================================================================================ ================================================================================ Starting configure run at Sat, 30 Sep 2023 12:57:55 +0800 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --prefix=/home/ivanluthfi1/petsc-3.13.6/nodebug-3.13.6-superlud --with-fc=0 --download-f2cblaslapack=1 --with-blaslapack-lib=libsunperf.a --with-blas-lib=libblas.a --with-lapack-lib=liblapack.a --download-make --with-cc=gcc --with-cxx=/home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx --download-cmake --with-X=1 --download-superlu_dist --download-parmetis --with-parmetis-lib=libparmetis.a --with-cc=/home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc --download-metis --with-metis-lib=libmetis.a --download-ptscotch Working directory: /home/ivanluthfi1/petsc-3.13.6 Machine platform: uname_result(system='Linux', node='LeoM115', release='2.6.32-754.35.1.el6.x86_64', version='#1 SMP Sat Nov 7 12:42:14 UTC 2020', machine='x86_64', processor='x86_64') Python version: 3.6.3 (default, Dec 15 2021, 20:28:46) [GCC 4.4.7 20120313 (Red Hat 4.4.7-23)] ================================================================================ ================================================================================ TEST configureExternalPackagesDir from config.framework(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/framework.py:934) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:934) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/utilities/debuggers.py:21) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking for program /usr/lib64/qt-3.3/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux child config.utilities.debuggers 0.017517 ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 13 #define PETSC_VERSION_SUBMINOR 6 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "Sep 29, 2020" #define PETSC_VERSION_GIT "v3.13.6" #define PETSC_VERSION_DATE_GIT "2020-09-29 08:38:40 -0500" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.005485 ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000659 ================================================================================ TEST configureGit from config.sourceControl(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/lib64/qt-3.3/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Running Executable WITHOUT threads to time it out Executing: git --version stdout: git version 1.7.1 child config.sourceControl 0.006214 ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) This is a tarball installation child PETSc.options.petscclone 0.001927 ================================================================================ TEST setNativeArchitecture from PETSc.options.arch(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/arch.py:31) TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ================================================================================ TEST configureArchitecture from PETSc.options.arch(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/arch.py:43) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set No previous hashfile found Setting hashfile: arch-linux-c-debug/lib/petsc/conf/configure-hash Deleting configure hash file: arch-linux-c-debug/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-linux-c-debug/lib/petsc/conf/configure-hash child PETSc.options.arch 0.019076 ================================================================================ TEST setInstallDir from PETSc.options.installDir(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/home/ivanluthfi1/petsc-3.13.6/nodebug-3.13.6-superlud" ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/installDir.py:80) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:80) ================================================================================ TEST cleanConfDir from PETSc.options.installDir(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/installDir.py:73) TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:73) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/installDir.py:57) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:57) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /home/ivanluthfi1/petsc-3.13.6/arch-linux-c-debug/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/installDir.py:93) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:93) child PETSc.options.installDir 0.001270 ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000270 ================================================================================ TEST configureCLanguage from PETSc.options.languages(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.000564 ================================================================================ TEST printEnvVariables from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1726) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1726) **** printenv **** HOSTNAME=LeoM115 SELINUX_ROLE_REQUESTED= SHELL=/bin/bash TERM=xterm-256color HISTSIZE=1000 SSH_CLIENT=220.135.137.90 56376 22 SELINUX_USE_CURRENT_RANGE= QTDIR=/usr/lib64/qt-3.3 QTINC=/usr/lib64/qt-3.3/include SSH_TTY=/dev/pts/1 USER=ivanluthfi1 LS_COLORS=rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lz=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.bz=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.rar=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45: LD_LIBRARY_PATH=/home/ivanluthfi1/openmpi/opt-4.1.1/lib PATH=/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/ivanluthfi1/openmpi/opt-4.1.1/bin MAIL=/var/spool/mail/ivanluthfi1 PWD=/home/ivanluthfi1/petsc-3.13.6 LANG=en_US.UTF-8 SELINUX_LEVEL_REQUESTED= HISTCONTROL=ignoredups SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass HOME=/home/ivanluthfi1 SHLVL=1 LOGNAME=ivanluthfi1 CVS_RSH=ssh QTLIB=/usr/lib64/qt-3.3/lib SSH_CONNECTION=220.135.137.90 56376 140.115.26.14 22 LESSOPEN=||/usr/bin/lesspipe.sh %s G_BROKEN_FILENAMES=1 ================================================================================ TEST resetEnvCompilers from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1733) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1733) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1763) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1763) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1696) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1696) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1717) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1717) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:460) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:460) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:635) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:635) Locate a functional C compiler Checking for program /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc...found Defined make macro "CC" to "/home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc" All intermediate test results are stored in /tmp/petsc-w22h8k_x All intermediate test results are stored in /tmp/petsc-w22h8k_x/config.setCompilers Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o Testing executable /tmp/petsc-w22h8k_x/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-w22h8k_x/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-w22h8k_x/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc --version stdout: gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:674) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:674) Locate a functional C preprocessor Checking for program /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc...found Defined make macro "CPP" to "/home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkCUDACompiler from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:710) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:710) Locate a functional CUDA compiler Checking for program /usr/lib64/qt-3.3/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /usr/local/sbin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /home/ivanluthfi1/openmpi/opt-4.1.1/bin/nvcc...not found Checking for program /home/ivanluthfi1/petsc-3.13.6/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['make'] ['dbus-monitor', 'link', 'vi', 'iptables-xml-1.4.7', 'fusermount', 'mkdir', 'tracepath6', 'cp', 'nano', 'mailx', 'cgclassify', 'traceroute6', 'zcat', 'ps', 'bash', 'dbus-uuidgen', 'umount', 'login', 'chgrp', 'tracepath', 'sync', 'nice', 'alsaunmute', 'sort', 'true', 'tar', 'fgrep', 'traceroute', 'more', 'netstat', 'date', 'gettext', 'rm', 'unlink', 'kbd_mode', 'echo', 'ypdomainname', 'view', 'loadkeys', 'mknod', 'rmdir', 'dd', 'egrep', 'mktemp', 'dash', 'kill', 'tcsh', 'mountpoint', 'dmesg', 'setfont', 'gtar', 'chown', 'unicode_stop', 'cgsnapshot', 'cgexec', 'gzip', 'sed', 'cgcreate', 'csh', 'lssubsys', 'cpio', 'pwd', 'lsblk', 'mv', 'dnsdomainname', 'env', 'plymouth', 'gawk', 'mail', 'unicode_start', 'cat', 'uname', 'dumpkeys', 'ksh', 'rnano', 'logger', 'dbus-daemon', 'stty', 'rvi', 'hostname', 'sleep', 'taskset', 'usleep', 'ed', 'keyctl', 'setserial', 'chmod', 'ping', 'cgset', 'iptables-xml', 'dbus-cleanup-sockets', 'gunzip', 'su', 'grep', 'mount', 'redhat_lsb_init', 'sh', 'ipcalc', 'cut', 'arch', 'lscgroup', 'ln', 'touch', 'dbus-run-session', 'find', 'nisdomainname', 'raw', 'basename', 'cgdelete', 'rview', 'df', 'ex', 'ulockmgr_server', 'ls', 'domainname', 'findmnt', 'ksh93', 'cgget', 'red', 'false', 'ping6', 'rpm', 'awk', 'readlink', 'dbus-send'] ['rhythmbox', 'packagekit-bugreport.sh', 'xkbcomp', 'hwloc-gather-topology', 'ocount', 'cpan', 'proxy', 'ciptool', 'pbm2l7k', 'grn', 'foomatic-configure', 'smbcontrol', 'nfs4_editfacl', 'xsubpp', 'aulastlog', 'oodraw', 'peekfd', 'protoize', 'dvd+rw-mediainfo', 'certmaster-getcert', 'padsp', 'krb5-config', 'dfutool', 'pinentry', 'xdg-screensaver', 'sctp_darn', 'dbusxx-introspect', 'xlsfonts', 'col', 'dvdrecord', 'findsmb', 'htdbm', 'time', 'dvipdf', 'mxtar', 'fusermount', 'system-config-users', 'tput', 'funzip', 'cpack', 'logresolve', 'cd-read', 'id', 'abrt-action-analyze-oops', 'theora_encode', 'opjitconv', 'semodule_deps', 'detect_ppa', 'enchant', 'c2070', 'bzip2', 'gzexe', 'gsdj', 'pip', 'min12xxw', 'nautilus-sendto', 'unexpand', 'mtools', 'smbclient', 'foomatic-ppdfile', 'uniq', 'easy_install-2.6', 'rhythmbox-client', 'seq', 'evolution', 'evince-thumbnailer', 'aclocal-1.11', 'gnome-keyring', 'sane-find-scanner', 'pkgenpack', 'gstack', 'autom4te', 'rarian-sk-get-cl', 'hal-get-property', 'btrace', 'kadmin', 'reporter-rhtsupport', 'nmcli', 'numademo', 'freetype-config', 'spice-vdagent', 'sharesec', 'ps2ps', 'zipnote', 'smp_rep_exp_route_tbl', 'ddate', 'valgrind', 'pf2afm', 'yum-debug-dump', 'msgcomm', 'rpcclient', 'post-grohtml', 'nm-connection-editor', 'dwell-click-applet', 'xmllint', 'ab', 'abrt-action-save-package-data', 'xxd', 'rrdtool', 'lzma', 'system-setup-keyboard', 'dvcont', 'usb-devices', 'zsoelim', 'orca', 'signtool', 'ekiga', 'pm-utils-bugreport-info.sh', 'tty', 'sprof', 'nano', 'mkxauth', 'lprm.cups', 'kbdrate', 'bmp2tiff', 'rrdupdate', 'ptar', 'abrt-cli-root', 'sctp_status', 'system-config-date', 'autoheader', 'splain', 'test-speech', 'fipscheck', 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'smp_conf_route_info', 'satyr', 'rmiregistry', 'evince-previewer', 'rsvg-view', 'lastb', 'c89', 'ypmatch', 'c++filt', 'w', 'unpack200', 'report', 'klist', 'indxbib', 'nautilus-connect-server', 'cheese', 'xdriinfo', 'sndfile-resample', 'pstree.x11', 'abrt-action-save-kernel-data', 'cdda2ogg', 'who', 'mkfifo', 'gettext.sh', 'hwloc-info', 'runcon', 'gettextize', 'combinedeltarpm', 'cg_diff', 'cas', 'dir', 'c99', 'slogin', 'tiffinfo', 'look', 'ypcat', 'gvfs-copy', 'i386', 'iostat', 'timeout', 'abrt-action-analyze-ccpp-local', 'du', 'gdbus', 'rpm2cpio', 'activation-client', 'stdbuf', 'scrollkeeper-gen-seriesid', 'growisofs', 'resizecons', 'gtbl', 'theora_player.bin', 'xzcat', 'kinit', 'gnomevfs-mv', 'system-config-printer-applet', 'gsdj500', 'db_upgrade', 'numactl', 'nproc', 'git-upload-archive', 'fail2ban-server', 'getfacl', 'lpr', 'iok', 'find', 'pcregrep', 'at', 'locale', 'bonobo-activation-run-query', 'qmove', 'shuf', 'purple-url-handler', 'htpasswd', 'whereis', 'qnodes', 'gnome-text-editor', 'aserver', 'pdfimages', 'imsettings-restart', 'nss-policy-check', 'alsa-info', 'rarian-sk-get-scripts', 'libwacom-list-local-devices', 'qenable', 'setup', 'gnome-keybinding-properties', 'yes', 'pod2man', 'enc2xs', 'tac', 'less', 'fail2ban-regex', 'db_verify', 'pack200', 'abrt-gui-root', 'cue2toc', 'cloog', 'makedeltarpm', 'lshal', 'ps2pdf12', 'gnome-panel', 'cdrecord', 'sdptool', 'opcontrol', 'lzmainfo', 'xsltproc', 'totem-audio-preview', 'xvinfo', 'tiff2rgba', 'foomatic-printjob', 'size', 'smp_rep_phy_err_log', 'purple-remote', 'reporter-mailx', 'ps2pdfwr', 'pre-grohtml', 'qgpureset', 'sndfile-convert', 'update-gio-modules', 'rsvg-convert', 'slabtop', 'gst-inspect-0.10', 'gpasswd', 'gvfs-monitor-file', 'xzdiff', 'strace-log-merge', 'atrm', 'gpgv2', 'flac', 'dvd+rw-format', 'libtool', 'rpmsign', 'nl', 'killall', 'syndaemon', 'semodule_link', 'prove', 'pcre-config', 'create-branching-keyboard', 'kasumi', 'ulockmgr_server', 'fc-scan', 'ccmake', 'links', 'gaim', 'yelp', 'getcifsacl', 'gvfs-info', 'a2p', 'msgconv', 'ipcmk', 'pl2pm', 'test', 'alsamixer', 'lzcat', 'bluetooth-properties', 'write', 'consolehelper-gtk', 'compiz', 'locate', 'gdk-pixbuf-query-loaders-64', 'getopt', 'reporter-upload', 'find-repos-of-install', 'diff-jars', 'infocmp', 'grolbp', 'mcheck', 'libreoffice', 'sndfile-regtest', 'isosize', 'config_data', 'scrollkeeper-preinstall', 'servertool', 'ttmkfdir', 'blkparse', 'xstdcmap', 'mapscrn', 'dircolors', 'amuFormat.sh', 'repoclosure', 'rarian-sk-get-content-list', 'pdbedit', 'pstack', 'setup-nsssysinit.sh', 'sgmlwhich', 'totem-video-indexer', 'ekiga-config-tool', 'mailq.postfix', 'dbiprof', 'hcitool', 'hal-disable-polling', 'newgrp', 'gvfs-save', 'lkbib', 'pinentry-gtk', 'uuclient', 'startx', 'truncate', 'gvfs-set-attribute', 'ltrace', 'gnome-typing-monitor', 'gsnd', 'gvfs-open', 'autoupdate', 'setfacl', 'lzfgrep', 'gtk-query-immodules-2.0-64', 'mcd', 'oddjob_request', 'lessecho', 'od', 'foomatic-combo-xml', 'linux64', 'zdiff', 'autoreconf', 'gnome-open', 'sim_client', 'xdg-open', 'ooviewdoc', 'tiffset', 'dirname', 'ophelp', 'hwloc-bind', 'gconf-merge-tree', 'gnome-session-properties', 'eu-nm', 'db_deadlock', 'gst-xmlinspect-0.10', 'shasum', 'eject', 'notify-send', 'eu-unstrip', 'gnome-font-viewer', 'isovfy', 'file', 'isodebug', 'keytool', 'gnote', 'chsh', 'xzless', 'cvs', 'mrd', 'qstart', 'lwp-rget', 'scrollkeeper-extract', 'chvt', 'btparser', 'gslp', 'gvfs-rename', 'smp_phy_test', 'scl', 'sedispol', 'rmail', 'lp', 'fprintd-delete', 'rarian-sk-config', 'envsubst', 'lzmadec', 'abrt-action-trim-files', 'package-cleanup', 'lsattr', 'git', 'wget', 'sadf', 'whiptail', 'unzipsfx', 'repomanage', 'vorbiscomment', 'cjet', 'build-classpath', 'system-config-services', 'pic2graph', 'rrdcgi', 'groups', 'imsettings-info', 'instmodsh', 'gssdp-device-sniffer', 'nfs4_getfacl', 'rarian-sk-migrate', 'qstop', 'perldoc', 'x86_64-redhat-linux-g++', 'pdf2ps', 'xsetroot', 'isdv4-serial-inputattach', 'pinentry-curses', 'awk', 'zless', 'strace', 'smbprint', 'scrollkeeper-config', 'rarian-sk-extract', 'toc2cddb', 'make.bak', 'deallocvt', 'pod2usage', 'abrt-action-analyze-c', 'fprintd-enroll', 'vino-preferences', 'pidgin', 'gnome-power-preferences', 'newaliases.postfix', 'gnome-screensaver-command', 'aseqnet', 'gpk-prefs', 'xwininfo', 'db_codegen', 'ppm2tiff', 'report-newt', 'authconfig-gtk', 'lsusb.py', 'lzdiff', 'ssh-agent', 'yumdownloader', 'aclocal', 'wish8.5', 'system-config-network-cmd', 'readlink', 'oomath', 'firefox', 'iso-read', 'build-jar-repository', 'psed', 'tiffcrop', 'k5srvutil', 'eu-strings', 'gpg', 'update-gdk-pixbuf-loaders', 'bdftops', 'install'] [] ['adsl-stop', 'sasldblistusers2', 'pk-device-rebind', 'tcpd', 'sktest', 'saned', 'pm-hibernate', 'atd', 'pppoe-discovery', 'load_policy', 'readprofile', 'xfs_db', 'rpcdebug', 'tracepath6', 'nfsstat', 'cupsreject', 'ntp-keygen', 'httpd.event', 'rotatelogs', 'pm-suspend-hybrid', 'selinuxenabled', 'lusermod', 'qnoded', 'cache_restore', 'lpc', 'setenforce', 'chat', 'apachectl', 'cupsaddsmb', 'smartctl', 'era_check', 'postkick', 'ipa-getkeytab', 'pppoe-stop', 'acpid', 'biosdecode', 'foomatic-addpjloptions', 'lnstat', 'postlock', 'spice-vdagentd', 'pm-suspend', 'pppoe-relay', 'getsebool', 'raid-check', 'sim_server', 'foomatic-cleanupdrivers', 'setquota', 'showmount', 'xfs_rtcp', 'pppoe-setup', 'system-config-keyboard', 'thin_dump', 'tracepath', 'adsl-start', 'grpunconv', 'reject', 'era_dump', 'tcpdump', 'gdm-binary', 'foomatic-extract-text', 'httpd.worker', 'foomatic-printermap-to-gutenprint-xml', 'postlog', 'abrtd', 'thin_delta', 'adsl-setup', 'lsusb', 'nfsidmap', 'pwconv', 'ntsysv', 'dump-utmp', 'cache_dump', 'setregdomain', 'atrun', 'postqueue', 'groupmod', 'lgroupdel', 'lpmove', 'yptest', 'xfs_bmap', 'thin_restore', 'xfs_io', 'ck-log-system-restart', 'system-config-network-tui', 'wpa_cli', 'abrt-install-ccpp-hook', 'pdata_tools', 'matchpathcon', 'virt-what', 'postsuper', 'filefrag', 'postmap', 'brctl', 'update-pciids', 'thin_trim', 'ldattach', 'certmonger', 'htcacheclean', 'foomatic-getpjloptions', 'thin_repair', 'sestatus', 'applygnupgdefaults', 'ipa-client-install', 'xfs_mdrestore', 'pppstats', 'pm-powersave', 'ss', 'system-config-network', 'useradd', 'xfs_mkfile', 'mcelog', 'newusers', 'foomatic-replaceoldprinterids', 'zic', 'hciconfig', 'ipset', 'packagekitd', 'lpinfo', 'pbs_mom', 'foomatic-kitload', 'cupsctl', 'efibootmgr', 'cups-genppdupdate', 'sa', 'suexec', 'uuserver', 'tcpdmatch', 'qserverd', 'foomatic-nonumericalids', 'addgnupghome', 'restorecond', 'httxt2dbm', 'xfs_admin', 'xfs_ncheck', 'plymouth-set-default-theme', 'groupmems', 'crond', 'warnquota', 'getpcaps', 'iconvconfig', 'bluetoothd', 'ntpdc', 'luseradd', 'ntpq', 'pppoe-server', 'postfix', 'ntpd', 'rpc.ypxfrd', 'tmpwatch', 'qschedd', 'cracklib-packer', 'nstat', 'pluginviewer', 'dump-acct', 'rpc.rquotad', 'sss_cache', 'pppd', 'luserdel', 'pbs_sched', 'ntpdate', 'mkdict', 'dmidecode', 'cupsd', 'irqbalance', 'bonobo-activation-sysconf', 'logrotate', 'create-cracklib-dict', 'xfs_quota', 'cracklib-format', 'rpc.idmapd', 'thin_metadata_size', 'selinuxdefcon', 'lpadmin', 'rpc.mountd', 'rpc.yppasswdd', 'skdump', 'console-kit-daemon', 'sosreport', 'userdel', 'via_regs_dump', 'try-from', 'saslauthd', 'sserver', 'hciattach', 'prelink', 'avahi-autoipd', 'cupsenable', 'pwck', 'cpuspeed', 'abrt-auto-reporting', 'automount', 'lgroupmod', 'yppush', 'arpd', 'lnewusers', 'usernetctl', 'repquota', 'NetworkManager', 'zdump', 'pethtool', 'semodule', 'cups-genppd.5.2', 'rpc.gssd', 'xfs_growfs', 'ipa-join', 'setcap', 'glibc_post_upgrade.x86_64', 'xfs_check', 'lgroupadd', 'makewhatis', 'makedumpfile', 'era_restore', 'grpconv', 'rtkitctl', 'groupdel', 'ledctl', 'crda', 'selinuxconlist', 'ypset', 'sshd', 'sendmail.postfix', 'redhat_lsb_trigger.x86_64', 'ledmon', 'authconfig-tui', 'yppoll', 'pppoe-start', 'regdbdump', 'cifs.upcall', 'tickadj', 'ypbind', 'pbs_server', 'gss-server', 'sm-notify', 'rpc.svcgssd', 'postdrop', 'start-statd', 'groupadd', 'togglesebool', 'postcat', 'accept', 'wpa_supplicant', 'httpd', 'quota_nld', 'pifconfig', 'lshw', 'ethtool', 'lokkit', 'pppoe-status', 'system-config-authentication', 'getenforce', 'iconvconfig.x86_64', 'dnsmasq', 'oddjobd', 'capsh', 'abrt-dbus', 'chronyd', 'rtacct', 'firstboot', 'adcli', 'cracklib-unpacker', 'adduser', 'alternatives', 'lsof', 'momctl', 'update-alternatives', 'userhelper', 'iotop', 'pppdump', 'tzdata-update', 'cupsaccept', 'serviceconf', 'pppoe-sniff', 'latencytop-tui', 'lpasswd', 'quotastats', '.sshd.hmac', 'krb5-send-pr', 'sssd', 'rtcwake', 'pppoe-connect', 'foomatic-fix-xml', 'pppoe', 'pbs_demux', 'nfsiostat', 'ipa-client-automount', 'rpc.nfsd', 'ipa-rmkeytab', 'cifs.idmap', 'vipw', 'yumdb', 'xfs_estimate', 'mountstats', 'anacron', 'xfs_freeze', 'grpck', 'netscsid', 'thin_ls', 'powertop', 'cracklib-check', 'fdformat', 'authconfig', 'era_invalidate', 'lockdev', 'xfs_copy', 'alsa-delay', 'vigr', 'packer', 'sendmail', 'cache_repair', 'clockdiff', 'usermod', 'cacertdir_rehash', 'lid', 'postconf', 'smtp-sink', 'chpasswd', 'smtp-source', 'saslpasswd2', 'vpddecode', 'setup', 'bccmd', 'ck-log-system-stop', 'lchage', 'ownership', 'mksock', 'postalias', 'abrt-server', 'ypserv', 'gdm', 'ck-log-system-start', 'accton', 'rpcinfo', 'foomatic-preferred-driver', 'avcstat', 'arping', 'hald', 'e2freefrag', 'edquota', 'xfs_info', 'open_init_pty', 'xfs_fsr', 'convertquota', 'xfs_metadump', 'winbindd', 'getcap', 'tunelp', 'cupsfilter', 'build-locale-archive', 'testsaslauthd', 'genhomedircon', 'mtr', 'yum-complete-transaction', 'ntptime', 'safe_finger', 'ypserv_test', 'cupsdisable', 'chroot', 'eject', 'exportfs', 'modem-manager', 'cache_check', 'tcpslice', 'setsebool', 'thin_rmap', 'smartd', 'mklost+found', 'system-config-services', 'xfs_logprint', 'thin_check', 'run_init', 'ping6', 'sys-unconfig', 'update-smart-drivedb', 'alsactl', 'postmulti', 'usbmuxd', 'cache_metadata_size', 'visudo', 'pwunconv', 'authconfig-gtk', 'trqauthd', 'hwclock', 'system-config-network-cmd', 'wpa_passphrase', 'lpc.cups'] ['sln', 'setpci', 'arp', 'load_policy', 'lvm', 'xfs_repair', 'mdmon', 'dracut', 'blockdev', 'rfkill', 'auditd', 'dhclient', 'readahead', 'quotaoff', 'blkdiscard', 'cache_restore', 'lvmconf', 'fsck.ext3', 'fsck.ext4dev', 'MAKEDEV', 'telinit', 'nfs_cache_getent', 'insmod.static', 'lvremove', 'runuser', 'era_check', 'initctl', 'badblocks', 'depmod', 'pppoe-stop', 'restart', 'parted', 'swapon', 'getkey', 'pppoe-relay', 'grubby', 'debugfs', 'dmraid.static', 'ip6tables', 'installkernel', 'ip6tables-multi-1.4.7', 'partx', 'pppoe-setup', 'thin_dump', 'iptables-multi', 'ip6tables-save', 'wipefs', 'era_dump', 'mkswap', 'vgmknodes', 'fsck.ext4', 'rngd', 'weak-modules', 'thin_delta', 'partprobe', 'agetty', 'plymouthd', 'grub-terminfo', 'dmstats', 'mkfs.ext2', 'cache_dump', 'busybox', 'netreport', 'ldconfig', 'pvdisplay', 'sulogin', 'e2image', 'thin_restore', 'setsysfont', 'pam_tally2', 'reboot', 'quotacheck', 'cgrulesengd', 'rmmod', 'restorecon', 'fsck.msdos', 'pdata_tools', 'matchpathcon', 'vgrename', 'pvscan', 'resize2fs', 'switch_root', 'dmraid', 'thin_trim', 'ip6tables-multi', 'iptables-1.4.7', 'vconfig', 'thin_repair', 'pvck', 'dmevent_tool', 'vgconvert', 'umount.hal', 'readahead-collector', 'ipmaddr', 'vgdisplay', 'lvscan', 'e2fsck', 'killall5', 'poweroff', 'setfiles', 'modinfo', 'route', 'unix_chkpwd', 'tune2fs', 'iwlist', 'genhostid', 'mount.nfs', 'mount.tmpfs', 'vgck', 'fsfreeze', 'pvs', 'mkdumprd', 'start_udev', 'fsck.cramfs', 'unix_update', 'ifdown', 'ifcfg', 'iw', 'lvchange', 'nologin', 'hdparm', 'mkfs.xfs', 'cbq', 'chcpu', 'consoletype', 'blkdeactivate', 'pppoe-server', 'fixfiles', 'ip', 'mount.cifs', 'lvmsadc', 'lvmconfig', 'vgmerge', 'reload', 'ifup', 'lvreduce', 'grub-install', 'lvs', 'faillock', 'iptables-restore', 'umount.udisks', 'rdisc', 'pam_console_apply', 'mii-tool', 'lspcmcia', 'kdump', 'slattach', 'iptables-restore-1.4.7', 'ppp-watch', 'swapoff', 'thin_metadata_size', 'mkfs.cramfs', 'vgcfgbackup', 'grub', 'auditctl', 'nameif', 'lvcreate', 'augenrules', 'vgscan', 'ether-wake', 'lvmsar', 'stop', 'cgconfigparser', 'new-kernel-pkg', 'lvresize', 'bridge', 'delpart', 'mkinitrd', 'ip6tables-restore', 'mount.fuse', 'start', 'vgreduce', 'grub-md5-crypt', 'addpart', 'pvresize', 'iwpriv', 'ausearch', 'vgs', 'lvconvert', 'runlevel', 'era_restore', 'iwconfig', 'scsi_id', 'pidof', 'pppoe-start', 'request-key', 'mkdosfs', 'rpc.statd', 'sysctl', 'plipconfig', 'init', 'insmod', 'vgchange', 'modprobe', 'halt', 'lvmdiskscan', 'chkconfig', 'fstrim', 'ethtool', 'lvrename', 'pppoe-status', 'iwgetid', 'vgsplit', 'vgimport', 'umount.nfs4', 'ip6tables-restore-1.4.7', 'vgcfgrestore', 'lspci', 'install-info', 'iptables-save', 'udevadm', 'shutdown', 'fsck', 'cryptsetup', 'pppoe-sniff', 'dmsetup', 'vgexport', 'securetty', 'sfdisk', 'pppoe-connect', 'cgclear', 'pppoe', 'iptables', 'quotaon', 'iptables-multi-1.4.7', 'umount.nfs', 'ifenslave', 'cfdisk', 'mkfs.vfat', 'iptunnel', 'mii-diag', 'tc', 'ctrlaltdel', 'fstab-decode', 'mkfs', 'blkid', 'portreserve', 'ifrename', 'thin_ls', 'lsinitrd', 'biosdevname', 'audispd', 'pvremove', 'era_invalidate', 'e2undo', 'iwspy', 'mount.nfs4', 'pccardctl', 'lvdisplay', 'lvextend', 'cache_repair', 'rsyslogd', 'mkfs.msdos', 'vgcreate', 'vgextend', 'pvchange', 'lvmetad', 'rpcbind', 'logsave', 'fsadm', 'dm_dso_reg_tool', 'fdisk', 'fuser', 'lvmdump', 'pivot_root', 'clock', 'accton', 'ip6tables-1.4.7', 'dosfslabel', 'arping', 'e2label', 'lsmod', 'grub-crypt', 'lvmchange', 'autrace', 'portrelease', 'sushell', 'ifconfig', 'dumpe2fs', 'dosfsck', 'vmcore-dmesg', 'iwevent', 'findfs', 'pvcreate', 'fsck.ext2', 'vgimportclone', 'udevd', 'service', 'status', 'microcode_ctl', 'pam_timestamp_check', 'kexec', 'mingetty', 'pvmove', 'mkhomedir_helper', 'fsck.vfat', 'mkfs.ext4dev', 'cache_check', 'dhclient-script', 'thin_rmap', 'mdadm', 'mkfs.ext3', 'thin_check', 'kpartx', 'sgpio', 'ip6tables-save-1.4.7', 'alsactl', 'vgremove', 'mke2fs', 'losetup', 'cache_metadata_size', 'mkfs.ext4', 'hwclock', 'iptables-save-1.4.7', 'fsck.xfs', 'aureport', 'dmeventd', 'rtmon'] ['opal_wrapper', 'orte-clean', 'orted', 'orterun', 'ortecc', 'orte-info', 'orte-server', 'mpirun', 'mpiexec', 'ompi-clean', 'ompi-server', 'profile2mat.pl', 'aggregate_profile.pl', 'ompi_info', 'mpicc', 'mpic++', 'mpicxx', 'mpifort', 'mpif77', 'mpif90', 'mpiCC'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /home/ivanluthfi1/petsc-3.13.6/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: [Errno 2] No such file or directory: '/Developer/NVIDIA/CUDA-6.5/bin' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /home/ivanluthfi1/petsc-3.13.6/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/local/cuda/bin gives errors: [Errno 2] No such file or directory: '/usr/local/cuda/bin' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:750) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:750) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:849) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:849) Locate a functional Cxx compiler Checking for program /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx...found Defined make macro "CXX" to "/home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o Testing executable /tmp/petsc-w22h8k_x/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-w22h8k_x/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-w22h8k_x/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx --version stdout: g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:890) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:890) Locate a functional Cxx preprocessor Checking for program /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx...found Defined make macro "CXXPP" to "/home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -E -I/tmp/petsc-w22h8k_x/config.setCompilers /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:991) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:991) Locate a functional Fortran compiler ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1181) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1181) ================================================================================ TEST checkArchiver from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1280) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1280) Check that the archiver exists and can make a library usable by the compiler Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.48.el6_10.1 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.48.el6_10.1 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/lib64/qt-3.3/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/lib64/qt-3.3/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-w22h8k_x/config.setCompilers/libconf1.a /tmp/petsc-w22h8k_x/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib -c /tmp/petsc-w22h8k_x/config.setCompilers/libconf1.a Possible ERROR while running ranlib: exit code 1 stderr: /usr/bin/ranlib: '-c': No such file Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.48.el6_10.1 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.48.el6_10.1 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/lib64/qt-3.3/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/lib64/qt-3.3/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-w22h8k_x/config.setCompilers/libconf1.a /tmp/petsc-w22h8k_x/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib /tmp/petsc-w22h8k_x/config.setCompilers/libconf1.a Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -L/tmp/petsc-w22h8k_x/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1395) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1395) Check that the linker can produce shared libraries Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking shared linker /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc using flags ['-shared'] Checking for program /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc...found Defined make macro "LD_SHARED" to "/home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc" Trying C compiler flag Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest -shared /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.setCompilers/libconftest.so -shared /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o: could not read symbols: Bad value collect2: ld returned 1 exit status Rejected C compiler flag because it was not compatible with shared linker /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc using flags ['-shared'] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries Trying C compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest -shared -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -L/tmp/petsc-w22h8k_x/config.setCompilers -lconftest Using shared linker /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc with flags ['-shared'] and library extension so Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1128) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1128) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o: could not read symbols: Bad value collect2: ld returned 1 exit status Rejected Cxx compiler flag because shared linker cannot handle it Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries Trying Cxx compiler flag -fPIC for PIC code Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o Accepted Cxx compiler flag -fPIC for PIC code ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1507) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1507) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -V Trying C linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest -Wl,-rpath,/home/ivanluthfi1/petsc-3.13.6 -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/home/ivanluthfi1/petsc-3.13.6 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -V Trying Cxx linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest -Wl,-rpath,/home/ivanluthfi1/petsc-3.13.6 /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/home/ivanluthfi1/petsc-3.13.6 ================================================================================ TEST checkLibC from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1542) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1542) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1588) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1588) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-w22h8k_x/config.headers Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] All intermediate test results are stored in /tmp/petsc-w22h8k_x/config.libraries Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.libraries -fPIC /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC /tmp/petsc-w22h8k_x/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking dynamic linker /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc using flags ['-shared'] Checking for program /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest -shared -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -ldl Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/tmp/petsc-w22h8k_x/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -ldl Using dynamic linker /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1637) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1637) Output module data as defines and substitutions Substituting "CC" with "/home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "/home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "" Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 2.124032 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/sharedLibraries.py:36) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:36) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/sharedLibraries.py:52) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:52) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -v Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/sharedLibraries.py:97) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:97) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/sharedLibraries.py:103) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:103) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries child PETSc.options.sharedLibraries 0.021504 ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/indexTypes.py:39) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.002811 ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/compilerFlags.py:72) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:72) Get the default compiler flags Defined make macro "C_VERSION" to "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)" Defined make macro "MPICC_SHOW" to "gcc -I/home/ivanluthfi1/openmpi/opt-4.1.1/include -pthread -Wl,-rpath -Wl,/home/ivanluthfi1/openmpi/opt-4.1.1/lib -Wl,--enable-new-dtags -L/home/ivanluthfi1/openmpi/opt-4.1.1/lib -lmpi" Trying C compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC -Wall /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC -Wall -Wwrite-strings /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fstack-protector Trying C compiler flag -mfp16-format=ieee Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -mfp16-format=ieee /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: cc1: error: unrecognized command line option "-mfp16-format=ieee" Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to cc1: error: unrecognized command line option "-mfp16-format=ieee" PETSc Error: No output file produced Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Defined make macro "MPICC_SHOW" to "gcc -I/home/ivanluthfi1/openmpi/opt-4.1.1/include -pthread -Wl,-rpath -Wl,/home/ivanluthfi1/openmpi/opt-4.1.1/lib -Wl,--enable-new-dtags -L/home/ivanluthfi1/openmpi/opt-4.1.1/lib -lmpi" Trying C compiler flag -g3 Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g3 Defined make macro "Cxx_VERSION" to "g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)" Defined make macro "MPICXX_SHOW" to "g++ -I/home/ivanluthfi1/openmpi/opt-4.1.1/include -pthread -Wl,-rpath -Wl,/home/ivanluthfi1/openmpi/opt-4.1.1/lib -Wl,--enable-new-dtags -L/home/ivanluthfi1/openmpi/opt-4.1.1/lib -lmpi" Trying Cxx compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -Wall -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -Wall -Wwrite-strings -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fvisibility=hidden Defined make macro "MPICXX_SHOW" to "g++ -I/home/ivanluthfi1/openmpi/opt-4.1.1/include -pthread -Wl,-rpath -Wl,/home/ivanluthfi1/openmpi/opt-4.1.1/lib -Wl,--enable-new-dtags -L/home/ivanluthfi1/openmpi/opt-4.1.1/lib -lmpi" Trying Cxx compiler flag -g Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g child config.compilerFlags 0.672137 Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries ================================================================================ TEST checkRestrict from config.compilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/compilers.py:150) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:150) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -V All intermediate test results are stored in /tmp/petsc-w22h8k_x/config.compilers Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.compilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.compilers/conftest.c:5: warning: unused variable ‘x’ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ================================================================================ TEST checkCFormatting from config.compilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/compilers.py:405) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:405) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCInline from config.compilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/compilers.py:120) TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:120) Check for C inline keyword Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.compilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/compilers.py:416) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:416) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.compilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/compilers.py:214) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:214) Determines the libraries needed to link with C compiled code Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.compilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.compilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC /tmp/petsc-w22h8k_x/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -o /tmp/petsc-w22h8k_x/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g /tmp/petsc-w22h8k_x/config.compilers/conftest.o /tmp/petsc-w22h8k_x/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/compilers.py:1363) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1363) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 -MMD -MP /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC -MMD -MP /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ================================================================================ TEST checkC99Flag from config.compilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/compilers.py:1408) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1408) Check for -std=c99 or equivalent flag Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c:11: error: ‘for’ loop initial declarations are only allowed in C99 mode /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c:11: note: use option -std=c99 or -std=gnu99 to compile your code Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c:11: error: ‘for’ loop initial declarations are only allowed in C99 mode /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c:11: note: use option -std=c99 or -std=gnu99 to compile your code PETSc Error: No output file produced Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 -std=c99 /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Accepted C99 compile flag: -std=c99 Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries ================================================================================ TEST checkRestrict from config.compilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/compilers.py:150) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:150) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -V Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.compilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC /tmp/petsc-w22h8k_x/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-w22h8k_x/config.compilers/conftest.cc:5: warning: unused variable ‘x’ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/compilers.py:435) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:435) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } ================================================================================ TEST checkCxxInline from config.compilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/compilers.py:135) TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:135) Check for C++ inline keyword Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.compilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC /tmp/petsc-w22h8k_x/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/compilers.py:547) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:547) Determines the libraries needed to link with C++ from C and Fortran Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.compilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC /tmp/petsc-w22h8k_x/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.compilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.compilers/conftest.o /tmp/petsc-w22h8k_x/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.compilers/confc.o: In function `asub()': /tmp/petsc-w22h8k_x/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /tmp/petsc-w22h8k_x/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /tmp/petsc-w22h8k_x/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /tmp/petsc-w22h8k_x/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /tmp/petsc-w22h8k_x/config.compilers/conftest.cc:7: undefined reference to `std::cout' /tmp/petsc-w22h8k_x/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /tmp/petsc-w22h8k_x/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-w22h8k_x/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-w22h8k_x/config.compilers/confc.o: In function `__static_initialization_and_destruction_0': /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream:72: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream:72: undefined reference to `std::ios_base::Init::~Init()' /tmp/petsc-w22h8k_x/config.compilers/confc.o: In function `__gnu_cxx::new_allocator::deallocate(int*, unsigned long)': /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h:95: undefined reference to `operator delete(void*)' /tmp/petsc-w22h8k_x/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /tmp/petsc-w22h8k_x/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' collect2: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.compilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC /tmp/petsc-w22h8k_x/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.compilers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.compilers/conftest.o /tmp/petsc-w22h8k_x/config.compilers/confc.o -lstdc++ -ldl compilers: C++ requires -lstdc++ to link with C compiler ================================================================================ TEST checkCxxDialect from config.compilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/compilers.py:463) TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:463) Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any]. -with-cxx-dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 with flag: Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: In file included from /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/random:35, from /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:4: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/c++0x_warning.h:31:2: error: #error This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:7: error: expected constructor, destructor, or type conversion before ‘T’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:12: error: ‘random_device’ is not a member of ‘std’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:12: error: expected ‘;’ before ‘rd’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:13: error: ‘mt19937’ is not a member of ‘std’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:13: error: expected ‘;’ before ‘mt’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:14: error: ‘normal_distribution’ is not a member of ‘std’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:14: error: expected primary-expression before ‘double’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:14: error: expected ‘;’ before ‘double’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:15: error: ‘mt’ was not declared in this scope /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:15: error: ‘dist’ was not declared in this scope /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:18: error: ‘constexpr’ was not declared in this scope /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:18: error: expected ‘;’ before ‘std’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:19: warning: ‘auto’ will change meaning in C++0x; please remove it /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:19: error: ISO C++ forbids declaration of ‘lambda’ with no type /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:19: error: expected primary-expression before ‘[’ token /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:19: error: expected primary-expression before ‘]’ token /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:19: warning: C++0x auto only available with -std=c++0x or -std=gnu++0x /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:19: error: expected primary-expression before ‘auto’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:19: warning: C++0x auto only available with -std=c++0x or -std=gnu++0x /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:19: error: expected primary-expression before ‘auto’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:19: error: expected ‘,’ or ‘;’ before ‘{’ token /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:20: error: ‘lambda’ cannot be used as a function Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/random:35, from /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:4: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/c++0x_warning.h:31:2: error: #error This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:7: error: expected constructor, destructor, or type conversion before ‘T’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:12: error: ‘random_device’ is not a member of ‘std’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:12: error: expected ‘;’ before ‘rd’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:13: error: ‘mt19937’ is not a member of ‘std’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:13: error: expected ‘;’ before ‘mt’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:14: error: ‘normal_distribution’ is not a member of ‘std’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:14: error: expected primary-expression before ‘double’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:14: error: expected ‘;’ before ‘double’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:15: error: ‘mt’ was not declared in this scope /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:15: error: ‘dist’ was not declared in this scope /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:18: error: ‘constexpr’ was not declared in this scope /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:18: error: expected ‘;’ before ‘std’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:19: warning: ‘auto’ will change meaning in C++0x; please remove it /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:19: error: ISO C++ forbids declaration of ‘lambda’ with no type /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:19: error: expected primary-expression before ‘[’ token /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:19: error: expected primary-expression before ‘]’ token /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:19: warning: C++0x auto only available with -std=c++0x or -std=gnu++0x /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:19: error: expected primary-expression before ‘auto’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:19: warning: C++0x auto only available with -std=c++0x or -std=gnu++0x /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:19: error: expected primary-expression before ‘auto’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:19: error: expected ‘,’ or ‘;’ before ‘{’ token /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:20: error: ‘lambda’ cannot be used as a function PETSc Error: No output file produced checkCxxDialect: checking CXX14 with flag: -std=gnu++14 Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -std=gnu++14 -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: cc1plus: error: unrecognized command line option "-std=gnu++14" Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } Rejecting compiler flag -std=gnu++14 due to nonzero status from link Rejecting compiler flag -std=gnu++14 due to cc1plus: error: unrecognized command line option "-std=gnu++14" PETSc Error: No output file produced checkCxxDialect: checking CXX11 with flag: Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: In file included from /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/random:35, from /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:4: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/c++0x_warning.h:31:2: error: #error This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:7: error: expected constructor, destructor, or type conversion before ‘T’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:12: error: ‘random_device’ is not a member of ‘std’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:12: error: expected ‘;’ before ‘rd’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:13: error: ‘mt19937’ is not a member of ‘std’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:13: error: expected ‘;’ before ‘mt’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:14: error: ‘normal_distribution’ is not a member of ‘std’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:14: error: expected primary-expression before ‘double’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:14: error: expected ‘;’ before ‘double’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:15: error: ‘mt’ was not declared in this scope /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:15: error: ‘dist’ was not declared in this scope Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/random:35, from /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:4: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/c++0x_warning.h:31:2: error: #error This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:7: error: expected constructor, destructor, or type conversion before ‘T’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:12: error: ‘random_device’ is not a member of ‘std’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:12: error: expected ‘;’ before ‘rd’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:13: error: ‘mt19937’ is not a member of ‘std’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:13: error: expected ‘;’ before ‘mt’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:14: error: ‘normal_distribution’ is not a member of ‘std’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:14: error: expected primary-expression before ‘double’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:14: error: expected ‘;’ before ‘double’ /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:15: error: ‘mt’ was not declared in this scope /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc:15: error: ‘dist’ was not declared in this scope PETSc Error: No output file produced checkCxxDialect: checking CXX11 with flag: -std=gnu++11 Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.setCompilers/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -std=gnu++11 -fPIC /tmp/petsc-w22h8k_x/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: cc1plus: error: unrecognized command line option "-std=gnu++11" Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; ; return 0; } Rejecting compiler flag -std=gnu++11 due to nonzero status from link Rejecting compiler flag -std=gnu++11 due to cc1plus: error: unrecognized command line option "-std=gnu++11" PETSc Error: No output file produced Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -V ================================================================================ TEST setupFrameworkCompilers from config.compilers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/compilers.py:1473) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1473) child config.compilers 1.414003 ================================================================================ TEST configureClosure from config.utilities.closure(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/utilities/closure.py:17) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C All intermediate test results are stored in /tmp/petsc-w22h8k_x/config.utilities.closure Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.closure/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.utilities.closure/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.utilities.closure/conftest.c:6: error: expected identifier or ‘(’ before ‘^’ token Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link child config.utilities.closure 0.033500 child config.compilersFortran 0.000072 ================================================================================ TEST checkStdC from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.headers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.headers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.headers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.headers/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-w22h8k_x/config.headers/conftest to see if it can be run Executing: /tmp/petsc-w22h8k_x/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-w22h8k_x/config.headers/conftest ================================================================================ TEST checkStat from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c ================================================================================ TEST checkSysWait from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.headers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ================================================================================ TEST checkMath from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:201) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.headers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:17: error: dos.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:17: error: dos.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:17: error: dos.h: No such file or directory: ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:16: error: io.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:16: error: io.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:16: error: io.h: No such file or directory: ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:28: error: machine/endian.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:28: error: machine/endian.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:28: error: machine/endian.h: No such file or directory: ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:28: error: sys/systeminfo.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:28: error: sys/systeminfo.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:28: error: sys/systeminfo.h: No such file or directory: ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:20: error: direct.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:20: error: direct.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:20: error: direct.h: No such file or directory: ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:22: error: Ws2tcpip.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:22: error: Ws2tcpip.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:22: error: Ws2tcpip.h: No such file or directory: ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:22: error: WindowsX.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:22: error: WindowsX.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:22: error: WindowsX.h: No such file or directory: ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:20: error: ieeefp.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:20: error: ieeefp.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:20: error: ieeefp.h: No such file or directory: ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:23: error: zmmintrin.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:23: error: zmmintrin.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:23: error: zmmintrin.h: No such file or directory: ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:17: error: dos.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:17: error: dos.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:17: error: dos.h: No such file or directory: ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:16: error: io.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:16: error: io.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:16: error: io.h: No such file or directory: ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:28: error: machine/endian.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:28: error: machine/endian.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:28: error: machine/endian.h: No such file or directory: ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:28: error: sys/systeminfo.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:28: error: sys/systeminfo.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:28: error: sys/systeminfo.h: No such file or directory: ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:20: error: direct.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:20: error: direct.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:20: error: direct.h: No such file or directory: ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:22: error: Ws2tcpip.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:22: error: Ws2tcpip.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:22: error: Ws2tcpip.h: No such file or directory: ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:22: error: WindowsX.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:22: error: WindowsX.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:22: error: WindowsX.h: No such file or directory: ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:20: error: ieeefp.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:20: error: ieeefp.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:20: error: ieeefp.h: No such file or directory: ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ================================================================================ TEST check from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:23: error: zmmintrin.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:23: error: zmmintrin.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:23: error: zmmintrin.h: No such file or directory: ================================================================================ TEST checkRecursiveMacros from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:216) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.headers/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 1.958201 ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. All intermediate test results are stored in /tmp/petsc-w22h8k_x/config.utilities.cacheDetails Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.cacheDetails/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-w22h8k_x/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-w22h8k_x/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-w22h8k_x/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "64" child config.utilities.cacheDetails 0.155825 ================================================================================ TEST check_struct_sigaction from config.types(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/types.py:43) TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:43) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction All intermediate test results are stored in /tmp/petsc-w22h8k_x/config.types Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.types/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.types/conftest.c:11: warning: unused variable ‘a’ Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ================================================================================ TEST check__int64 from config.types(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/types.py:49) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:49) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.types/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.types/conftest.c:11: error: ‘__int64’ undeclared (first use in this function) /tmp/petsc-w22h8k_x/config.types/conftest.c:11: error: (Each undeclared identifier is reported only once /tmp/petsc-w22h8k_x/config.types/conftest.c:11: error: for each function it appears in.) /tmp/petsc-w22h8k_x/config.types/conftest.c:11: error: expected ‘;’ before ‘a’ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/types.py:55) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:55) Checks for types associated with sizes, such as size_t. Checking for type: size_t Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.types/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.types/conftest.c:11: warning: unused variable ‘a’ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/types.py:65) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:65) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.types/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.types/conftest.c:11: warning: unused variable ‘a’ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.types/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.types/conftest.c:11: warning: unused variable ‘a’ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/types.py:60) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:60) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.types/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.types/conftest.c:11: warning: unused variable ‘a’ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/types.py:71) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:71) Checks for pid_t, and defines it if necessary Checking for type: pid_t Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.types/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.types/conftest.c:11: warning: unused variable ‘a’ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/types.py:75) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:75) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.types /tmp/petsc-w22h8k_x/config.types/conftest.c ================================================================================ TEST checkC99Complex from config.types(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/types.py:82) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:82) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/types.py:93) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:93) Check for complex numbers in namespace std Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC /tmp/petsc-w22h8k_x/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -o /tmp/petsc-w22h8k_x/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g /tmp/petsc-w22h8k_x/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ================================================================================ TEST checkConst from config.types(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/types.py:104) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:104) Checks for working const, and if not found defines it to empty string Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.types/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.types/conftest.c:30: warning: ‘t’ is used uninitialized in this function /tmp/petsc-w22h8k_x/config.types/conftest.c:46: warning: ‘b’ is used uninitialized in this function Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkSizeof from config.types(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ================================================================================ TEST checkSizeof from config.types(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkVisibility from config.types(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/types.py:194) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:194) Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.types/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC /tmp/petsc-w22h8k_x/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" child config.types 1.090996 ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/memAlign.py:29) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.001441 ================================================================================ TEST check from config.libraries(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status ================================================================================ TEST check from config.libraries(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status ================================================================================ TEST check from config.libraries(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status ================================================================================ TEST check from config.libraries(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status ================================================================================ TEST checkMath from config.libraries(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/libraries.py:264) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lstdc++ -ldl CheckMath: using math library [] ================================================================================ TEST checkMathErf from config.libraries(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/libraries.py:283) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lstdc++ -ldl erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/libraries.py:292) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lstdc++ -ldl tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathLgamma from config.libraries(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/libraries.py:301) TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lstdc++ -ldl lgamma() found Defined "HAVE_LGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/libraries.py:314) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/libraries.py:322) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.libraries/conftest.c: In function ‘_check_log2’: /tmp/petsc-w22h8k_x/config.libraries/conftest.c:5: warning: unused variable ‘y’ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lstdc++ -ldl log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkRealtime from config.libraries(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/libraries.py:331) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lstdc++ -ldl realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/libraries.py:347) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -ldl -lstdc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 1.015803 ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /tmp/petsc-w22h8k_x/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' collect2: ld returned 1 exit status Checking for functions [ADIOI_BGL_Open] in library [''] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /tmp/petsc-w22h8k_x/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' collect2: ld returned 1 exit status *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/libraryOptions.py:95) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:95) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 0.184497 child config.atomics 0.000023 ================================================================================ TEST checkSysinfo from config.functions(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/functions.py:106) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] All intermediate test results are stored in /tmp/petsc-w22h8k_x/config.functions Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SYSINFO" to "1" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.c:9:4: error: #error "Cannot check sysinfo without special headers" /tmp/petsc-w22h8k_x/config.functions/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.functions/conftest.c:13: warning: implicit declaration of function ‘sysinfo’ Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_SYS_SYSINFO_H # include #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl ================================================================================ TEST checkVFPrintf from config.functions(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/functions.py:131) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/functions.py:137) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ================================================================================ TEST checkNanosleep from config.functions(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/functions.py:167) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkMemmove from config.functions(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/functions.py:173) TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/functions.py:143) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC /tmp/petsc-w22h8k_x/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -o /tmp/petsc-w22h8k_x/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Defined "SIGNAL_CAST" to " " ================================================================================ TEST checkFreeReturnType from config.functions(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/functions.py:153) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.functions/conftest.c:6: error: void value not ignored as it ought to be Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/functions.py:159) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/functions.py:85) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [_mkdir access getrusage dlclose bzero lseek popen sbreak _sleep strcasecmp getcwd drand48 usleep stricmp socket dlsym _getcwd getpagesize dlerror getwd _pipe _snprintf readlink memalign gethostname clock realpath uname _lseek sleep rand snprintf _set_output_format fork gethostbyname getdomainname _access dlopen PXFGETARG time] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.c:17: warning: conflicting types for built-in function ‘bzero’ /tmp/petsc-w22h8k_x/config.functions/conftest.c:22: warning: conflicting types for built-in function ‘strcasecmp’ /tmp/petsc-w22h8k_x/config.functions/conftest.c:44: warning: conflicting types for built-in function ‘snprintf’ /tmp/petsc-w22h8k_x/config.functions/conftest.c:46: warning: conflicting types for built-in function ‘fork’ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); char access(); char getrusage(); char dlclose(); char bzero(); char lseek(); char popen(); char sbreak(); char _sleep(); char strcasecmp(); char getcwd(); char drand48(); char usleep(); char stricmp(); char socket(); char dlsym(); char _getcwd(); char getpagesize(); char dlerror(); char getwd(); char _pipe(); char _snprintf(); char readlink(); char memalign(); char gethostname(); char clock(); char realpath(); char uname(); char _lseek(); char sleep(); char rand(); char snprintf(); char _set_output_format(); char fork(); char gethostbyname(); char getdomainname(); char _access(); char dlopen(); char PXFGETARG(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.o: In function `main': /tmp/petsc-w22h8k_x/config.functions/conftest.c:177: warning: the `getwd' function is dangerous and should not be used. /tmp/petsc-w22h8k_x/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_mkdir' conftest.c:(.text+0x50): undefined reference to `sbreak' conftest.c:(.text+0x5a): undefined reference to `_sleep' conftest.c:(.text+0x8c): undefined reference to `stricmp' conftest.c:(.text+0xaa): undefined reference to `_getcwd' conftest.c:(.text+0xd2): undefined reference to `_pipe' conftest.c:(.text+0xdc): undefined reference to `_snprintf' conftest.c:(.text+0x122): undefined reference to `_lseek' conftest.c:(.text+0x14a): undefined reference to `_set_output_format' conftest.c:(.text+0x172): undefined reference to `_access' conftest.c:(.text+0x186): undefined reference to `PXFGETARG' collect2: ld returned 1 exit status Checking for functions [getrusage dlclose bzero popen strcasecmp drand48 usleep socket dlsym getpagesize dlerror] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.c:15: warning: conflicting types for built-in function ‘bzero’ /tmp/petsc-w22h8k_x/config.functions/conftest.c:17: warning: conflicting types for built-in function ‘strcasecmp’ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); char dlclose(); char bzero(); char popen(); char strcasecmp(); char drand48(); char usleep(); char socket(); char dlsym(); char getpagesize(); char dlerror(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_DLERROR" to "1" Checking for functions [readlink memalign gethostname clock realpath uname rand fork gethostbyname getdomainname dlopen time] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.c:20: warning: conflicting types for built-in function ‘fork’ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char readlink(); char memalign(); char gethostname(); char clock(); char realpath(); char uname(); char rand(); char fork(); char gethostbyname(); char getdomainname(); char dlopen(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_READLINK" to "1" Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_RAND" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_mkdir] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.o: In function `main': /tmp/petsc-w22h8k_x/config.functions/conftest.c:24: undefined reference to `_mkdir' collect2: ld returned 1 exit status Checking for functions [access] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [lseek] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [sbreak] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.o: In function `main': /tmp/petsc-w22h8k_x/config.functions/conftest.c:24: undefined reference to `sbreak' collect2: ld returned 1 exit status Checking for functions [_sleep] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.o: In function `main': /tmp/petsc-w22h8k_x/config.functions/conftest.c:24: undefined reference to `_sleep' collect2: ld returned 1 exit status Checking for functions [getcwd] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [stricmp] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.o: In function `main': /tmp/petsc-w22h8k_x/config.functions/conftest.c:24: undefined reference to `stricmp' collect2: ld returned 1 exit status Checking for functions [_getcwd] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.o: In function `main': /tmp/petsc-w22h8k_x/config.functions/conftest.c:24: undefined reference to `_getcwd' collect2: ld returned 1 exit status Checking for functions [getwd] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.o: In function `main': /tmp/petsc-w22h8k_x/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" Checking for functions [_pipe] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.o: In function `main': /tmp/petsc-w22h8k_x/config.functions/conftest.c:24: undefined reference to `_pipe' collect2: ld returned 1 exit status Checking for functions [_snprintf] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.o: In function `main': /tmp/petsc-w22h8k_x/config.functions/conftest.c:24: undefined reference to `_snprintf' collect2: ld returned 1 exit status Checking for functions [_lseek] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.o: In function `main': /tmp/petsc-w22h8k_x/config.functions/conftest.c:24: undefined reference to `_lseek' collect2: ld returned 1 exit status Checking for functions [sleep] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [snprintf] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.c:13: warning: conflicting types for built-in function ‘snprintf’ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_set_output_format] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.o: In function `main': /tmp/petsc-w22h8k_x/config.functions/conftest.c:24: undefined reference to `_set_output_format' collect2: ld returned 1 exit status Checking for functions [_access] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.o: In function `main': /tmp/petsc-w22h8k_x/config.functions/conftest.c:24: undefined reference to `_access' collect2: ld returned 1 exit status Checking for functions [PXFGETARG] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.functions/conftest.o: In function `main': /tmp/petsc-w22h8k_x/config.functions/conftest.c:24: undefined reference to `PXFGETARG' collect2: ld returned 1 exit status ================================================================================ TEST checkMmap from config.functions(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/functions.py:179) TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.functions/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 2.736171 ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() child config.utilities.getResidentSetSize 0.001966 child config.utilities.fortranCommandLine 0.000031 ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/petsc-w22h8k_x/config.utilities.featureTestMacros Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.utilities.featureTestMacros/conftest.c:4:20: error: sysctl.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 0.155018 ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/utilities/missing.py:55) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined All intermediate test results are stored in /tmp/petsc-w22h8k_x/config.utilities.missing Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c:6: warning: unused variable ‘foo’ Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/utilities/missing.py:61) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/utilities/missing.py:79) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/utilities/missing.py:96) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -lstdc++ -ldl ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/utilities/missing.py:121) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -o /tmp/petsc-w22h8k_x/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g /tmp/petsc-w22h8k_x/config.utilities.missing/conftest.o -lstdc++ -ldl child config.utilities.missing 1.268721 ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:20: error: sigfpe.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:20: error: sigfpe.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:20: error: sigfpe.h: No such file or directory: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:19: error: fpxcp.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:19: error: fpxcp.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:19: error: fpxcp.h: No such file or directory: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" # 1 "/tmp/petsc-w22h8k_x/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 # 1 "/tmp/petsc-w22h8k_x/config.headers/conffix.h" 1 # 3 "/tmp/petsc-w22h8k_x/config.headers/conftest.c" 2 stderr: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:27: error: floatingpoint.h: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:27: error: floatingpoint.h: No such file or directory : Preprocess stderr after filtering: /tmp/petsc-w22h8k_x/config.headers/conftest.c:3:27: error: floatingpoint.h: No such file or directory: child config.utilities.FPTrap 0.063784 ================================================================================ TEST configureScalarType from PETSc.options.scalarTypes(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/scalarTypes.py:40) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real All intermediate test results are stored in /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes/conftest.c:6: warning: unused variable ‘a’ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNORMAL" to "1" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes/conftest.c:6: warning: unused variable ‘a’ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNAN" to "1" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes/conftest.c:6: warning: unused variable ‘a’ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISINF" to "1" ================================================================================ TEST configurePrecision from PETSc.options.scalarTypes(/home/ivanluthfi1/petsc-3.13.6/config/PETSc/options/scalarTypes.py:81) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.libraries/conftest.c:4:22: error: quadmath.h: No such file or directory /tmp/petsc-w22h8k_x/config.libraries/conftest.c: In function ‘_check_logq’: /tmp/petsc-w22h8k_x/config.libraries/conftest.c:5: warning: implicit declaration of function ‘logq’ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 0.330623 ================================================================================ TEST configureMkdir from config.programs(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/lib64/qt-3.3/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /bin/mkdir...found Running Executable WITHOUT threads to time it out Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /usr/lib64/qt-3.3/bin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /bin/autoreconf...not found Checking for program /usr/bin/autoreconf...found All intermediate test results are stored in /tmp/petsc-w22h8k_x/config.programs Running Executable WITHOUT threads to time it out Executing: ['/usr/bin/autoreconf'] autoreconf test successful! Checking for program /usr/lib64/qt-3.3/bin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /bin/libtoolize...not found Checking for program /usr/bin/libtoolize...found ================================================================================ TEST configurePrograms from config.programs(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/programs.py:71) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /usr/lib64/qt-3.3/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /usr/lib64/qt-3.3/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" Running Executable WITHOUT threads to time it out Executing: /bin/sed -i s/sed/sd/g "/tmp/petsc-w22h8k_x/config.programs/sed1" Adding SEDINPLACE cmd: /bin/sed -i Defined make macro "SEDINPLACE" to "/bin/sed -i" Checking for program /usr/lib64/qt-3.3/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /usr/lib64/qt-3.3/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /usr/lib64/qt-3.3/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /usr/lib64/qt-3.3/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /usr/lib64/qt-3.3/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /bin/diff...not found Checking for program /usr/bin/diff...found Running Executable WITHOUT threads to time it out Executing: "/usr/bin/diff" -w "/tmp/petsc-w22h8k_x/config.programs/diff1" "/tmp/petsc-w22h8k_x/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/ivanluthfi1/petsc-3.13.6/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/ucb gives errors: [Errno 2] No such file or directory: '/usr/ucb' Warning accessing /usr/usb gives errors: [Errno 2] No such file or directory: '/usr/usb' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Defined make macro "PYTHON" to "/usr/bin/python3" Checking for program /usr/lib64/qt-3.3/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 1.826923 ================================================================================ TEST checkDependencies from config.packages.make(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.make(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.make(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.make(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional make Looking for MAKE at git.make, hg.make or a directory starting with ['make'] Found a copy of MAKE in make-4.2.1-6.fc28 Makefile /home/ivanluthfi1/petsc-3.13.6/arch-linux-c-debug/lib/petsc/conf/pkg.conf.make has correct checksum Do not need to rebuild MAKE Not checking for library in Download MAKE: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Download MAKE: ['/home/ivanluthfi1/petsc-3.13.6/arch-linux-c-debug/include'] ================================================================================ TEST checkInclude from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/ivanluthfi1/petsc-3.13.6/arch-linux-c-debug/include'] Found header files [] in ['/home/ivanluthfi1/petsc-3.13.6/arch-linux-c-debug/include'] Checking for headers [] in Download MAKE: ['/home/ivanluthfi1/petsc-3.13.6/arch-linux-c-debug/include'] ================================================================================ TEST checkVersion from config.packages.make(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.make(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version For make unable to find version information since includes and version includes are missing skipping version check ================================================================================ TEST checkSharedLibrary from config.packages.make(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.make(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared Checking for program /home/ivanluthfi1/petsc-3.13.6/arch-linux-c-debug/bin/make...found Defined make macro "MAKE" to "/home/ivanluthfi1/petsc-3.13.6/arch-linux-c-debug/bin/make" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/petsc-3.13.6/arch-linux-c-debug/bin/make --version stdout: GNU Make 4.2.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2016 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. ================================================================================ TEST setupGNUMake from config.packages.make(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/make.py:121) TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:121) Setup other GNU make stuff Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/home/ivanluthfi1/petsc-3.13.6/arch-linux-c-debug/bin/make --print-directory" Defined make macro "OMAKE" to "/home/ivanluthfi1/petsc-3.13.6/arch-linux-c-debug/bin/make --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "--output-sync=recurse" ================================================================================ TEST configureMakeNP from config.packages.make(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/make.py:168) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:168) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 8 cores: using make_np = 7 Defined make macro "MAKE_NP" to "7" Defined make macro "MAKE_TEST_NP" to "4" Defined make macro "MAKE_LOAD" to "12.0" Defined make macro "NPMAX" to "8" child config.packages.make 0.042258 ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.000953 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST alternateConfigureLibrary from config.packages.MPICH(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.005020 ================================================================================ TEST checkDependencies from config.packages.MPI(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.MPI(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/MPI.py:616) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:616) ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ================================================================================ TEST check from config.libraries(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lstdc++ -ldl Checking for optional headers [] in Compiler specific search MPI: [] ================================================================================ TEST checkInclude from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['mpi.h'] in Compiler specific search MPI: [] ================================================================================ TEST checkInclude from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.headers /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['mpi.h'] in [] ================================================================================ TEST checkMPIDistro from config.packages.MPI(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/MPI.py:477) TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:477) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time All intermediate test results are stored in /tmp/petsc-w22h8k_x/config.packages.MPI Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c:4: error: ‘I_MPI_VERSION’ undeclared here (not in a function) Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c:4: error: ‘I_MPI_NUMVERSION’ undeclared here (not in a function) Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c:4: error: ‘MVAPICH2_NUMVERSION’ undeclared here (not in a function) Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c:4: error: ‘MPICH_NUMVERSION’ undeclared here (not in a function) Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.packages.MPI /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Defined "HAVE_OMPI_MAJOR_VERSION" to "4" Defined "HAVE_OMPI_MINOR_VERSION" to "1" Defined "HAVE_OMPI_RELEASE_VERSION" to "1" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST configureMPI2 from config.packages.MPI(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/MPI.py:252) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:252) Check for functions added to the interface in MPI-2 Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c:6: warning: initialization makes pointer from integer without a cast Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c:6: warning: ‘MPI_Comm_errhandler_fn’ is deprecated Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_ONE_SIDED" to "1" ================================================================================ TEST configureMPI3 from config.packages.MPI(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/MPI.py:297) TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:297) Check for functions added to the interface in MPI-3 Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c:7:3: error: #error This OpenMPI is not CUDA-aware Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MPIX_CUDA_AWARE_SUPPORT) && MPIX_CUDA_AWARE_SUPPORT #else #error This OpenMPI is not CUDA-aware #endif int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c:6: warning: ‘win’ is used uninitialized in this function Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c:6: warning: ‘win’ is used uninitialized in this function Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_RGET" to "1" ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/MPI.py:174) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:174) Checking for location of mpiexec Checking for program /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpiexec...found Running Executable with threads to time it out at 60 Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpiexec -help all stdout: mpiexec (OpenRTE) 4.1.1 Usage: mpiexec [OPTION]... [PROGRAM]... Start the given program using Open RTE -allow-run-as-root|--allow-run-as-root Allow execution as root (STRONGLY DISCOURAGED) -am Aggregate MCA parameter set file list --app Provide an appfile; ignore all other command line options --bind-to Policy for binding processes. Allowed values: none, hwthread, core, l1cache, l2cache, l3cache, socket, numa, board, cpu-list ("none" is the default when oversubscribed, "core" is the default when np<=2, and "socket" is the default when np>2). Allowed qualifiers: overload-allowed, if-supported, ordered -bind-to-core|--bind-to-core Bind processes to cores -bind-to-socket|--bind-to-socket Bind processes to sockets -bycore|--bycore Whether to map and rank processes round-robin by core -bynode|--bynode Whether to map and rank processes round-robin by node -byslot|--byslot Whether to map and rank processes round-robin by slot -c|-np|--np Number of processes to run -cf|--cartofile Provide a cartography file -continuous|--continuous Job is to run until explicitly terminated -cpu-list|--cpu-list List of processor IDs to bind processes to [default=NULL] -cpu-set|--cpu-set Comma-separated list of ranges specifying logical cpus allocated to this job [default: none] -cpus-per-proc|--cpus-per-proc Number of cpus to use for each process [default=1] -cpus-per-rank|--cpus-per-rank Synonym for cpus-per-proc -d|-debug-devel|--debug-devel Enable debugging of OpenRTE -debug|--debug Invoke the user-level debugger indicated by the orte_base_user_debugger MCA parameter -debug-daemons|--debug-daemons Enable debugging of any OpenRTE daemons used by this application -debug-daemons-file|--debug-daemons-file Enable debugging of any OpenRTE daemons used by this application, storing output in files -debugger|--debugger Sequence of debuggers to search for when "--debug" is used -default-hostfile|--default-hostfile Provide a default hostfile -disable-recovery|--disable-recovery Disable recovery (resets all recovery options to off) -display-allocation|--display-allocation Display the allocation being used by this job -display-devel-allocation|--display-devel-allocation Display a detailed list (mostly intended for developers) of the allocation being used by this job -display-devel-map|--display-devel-map Display a detailed process map (mostly intended for developers) just before launch -display-diffable-map|--display-diffable-map Display a diffable process map (mostly intended for developers) just before launch -display-map|--display-map Display the process map just before launch -display-topo|--display-topo Display the topology as part of the process map (mostly intended for developers) just before launch -do-not-launch|--do-not-launch Perform all necessary operations to prepare to launch the application, but do not actually launch it -do-not-resolve|--do-not-resolve Do not attempt to resolve interfaces -dvm|--dvm Create a persistent distributed virtual machine (DVM) -enable-instant-on-support|--enable-instant-on-support Enable PMIx-based instant on launch support (experimental) -enable-recovery|--enable-recovery Enable recovery from process failure [Default = disabled] -fwd-mpirun-port|--fwd-mpirun-port Forward mpirun port to compute node daemons so all will use it -get-stack-traces|--get-stack-traces Get stack traces of all application procs on timeout -gmca|--gmca Pass global MCA parameters that are applicable to all contexts (arg0 is the parameter name; arg1 is the parameter value) -h|--help This help message -H|-host|--host List of hosts to invoke processes on -hnp|--hnp Specify the URI of the HNP, or the name of the file (specified as file:filename) that contains that info -hostfile|--hostfile Provide a hostfile -index-argv-by-rank|--index-argv-by-rank Uniquely index argv[0] for each process using its rank -launch-agent|--launch-agent Command used to start processes on remote nodes (default: orted) -leave-session-attached|--leave-session-attached Enable debugging of OpenRTE -machinefile|--machinefile Provide a hostfile --map-by Mapping Policy [slot | hwthread | core | socket (default) | numa | board | node] -max-restarts|--max-restarts Max number of times to restart a failed process -max-vm-size|--max-vm-size Number of processes to run -mca|--mca Pass context-specific MCA parameters; they are considered global if --gmca is not used and only one context is specified (arg0 is the parameter name; arg1 is the parameter value) -merge-stderr-to-stdout|--merge-stderr-to-stdout Merge stderr to stdout for each process -N Launch n processes per node on all allocated nodes (synonym for 'map-by node') -n|--n Number of processes to run -nolocal|--nolocal Do not run any MPI applications on the local node -nooversubscribe|--nooversubscribe Nodes are not to be oversubscribed, even if the system supports such operation --noprefix Disable automatic --prefix behavior -novm|--novm Execute without creating an allocation-spanning virtual machine (only start daemons on nodes hosting application procs) -npernode|--npernode Launch n processes per node on all allocated nodes -npersocket|--npersocket Launch n processes per socket on all allocated nodes -ompi-server|--ompi-server Specify the URI of the publish/lookup server, or the name of the file (specified as file:filename) that contains that info -output-filename|--output-filename Redirect output from application processes into filename/job/rank/std[out,err,diag]. A relative path value will be converted to an absolute path -output-proctable|--output-proctable Output the debugger proctable after launch -oversubscribe|--oversubscribe Nodes are allowed to be oversubscribed, even on a managed system, and overloading of processing elements -path|--path PATH to be used to look for executables to start processes -pernode|--pernode Launch one process per available node -personality|--personality Comma-separated list of programming model, languages, and containers being used (default="ompi") --ppr Comma-separated list of number of processes on a given resource type [default: none] --prefix Prefix where Open MPI is installed on remote nodes --preload-files Preload the comma separated list of files to the remote machines current working directory before starting the remote process. -q|--quiet Suppress helpful messages --rank-by Ranking Policy [slot (default) | hwthread | core | socket | numa | board | node] -report-bindings|--report-bindings Whether to report process bindings to stderr -report-child-jobs-separately|--report-child-jobs-separately Return the exit status of the primary job only -report-events|--report-events Report events to a tool listening at the specified URI -report-pid|--report-pid Printout pid on stdout [-], stderr [+], or a file [anything else] -report-state-on-timeout|--report-state-on-timeout Report all job and process states upon timeout -report-uri|--report-uri Printout URI on stdout [-], stderr [+], or a file [anything else] -rf|--rankfile Provide a rankfile file -s|--preload-binary Preload the binary on the remote machine before starting the remote process. -set-cwd-to-session-dir|--set-cwd-to-session-dir Set the working directory of the started processes to their session directory -show-progress|--show-progress Output a brief periodic report on launch progress -stdin|--stdin Specify procs to receive stdin [rank, all, none] (default: 0, indicating rank 0) -tag-output|--tag-output Tag all output with [job,rank] -timeout|--timeout Timeout the job after the specified number of seconds -timestamp-output|--timestamp-output Timestamp all application process output -tune Application profile options file list -tv|--tv Deprecated backwards compatibility flag; synonym for "--debug" -use-hwthread-cpus|--use-hwthread-cpus Use hardware threads as independent cpus -use-regexp|--use-regexp Use regular expressions for launch -v|--verbose Be verbose -V|--version Print version and exit -wd|--wd Synonym for --wdir -wdir|--wdir Set the working directory of the started processes -x Export an environment variable, optionally specifying a value (e.g., "-x foo" exports the environment variable foo and takes its value from the current environment; "-x foo=bar" exports the environment variable name foo and sets its value to "bar" in the started processes) -xml|--xml Provide all output in XML format -xml-file|--xml-file Provide all output in XML format to the specified file -xterm|--xterm Create a new xterm window and display output from the specified ranks there For additional mpirun arguments, run 'mpirun --help ' The following categories exist: general (Defaults to this option), debug, output, input, mapping, ranking, binding, devel (arguments useful to OMPI Developers), compatibility (arguments supported for backwards compatibility), launch (arguments to modify launch options), and dvm (Distributed Virtual Machine arguments). Report bugs to http://www.open-mpi.org/community/help/ Running Executable with threads to time it out at 60 Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpiexec --oversubscribe -n 1 printenv stdout: OMPI_MCA_rmaps_base_oversubscribe=1 OMPI_MCA_pmix=^s1,s2,cray,isolated PMIX_MCA_mca_base_component_show_load_errors=1 OMPI_COMMAND=printenv OMPI_MCA_orte_precondition_transports=51d2d2a90b751a83-a034ee0723b5724f HOSTNAME=LeoM115 SELINUX_ROLE_REQUESTED= TERM=xterm-256color SHELL=/bin/bash HISTSIZE=1000 SSH_CLIENT=220.135.137.90 56376 22 SELINUX_USE_CURRENT_RANGE= QTDIR=/usr/lib64/qt-3.3 QTINC=/usr/lib64/qt-3.3/include SSH_TTY=/dev/pts/1 USER=ivanluthfi1 LD_LIBRARY_PATH=/home/ivanluthfi1/openmpi/opt-4.1.1/lib:/home/ivanluthfi1/openmpi/opt-4.1.1/lib:/home/ivanluthfi1/openmpi/opt-4.1.1/lib LS_COLORS=rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lz=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.bz=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.rar=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45: COLUMNS=131 MAIL=/var/spool/mail/ivanluthfi1 PATH=/home/ivanluthfi1/openmpi/opt-4.1.1/bin:/home/ivanluthfi1/openmpi/opt-4.1.1/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/ivanluthfi1/openmpi/opt-4.1.1/bin PWD=/home/ivanluthfi1/petsc-3.13.6 LANG=en_US.UTF-8 SELINUX_LEVEL_REQUESTED= LINES=43 SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass HISTCONTROL=ignoredups SHLVL=2 HOME=/home/ivanluthfi1 LOGNAME=ivanluthfi1 QTLIB=/usr/lib64/qt-3.3/lib CVS_RSH=ssh SSH_CONNECTION=220.135.137.90 56376 140.115.26.14 22 LESSOPEN=||/usr/bin/lesspipe.sh %s G_BROKEN_FILENAMES=1 _=/home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpiexec IPATH_NO_BACKTRACE=1 HFI_NO_BACKTRACE=1 OMPI_MCA_orte_local_daemon_uri=455999488.0;tcp://140.115.26.14,192.168.14.254:35236 OMPI_MCA_orte_hnp_uri=455999488.0;tcp://140.115.26.14,192.168.14.254:35236 OMPI_MCA_mpi_oversubscribe=0 OMPI_MCA_orte_app_num=0 OMPI_UNIVERSE_SIZE=4 OMPI_MCA_orte_num_nodes=1 OMPI_MCA_shmem_RUNTIME_QUERY_hint=mmap OMPI_MCA_orte_bound_at_launch=1 OMPI_MCA_ess=^singleton OMPI_MCA_orte_ess_num_procs=1 OMPI_COMM_WORLD_SIZE=1 OMPI_COMM_WORLD_LOCAL_SIZE=1 OMPI_MCA_orte_tmpdir_base=/tmp OMPI_MCA_orte_top_session_dir=/tmp/ompi.LeoM115.506 OMPI_MCA_orte_jobfam_session_dir=/tmp/ompi.LeoM115.506/pid.19523 OMPI_NUM_APP_CTX=1 OMPI_FIRST_RANKS=0 OMPI_APP_CTX_NUM_PROCS=1 OMPI_MCA_initial_wdir=/home/ivanluthfi1/petsc-3.13.6 OMPI_MCA_orte_launch=1 PMIX_NAMESPACE=455999489 PMIX_RANK=0 PMIX_SERVER_URI3=455999488.0;tcp4://127.0.0.1:40795 PMIX_SERVER_URI2=455999488.0;tcp4://127.0.0.1:40795 PMIX_SERVER_URI21=455999488.0;tcp4://127.0.0.1:40795 PMIX_SECURITY_MODE=native PMIX_PTL_MODULE=tcp,usock PMIX_BFROP_BUFFER_TYPE=PMIX_BFROP_BUFFER_NON_DESC PMIX_GDS_MODULE=ds21,ds12,hash PMIX_SERVER_TMPDIR=/tmp/ompi.LeoM115.506/pid.19523 PMIX_SYSTEM_TMPDIR=/tmp PMIX_DSTORE_21_BASE_PATH=/tmp/ompi.LeoM115.506/pid.19523/pmix_dstor_ds21_19523 PMIX_DSTORE_ESH_BASE_PATH=/tmp/ompi.LeoM115.506/pid.19523/pmix_dstor_ds12_19523 PMIX_HOSTNAME=LeoM115 PMIX_VERSION=3.2.3 OMPI_MCA_ess_base_jobid=455999489 OMPI_MCA_ess_base_vpid=0 OMPI_COMM_WORLD_RANK=0 OMPI_COMM_WORLD_LOCAL_RANK=0 OMPI_COMM_WORLD_NODE_RANK=0 OMPI_MCA_orte_ess_node_rank=0 PMIX_ID=455999489.0 OMPI_FILE_LOCATION=/tmp/ompi.LeoM115.506/pid.19523/0/0 Defined "HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE" to "OMP" Defined make macro "MPIEXEC" to "/home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpiexec --oversubscribe" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-w22h8k_x/config.packages.MPI/conftest to see if it can be run Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpiexec --oversubscribe -n 1 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpiexec --oversubscribe -n 1 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest ================================================================================ TEST configureMPITypes from config.packages.MPI(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/MPI.py:344) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:344) Checking for MPI Datatype handles Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-w22h8k_x/config.packages.MPI/conftest to see if it can be run Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpiexec --oversubscribe -n 1 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpiexec --oversubscribe -n 1 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest Defined "HAVE_MPI_LONG_DOUBLE" to "1" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-w22h8k_x/config.packages.MPI/conftest to see if it can be run Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpiexec --oversubscribe -n 1 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpiexec --oversubscribe -n 1 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest Defined "HAVE_MPI_INT64_T" to "1" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-w22h8k_x/config.packages.MPI/conftest to see if it can be run Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpiexec --oversubscribe -n 1 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpiexec --oversubscribe -n 1 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" ================================================================================ TEST SGIMPICheck from config.packages.MPI(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/MPI.py:405) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:405) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': /tmp/petsc-w22h8k_x/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' collect2: ld returned 1 exit status SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/MPI.py:415) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:415) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC /tmp/petsc-w22h8k_x/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicxx -o /tmp/petsc-w22h8k_x/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lstdc++ -ldl ================================================================================ TEST FortranMPICheck from config.packages.MPI(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/MPI.py:431) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:431) Make sure fortran include [mpif.h] and library symbols are found ================================================================================ TEST configureIO from config.packages.MPI(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/MPI.py:453) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:453) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c:12: warning: ‘buf’ is used uninitialized in this function /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c:18: warning: ‘disp’ is used uninitialized in this function /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c:18: warning: ‘info’ is used uninitialized in this function Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/MPI.py:557) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:557) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS ================================================================================ TEST PetscArchMPICheck from config.packages.MPI(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/MPI.py:591) TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:591) Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.libraries/conftest.o: In function `_check_MPIX_Iallreduce': /tmp/petsc-w22h8k_x/config.libraries/conftest.c:5: undefined reference to `MPIX_Iallreduce' collect2: ld returned 1 exit status Checking for functions [MPIX_Ibarrier] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Ibarrier(); static void _check_MPIX_Ibarrier() { MPIX_Ibarrier(); } int main() { _check_MPIX_Ibarrier();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-w22h8k_x/config.libraries/conftest.o: In function `_check_MPIX_Ibarrier': /tmp/petsc-w22h8k_x/config.libraries/conftest.c:5: undefined reference to `MPIX_Ibarrier' collect2: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c:6: warning: unused variable ‘combiner’ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c:6: warning: unused variable ‘combiner’ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c:6: warning: unused variable ‘combiner’ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ================================================================================ TEST checkVersion from config.packages.MPI(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" ;petscpkgver(MPI_VERSION); Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.packages.MPI /tmp/petsc-w22h8k_x/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.MPI 3.510418 ================================================================================ TEST alternateConfigureLibrary from config.packages.zstd(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.zstd 0.001198 ================================================================================ TEST alternateConfigureLibrary from config.packages.yaml(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.000721 ================================================================================ TEST configureLibrary from config.packages.valgrind(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search VALGRIND: [] ================================================================================ TEST checkInclude from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['valgrind/valgrind.h'] in Compiler specific search VALGRIND: [] ================================================================================ TEST checkInclude from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.packages.MPI /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['valgrind/valgrind.h'] in [] All intermediate test results are stored in /tmp/petsc-w22h8k_x/config.packages.valgrind Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.packages.valgrind/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.libraries -I/tmp/petsc-w22h8k_x/config.packages.MPI -I/tmp/petsc-w22h8k_x/config.packages.valgrind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.packages.valgrind/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-w22h8k_x/config.packages.valgrind/conftest.c: In function ‘main’: /tmp/petsc-w22h8k_x/config.packages.valgrind/conftest.c:6: warning: value computed is not used Source: #include "confdefs.h" #include "conffix.h" #include int main() { RUNNING_ON_VALGRIND; ; return 0; } Defined "HAVE_VALGRIND" to "1" child config.packages.valgrind 0.067868 ================================================================================ TEST alternateConfigureLibrary from config.packages.ssl(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.001891 ================================================================================ TEST alternateConfigureLibrary from config.packages.sprng(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.001710 Not a clone of PETSc or no Fortran compiler or fortran-bindings disabled, don't need Sowing child config.packages.sowing 0.000655 ================================================================================ TEST alternateConfigureLibrary from config.packages.revolve(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.001635 ================================================================================ TEST alternateConfigureLibrary from config.packages.radau5(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.001626 ================================================================================ TEST alternateConfigureLibrary from config.packages.pami(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.001429 ================================================================================ TEST alternateConfigureLibrary from config.packages.opengles(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.001443 ================================================================================ TEST alternateConfigureLibrary from config.packages.opencl(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.001393 ================================================================================ TEST alternateConfigureLibrary from config.packages.muparser(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.001429 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpe(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.000698 ================================================================================ TEST alternateConfigureLibrary from config.packages.memkind(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.000594 ================================================================================ TEST alternateConfigureLibrary from config.packages.libmesh(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/libmesh.py:76) TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:76) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.000986 ================================================================================ TEST alternateConfigureLibrary from config.packages.moose(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.000631 ================================================================================ TEST alternateConfigureLibrary from config.packages.libjpeg(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.000736 ================================================================================ TEST alternateConfigureLibrary from config.packages.libceed(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.000686 Not a clone of PETSc, don't need Lgrind child config.packages.lgrind 0.000170 Defined "PYTHON_EXE" to ""/usr/bin/python3"" Running Executable WITHOUT threads to time it out Executing: /usr/bin/python3 -c "import Cython" Running Executable WITHOUT threads to time it out Executing: /usr/bin/python3 -c "import numpy" child config.packages.python 0.047528 ================================================================================ TEST alternateConfigureLibrary from config.packages.petsc4py(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/petsc4py.py:97) TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:97) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] child config.packages.petsc4py 0.003618 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpi4py(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/mpi4py.py:74) TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:74) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] child config.packages.mpi4py 0.002377 ================================================================================ TEST alternateConfigureLibrary from config.packages.slepc(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/slepc.py:89) TESTING: alternateConfigureLibrary from config.packages.slepc(config/BuildSystem/config/packages/slepc.py:89) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc 0.002255 ================================================================================ TEST alternateConfigureLibrary from config.packages.gmp(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.001670 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpfr(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.001668 ================================================================================ TEST alternateConfigureLibrary from config.packages.giflib(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.001653 ================================================================================ TEST alternateConfigureLibrary from config.packages.egads(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.egads(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.egads 0.001666 ================================================================================ TEST alternateConfigureLibrary from config.packages.ctetgen(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ctetgen 0.000952 ================================================================================ TEST alternateConfigureLibrary from config.packages.concurrencykit(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.000711 ================================================================================ TEST locateC2html from config.packages.c2html(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/c2html.py:33) TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:33) Looking for default C2html executable Checking for program /usr/lib64/qt-3.3/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /usr/local/sbin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /sbin/c2html...not found Checking for program /home/ivanluthfi1/openmpi/opt-4.1.1/bin/c2html...not found Checking for program /home/ivanluthfi1/petsc-3.13.6/lib/petsc/bin/win32fe/c2html...not found Unable to find programs ['c2html'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['make'] ['dbus-monitor', 'link', 'vi', 'iptables-xml-1.4.7', 'fusermount', 'mkdir', 'tracepath6', 'cp', 'nano', 'mailx', 'cgclassify', 'traceroute6', 'zcat', 'ps', 'bash', 'dbus-uuidgen', 'umount', 'login', 'chgrp', 'tracepath', 'sync', 'nice', 'alsaunmute', 'sort', 'true', 'tar', 'fgrep', 'traceroute', 'more', 'netstat', 'date', 'gettext', 'rm', 'unlink', 'kbd_mode', 'echo', 'ypdomainname', 'view', 'loadkeys', 'mknod', 'rmdir', 'dd', 'egrep', 'mktemp', 'dash', 'kill', 'tcsh', 'mountpoint', 'dmesg', 'setfont', 'gtar', 'chown', 'unicode_stop', 'cgsnapshot', 'cgexec', 'gzip', 'sed', 'cgcreate', 'csh', 'lssubsys', 'cpio', 'pwd', 'lsblk', 'mv', 'dnsdomainname', 'env', 'plymouth', 'gawk', 'mail', 'unicode_start', 'cat', 'uname', 'dumpkeys', 'ksh', 'rnano', 'logger', 'dbus-daemon', 'stty', 'rvi', 'hostname', 'sleep', 'taskset', 'usleep', 'ed', 'keyctl', 'setserial', 'chmod', 'ping', 'cgset', 'iptables-xml', 'dbus-cleanup-sockets', 'gunzip', 'su', 'grep', 'mount', 'redhat_lsb_init', 'sh', 'ipcalc', 'cut', 'arch', 'lscgroup', 'ln', 'touch', 'dbus-run-session', 'find', 'nisdomainname', 'raw', 'basename', 'cgdelete', 'rview', 'df', 'ex', 'ulockmgr_server', 'ls', 'domainname', 'findmnt', 'ksh93', 'cgget', 'red', 'false', 'ping6', 'rpm', 'awk', 'readlink', 'dbus-send'] ['rhythmbox', 'packagekit-bugreport.sh', 'xkbcomp', 'hwloc-gather-topology', 'ocount', 'cpan', 'proxy', 'ciptool', 'pbm2l7k', 'grn', 'foomatic-configure', 'smbcontrol', 'nfs4_editfacl', 'xsubpp', 'aulastlog', 'oodraw', 'peekfd', 'protoize', 'dvd+rw-mediainfo', 'certmaster-getcert', 'padsp', 'krb5-config', 'dfutool', 'pinentry', 'xdg-screensaver', 'sctp_darn', 'dbusxx-introspect', 'xlsfonts', 'col', 'dvdrecord', 'findsmb', 'htdbm', 'time', 'dvipdf', 'mxtar', 'fusermount', 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'pagesize', 'afs5log', 'wvgain', 'vimtutor', 'tfmtodit', 'abrt-cli', 'numastat', 'db_printlog', 'xlsatoms', 'eu-ar', 'ogg123', 'oparchive', 'usermount', 'ssh', 'getent', 'f95', 'rarian-sk-preinstall', 'l2ping', 'znew', 'logname', 'gnome-search-tool', 'p11-kit', 'stap-merge', 'hwloc-distances', 'ppdpo', 'desktop-file-install', 'mcomp', '[', 'cut', 'festival', 'ooffice', 'canberra-gtk-play', 'zforce', 'h2ph', 'psfaddtable', 'setsid', 'gvfs-ls', 'namei', 'checkmodule', 'last', 'grotty', 'showkey', 'netaddr', 'nosetests', 'memhog', 'expresskeys', 'catchsegv', 'cc', 'im-chooser', 'libnetcfg', 'nroff', 'users', 'raw2tiff', 'check-binary-files', 'abrt-action-generate-core-backtrace', 'assistant_adp', 'xml_split', 'metacity-message', 'pasuspender', 'xdg-icon-resource', 'printserverdb', 'printafm', 'zipgrep', 'gnome-window-properties', 'gnomevfs-monitor', 'smbpasswd', 'pactl', 'tnameserv', 'gvfs-less', 'kdestroy', 'latrace-ctl', 'wftopfa', 'tiffcp', 'semodule_package', 'fprintd-list', 'profiles', 'pdf2dsc', 'perf', 'qrerun', 'mozilla-plugin-config', 'foomatic-datafile', 'oldfind', 'xrandr', 'states', 'dbiproxy', 'msguniq', 'hwloc-distrib', 'gencat', 'authconfig', 'gpg2', 'gfortran', 'rarian-sk-rebuild', 'smp_conf_route_info', 'satyr', 'rmiregistry', 'evince-previewer', 'rsvg-view', 'lastb', 'c89', 'ypmatch', 'c++filt', 'w', 'unpack200', 'report', 'klist', 'indxbib', 'nautilus-connect-server', 'cheese', 'xdriinfo', 'sndfile-resample', 'pstree.x11', 'abrt-action-save-kernel-data', 'cdda2ogg', 'who', 'mkfifo', 'gettext.sh', 'hwloc-info', 'runcon', 'gettextize', 'combinedeltarpm', 'cg_diff', 'cas', 'dir', 'c99', 'slogin', 'tiffinfo', 'look', 'ypcat', 'gvfs-copy', 'i386', 'iostat', 'timeout', 'abrt-action-analyze-ccpp-local', 'du', 'gdbus', 'rpm2cpio', 'activation-client', 'stdbuf', 'scrollkeeper-gen-seriesid', 'growisofs', 'resizecons', 'gtbl', 'theora_player.bin', 'xzcat', 'kinit', 'gnomevfs-mv', 'system-config-printer-applet', 'gsdj500', 'db_upgrade', 'numactl', 'nproc', 'git-upload-archive', 'fail2ban-server', 'getfacl', 'lpr', 'iok', 'find', 'pcregrep', 'at', 'locale', 'bonobo-activation-run-query', 'qmove', 'shuf', 'purple-url-handler', 'htpasswd', 'whereis', 'qnodes', 'gnome-text-editor', 'aserver', 'pdfimages', 'imsettings-restart', 'nss-policy-check', 'alsa-info', 'rarian-sk-get-scripts', 'libwacom-list-local-devices', 'qenable', 'setup', 'gnome-keybinding-properties', 'yes', 'pod2man', 'enc2xs', 'tac', 'less', 'fail2ban-regex', 'db_verify', 'pack200', 'abrt-gui-root', 'cue2toc', 'cloog', 'makedeltarpm', 'lshal', 'ps2pdf12', 'gnome-panel', 'cdrecord', 'sdptool', 'opcontrol', 'lzmainfo', 'xsltproc', 'totem-audio-preview', 'xvinfo', 'tiff2rgba', 'foomatic-printjob', 'size', 'smp_rep_phy_err_log', 'purple-remote', 'reporter-mailx', 'ps2pdfwr', 'pre-grohtml', 'qgpureset', 'sndfile-convert', 'update-gio-modules', 'rsvg-convert', 'slabtop', 'gst-inspect-0.10', 'gpasswd', 'gvfs-monitor-file', 'xzdiff', 'strace-log-merge', 'atrm', 'gpgv2', 'flac', 'dvd+rw-format', 'libtool', 'rpmsign', 'nl', 'killall', 'syndaemon', 'semodule_link', 'prove', 'pcre-config', 'create-branching-keyboard', 'kasumi', 'ulockmgr_server', 'fc-scan', 'ccmake', 'links', 'gaim', 'yelp', 'getcifsacl', 'gvfs-info', 'a2p', 'msgconv', 'ipcmk', 'pl2pm', 'test', 'alsamixer', 'lzcat', 'bluetooth-properties', 'write', 'consolehelper-gtk', 'compiz', 'locate', 'gdk-pixbuf-query-loaders-64', 'getopt', 'reporter-upload', 'find-repos-of-install', 'diff-jars', 'infocmp', 'grolbp', 'mcheck', 'libreoffice', 'sndfile-regtest', 'isosize', 'config_data', 'scrollkeeper-preinstall', 'servertool', 'ttmkfdir', 'blkparse', 'xstdcmap', 'mapscrn', 'dircolors', 'amuFormat.sh', 'repoclosure', 'rarian-sk-get-content-list', 'pdbedit', 'pstack', 'setup-nsssysinit.sh', 'sgmlwhich', 'totem-video-indexer', 'ekiga-config-tool', 'mailq.postfix', 'dbiprof', 'hcitool', 'hal-disable-polling', 'newgrp', 'gvfs-save', 'lkbib', 'pinentry-gtk', 'uuclient', 'startx', 'truncate', 'gvfs-set-attribute', 'ltrace', 'gnome-typing-monitor', 'gsnd', 'gvfs-open', 'autoupdate', 'setfacl', 'lzfgrep', 'gtk-query-immodules-2.0-64', 'mcd', 'oddjob_request', 'lessecho', 'od', 'foomatic-combo-xml', 'linux64', 'zdiff', 'autoreconf', 'gnome-open', 'sim_client', 'xdg-open', 'ooviewdoc', 'tiffset', 'dirname', 'ophelp', 'hwloc-bind', 'gconf-merge-tree', 'gnome-session-properties', 'eu-nm', 'db_deadlock', 'gst-xmlinspect-0.10', 'shasum', 'eject', 'notify-send', 'eu-unstrip', 'gnome-font-viewer', 'isovfy', 'file', 'isodebug', 'keytool', 'gnote', 'chsh', 'xzless', 'cvs', 'mrd', 'qstart', 'lwp-rget', 'scrollkeeper-extract', 'chvt', 'btparser', 'gslp', 'gvfs-rename', 'smp_phy_test', 'scl', 'sedispol', 'rmail', 'lp', 'fprintd-delete', 'rarian-sk-config', 'envsubst', 'lzmadec', 'abrt-action-trim-files', 'package-cleanup', 'lsattr', 'git', 'wget', 'sadf', 'whiptail', 'unzipsfx', 'repomanage', 'vorbiscomment', 'cjet', 'build-classpath', 'system-config-services', 'pic2graph', 'rrdcgi', 'groups', 'imsettings-info', 'instmodsh', 'gssdp-device-sniffer', 'nfs4_getfacl', 'rarian-sk-migrate', 'qstop', 'perldoc', 'x86_64-redhat-linux-g++', 'pdf2ps', 'xsetroot', 'isdv4-serial-inputattach', 'pinentry-curses', 'awk', 'zless', 'strace', 'smbprint', 'scrollkeeper-config', 'rarian-sk-extract', 'toc2cddb', 'make.bak', 'deallocvt', 'pod2usage', 'abrt-action-analyze-c', 'fprintd-enroll', 'vino-preferences', 'pidgin', 'gnome-power-preferences', 'newaliases.postfix', 'gnome-screensaver-command', 'aseqnet', 'gpk-prefs', 'xwininfo', 'db_codegen', 'ppm2tiff', 'report-newt', 'authconfig-gtk', 'lsusb.py', 'lzdiff', 'ssh-agent', 'yumdownloader', 'aclocal', 'wish8.5', 'system-config-network-cmd', 'readlink', 'oomath', 'firefox', 'iso-read', 'build-jar-repository', 'psed', 'tiffcrop', 'k5srvutil', 'eu-strings', 'gpg', 'update-gdk-pixbuf-loaders', 'bdftops', 'install'] [] ['adsl-stop', 'sasldblistusers2', 'pk-device-rebind', 'tcpd', 'sktest', 'saned', 'pm-hibernate', 'atd', 'pppoe-discovery', 'load_policy', 'readprofile', 'xfs_db', 'rpcdebug', 'tracepath6', 'nfsstat', 'cupsreject', 'ntp-keygen', 'httpd.event', 'rotatelogs', 'pm-suspend-hybrid', 'selinuxenabled', 'lusermod', 'qnoded', 'cache_restore', 'lpc', 'setenforce', 'chat', 'apachectl', 'cupsaddsmb', 'smartctl', 'era_check', 'postkick', 'ipa-getkeytab', 'pppoe-stop', 'acpid', 'biosdecode', 'foomatic-addpjloptions', 'lnstat', 'postlock', 'spice-vdagentd', 'pm-suspend', 'pppoe-relay', 'getsebool', 'raid-check', 'sim_server', 'foomatic-cleanupdrivers', 'setquota', 'showmount', 'xfs_rtcp', 'pppoe-setup', 'system-config-keyboard', 'thin_dump', 'tracepath', 'adsl-start', 'grpunconv', 'reject', 'era_dump', 'tcpdump', 'gdm-binary', 'foomatic-extract-text', 'httpd.worker', 'foomatic-printermap-to-gutenprint-xml', 'postlog', 'abrtd', 'thin_delta', 'adsl-setup', 'lsusb', 'nfsidmap', 'pwconv', 'ntsysv', 'dump-utmp', 'cache_dump', 'setregdomain', 'atrun', 'postqueue', 'groupmod', 'lgroupdel', 'lpmove', 'yptest', 'xfs_bmap', 'thin_restore', 'xfs_io', 'ck-log-system-restart', 'system-config-network-tui', 'wpa_cli', 'abrt-install-ccpp-hook', 'pdata_tools', 'matchpathcon', 'virt-what', 'postsuper', 'filefrag', 'postmap', 'brctl', 'update-pciids', 'thin_trim', 'ldattach', 'certmonger', 'htcacheclean', 'foomatic-getpjloptions', 'thin_repair', 'sestatus', 'applygnupgdefaults', 'ipa-client-install', 'xfs_mdrestore', 'pppstats', 'pm-powersave', 'ss', 'system-config-network', 'useradd', 'xfs_mkfile', 'mcelog', 'newusers', 'foomatic-replaceoldprinterids', 'zic', 'hciconfig', 'ipset', 'packagekitd', 'lpinfo', 'pbs_mom', 'foomatic-kitload', 'cupsctl', 'efibootmgr', 'cups-genppdupdate', 'sa', 'suexec', 'uuserver', 'tcpdmatch', 'qserverd', 'foomatic-nonumericalids', 'addgnupghome', 'restorecond', 'httxt2dbm', 'xfs_admin', 'xfs_ncheck', 'plymouth-set-default-theme', 'groupmems', 'crond', 'warnquota', 'getpcaps', 'iconvconfig', 'bluetoothd', 'ntpdc', 'luseradd', 'ntpq', 'pppoe-server', 'postfix', 'ntpd', 'rpc.ypxfrd', 'tmpwatch', 'qschedd', 'cracklib-packer', 'nstat', 'pluginviewer', 'dump-acct', 'rpc.rquotad', 'sss_cache', 'pppd', 'luserdel', 'pbs_sched', 'ntpdate', 'mkdict', 'dmidecode', 'cupsd', 'irqbalance', 'bonobo-activation-sysconf', 'logrotate', 'create-cracklib-dict', 'xfs_quota', 'cracklib-format', 'rpc.idmapd', 'thin_metadata_size', 'selinuxdefcon', 'lpadmin', 'rpc.mountd', 'rpc.yppasswdd', 'skdump', 'console-kit-daemon', 'sosreport', 'userdel', 'via_regs_dump', 'try-from', 'saslauthd', 'sserver', 'hciattach', 'prelink', 'avahi-autoipd', 'cupsenable', 'pwck', 'cpuspeed', 'abrt-auto-reporting', 'automount', 'lgroupmod', 'yppush', 'arpd', 'lnewusers', 'usernetctl', 'repquota', 'NetworkManager', 'zdump', 'pethtool', 'semodule', 'cups-genppd.5.2', 'rpc.gssd', 'xfs_growfs', 'ipa-join', 'setcap', 'glibc_post_upgrade.x86_64', 'xfs_check', 'lgroupadd', 'makewhatis', 'makedumpfile', 'era_restore', 'grpconv', 'rtkitctl', 'groupdel', 'ledctl', 'crda', 'selinuxconlist', 'ypset', 'sshd', 'sendmail.postfix', 'redhat_lsb_trigger.x86_64', 'ledmon', 'authconfig-tui', 'yppoll', 'pppoe-start', 'regdbdump', 'cifs.upcall', 'tickadj', 'ypbind', 'pbs_server', 'gss-server', 'sm-notify', 'rpc.svcgssd', 'postdrop', 'start-statd', 'groupadd', 'togglesebool', 'postcat', 'accept', 'wpa_supplicant', 'httpd', 'quota_nld', 'pifconfig', 'lshw', 'ethtool', 'lokkit', 'pppoe-status', 'system-config-authentication', 'getenforce', 'iconvconfig.x86_64', 'dnsmasq', 'oddjobd', 'capsh', 'abrt-dbus', 'chronyd', 'rtacct', 'firstboot', 'adcli', 'cracklib-unpacker', 'adduser', 'alternatives', 'lsof', 'momctl', 'update-alternatives', 'userhelper', 'iotop', 'pppdump', 'tzdata-update', 'cupsaccept', 'serviceconf', 'pppoe-sniff', 'latencytop-tui', 'lpasswd', 'quotastats', '.sshd.hmac', 'krb5-send-pr', 'sssd', 'rtcwake', 'pppoe-connect', 'foomatic-fix-xml', 'pppoe', 'pbs_demux', 'nfsiostat', 'ipa-client-automount', 'rpc.nfsd', 'ipa-rmkeytab', 'cifs.idmap', 'vipw', 'yumdb', 'xfs_estimate', 'mountstats', 'anacron', 'xfs_freeze', 'grpck', 'netscsid', 'thin_ls', 'powertop', 'cracklib-check', 'fdformat', 'authconfig', 'era_invalidate', 'lockdev', 'xfs_copy', 'alsa-delay', 'vigr', 'packer', 'sendmail', 'cache_repair', 'clockdiff', 'usermod', 'cacertdir_rehash', 'lid', 'postconf', 'smtp-sink', 'chpasswd', 'smtp-source', 'saslpasswd2', 'vpddecode', 'setup', 'bccmd', 'ck-log-system-stop', 'lchage', 'ownership', 'mksock', 'postalias', 'abrt-server', 'ypserv', 'gdm', 'ck-log-system-start', 'accton', 'rpcinfo', 'foomatic-preferred-driver', 'avcstat', 'arping', 'hald', 'e2freefrag', 'edquota', 'xfs_info', 'open_init_pty', 'xfs_fsr', 'convertquota', 'xfs_metadump', 'winbindd', 'getcap', 'tunelp', 'cupsfilter', 'build-locale-archive', 'testsaslauthd', 'genhomedircon', 'mtr', 'yum-complete-transaction', 'ntptime', 'safe_finger', 'ypserv_test', 'cupsdisable', 'chroot', 'eject', 'exportfs', 'modem-manager', 'cache_check', 'tcpslice', 'setsebool', 'thin_rmap', 'smartd', 'mklost+found', 'system-config-services', 'xfs_logprint', 'thin_check', 'run_init', 'ping6', 'sys-unconfig', 'update-smart-drivedb', 'alsactl', 'postmulti', 'usbmuxd', 'cache_metadata_size', 'visudo', 'pwunconv', 'authconfig-gtk', 'trqauthd', 'hwclock', 'system-config-network-cmd', 'wpa_passphrase', 'lpc.cups'] ['sln', 'setpci', 'arp', 'load_policy', 'lvm', 'xfs_repair', 'mdmon', 'dracut', 'blockdev', 'rfkill', 'auditd', 'dhclient', 'readahead', 'quotaoff', 'blkdiscard', 'cache_restore', 'lvmconf', 'fsck.ext3', 'fsck.ext4dev', 'MAKEDEV', 'telinit', 'nfs_cache_getent', 'insmod.static', 'lvremove', 'runuser', 'era_check', 'initctl', 'badblocks', 'depmod', 'pppoe-stop', 'restart', 'parted', 'swapon', 'getkey', 'pppoe-relay', 'grubby', 'debugfs', 'dmraid.static', 'ip6tables', 'installkernel', 'ip6tables-multi-1.4.7', 'partx', 'pppoe-setup', 'thin_dump', 'iptables-multi', 'ip6tables-save', 'wipefs', 'era_dump', 'mkswap', 'vgmknodes', 'fsck.ext4', 'rngd', 'weak-modules', 'thin_delta', 'partprobe', 'agetty', 'plymouthd', 'grub-terminfo', 'dmstats', 'mkfs.ext2', 'cache_dump', 'busybox', 'netreport', 'ldconfig', 'pvdisplay', 'sulogin', 'e2image', 'thin_restore', 'setsysfont', 'pam_tally2', 'reboot', 'quotacheck', 'cgrulesengd', 'rmmod', 'restorecon', 'fsck.msdos', 'pdata_tools', 'matchpathcon', 'vgrename', 'pvscan', 'resize2fs', 'switch_root', 'dmraid', 'thin_trim', 'ip6tables-multi', 'iptables-1.4.7', 'vconfig', 'thin_repair', 'pvck', 'dmevent_tool', 'vgconvert', 'umount.hal', 'readahead-collector', 'ipmaddr', 'vgdisplay', 'lvscan', 'e2fsck', 'killall5', 'poweroff', 'setfiles', 'modinfo', 'route', 'unix_chkpwd', 'tune2fs', 'iwlist', 'genhostid', 'mount.nfs', 'mount.tmpfs', 'vgck', 'fsfreeze', 'pvs', 'mkdumprd', 'start_udev', 'fsck.cramfs', 'unix_update', 'ifdown', 'ifcfg', 'iw', 'lvchange', 'nologin', 'hdparm', 'mkfs.xfs', 'cbq', 'chcpu', 'consoletype', 'blkdeactivate', 'pppoe-server', 'fixfiles', 'ip', 'mount.cifs', 'lvmsadc', 'lvmconfig', 'vgmerge', 'reload', 'ifup', 'lvreduce', 'grub-install', 'lvs', 'faillock', 'iptables-restore', 'umount.udisks', 'rdisc', 'pam_console_apply', 'mii-tool', 'lspcmcia', 'kdump', 'slattach', 'iptables-restore-1.4.7', 'ppp-watch', 'swapoff', 'thin_metadata_size', 'mkfs.cramfs', 'vgcfgbackup', 'grub', 'auditctl', 'nameif', 'lvcreate', 'augenrules', 'vgscan', 'ether-wake', 'lvmsar', 'stop', 'cgconfigparser', 'new-kernel-pkg', 'lvresize', 'bridge', 'delpart', 'mkinitrd', 'ip6tables-restore', 'mount.fuse', 'start', 'vgreduce', 'grub-md5-crypt', 'addpart', 'pvresize', 'iwpriv', 'ausearch', 'vgs', 'lvconvert', 'runlevel', 'era_restore', 'iwconfig', 'scsi_id', 'pidof', 'pppoe-start', 'request-key', 'mkdosfs', 'rpc.statd', 'sysctl', 'plipconfig', 'init', 'insmod', 'vgchange', 'modprobe', 'halt', 'lvmdiskscan', 'chkconfig', 'fstrim', 'ethtool', 'lvrename', 'pppoe-status', 'iwgetid', 'vgsplit', 'vgimport', 'umount.nfs4', 'ip6tables-restore-1.4.7', 'vgcfgrestore', 'lspci', 'install-info', 'iptables-save', 'udevadm', 'shutdown', 'fsck', 'cryptsetup', 'pppoe-sniff', 'dmsetup', 'vgexport', 'securetty', 'sfdisk', 'pppoe-connect', 'cgclear', 'pppoe', 'iptables', 'quotaon', 'iptables-multi-1.4.7', 'umount.nfs', 'ifenslave', 'cfdisk', 'mkfs.vfat', 'iptunnel', 'mii-diag', 'tc', 'ctrlaltdel', 'fstab-decode', 'mkfs', 'blkid', 'portreserve', 'ifrename', 'thin_ls', 'lsinitrd', 'biosdevname', 'audispd', 'pvremove', 'era_invalidate', 'e2undo', 'iwspy', 'mount.nfs4', 'pccardctl', 'lvdisplay', 'lvextend', 'cache_repair', 'rsyslogd', 'mkfs.msdos', 'vgcreate', 'vgextend', 'pvchange', 'lvmetad', 'rpcbind', 'logsave', 'fsadm', 'dm_dso_reg_tool', 'fdisk', 'fuser', 'lvmdump', 'pivot_root', 'clock', 'accton', 'ip6tables-1.4.7', 'dosfslabel', 'arping', 'e2label', 'lsmod', 'grub-crypt', 'lvmchange', 'autrace', 'portrelease', 'sushell', 'ifconfig', 'dumpe2fs', 'dosfsck', 'vmcore-dmesg', 'iwevent', 'findfs', 'pvcreate', 'fsck.ext2', 'vgimportclone', 'udevd', 'service', 'status', 'microcode_ctl', 'pam_timestamp_check', 'kexec', 'mingetty', 'pvmove', 'mkhomedir_helper', 'fsck.vfat', 'mkfs.ext4dev', 'cache_check', 'dhclient-script', 'thin_rmap', 'mdadm', 'mkfs.ext3', 'thin_check', 'kpartx', 'sgpio', 'ip6tables-save-1.4.7', 'alsactl', 'vgremove', 'mke2fs', 'losetup', 'cache_metadata_size', 'mkfs.ext4', 'hwclock', 'iptables-save-1.4.7', 'fsck.xfs', 'aureport', 'dmeventd', 'rtmon'] ['opal_wrapper', 'orte-clean', 'orted', 'orterun', 'ortecc', 'orte-info', 'orte-server', 'mpirun', 'mpiexec', 'ompi-clean', 'ompi-server', 'profile2mat.pl', 'aggregate_profile.pl', 'ompi_info', 'mpicc', 'mpic++', 'mpicxx', 'mpifort', 'mpif77', 'mpif90', 'mpiCC'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] child config.packages.c2html 0.002726 ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.000720 ================================================================================ TEST alternateConfigureLibrary from config.packages.silo(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.000710 ================================================================================ TEST alternateConfigureLibrary from config.packages.Random123(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.000715 ================================================================================ TEST alternateConfigureLibrary from config.packages.PARTY(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.000712 ================================================================================ TEST alternateConfigureLibrary from config.packages.Matlab(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.000545 ================================================================================ TEST alternateConfigureLibrary from config.packages.MatlabEngine(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.000601 ================================================================================ TEST alternateConfigureLibrary from config.packages.Mathematica(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.000620 ================================================================================ TEST checkDependencies from config.packages.regex(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.regex(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ================================================================================ TEST check from config.libraries(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -c -o /tmp/petsc-w22h8k_x/config.libraries/conftest.o -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.compilers -I/tmp/petsc-w22h8k_x/config.utilities.closure -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.utilities.cacheDetails -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.functions -I/tmp/petsc-w22h8k_x/config.utilities.featureTestMacros -I/tmp/petsc-w22h8k_x/config.utilities.missing -I/tmp/petsc-w22h8k_x/PETSc.options.scalarTypes -I/tmp/petsc-w22h8k_x/config.packages.MPI -I/tmp/petsc-w22h8k_x/config.packages.valgrind -I/tmp/petsc-w22h8k_x/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -o /tmp/petsc-w22h8k_x/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-w22h8k_x/config.libraries/conftest.o -lstdc++ -ldl Checking for optional headers [] in Compiler specific search REGEX: [] ================================================================================ TEST checkInclude from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['regex.h'] in Compiler specific search REGEX: [] ================================================================================ TEST checkInclude from config.headers(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/ivanluthfi1/openmpi/opt-4.1.1/bin/mpicc -E -I/tmp/petsc-w22h8k_x/config.setCompilers -I/tmp/petsc-w22h8k_x/config.types -I/tmp/petsc-w22h8k_x/config.headers -I/tmp/petsc-w22h8k_x/config.packages.MPI /tmp/petsc-w22h8k_x/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['regex.h'] in [] ================================================================================ TEST checkVersion from config.packages.regex(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.regex(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.regex 0.107942 ================================================================================ TEST alternateConfigureLibrary from config.packages.opengl(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.002420 ================================================================================ TEST alternateConfigureLibrary from config.packages.glut(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.001487 ================================================================================ TEST alternateConfigureLibrary from config.packages.CoDiPack(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.001668 ================================================================================ TEST alternateConfigureLibrary from config.packages.adblaslapack(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.001680 ================================================================================ TEST alternateConfigureLibrary from config.packages.cuda(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.cuda 0.001451 child config.packages.cxxlibs 0.000031 ================================================================================ TEST alternateConfigureLibrary from config.packages.ADOLC(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.001667 Building CMake Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST checkDependencies from config.packages.cmake(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.cmake(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.cmake(/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.cmake(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional cmake Looking for CMAKE at git.cmake, hg.cmake or a directory starting with ['cmake'] Found a copy of CMAKE in cmake-3.15.6 CMAKE build - adding MAKE location to PATH: /home/ivanluthfi1/petsc-3.13.6/arch-linux-c-debug/bin Have to rebuild CMAKE, /home/ivanluthfi1/petsc-3.13.6/arch-linux-c-debug/externalpackages/cmake-3.15.6/cmake.petscconf != /home/ivanluthfi1/petsc-3.13.6/arch-linux-c-debug/lib/petsc/conf/pkg.conf.cmake =============================================================================== Running configure on CMAKE; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: ./configure --prefix=/home/ivanluthfi1/petsc-3.13.6/arch-linux-c-debug --parallel=7 stdout: --------------------------------------------- CMake 3.15.6, Copyright 2000-2019 Kitware, Inc. and Contributors Found GNU toolchain C compiler on this system is: gcc --------------------------------------------- Error when bootstrapping CMake: Cannot find a C++ compiler that supports both C++11 and the specified C++ flags. Please specify one using environment variable CXX. The C++ flags are "". They can be changed using the environment variable CXXFLAGS. See cmake_bootstrap.log for compilers attempted. --------------------------------------------- Log of errors: /home/ivanluthfi1/petsc-3.13.6/arch-linux-c-debug/externalpackages/cmake-3.15.6/Bootstrap.cmk/cmake_bootstrap.log --------------------------------------------- Error running configure on CMAKE: Could not execute "['./configure --prefix=/home/ivanluthfi1/petsc-3.13.6/arch-linux-c-debug --parallel=7']": --------------------------------------------- CMake 3.15.6, Copyright 2000-2019 Kitware, Inc. and Contributors Found GNU toolchain C compiler on this system is: gcc --------------------------------------------- Error when bootstrapping CMake: Cannot find a C++ compiler that supports both C++11 and the specified C++ flags. Please specify one using environment variable CXX. The C++ flags are "". They can be changed using the environment variable CXXFLAGS. See cmake_bootstrap.log for compilers attempted. --------------------------------------------- Log of errors: /home/ivanluthfi1/petsc-3.13.6/arch-linux-c-debug/externalpackages/cmake-3.15.6/Bootstrap.cmk/cmake_bootstrap.log --------------------------------------------- **** Configure header /tmp/petsc-w22h8k_x/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_CLANGUAGE_C 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_SIGNAL_CAST #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE OMP #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_OMPI_MAJOR_VERSION 4 #define PETSC_HAVE_OMPI_MINOR_VERSION 1 #define PETSC_HAVE_OMPI_RELEASE_VERSION 1 #define PETSC_Alignx(a,b) #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_MEMALIGN 16 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_PYTHON_EXE "/usr/bin/python3" #define PETSC_HAVE_VALGRIND 1 #endif **** C specific Configure header /tmp/petsc-w22h8k_x/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Error running configure on CMAKE ******************************************************************************* File "/home/ivanluthfi1/petsc-3.13.6/config/configure.py", line 451, in petsc_configure framework.configure(out = sys.stdout) File "/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/framework.py", line 1252, in configure self.processChildren() File "/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/framework.py", line 1241, in processChildren self.serialEvaluation(self.childGraph) File "/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/framework.py", line 1216, in serialEvaluation child.configure() File "/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/cmake.py", line 75, in configure config.package.GNUPackage.configure(self) File "/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py", line 1110, in configure self.executeTest(self.configureLibrary) File "/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/base.py", line 139, in executeTest ret = test(*args,**kargs) File "/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py", line 875, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py", line 453, in generateGuesses d = self.checkDownload() File "/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py", line 587, in checkDownload return self.getInstallDir() File "/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py", line 342, in getInstallDir installDir = self.Install() File "/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/packages/cmake.py", line 47, in Install retdir = config.package.GNUPackage.Install(self) File "/home/ivanluthfi1/petsc-3.13.6/config/BuildSystem/config/package.py", line 1632, in Install raise RuntimeError('Error running configure on ' + self.PACKAGE) ================================================================================ Finishing configure run at Sat, 30 Sep 2023 12:58:15 +0800 ================================================================================