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On Thu, Jan 18, 2024 at 3: 08 PM Matthew Knepley <knepley@ gmail. com> wrote: On Thu, Jan 18, 2024 at 1: 20 PM Mark Adams <mfadams@ lbl. gov> wrote: I had this working at one point. Should I add PetscViewerHDF5PushTimestepping? I don't
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<div dir="ltr"><div dir="ltr"><br></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, Jan 18, 2024 at 3:08 PM Matthew Knepley <<a href="mailto:knepley@gmail.com">knepley@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div dir="ltr">On Thu, Jan 18, 2024 at 1:20 PM Mark Adams <<a href="mailto:mfadams@lbl.gov" target="_blank">mfadams@lbl.gov</a>> wrote:<br></div><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">I had this working at one point.<div><br></div><div>Should I add <span style="color:rgb(80,0,80)">PetscViewerHDF5PushTimesteppin</span><span style="color:rgb(80,0,80)">g? </span></div><div><span style="color:rgb(80,0,80)">I don't create a viewer now, but I could make one.</span></div></div></blockquote><div><br></div><div>That will make it work. The real fix would be to check at swarm.c:45 to see whether timestepping is set.</div></div></div></blockquote><div><br></div><div>Did you fix this? I do see PetscCall(PetscViewerHDF5SetTimestep(viewer, seqnum)); at swarm.c:45</div><div><br></div><div>But, I still need to comment out the check to get this to work.</div><div><br></div><div>Thanks,</div><div>Mark </div><div><br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div class="gmail_quote"><div><br></div><div> Thanks,</div><div><br></div><div> Matt</div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div><span style="color:rgb(80,0,80)">Thanks,</span></div><div><span style="color:rgb(80,0,80)">Mark</span></div></div><div dir="ltr"><div dir="ltr"><br></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, Jan 18, 2024 at 11:26 AM Matthew Knepley <<a href="mailto:knepley@gmail.com" target="_blank">knepley@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div dir="ltr">On Thu, Jan 18, 2024 at 10:08 AM Mark Adams <<a href="mailto:mfadams@lbl.gov" target="_blank">mfadams@lbl.gov</a>> wrote:<br></div><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">I am trying to view a DMSwarm with: -weights_view hdf5:part.h5<div><br></div><div> Vec f;<br> PetscCall(DMSetOutputSequenceNumber(sw, 0, 0.0));<br> PetscCall(DMSwarmCreateGlobalVectorFromField(sw, "w_q", &f));<br> PetscCall(PetscObjectSetName((PetscObject)f, "particle weights"));<br> PetscCall(VecViewFromOptions(f, NULL, "-weights_view"));<br> PetscCall(DMSwarmDestroyGlobalVectorFromField(sw, "w_q", &f));<br></div><div><br></div><div>And I get this error. I had this working once and did not set PetscViewerHDF5PushTimestepping, so I wanted to check.</div></div></blockquote><div><br></div><div>We probably were not checking then. We might have to check there when we set the timestep.</div><div><br></div><div> Thanks,</div><div><br></div><div> Matt</div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div>Thanks,</div><div>Mark</div><div><br></div><div><br></div><div>[0]PETSC ERROR: Object is in wrong state<br>[0]PETSC ERROR: Timestepping has not been pushed yet. Call PetscViewerHDF5PushTimestepping() first<br>[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc!<br>[0]PETSC ERROR: Option left: name:-options_left (no value) source: command line<br>[0]PETSC ERROR: See <a href="https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!cD7sluQj9NiJty0xU3K76VpLTY-Rrg5Yt76rcjqqqRBJrORnOfs8HUpFGI3GWx5NmacCoQMG4Rzh9rws_R_xRvs$" target="_blank">https://petsc.org/release/faq/</a> for trouble shooting.<br>[0]PETSC ERROR: Petsc Development GIT revision: v3.20.3-461-g585a01bd688 GIT Date: 2024-01-16 23:32:45 +0000<br>[0]PETSC ERROR: ./ex30k on a arch-macosx-gnu-O named MarksMac-302.local by markadams Thu Jan 18 10:05:53 2024<br>[0]PETSC ERROR: Configure options CFLAGS="-g -Wno-deprecated-declarations " CXXFLAGS="-g -Wno-deprecated-declarations " COPTFLAGS=-O CXXOPTFLAGS=-O --with-cc=/usr/local/opt/llvm/bin/clang --with-cxx=/usr/local/opt/llvm/bin/clang++ --download-mpich --with-strict-petscerrorcode --download-triangle=1 --with-debugging=0 --download-hdf5=1 PETSC_ARCH=arch-macosx-gnu-O<br>[0]PETSC ERROR: #1 PetscViewerHDF5SetTimestep() at /Users/markadams/Codes/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c:990<br>[0]PETSC ERROR: #2 VecView_Swarm_HDF5_Internal() at /Users/markadams/Codes/petsc/src/dm/impls/swarm/swarm.c:45<br>[0]PETSC ERROR: #3 VecView_Swarm() at /Users/markadams/Codes/petsc/src/dm/impls/swarm/swarm.c:86<br>[0]PETSC ERROR: #4 VecView() at /Users/markadams/Codes/petsc/src/vec/vec/interface/vector.c:806<br>[0]PETSC ERROR: #5 PetscObjectView() at /Users/markadams/Codes/petsc/src/sys/objects/destroy.c:76<br>[0]PETSC ERROR: #6 PetscObjectViewFromOptions() at /Users/markadams/Codes/petsc/src/sys/objects/destroy.c:128<br>[0]PETSC ERROR: #7 VecViewFromOptions() at /Users/markadams/Codes/petsc/src/vec/vec/interface/vector.c:691<br></div></div>
</blockquote></div><br clear="all"><div><br></div><span class="gmail_signature_prefix">-- </span><br><div dir="ltr" class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>-- Norbert Wiener</div><div><br></div><div><a href="https://urldefense.us/v3/__http://www.cse.buffalo.edu/*knepley/__;fg!!G_uCfscf7eWS!cD7sluQj9NiJty0xU3K76VpLTY-Rrg5Yt76rcjqqqRBJrORnOfs8HUpFGI3GWx5NmacCoQMG4Rzh9rws_GyIuzA$" target="_blank">https://www.cse.buffalo.edu/~knepley/</a><br></div></div></div></div></div></div></div></div>
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</blockquote></div><br clear="all"><div><br></div><span class="gmail_signature_prefix">-- </span><br><div dir="ltr" class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>-- Norbert Wiener</div><div><br></div><div><a href="https://urldefense.us/v3/__http://www.cse.buffalo.edu/*knepley/__;fg!!G_uCfscf7eWS!cD7sluQj9NiJty0xU3K76VpLTY-Rrg5Yt76rcjqqqRBJrORnOfs8HUpFGI3GWx5NmacCoQMG4Rzh9rws_GyIuzA$" target="_blank">https://www.cse.buffalo.edu/~knepley/</a><br></div></div></div></div></div></div></div></div>
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