234, 234, 234); padding: 7px 5px 7px 15px; font-family: wf_segoe-ui_normal, "Segoe UI", "Segoe WP", Tahoma, Arial, sans-serif; font-size: 12px; font-weight: normal; color: rgb(33, 33, 33); text-align: left;"><div>You don't often get email from<span class="Apple-converted-space"> </span><a href="mailto:junchao.zhang@gmail.com" target="_blank">junchao.zhang@gmail.com</a>.<span class="Apple-converted-space"> </span><a href="https://urldefense.us/v3/__https://aka.ms/LearnAboutSenderIdentification__;!!G_uCfscf7eWS!facODjKBT4NdUpQRG3bRO5aufX56SW84P_ciaPKeSHjRxArfCGndt8hUfkRcvfjlBIbRbEra5PwQNlA6YnlFkp83$" target="_blank">Learn why this is important</a></div></td><td valign="middle" align="left" width="75px" bgcolor="#EAEAEA" cellpadding="7px 5px 7px 5px" style="width: 75px; background-color: rgb(234, 234, 234); padding: 7px 5px; font-family: wf_segoe-ui_normal, "Segoe UI", "Segoe WP", Tahoma, Arial, sans-serif; font-size: 12px; font-weight: normal; color: rgb(33, 33, 33); text-align: left;"></td></tr></tbody></table><div><div dir="ltr">Hi Sophie,<br> <span class="Apple-converted-space"> </span>PetscSFBcastEnd() was calling MPI_Waitall() to finish the communication in DMGlobalToLocal. <div> <span class="Apple-converted-space"> </span>I guess you used gpu-aware MPI. The error you saw might be due to it. You can try without it with a petsc option -use_gpu_aware_mpi 0</div><div> <span class="Apple-converted-space"> </span>But we generally recommend gpu-aware mpi. You can try on other GPU machines to see if it is just an IBM Spectrum MPI problem. <br></div><div><div><br></div> Thanks.<br clear="all"><div><div dir="ltr"><div dir="ltr">--Junchao Zhang</div></div></div><br></div></div><br><div><div dir="ltr">On Thu, Feb 29, 2024 at 9:17 AM Blondel, Sophie via petsc-users <<a href="mailto:petsc-users@mcs.anl.gov" target="_blank">petsc-users@mcs.anl.gov</a>> wrote:<br></div><blockquote style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-style: solid; border-left-color: rgb(204, 204, 204); padding-left: 1ex;"><div><u></u><div dir="ltr" id="m_2646287569393159098x_m_-6243325565900164169pfptBannertby07pi" style="display: block; text-align: left; margin: 16px 0px; padding: 8px 16px; border-radius: 4px; min-width: 200px; background-color: rgb(208, 216, 220); border-top-width: 4px; border-top-style: solid; border-top-color: rgb(144, 164, 174);"><div id="m_2646287569393159098x_m_-6243325565900164169pfptBannertby07pi" style="float: left; display: block; margin: 0px 0px 1px; max-width: 600px;"><div id="m_2646287569393159098x_m_-6243325565900164169pfptBannertby07pi" style="display: block; background-color: rgb(208, 216, 220); font-family: Arial, sans-serif; font-weight: bold; font-size: 14px; line-height: 18px;">This Message Is From an External Sender<span class="Apple-converted-space"> </span></div><div id="m_2646287569393159098x_m_-6243325565900164169pfptBannertby07pi" style="font-weight: normal; display: block; background-color: rgb(208, 216, 220); font-family: Arial, sans-serif; font-size: 12px; line-height: 18px; margin-top: 2px;">This message came from outside your organization.<span class="Apple-converted-space"> </span></div></div><div style="height: 0px; clear: both; display: block; line-height: 0; font-size: 0.01px;"> </div></div><u></u><div dir="ltr"><div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">Hi,</div><div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;"><br></div><div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">I am using PETSc build with the Kokkos CUDA backend on Summit but when I run my code with multiple MPI tasks I get the following error:</div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">0 TS dt 1e-12 time 0.</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">errno 14 pid 864558</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">xolotl: /__SMPI_build_dir__________________________/ibmsrc/pami/ibm-pami/buildtools/pami_build_port/../pami/components/devices/shmem/shaddr/CMAShaddr.h:164: size_t PAMI::Dev</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">ice::Shmem::CMAShaddr::read_impl(PAMI::Memregion*, size_t, PAMI::Memregion*, size_t, size_t, bool*): Assertion `cbytes > 0' failed.</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">errno 14 pid 864557</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">xolotl: /__SMPI_build_dir__________________________/ibmsrc/pami/ibm-pami/buildtools/pami_build_port/../pami/components/devices/shmem/shaddr/CMAShaddr.h:164: size_t PAMI::Dev</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">ice::Shmem::CMAShaddr::read_impl(PAMI::Memregion*, size_t, PAMI::Memregion*, size_t, size_t, bool*): Assertion `cbytes > 0' failed.</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] *** Process received signal ***</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] Signal: Aborted (6)</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] Signal code: (-6)</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [ 0] linux-vdso64.so.1(__kernel_sigtramp_rt64+0x0)[0x2000000604d8]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [ 1] /lib64/glibc-hwcaps/power9/<a href="https://urldefense.us/v3/__http://libc-2.28.so__;!!G_uCfscf7eWS!facODjKBT4NdUpQRG3bRO5aufX56SW84P_ciaPKeSHjRxArfCGndt8hUfkRcvfjlBIbRbEra5PwQNlA6YlO8YWjh$" target="_blank">libc-2.28.so</a>(gsignal+0xd8)[0x200005d796f8]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [ 2] /lib64/glibc-hwcaps/power9/<a href="https://urldefense.us/v3/__http://libc-2.28.so__;!!G_uCfscf7eWS!facODjKBT4NdUpQRG3bRO5aufX56SW84P_ciaPKeSHjRxArfCGndt8hUfkRcvfjlBIbRbEra5PwQNlA6YlO8YWjh$" target="_blank">libc-2.28.so</a>(abort+0x164)[0x200005d53ff4]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [ 3] /lib64/glibc-hwcaps/power9/<a href="https://urldefense.us/v3/__http://libc-2.28.so__;!!G_uCfscf7eWS!facODjKBT4NdUpQRG3bRO5aufX56SW84P_ciaPKeSHjRxArfCGndt8hUfkRcvfjlBIbRbEra5PwQNlA6YlO8YWjh$" target="_blank">libc-2.28.so</a>(+0x3d280)[0x200005d6d280]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [ 4] [e28n07:864558] *** Process received signal ***</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] Signal: Aborted (6)</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] Signal code: (-6)</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [ 0] linux-vdso64.so.1(__kernel_sigtramp_rt64+0x0)[0x2000000604d8]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [ 1] /lib64/glibc-hwcaps/power9/<a href="https://urldefense.us/v3/__http://libc-2.28.so__;!!G_uCfscf7eWS!facODjKBT4NdUpQRG3bRO5aufX56SW84P_ciaPKeSHjRxArfCGndt8hUfkRcvfjlBIbRbEra5PwQNlA6YlO8YWjh$" target="_blank">libc-2.28.so</a>(gsignal+0xd8)[0x200005d796f8]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [ 2] /lib64/glibc-hwcaps/power9/<a href="https://urldefense.us/v3/__http://libc-2.28.so__;!!G_uCfscf7eWS!facODjKBT4NdUpQRG3bRO5aufX56SW84P_ciaPKeSHjRxArfCGndt8hUfkRcvfjlBIbRbEra5PwQNlA6YlO8YWjh$" target="_blank">libc-2.28.so</a>(abort+0x164)[0x200005d53ff4]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [ 3] /lib64/glibc-hwcaps/power9/<a href="https://urldefense.us/v3/__http://libc-2.28.so__;!!G_uCfscf7eWS!facODjKBT4NdUpQRG3bRO5aufX56SW84P_ciaPKeSHjRxArfCGndt8hUfkRcvfjlBIbRbEra5PwQNlA6YlO8YWjh$" target="_blank">libc-2.28.so</a>(+0x3d280)[0x200005d6d280]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [ 4] /lib64/glibc-hwcaps/power9/<a href="https://urldefense.us/v3/__http://libc-2.28.so__;!!G_uCfscf7eWS!facODjKBT4NdUpQRG3bRO5aufX56SW84P_ciaPKeSHjRxArfCGndt8hUfkRcvfjlBIbRbEra5PwQNlA6YlO8YWjh$" target="_blank">libc-2.28.so</a>(__assert_fail+0x64)[0x200005d6d324]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [ 5] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/pami_port/libpami.so.3</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">(_ZN4PAMI8Protocol3Get7GetRdmaINS_6Device5Shmem8DmaModelINS3_11ShmemDeviceINS_4Fifo8WrapFifoINS7_10FifoPacketILj64ELj4096EEENS_7Counter15IndirectBoundedINS_6Atomic12NativeAt</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">omicEEELj256EEENSB_8IndirectINSB_6NativeEEENS4_9CMAShaddrELj256ELj512EEELb0EEESL_E6simpleEP18pami_rget_simple_t+0x1d8)[0x20007f3971d8]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [ 6] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/pami_port/libpami.so.3</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">(_ZN4PAMI8Protocol3Get13CompositeRGetINS1_4RGetES3_E6simpleEP18pami_rget_simple_t+0x40)[0x20007f2ecc10]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [ 7] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/pami_port/libpami.so.3</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">(_ZN4PAMI7Context9rget_implEP18pami_rget_simple_t+0x28c)[0x20007f31a78c]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [ 8] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/pami_port/libpami.so.3</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">(PAMI_Rget+0x18)[0x20007f2d94a8]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [ 9] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/spectrum_mpi/mca_pml_p</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">ami.so(process_rndv_msg+0x46c)[0x2000a80159ac]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [10] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/spectrum_mpi/mca_pml_p</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">ami.so(pml_pami_recv_rndv_cb+0x2bc)[0x2000a801670c]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [11] /lib64/glibc-hwcaps/power9/<a href="https://urldefense.us/v3/__http://libc-2.28.so__;!!G_uCfscf7eWS!facODjKBT4NdUpQRG3bRO5aufX56SW84P_ciaPKeSHjRxArfCGndt8hUfkRcvfjlBIbRbEra5PwQNlA6YlO8YWjh$" target="_blank">libc-2.28.so</a>(__assert_fail+0x64)[0x200005d6d324]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [ 5] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/pami_port/libpami.so.3</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">(_ZN4PAMI8Protocol3Get7GetRdmaINS_6Device5Shmem8DmaModelINS3_11ShmemDeviceINS_4Fifo8WrapFifoINS7_10FifoPacketILj64ELj4096EEENS_7Counter15IndirectBoundedINS_6Atomic12NativeAt</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">omicEEELj256EEENSB_8IndirectINSB_6NativeEEENS4_9CMAShaddrELj256ELj512EEELb0EEESL_E6simpleEP18pami_rget_simple_t+0x1d8)[0x20007f3971d8]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [ 6] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/pami_port/libpami.so.3</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">(_ZN4PAMI8Protocol3Get13CompositeRGetINS1_4RGetES3_E6simpleEP18pami_rget_simple_t+0x40)[0x20007f2ecc10]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [ 7] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/pami_port/libpami.so.3</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">(_ZN4PAMI7Context9rget_implEP18pami_rget_simple_t+0x28c)[0x20007f31a78c]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [ 8] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/pami_port/libpami.so.3</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">(PAMI_Rget+0x18)[0x20007f2d94a8]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [ 9] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/spectrum_mpi/mca_pml_p</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">ami.so(process_rndv_msg+0x46c)[0x2000a80159ac]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [10] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/spectrum_mpi/mca_pml_p</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">ami.so(pml_pami_recv_rndv_cb+0x2bc)[0x2000a801670c]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [11] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/pami_port/libpami.so.3</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">(_ZN4PAMI8Protocol4Send11EagerSimpleINS_6Device5Shmem11PacketModelINS3_11ShmemDeviceINS_4Fifo8WrapFifoINS7_10FifoPacketILj64ELj4096EEENS_7Counter15IndirectBoundedINS_6Atomic</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">12NativeAtomicEEELj256EEENSB_8IndirectINSB_6NativeEEENS4_9CMAShaddrELj256ELj512EEEEELNS1_15configuration_tE5EE15dispatch_packedEPvSP_mSP_SP_+0x4c)[0x20007f2e30ac]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [12] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/pami_port/libpami.so.3</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">(PAMI_Context_advancev+0x6b0)[0x20007f2da540]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [13] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/spectrum_mpi/mca_pml_p</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">ami.so(mca_pml_pami_progress+0x34)[0x2000a80073e4]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [14] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/libopen-pal.so.3(opal_</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">progress+0x6c)[0x20003d60640c]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [15] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/libmpi_ibm.so.3(ompi_r</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">equest_default_wait_all+0x144)[0x2000034c4b04]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [16] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/libmpi_ibm.so.3(PMPI_W</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">aitall+0x10c)[0x20000352790c]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [17] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/pami_port/libpami.so.3</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">(_ZN4PAMI8Protocol4Send11EagerSimpleINS_6Device5Shmem11PacketModelINS3_11ShmemDeviceINS_4Fifo8WrapFifoINS7_10FifoPacketILj64ELj4096EEENS_7Counter15IndirectBoundedINS_6Atomic</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">12NativeAtomicEEELj256EEENSB_8IndirectINSB_6NativeEEENS4_9CMAShaddrELj256ELj512EEEEELNS1_15configuration_tE5EE15dispatch_packedEPvSP_mSP_SP_+0x4c)[0x20007f2e30ac]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [12] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/pami_port/libpami.so.3</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">(PAMI_Context_advancev+0x6b0)[0x20007f2da540]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [13] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/spectrum_mpi/mca_pml_p</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">ami.so(mca_pml_pami_progress+0x34)[0x2000a80073e4]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [14] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/libopen-pal.so.3(opal_</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">progress+0x6c)[0x20003d60640c]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [15] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/libmpi_ibm.so.3(ompi_r</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">equest_default_wait_all+0x144)[0x2000034c4b04]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [16] /sw/summit/spack-envs/summit-plus/opt/gcc-12.1.0/spectrum-mpi-10.4.0.6-20230210-db5xakaaqowbhp3nqwebpxrdbwtm4knu/container/../lib/libmpi_ibm.so.3(PMPI_W</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">aitall+0x10c)[0x20000352790c]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [17] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(+0x3ca7b0)[0x2000004ea7b0]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [18] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(+0x3ca7b0)[0x2000004ea7b0]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [18] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(+0x3c5e68)[0x2000004e5e68]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [19] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(+0x3c5e68)[0x2000004e5e68]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [19] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(PetscSFBcastEnd+0x74)[0x2000004c9214]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [20] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(PetscSFBcastEnd+0x74)[0x2000004c9214]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [20] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(+0x3b4cb0)[0x2000004d4cb0]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [21] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(+0x3b4cb0)[0x2000004d4cb0]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [21] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(VecScatterEnd+0x178)[0x2000004dd038]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [22] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(VecScatterEnd+0x178)[0x2000004dd038]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [22] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(+0x1112be0)[0x200001232be0]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [23] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(+0x1112be0)[0x200001232be0]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [23] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(DMGlobalToLocalEnd+0x470)[0x200000e9b0f0]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [24] /gpfs/alpine2/mat267/proj-shared/code/xolotl-stable-cuda/xolotl/solver/libxolotlSolver.so(_ZN6xolotl6solver11PetscSolver11rhsFunctionEP5_p_TSdP6_p_VecS5</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">_+0xc4)[0x200005f710d4]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [25] /gpfs/alpine2/mat267/proj-shared/code/xolotl-stable-cuda/xolotl/solver/libxolotlSolver.so(_ZN6xolotl6solver11RHSFunctionEP5_p_TSdP6_p_VecS4_Pv+0x2c)[0x2</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">00005f7130c]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [26] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(DMGlobalToLocalEnd+0x470)[0x200000e9b0f0]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [24] /gpfs/alpine2/mat267/proj-shared/code/xolotl-stable-cuda/xolotl/solver/libxolotlSolver.so(_ZN6xolotl6solver11PetscSolver11rhsFunctionEP5_p_TSdP6_p_VecS5</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">_+0xc4)[0x200005f710d4]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [25] /gpfs/alpine2/mat267/proj-shared/code/xolotl-stable-cuda/xolotl/solver/libxolotlSolver.so(_ZN6xolotl6solver11RHSFunctionEP5_p_TSdP6_p_VecS4_Pv+0x2c)[0x2</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">00005f7130c]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [26] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(TSComputeRHSFunction+0x1bc)[0x2000017621dc]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [27] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(TSComputeRHSFunction+0x1bc)[0x2000017621dc]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [27] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(TSComputeIFunction+0x418)[0x200001763ad8]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [28] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(TSComputeIFunction+0x418)[0x200001763ad8]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [28] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(+0x16f2ef0)[0x200001812ef0]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] [29] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(+0x16f2ef0)[0x200001812ef0]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] [29] /gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(TSStep+0x228)[0x200001768088]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864557] *** End of error message ***</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">/gpfs/alpine2/mat267/proj-shared/dependencies/petsc-kokkos-cuda/lib/libpetsc.so.3.020(TSStep+0x228)[0x200001768088]</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">[e28n07:864558] *** End of error message ***</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;"><br></span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">It seems to be pointing to<span class="Apple-converted-space"> </span><a href="https://urldefense.us/v3/__https://petsc.org/release/manualpages/PetscSF/PetscSFBcastEnd/__;!!G_uCfscf7eWS!Y8h5WLnoArdfhK2_UDmISOEiqxAN9gBUzvWniKOoMwtA9cGjg8w9sYX6V8aIgfzL8Uhea5ppiRbuTGr1jZ_R2DOV$" target="_blank">https://petsc.org/release/manualpages/PetscSF/PetscSFBcastEnd/</a><span class="Apple-converted-space"> </span>so I wanted to check if you had seen this type of error before and if it could be related to how the code is compiled or run. Let me know if I can provide any additional information.</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;"><br></span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">Best,</span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;"><br></span></div><div><span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">Sophie<br></span></div></div></div></blockquote></div></div></div></div></div></blockquote></div><br clear="all"><div><br></div><span class="gmail_signature_prefix">--<span class="Apple-converted-space"> </span></span><br><div dir="ltr" class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>-- Norbert Wiener</div><div><br></div><div><a href="https://urldefense.us/v3/__http://www.cse.buffalo.edu/*knepley/__;fg!!G_uCfscf7eWS!alnN9lGj6QLPXpVJ1V1bDi40lqd3DTGEpANSS9orjCElucgd0fAjX5VcHJ7J8afDWcWiUr8Fg2QwHxAwswTs$" target="_blank">https://www.cse.buffalo.edu/~knepley/</a></div></div></div></div></div></div></div></div></div></blockquote></div><br></body></html>