Executing: uname -s stdout: Darwin ============================================================================================= Configuring PETSc to compile on your system ============================================================================================= ================================================================================ ================================================================================ Starting configure run at Thu, 28 Sep 2023 11:47:02 +0200 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-hdf5-dir=/opt/homebrew/opt/hdf5-mpi --with-hdf5-fortran-bindings --download-metis --download-parmetis --download-scalapack --download-mumps --download-suitesparse --with-shared-libraries=0 Working directory: /Users/pjt/Software/PETSc/petsc-3.19.5 Machine platform: uname_result(system='Darwin', node='GoldenAir.local', release='22.6.0', version='Darwin Kernel Version 22.6.0: Fri Sep 15 13:41:30 PDT 2023; root:xnu-8796.141.3.700.8~1/RELEASE_ARM64_T8103', machine='arm64') Python version: 3.11.5 (main, Aug 24 2023, 15:09:45) [Clang 14.0.3 (clang-1403.0.22.14.1)] ================================================================================ Environmental variables __CFBundleIdentifier=com.apple.Terminal TMPDIR=/var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/ XPC_FLAGS=0x0 LaunchInstanceID=7C0A8128-4A82-4FCE-8121-19E03BC4C77B TERM=xterm-256color DISPLAY=/private/tmp/com.apple.launchd.xjXXqlcPjl/org.xquartz:0 SECURITYSESSIONID=186ad SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.UZbwD6VPp7/Listeners XPC_SERVICE_NAME=0 TERM_PROGRAM=Apple_Terminal TERM_PROGRAM_VERSION=447 TERM_SESSION_ID=836C725C-C182-453E-98E8-0743A2191FF9 SHELL=/bin/zsh HOME=/Users/pjt LOGNAME=pjt USER=pjt PATH=/opt/homebrew/bin:/opt/homebrew/sbin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/usr/local/share/dotnet:/opt/X11/bin:~/.dotnet/tools:/Library/Apple/usr/bin:/Library/Frameworks/Mono.framework/Versions/Current/Commands:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:.:/Applications/Julia-1.9.app/Contents/Resources/julia/bin SHLVL=1 PWD=/Users/pjt/Software/PETSc/petsc-3.19.5 OLDPWD=/Users/pjt/Software/PETSc/petsc-3.16.1-brew PETSC_DIR=/Users/pjt/Software/PETSc/petsc-3.19.5 PETSC_ARCH=arch-darwin-c-opt HOMEBREW_PREFIX=/opt/homebrew HOMEBREW_CELLAR=/opt/homebrew/Cellar HOMEBREW_REPOSITORY=/opt/homebrew MANPATH=/opt/homebrew/share/man:: INFOPATH=/opt/homebrew/share/info: LC_CTYPE=UTF-8 _=/Users/pjt/Software/PETSc/petsc-3.19.5/./configure __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x2 Files in path provided by default path /opt/homebrew/bin: ndmetis ppmtouil pstoedit qt-configure-module wheel3.11 lzmainfo xwdtopnm ppmtorgb3 pamtohdiff pbmtoppa md5sum unzstd Assistant ccmake ppmtoyuvsplit qmake pip3.9 gsha512sum msgconv pbmtonokia leaftoppm dvipdf g-ir-compiler event_rpcgen.py qmldom gusers gpcl6c pnminvert lame pkg-config pbmpage h5perf pnmrotate bdftogd hwloc-compress-dir gprintenv gif2rgb gen-enc-table gmknod pgmslice aarch64-apple-darwin22-gfortran-13 ppmshadow anytopnm djxl asciitopgm jemalloc-config qmlplugindump ppmtoppm pgmkernel tifftopnm fig2ps2tex Linguist msggrep pbmtoescp2 h5fuse.sh ppmcie idle3.11 ddbugtopbm pgmhist rawtoppm shuf gdd hzip webpng identify sndfile-cmp pnmcut aclocal gcc-13 pnmhistmap canbusutil gtsort palmtopnm pamseq caf pcre2grep glpsol autopoint macdeployqt mpif90 fitstopnm gifclrmp pampick hwloc-bind pngtopam pzstd pambrighten montage ppmmix grealpath g-ir-annotation-tool qmltc tificc grmdir pnmtofits pamrecolor pgmmake pamaltsat pbmtog3 gfold qmlprofiler ctags dbus-monitor pbmtomrf animate pamtilt gnl nghttp MagickCore-config sexp-conv MagickWand-config tree-sitter ps2ps greadlink gshred pbmtodjvurle wheel3.10 gmv h5copy c_rehash xzdec dcraw_half tiffsplit pambayer ppmforge pnmtosgi ppmtojpeg wheel3 runcon luac5.4 simple_dcraw mtvtoppm pamstretch idle3.10 qoitopam h5pcc hunzip pamfunc gmkdir androiddeployqt6 pcdovtoppm linkicc msgcomm gkill pnmnoraw wordlist2hunspell h5perf_serial fc-list pnmpaste guniq pamsharpness opj_compress aarch64-apple-darwin22-gcc-ranlib-13 scilab-cli GraphicsMagickWand-config ppmtoilbm balsam gpr mpirun qmltestrunner texi2pdf heif-enc pnminterp-gen acountry lispmtopgm gtester ppmrainbow bjoentegaard lupdate dcraw_emu pbmtopgm gcc-nm-13 pnmtops pbmtocis autoscan gd2togif qmltime cxpm 411toppm orted gfortran asn1Decoding opj_dump 2to3 pbmtoxbm ptx fftwl-wisdom ppmfade pamperspective python3 pnmtoddif pamfind ghead ompi_info plot gs macdeployqt6 png-fix-itxt lua-5.4 jxlinfo pamslice pamsharpmap ppmtotga pbmtowbmp pgmenhance gnuplot pyrcc5 luac glink gstat meshdebug jbigtopnm qml pgmtosbig cmake fortls gmktemp zstdless etags ppmflash materialeditor opj_decompress tiffdump gyes pamaddnoise nghttpx h5unjam pbmtogem ppmspread ppmddumpfont gcc-ar-13 gsha1sum fc-pattern ilbmtoppm shadergen pbmtox10bm pnmfile assimp g++-13 python wheel3.9 unxz ppmdmkfont qvoronoi lrelease nghttpd pbmtolps hwloc-distrib h5delete pammasksharpen balsamui jiv freetype-config pip3 exrmultipart b2sum pgmnorm gr2fonttest gcov-13 unprocessed_raw gnutls-serv grm sunicontopnm exrmultiview pcre2test gdbus-codegen fc-validate pamtopdbimg ddd cjpeg pamcat autom4te ppmchange h5stat mpg123 cmpfillin aggregate_profile.pl escp2topbm jpegtran guile-tools h5ls xmbind exrmaketiled wordforms lstopo pbmminkowski libpng16-config heif-info ompi-server gsha256sum pamshuffle yuvtoppm bashbug xzegrep gsettings ps2pdfwr pngfix zeisstopnm ps2pdf12 gfalse xmlto glib-compile-schemas webpmux mpg123-id3dump pamscale pgmtopgm fc-query brotli pnmtopng cameratopam pnmtojpeg gwho yuvsplittoppm gcut rasttopnm exr2aces ppmtopjxl pbmtoicon ebrowse pbmreduce ppmdist pamsistoaglyph gpcl6 pbmtozinc unlzma gvdir pgmtexture pbmto4425 gdir ppmdim gchmod luac-5.4 pbmpscale ppmtopuzz ybmtopbm pbmtomgr pbmtopi3 hdifftopam pamexec ppmtowinicon Magick++-config gbase32 pktopbm lz4cat pgmtolispm sha224sum fiascotopnm pamdepth update-mime-database qdbusxml2cpp gsdj psktool hwloc-calc ghostid stream gnohup gtr pnmarith pjtoppm gdirname xzfgrep sirtopnm gsha384sum gchroot webpinfo uil gdtopng hwloc-info g-ir-generate h5jam libpng-config exrinfo pnmscalefixed profile2mat.pl gdbm_dump pbmtomda pdf2dsc fltk-config pod2texi pamtompfont gpaste gobject-query brushtopbm ps2pdf14 dbus-launch pnmsmooth asn1Coding pnmenlarge brew pnmtopclxl fstopgm pgmdeshadow plotfont graph vmaf gsnd ppmtopi1 ps2pdf13 timeout ppmdcfont bmptopnm pnminterp g3topbm tac numfmt pamgetcolor gid pbmtoascii hunspell pnmcrop pnmtopalm pamsplit gpinky pbmlife pamundice xpmtoppm lz4 rletopnm pngtogd2 h2load genv msgen basenc sgitopnm pbmtoepsi sldtoppm sndfile-metadata-set pnmflip eyuvtoppm nproc raw-identify python3.10-config autoupdate pnmtosir gln pambackground g-ir-inspect manweb gbasename aec python3.11 orte-clean munch pdbimgtopam jpeg2ktopam pnmtotiff pamshadedrelief mdatopbm ppmtoeyuv ppmntsc djpeg rawtextdump picttoppm gtruncate stdbuf giftopnm sndfile-salvage pnmindex pnmshear pnmtile annotate msgmerge pamtopnm fftwf-wisdom pamunlookup pamlevels qqem neotoppm wbmptopbm pbmtobbnbg qmlformat h5mkgrp aarch64-apple-darwin22-c++-13 pamrgbatopng rlatopam dbus-test-tool pgmramp m2gmetis pnmcomp pamtooctaveimg gio-querymodules mpif77 zstdgrep pamtohtmltbl chcon gcp pcdindex ppmtoneo fribidi ppmtosixel pnmtorast h5format_convert pnmhisteq gemtopbm idle3 gls qtpaths6 factor gtrue gchown mpmetis python3.9-config gdcmpgif nettle-pbkdf2 envsubst xz ppmdither pphs pi1toppm pampaintspill spctoppm cairo-trace gsdj500 pbmtomatrixorbital gdparttopng mgrtopbm h5repack gsync fluid gnutls-cli-debug ximtoppm glib-compile-resources python3.9 guptime pamtogif ppmtoacad mogrify python3.10 msginit mongoose unmunch emacs rbox lua ps2ascii gsum emacsclient dbus-send bash benchmark_xl gtac adig pamdice macptopbm pydoc3.10 composite pamtosvg pbmtogo pkcs1-conv ppmtolj ppmtoxpm gexpand gruncon gpathchk img2webp giftext hwloc-ls texindex pamstretch-gen pbmmask qdbusviewer ppmglobe sputoppm mpicc cmuwmtopbm fftw-wisdom pngtopnm pamstereogram python3-config pango-segmentation info qdelaunay ps2pdf tiffset automake-1.16 2to3-3.10 pamflip pfmtopam avstopam orterun tgatoppm gnutls-certtool giftogd2 pbmtextps lto-dump-13 pango-view aomdec ispellaff2myspell ppmpat pbmnoise pamtoxvmini hpcdtoppm h5watch dbus-daemon gnice pi3topbm pbmtoepson pnmnorm ppmtobmp gecho pamrestack pnmtoxwd pf2afm gpdlc gdu gb2sum pamcrater half_mt pango-list hb-ot-shape-closure qrttoppm heif-thumbnailer ppmtoarbtxt ppm3d fig2dev gtouch hwloc-patch giffix pamcomp gmkfifo pfbtopfa lzless cistopbm pamedge ode gdf qsb pydoc3.11 gjoin pbmtoatk ppmtoterm tiffinfo h5pfc gtest cairo-sphinx ppmdraw pnmconvol gmd5sum GraphicsMagick-config pgmoil gresource flac bioradtopgm psidtopgm avifenc heif-convert gunexpand pamtopfm gsort ocsptool idn pamtojpeg2k pamwipeout gcc-ranlib-13 pamsummcol jpegtopnm 2to3-3.11 sndfile-concat glibtool hipstopgm ppmtopict shapegen ahost graphchk chmorph gettext pnmcat gpmetis pgmminkowski gtester-report pc1toppm gshuf pgmabel gfmt pip3.11 atktopbm ppmtogif pbmclean glibtoolize ppmrelief gcov-dump-13 gettext.sh ctest aclocal-1.16 qdistancefieldgenerator gfortran-13 c++-13 avifdec pamfixtrunc epstool xzless zstd gunlink qtpaths exrmakepreview gslp msgcmp opal_wrapper lzcmp pnmstitch cjpeg_hdr jeprof pcre2-config gd2topng ppmtoicr lconvert orte-info gcsplit pydoc3.9 xzcat pamhue mrftopbm spline metaflac g[ multirender_test gwhoami pamthreshold autoreconf pamstack gsplit jbig2dec g-ir-scanner gseq dbtoepub gxps sha1sum pbmtocmuwm transicc exrstdattr wrjpgcom mpicxx pnmtofiasco sha256sum ppmquant postprocessing_benchmark autoconf texi2dvi sndfile-deinterleave lz4c pbmtoplot qconvex pbmmake pnmtotiffcmyk orte-server pamtoavs pbmtosunicon qmllint pip3.10 compare androidtestrunner gifbuild pamsumm pnmpsnr gdircolors printafm h5diff ppmtopgm msgcat aomenc gsc pbmtopk zstdcat dbus-update-activation-environment pgmbentley autoheader pamendian imginfo rawtopgm ginstall gif2webp Designer ps2ps2 h5clear dbus-run-session qmlls psicc pcretest gslj gsha224sum p11tool recode-sr-latin ps2epsi glib-gettextize xzcmp shred GraphicsMagick++-config pamtofits gm gouldtoppm giftool cafrun lzcat double pnmtorle androiddeployqt pamoil pbmtoibm23xx jpgicc gsx ompi-clean pgmmedian nettle-hash hwloc-diff yuv-distortion sndfile-info sha384sum pammixinterlace pbmtopsg3 lstopo-no-graphics fc-cache unlz4 analyze gcomm ppmtopj pampop9 gtty dbus-cleanup-sockets pnmremap gcksum hwloc-ps gdbus pcxtoppm gsbj trust unix-lpr.sh zstdmt dbus-uuidgen gexpr gbase64 fc-cat pdftexi2dvi fftw-wisdom-to-conf gwc display mwm ppmtospu ppmcolors ppmtoleaf conjure lzdiff h5redeploy idle3.9 pgmtost4 out123 cask pnmtopnm pgmedge pamvalidate gdbmtool sbigtopgm gnproc aarch64-apple-darwin22-gcc-ar-13 msgexec pyuic5 pamtotiff gcov-tool-13 glib-genmarshal pcre-config ngettext ppmhist base32 qhalf winicontoppm mpg123-strip cooker h5debug pgmmorphconv md2html pamlookup dwebp xbmtopbm pic2tpic ppmtoyuv gptx ppmtomap pgmcrater gtimeout ifnames pnmalias pinky pnmcolormap hostid pammixmulti pgmtopbm texi2any pixeltool qdbus pbmto10x pamtoqoi tjbench ppmtopcx qmleasing qdbuscpp2xml gd2copypal pdf2ps ppmrough qtdiag6 ppmmake x265 gpwd lzmadec ph5diff pnmmercator lua5.4 rgb3toppm fc-match pnmgamma infotopam eps2eps gtail h5repart lzgrep msgunfmt pnmtoplainpnm instancer cpp-13 pamdeinterlace pamgradient h5import pnmsplit tiffcp lprsetup.sh lzmore xvminitoppm pamfile danetool mpiexec nettle-lfib-stream aarch64-apple-darwin22-gcc-nm-13 pnmnlfilt pamtouil gchcon makealias pamtodjvurle aarch64-apple-darwin22-gcc-13 pgmtofs qtdiag pngtogd pnmmargin pamchannel pnmquantall pbmtomacp pbmtext diffmerge import openssl sndfile-metadata-get hb-info pnmpad ppmwheel exrenvmap glogname ppmlabel thinkjettopbm pnmquant pbmupc msgfilter guname winicontopam pamtosrf pamditherbw pbmtoptx pgmnoise pbmtolj gtee lzfgrep pamarith exrheader magick gstty fc-conflist gchgrp gcat glib-mkenums xzmore magick-script asn1Parser hersheydemo hb-view pnmdepth pammosaicknit idn2 ppmquantall cwebp sndfile-interleave sndfile-convert 2to3-3.9 ppmshift yuy2topam scilab mpic++ pamenlarge xzgrep mpifort pamgauss guile pydoc3 pamtotga hb-shape ggroups guile-snarf pbmtoln03 pstopnm ppmtompeg svgtopam lzma qtplugininfo gdbm_load gsleep aarch64-apple-darwin22-g++-13 ortecc qmlscene pamcut jasper gemtopnm pbmtoybm spottopgm pamfix pic2plot sha512sum p11-kit qmlpreview st4topgm sndfile-play gfactor 4channels srftopam pnmmontage pylupdate5 gxpsc rdjpgcom jemalloc.sh python3.11-config ppmbrighten automake tek2plot icontopbm lzegrep mem_image cpack rd-curves qmake6 pamtris transfig msgfmt ppmtoapplevol god gnutls-cli pgmtoppm gprintf guile-config makeinfo affixcompress xzdiff msgattrib gstdbuf imgcmp pcregrep pamtopam pamrubber convert pamtowinicon ppmtoascii gnumfmt xgettext vwebp pamhomography hb-subset cjxl ppmtv ppmtomitsu imgtoppm gio hwloc-annotate qt-cmake xmlif pamtopng gbasenc ppmnorm ppmcolormask pamtable pnmscale h5dump .keepme fc-scan gettextize guild msguniq bmptoppm pnmtojbig install-info qhull gdate /opt/homebrew/sbin: unbound-anchor unbound-checkconf unbound-control unbound unbound-control-setup unbound-host .keepme /usr/local/bin: prlexec dvipdf prl_disk_tool icpc ps2ps gs-noX11 gs icpc-2021.4.0 ps2pdfwr ps2pdf12 diffmerge.sh gsdj pdf2dsc ps2pdf14 gsnd ps2pdf13 prlcore2dmp icc-2021.4 gs-X11 icc pphs gsdj500 ps2ascii prlsrvctl ps2pdf pf2afm prlctl pfbtopfa github gslp prl_convert printafm ps2ps2 gslj ps2epsi gsbj unix-lpr.sh prl_perf_ctl pdf2ps icpc-2021.4 eps2eps lprsetup.sh icc-2021.4.0 /System/Cryptexes/App/usr/bin: safaridriver /usr/bin: ptargrep5.30 uux cpan loads.d htmltree5.30 write lwp-mirror5.30 indent bzip2recover hdiutil top javah tee tidy_changelog xip yapp wsimport bzfgrep qlmanage snmptranslate split chsh xml2man pl2pm5.30 man lpoptions tabs rview lsvfs zgrep dbiprof zmore pod2usage5.30 gcov package-stash-conflicts5.30 dbiprof5.30 vim mandoc_soelim xjc bzmore dyld_info package-stash-conflicts cancel apply bzgrep umask g++ libtool colcrt findrule5.30 ptar5.30 unalias h2xs5.30 mp2bug mkfifo toe hexdump Rez cap_mkdb ictool cmp syscallbypid.d snmpset locate trustcachectl afconvert afclip tidy_changelog5.30 bzegrep instmodsh extcheck javapackager pl compress fddist db_upgrade diagnose-fu yamlpp-load-dump ctags zdiff yamlpp-parse-emit pathchk mesg setregion perlivp yamlpp-highlight5.30 xpath5.30 c++ pod2readme pp vi iofileb.d errinfo zipgrep 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ptardiff5.30 zprint kinit mib2c od bsdtar perl findrule tbtdiagnose mcxquery lwp-download ppdpo crontab reset kextutil par5.30.pl bzcat dbicadmin ex perlbug jvisualvm footprint lsappinfo db_load fwkdp piconv read snmpusm execsnoop pagesize lp base64 ptargrep jar h2ph readlink opensnoop rake rvim jcmd dmc vimtutor prove5.34 perlivp5.34 perldoc5.30 xgettext5.30.pl iperf3-darwin prove newproc.d gencat mdutil znew podchecker mcxrefresh colrm dbilogstrip pagestuff crlrefresh headerdoc2html jrunscript filtercalltree afhash sandbox-exec snmpvacm stapler codecctl fwkpfv sftp wc jps rsync osacompile yamlpp-load5.30 hdxml2manxml gzcat delv thermal pico IOMFB_FDR_Loader shasum comm resolveLinks xcdebug dbicadmin5.30 lpq java bundle gzip yamlpp-events5.30 zipcloak git-upload-archive xml2-config encode_keychange traptoemail gcc smbutil diff ri agvtool cksum corelist5.34 segedit zipnote ptar printf AssetCacheTetheratorUtil column ldapexop ippfind syscallbysysc.d groups dwarfdump ppdc rs spfd 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xctrace pod2man5.30 gzexe json_xs5.30 genstrings at what sdx m4 asa iptab swiftc nfsstat eyapp5.30 uupick ipcs pluginkit as splain5.34 fold gnumake log tmutil checknr certtool vmmap h2xs csrutil shar ldappasswd ResMerger bitesize.d db_checkpoint funzip power_report.sh iosnoop atsutil osalang dirname pod2man enc2xs shasum5.34 iopending ncal chflags derq fg rwbypid.d jmap dscl leaks perl5.34 nbdst mnthome jshell dsexport mdimport parldyn id procsystime cd quota uuto fuser dsimport git-shell ldapsearch command snmp-bridge-mib egrep notifyutil cc dsmemberutil podselect whereis tccutil find jstat zcat unifdefall jlink enc2xs5.30 pridist.d size timesyncanalyse uttype uustat snmpwalk llvm-g++ scp tnameserv true afinfo hidutil ldapadd pwpolicy profiles yacc kswitch xcodebuild tkpp5.30 test-yaml5.30 jobs c89 sudo update_mcdp29xx bioutil tmdiagnose plockstat serialver afida pgrep yes lessecho sdiff afscexpand spfquery5.30 db_deadlock ldapcompare unexpand prove5.30 perlivp5.30 git-upload-pack perldoc5.34 ssh-copy-id fixproc debinhex.pl lorder ranlib ptardiff5.34 javadoc tput fgrep par.pl sigdist.d ppdhtml auval erb dappprof openssl yamlpp-load drutil jinfo lwp-download5.30 splain pmset xmlcatalog zcmp rwsnoop jstatd lpr layerutil snmptest mib2c-update creatbyproc.d fdesetup flex hostinfo jcontrol lpstat SetFile pod2html tar rdoc uptime pidpersec.d schemagen avmediainfo corelist5.30 iptab5.30 cvcp false zegrep memory_pressure pp5.30 uncompress lwp-request ncurses5.4-config sampleproc db_recover dyld_usage nmedit filebyproc.d bison tclsh8.5 jdeps productbuild zipinfo diffstat login db_dump cpuctl cpu_profiler.d which bundler iopattern finger mig sntp klist open GetFileInfo kmutil localedef ruby stringdups htmltree git tr banner leave jconsole paste bzip2 uucp passwd macerror5.30 uuidgen install_name_tool cmpdylib pod2text5.34 zfgrep aea snfsdefrag zipdetails look col dscacheutil syscapturediags lwp-request5.30 zforce lwp-mirror malloc_history cpio h2ph5.34 nohup kcc ulimit rails bspatch hotspot.d cvaffinity xsubpp5.34 gatherheaderdoc ppdi pcap-config jpackage avmetareadwrite gen_bridge_metadata gem spfd5.30 opendiff crc325.30 talk expect jimage lockstat dapptrace xattr w gunzip /bin: cat echo launchctl df pwd test csh wait4path unlink sleep stty date realpath ed expr pax bash kill sh ps link tcsh dd mkdir ksh hostname dash rmdir mv ln ls cp sync zsh chmod rm [ /usr/sbin: dsconfigad htdbm netbiosd postlock systemsoundserverd dseditgroup avbdeviced rpcinfo BootCacheControl weakpass_edit periodic accton wfsctl postalias slapacl edquota sndiskmove pdisk amt lpadmin fdisk sysadminctl networksetup envvars ktutil setquota otctl dnctl mDNSResponder iRATBW.mlmodelc repquota cupsfilter checkgid uuconv sharing vifs ac racoon dsenableroot xsanctl kdcsetup aslmanager screencapture htdigest chat DevToolsSecurity logresolve cvdbset KernelEventAgent gpt scutil ioreg ab traceroute6 pwd_mkdb sysctl appsleepd sshd mDNSResponderHelper authserver appleh13camerad postmulti lsof pkgutil slapindex sc_auth ioclasscount uucico firmwarepasswd rarpd tsig-keygen kadmin.local syslogd taskpolicy BTLEServerAgent filecoordinationd dot_clean PasswordService systemsetup zdump snmpd ndp coreaudiod rpcbind praudit BTLEServer usernoted postkick postcat netstat lpc slapadd krbservicesetup slapconfig rtadvd httxt2dbm distnoted mtree cupsdisable lpmove purge rpc.statd cupsctl DirectoryService notifyd klist_cdhashes dtrace kextcache cupsd dbmmanage languagesetup skywalkctl mkpassdb postconf createhomedir ocspd iostat cvdb sa rpc.lockd uuxqt mkfile softwareupdate unsetpassword zic nfs4mapid postsuper htpasswd rotatelogs universalaccessd audit httpd slapauth slappasswd localemanager asr cvupdatefs bless cvgather xscertadmin visudo uusched dsconfigldap smbdiagnose cfprefsd auditd uuchk cvfsck kextfind diskutil cvfsid sso_util vsdbutil sntpd ddns-confgen ioalloccount uasysdiagnose dev_mkdb hdik slapdn vpnd postqueue setkey repairHomePermissions spindump cupsreject traceroute quotaoff newsyslog postfix cvfsdb snmptrapd chroot arp cupsaccept nvram chown mkextunpack postlog installer pppd httpd-wrapper system_profiler fcgistarter bluetoothd slapschema kadmin spray cvversions kextlibs tcpdump xartutil securityd nlcontrol quotaon spctl vipw gssd slaptest automount scselect envvars-std graphicssession ckksctl lpinfo smbd serverinfo cvmkfs postmap postdrop cupsenable cron systemstats kextstat snquota cvlabel BlueTool sendmail systemkeychain kcditto slapcat ipconfig auditreduce cvadmin WirelessRadioManagerd apachectl htcacheclean /sbin: mount_hfs mount_apfs md5 fsck mount_udf quotacheck mount_cd9660 ping fsck_exfat mount_exfat fsck_udf shutdown route mount_webdav fsck_hfs nfsd reboot nfsiod fsck_cs fsck_apfs fstyp_msdos disklabel mount_lifs mount_msdos fsck_msdos ifconfig halt mount_9p newfs_apfs umount fstyp kextunload mpioutil fstyp_ntfs mount_nfs newfs_udf mount_ftp pfctl mknod fstyp_udf dmesg mount fibreconfig fstyp_hfs newfs_hfs dynamic_pager launchd newfs_exfat apfs_unlockfv apfs_hfs_convert nologin mount_afp mount_virtiofs mount_smbfs mount_tmpfs ping6 kextload mount_cddafs mount_fdesc newfs_msdos mount_acfs mount_devfs /Library/TeX/texbin: optexcount luajittex lollipop twill t1disasm chktex rubikrotation lily-rebuild-pdfs weave mag man ebb prepmx mktexlsr gsftopk upmendex dvibook kpsewhere rumakeindex fontinst cef5conv lacheck httexi lily-image-commands texloganalyser dvilj patgen uptex exceltex pdvitype texconfig-sys xmltex vlna texsis dvipdft urlbst pdfcslatex afm2afm hilatex histretch cefconv uplatex-dev sjisconv tex2xindy musixtex pdfcsplain opl2ofm de-macro bbl2bib ltx2crossrefxml pdftex r-mpost dvitodvi gftodvi dviconcat texluajitc dvipng pdflatex-dev komkindex tex sty2dtx ppltotf yplan eplain eptex lily-glyph-commands htmex texlua htxelatex xasy fmtutil-user wovp2ovf dvilualatex cefsconv context platex allec adhocfilelist kpsetool makejvf texdoctk xelatex-dev vptovf tex4ht texluajit mtxrunjit uplatex musixflx pfarrei mf latexdiff-vc ttfdump etex fig4latex bibexport ttf2tfm latexmk pmpost ctwill pst2pdf wordcount texconfig-dialog luahbtex lwarpmk dvilj2p dviinfox ttf2kotexfont ctanbib cweave bg5+latex pdfatfi ptex2pdf e2pall kpsewhich upbibtex texdiff mathspic kanji-fontmap-creator kanji-config-updmap asy typeoutfileinfo chklref upmpost pdflatex perltex mkt1font cefslatex cjk-gs-integrate chkdvifont dvitype pdfjadetex t1lint jamo-normalize fmtutil-sys wofm2opl dviasm kpsestat pdfxup makedtx pltotf mkindex dvilj6 xetex-unsafe r-pmpost xetex latex ps4pdf multibibliography teckit_compile ttf2afm biburl2doi getmapdl uptftopl llmk contextjit bib2gls texplate match_parens mkjobtexmf updvitomp ps2eps pkfix-helper chkweb arlatex pn2pdf pdfclose xindex clxelatex dosepsbin jadetex a2ping bibzbladd ovf2ovp mfluajit-nowin mpost texosquery-jre5 texhash convbkmk thumbpdf pkfix dvihp hbf2gf xindy.run texcount texmfstart latexrevise cefpdflatex texluac dvicopy ctie pdftex-quiet euptex pdftosrc mf-nowin ctangle omfonts t1asm mflua-nowin cluttex svn-multi mk4ht afm2tfm pdfopen fragmaster ebong ctanify pygmentex texdef luatex cslatex synctex texdirflatten gbkpdflatex xdvipdfmx sjispdflatex makeindex dviluatex mkofm dvipdfmx psbook dvispc csplain ttftotype42 mft t1rawafm fmtutil ctwill-twinx simpdftex depythontex otfinfo latexindent kanji-config-updmap-sys extconv xelatex-unsafe disdvi pdvitomp dvipdfm texliveonfly allneeded htcontext t1testpage biber dv2dt xindy pdfbook2 t1unmac xelatex webquiz kpsepath diadia makeglossaries cef5pdflatex autoinst dvilualatex-dev mkpic splitindex repstopdf otangle mfplain latexfileversion latex-git-log inimf lualatex-dev latex2man ps2pk htxetex l3build hyperxmp-add-bytecount ptftopl ptex gbklatex t1binary bibtex t1dotlessj mktexpk detex htlatex odvicopy dvidvi extractres extractbb tie latexdef tlmgr arara ctan-o-mat rubibtex dvigif gftype ketcindy kpseaccess luacsplain cachepic srcredact dtxgen texlogsieve mmafm pktype platex-dev kpsexpand pktogf msxlint t1reencode vftovp xhlatex ht mendex make4ht ceflatex texlinks pmxchords mptopdf afm2pl mktexmf texlogfilter gftopk ulqda dvilj4l pooltype bg5latex bibmradd aleph wovf2ovp git-latexdiff pdfetex dvi2tty ofm2opl pslatex initex latexpand pamphletangler mkgrkindex mtxrun epsffit listings-ext.sh mktexfmt scor2prt psnup ot2kpx luafindfont allcm pk2bm dvitomp texindy vpl2vpl luatools cef5latex ctwill-refsort luajithbtex bg5+pdflatex dvisvgm tex2aspc bg5conv deweb tlcockpit cfftot1 dviselect odvitype vpl2ovp xindy-arm64.mem otp2ocp latexdiff dt2dv bg5pdflatex mf2pt1 psresize t1mac citeproc epspdf pythontex bibtexu hishrink authorindex texosquery tlshell pdfxmltex includeres t1ascii pdflatexpicscale mfluajit axohelp tangle httex texosquery-jre8 checkcites bibtex8 dvi2fax otftotfm cefspdflatex mmpfb pfb2pfa vpe psselect latex-dev findhyph gregorio ovp2ovf utf8mex mflua purifyeps autosp bundledoc mllatex tex4ebook xdvi-xaw sjislatex rungs dvilj4 ltxfileinfo albatross texconfig updvitype ltximg updmap-user dvips convertgls2bib latex2nemeth pdfjam epstopdf outocp pedigree hitex mkocp kpsereadlink ttf2pk tpic2pdftex kanji-config-updmap-user psjoin m-tx uppltotf xindy-x86_64.mem texdoc bbox dvired latex-papersize makeglossaries-lite t4ht xdvi ps2frag wopl2ofm devnag ctanupload texexec listbib cllualatex lualatex pmxab jfmutil tikztosvg xml2pmx pdfmex tftopl spix mltex amstex pbibtex pstops optex mex bibdoiadd updmap dvipos luaotfload-tool epspdftk updmap-sys r-upmpost mktextfm texfot checklistings rpdfcrop a5toa4 installfont-tl pdfcrop pdfannotextractor /usr/local/share/dotnet: host ThirdPartyNotices.txt shared dotnet packs sdk templates LICENSE.txt /opt/X11/bin: xfs xfsinfo atobm xdpyinfo showrgb xlsfonts editres fonttosfnt xfontsel xclock xmore xman xmag xrefresh fc-list xauth twm cxpm mkfontdir xclipboard png-fix-itxt beforelight ucs2any xterm bdftruncate xsetroot xmessage xcursorgen fc-pattern xkbvleds xkbbell freetype-config Xephyr fc-validate bitmap libpng16-config pngfix fc-query xkbprint luit xhost gtf listres Xorg libpng-config koi8rxterm xpr xstdcmap xgc mkfontscale setxkbmap xinit Xquartz xbacklight xdm xcmsdb xdpr xrdb xlsclients xprop xkeystone xeyes Xvfb Xnest xev startx xkbwatch xscope xfd sessreg xwud lndir xinput xconsole glxinfo sxpm xsetmode fslsfonts xcompmgr xrandr bmtoa xwd xmodmap glxgears fc-cache iceauth cvt xcutsel bdftopcf fc-cat xsetpointer xkbevd quartz-wm xsm appres xset xlsatoms fc-match oclock resize showfont xditview xwininfo xvinfo xcalc fc-conflist xgamma viewres ico X xedit smproxy xkill xkbcomp xload font_cache xmh xlogo fstobdf uxterm fc-scan Warning accessing ~/.dotnet/tools gives errors: [Errno 2] No such file or directory: '~/.dotnet/tools' /Library/Apple/usr/bin: rvictl /Library/Frameworks/Mono.framework/Versions/Current/Commands: mono-api-info resgen ikdasm xsp4 genxs cert-sync msbuild mdoc sgen aprofutil xsp2 csi dbsessmgr2 mdoc-update xbuild al dbsessmgr4 ir disco lc signcode sqlmetal irw mono-shlib-cop ipy64 mono-configuration-crypto macpack soapsuds dtd2rng asp-state mdoc-export-msxdoc mono-service2 mono-find-provides gapi2-codegen wsdl2 monodocs2slashdoc ccrewrite mdoc-export-html ipyw64 fastcgi-mono-server4 al2 cert2spc dtd2xsd fsharpi cccheck mod-mono-server monodocer vbnc2 certmgr mono-symbolicate dbsessmgr mconfig mono64 fastcgi-mono-server2 mono-gdb.py irw64 pdb2mdb mono-heapviz mod-mono-server4 fastcgi-mono-server mono-service peverify asp-state4 sqlsharp monolinker vbnc mprof-report mod-mono-server2 mono-xmltool asp-state2 mdoc-assemble sn ipy ClassInitGenerator mono-test-install csc chktrust nuget monop mozroots svcutil mono gapi2-parser mono-sgen httpcfg setreg csharp mono-find-requires mdassembler caspol mkbundle gacutil monodis illinkanalyzer mdoc-validate xsd mdvalidater monodocs2html xsp makecert resgen2 wsdl permview fsharpc ipyw mono-api-html installvst mono-cil-strip IronRuby.Tests secutil mono32 mod ilasm ir64 mcs gacutil2 dmcs monop2 vbc gapi2-fixup pedump Warning accessing /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin gives errors: [Errno 2] No such file or directory: '/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin' Warning accessing /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin gives errors: [Errno 2] No such file or directory: '/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin' Warning accessing /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin gives errors: [Errno 2] No such file or directory: '/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin' .: PKG-INFO CODE_OF_CONDUCT.md GNUmakefile gmakefile CTAGS .DS_Store LICENSE RDict.log configure config petscdir.mk makefile configure.log CONTRIBUTING arch-darwin-c-opt include configure.log.bkp configtest.mod TAGS setup.py .clang-format lib .nagged interfaces share gmakefile.test src /Applications/Julia-1.9.app/Contents/Resources/julia/bin: julia ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(/Users/pjt/Software/PETSc/petsc-3.19.5/config/BuildSystem/config/framework.py:1070) Set alternative directory external packages are built in serialEvaluation: initial cxxDialectRanges ('c++11', 'c++20') serialEvaluation: child SuiteSparse raised minimum cxx dialect version to c++11 serialEvaluation: new cxxDialectRanges ('c++11', 'c++20') child config.utilities.macosFirewall took 0.000034 seconds ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(/Users/pjt/Software/PETSc/petsc-3.19.5/config/BuildSystem/config/utilities/debuggers.py:20) Find a default debugger and determine its arguments Checking for program /opt/homebrew/bin/lldb...not found Checking for program /opt/homebrew/sbin/lldb...not found Checking for program /usr/local/bin/lldb...not found Checking for program /System/Cryptexes/App/usr/bin/lldb...not found Checking for program /usr/bin/lldb...found Defined make macro "LLDB" to "/usr/bin/lldb" Defined "USE_DEBUGGER" to ""lldb"" Checking for program /opt/homebrew/bin/dsymutil...not found Checking for program /opt/homebrew/sbin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /System/Cryptexes/App/usr/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...found Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Defined "DO_NOT_SWAP_CHILD_FOR_DEBUGGER" to "1" child config.utilities.debuggers took 0.001697 seconds ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(/Users/pjt/Software/PETSc/petsc-3.19.5/config/PETSc/options/petscdir.py:22) Checks PETSC_DIR and sets if not set PETSC_VERSION_RELEASE of 1 indicates the code is from a release branch or a branch created from a release branch. Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 19 #define PETSC_VERSION_SUBMINOR 5 #define PETSC_VERSION_DATE "Aug 30, 2023" #define PETSC_VERSION_GIT "v3.19.5" #define PETSC_VERSION_DATE_GIT "2023-08-30 14:13:04 -0500" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir took 0.002270 seconds ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(/Users/pjt/Software/PETSc/petsc-3.19.5/config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath took 0.000120 seconds ============================================================================================= TESTING: configureGit from config.sourceControl(/Users/pjt/Software/PETSc/petsc-3.19.5/config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /opt/homebrew/bin/git...not found Checking for program /opt/homebrew/sbin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /System/Cryptexes/App/usr/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.39.3 (Apple Git-145) ============================================================================================= TESTING: configureMercurial from config.sourceControl(/Users/pjt/Software/PETSc/petsc-3.19.5/config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /opt/homebrew/bin/hg...not found Checking for program /opt/homebrew/sbin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /System/Cryptexes/App/usr/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /sbin/hg...not found Checking for program /Library/TeX/texbin/hg...not found Checking for program /usr/local/share/dotnet/hg...not found Checking for program /opt/X11/bin/hg...not found Checking for program ~/.dotnet/tools/hg...not found Checking for program /Library/Apple/usr/bin/hg...not found Checking for program /Library/Frameworks/Mono.framework/Versions/Current/Commands/hg...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin/hg...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin/hg...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin/hg...not found Checking for program ./hg...not found Checking for program /Applications/Julia-1.9.app/Contents/Resources/julia/bin/hg...not found Checking for program /Users/pjt/Software/PETSc/petsc-3.19.5/lib/petsc/bin/win32fe/hg...not found child config.sourceControl took 0.225097 seconds ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(/Users/pjt/Software/PETSc/petsc-3.19.5/config/PETSc/options/petscclone.py:20) Determine if PETSc was obtained via git or a tarball This is a tarball installation child PETSc.options.petscclone took 0.000713 seconds ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(/Users/pjt/Software/PETSc/petsc-3.19.5/config/PETSc/options/arch.py:29) Forms the arch as GNU's configure would form it ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(/Users/pjt/Software/PETSc/petsc-3.19.5/config/PETSc/options/arch.py:42) Checks if PETSC_ARCH is set and sets it if not set No previous hashfile found Setting hashfile: arch-darwin-c-opt/lib/petsc/conf/configure-hash Deleting configure hash file: arch-darwin-c-opt/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-darwin-c-opt/lib/petsc/conf/configure-hash child PETSc.options.arch took 0.029176 seconds ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(/Users/pjt/Software/PETSc/petsc-3.19.5/config/PETSc/options/installDir.py:31) Set installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/Users/pjt/Software/PETSc/petsc-3.19.5/arch-darwin-c-opt" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(/Users/pjt/Software/PETSc/petsc-3.19.5/config/PETSc/options/installDir.py:76) Save the configure options in a script in PETSC_ARCH/lib/petsc/conf so the same configure may be easily re-run ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(/Users/pjt/Software/PETSc/petsc-3.19.5/config/PETSc/options/installDir.py:68) Remove all the files from configuration directory for this PETSC_ARCH, from --with-clean option ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(/Users/pjt/Software/PETSc/petsc-3.19.5/config/PETSc/options/installDir.py:52) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /Users/pjt/Software/PETSc/petsc-3.19.5/arch-darwin-c-opt/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(/Users/pjt/Software/PETSc/petsc-3.19.5/config/PETSc/options/installDir.py:90) If --with-clean was requested but restoring the reconfigure file was requested then restore it child PETSc.options.installDir took 0.000877 seconds ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/Users/pjt/Software/PETSc/petsc-3.19.5/config/PETSc/options/externalpackagesdir.py:15) Set location where external packages will be downloaded to ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/Users/pjt/Software/PETSc/petsc-3.19.5/config/PETSc/options/externalpackagesdir.py:23) Remove all downloaded external packages, from --with-clean child PETSc.options.externalpackagesdir took 0.000209 seconds ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(/Users/pjt/Software/PETSc/petsc-3.19.5/config/PETSc/options/languages.py:28) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages took 0.000408 seconds ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(/Users/pjt/Software/PETSc/petsc-3.19.5/config/BuildSystem/config/setCompilers.py:2696) Remove compilers from the shell environment so they do not interfere with testing ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(/Users/pjt/Software/PETSc/petsc-3.19.5/config/BuildSystem/config/setCompilers.py:2713) Set configure compilers from the environment, from -with-environment-variables ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(/Users/pjt/Software/PETSc/petsc-3.19.5/config/BuildSystem/config/setCompilers.py:2666) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(/Users/pjt/Software/PETSc/petsc-3.19.5/config/BuildSystem/config/setCompilers.py:2687) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(/Users/pjt/Software/PETSc/petsc-3.19.5/config/BuildSystem/config/setCompilers.py:725) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPFLAGS to Initialized HIPFLAGS to Initialized LDFLAGS to Initialized SYCLFLAGS to Initialized SYCLFLAGS to Initialized SYCLC_LINKER_FLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to Initialized SYCLPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(/Users/pjt/Software/PETSc/petsc-3.19.5/config/BuildSystem/config/setCompilers.py:1419) Checking for program /opt/homebrew/bin/mpincc...not found Checking for program /opt/homebrew/sbin/mpincc...not found Checking for program /usr/local/bin/mpincc...not found Checking for program /System/Cryptexes/App/usr/bin/mpincc...not found Checking for program /usr/bin/mpincc...not found Checking for program /bin/mpincc...not found Checking for program /usr/sbin/mpincc...not found Checking for program /sbin/mpincc...not found Checking for program /Library/TeX/texbin/mpincc...not found Checking for program /usr/local/share/dotnet/mpincc...not found Checking for program /opt/X11/bin/mpincc...not found Checking for program ~/.dotnet/tools/mpincc...not found Checking for program /Library/Apple/usr/bin/mpincc...not found Checking for program /Library/Frameworks/Mono.framework/Versions/Current/Commands/mpincc...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin/mpincc...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin/mpincc...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin/mpincc...not found Checking for program ./mpincc...not found Checking for program /Applications/Julia-1.9.app/Contents/Resources/julia/bin/mpincc...not found Checking for program /Users/pjt/Software/PETSc/petsc-3.19.5/lib/petsc/bin/win32fe/mpincc...not found Checking for program /opt/homebrew/bin/mpicc...found Defined make macro "CC" to "mpicc" Executing: mpicc -c -o /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.o -I/var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -c -o /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.o -I/var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.o Executing: mpicc -c -o /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.o -I/var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library 'petsc-ufod4vtr9mqHvKIQiVAm' not found clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library 'petsc-ufod4vtr9mqHvKIQiVAm' not found clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output after filtering: ld: library 'petsc-ufod4vtr9mqHvKIQiVAm' not found clang: error: linker command failed with exit code 1 (use -v to see invocation) ======== Checking running linked program Executing: mpicc -c -o /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.o -I/var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.o Testing executable /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest to see if it can be run Executing: /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest Executing: mpicc --version stdout: Apple clang version 15.0.0 (clang-1500.0.40.1) Target: arm64-apple-darwin22.6.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin Executing: mpicc -v | head -n 20 Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(/Users/pjt/Software/PETSc/petsc-3.19.5/config/BuildSystem/config/setCompilers.py:1462) Locate a functional C preprocessor Checking for program /opt/homebrew/bin/mpicc...found Defined make macro "CPP" to "mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.c Preprocess output before filtering: Preprocess output after filtering: ============================================================================================= TESTING: checkCxxCompiler from config.setCompilers(/Users/pjt/Software/PETSc/petsc-3.19.5/config/BuildSystem/config/setCompilers.py:1744) Locate a functional Cxx compiler Checking for program /opt/homebrew/bin/mpinc++...not found Checking for program /opt/homebrew/sbin/mpinc++...not found Checking for program /usr/local/bin/mpinc++...not found Checking for program /System/Cryptexes/App/usr/bin/mpinc++...not found Checking for program /usr/bin/mpinc++...not found Checking for program /bin/mpinc++...not found Checking for program /usr/sbin/mpinc++...not found Checking for program /sbin/mpinc++...not found Checking for program /Library/TeX/texbin/mpinc++...not found Checking for program /usr/local/share/dotnet/mpinc++...not found Checking for program /opt/X11/bin/mpinc++...not found Checking for program ~/.dotnet/tools/mpinc++...not found Checking for program /Library/Apple/usr/bin/mpinc++...not found Checking for program /Library/Frameworks/Mono.framework/Versions/Current/Commands/mpinc++...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin/mpinc++...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin/mpinc++...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin/mpinc++...not found Checking for program ./mpinc++...not found Checking for program /Applications/Julia-1.9.app/Contents/Resources/julia/bin/mpinc++...not found Checking for program /Users/pjt/Software/PETSc/petsc-3.19.5/lib/petsc/bin/win32fe/mpinc++...not found Checking for program /opt/homebrew/bin/mpinc++...not found Checking for program /opt/homebrew/sbin/mpinc++...not found Checking for program /usr/local/bin/mpinc++...not found Checking for program /System/Cryptexes/App/usr/bin/mpinc++...not found Checking for program /usr/bin/mpinc++...not found Checking for program /bin/mpinc++...not found Checking for program /usr/sbin/mpinc++...not found Checking for program /sbin/mpinc++...not found Checking for program /Library/TeX/texbin/mpinc++...not found Checking for program /usr/local/share/dotnet/mpinc++...not found Checking for program /opt/X11/bin/mpinc++...not found Checking for program ~/.dotnet/tools/mpinc++...not found Checking for program /Library/Apple/usr/bin/mpinc++...not found Checking for program /Library/Frameworks/Mono.framework/Versions/Current/Commands/mpinc++...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin/mpinc++...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin/mpinc++...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin/mpinc++...not found Checking for program ./mpinc++...not found Checking for program /Applications/Julia-1.9.app/Contents/Resources/julia/bin/mpinc++...not found Checking for program /Users/pjt/Software/PETSc/petsc-3.19.5/lib/petsc/bin/win32fe/mpinc++...not found Checking for program /opt/homebrew/bin/mpinc++...not found Checking for program /opt/homebrew/sbin/mpinc++...not found Checking for program /usr/local/bin/mpinc++...not found Checking for program /System/Cryptexes/App/usr/bin/mpinc++...not found Checking for program /usr/bin/mpinc++...not found Checking for program /bin/mpinc++...not found Checking for program /usr/sbin/mpinc++...not found Checking for program /sbin/mpinc++...not found Checking for program /Library/TeX/texbin/mpinc++...not found Checking for program /usr/local/share/dotnet/mpinc++...not found Checking for program /opt/X11/bin/mpinc++...not found Checking for program ~/.dotnet/tools/mpinc++...not found Checking for program /Library/Apple/usr/bin/mpinc++...not found Checking for program /Library/Frameworks/Mono.framework/Versions/Current/Commands/mpinc++...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin/mpinc++...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin/mpinc++...not found Checking for program /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin/mpinc++...not found Checking for program ./mpinc++...not found Checking for program /Applications/Julia-1.9.app/Contents/Resources/julia/bin/mpinc++...not found Checking for program /Users/pjt/Software/PETSc/petsc-3.19.5/lib/petsc/bin/win32fe/mpinc++...not found Checking for program /opt/homebrew/bin/mpicxx...found Defined make macro "CXX" to "mpicxx" Executing: mpicxx -c -o /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.o -I/var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -c -o /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.o -I/var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.o Executing: mpicxx -c -o /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.o -I/var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library 'petsc-ufod4vtr9mqHvKIQiVAm' not found clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library 'petsc-ufod4vtr9mqHvKIQiVAm' not found clang: error: linker command failed with exit code 1 (use -v to see invocation) Linker output after filtering: ld: library 'petsc-ufod4vtr9mqHvKIQiVAm' not found clang: error: linker command failed with exit code 1 (use -v to see invocation) ======== Checking running linked program Executing: mpicxx -c -o /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.o -I/var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest.o Testing executable /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest to see if it can be run Executing: /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/cp/hp03bjkx0hs701n8_5kk46_40000gn/T/petsc-2q3x6kyb/config.setCompilers/conftest Executing: mpicxx --version stdout: Apple clang version 15.0.0 (clang-1500.0.40.1) Target: arm64-apple-darwin22.6.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin ============================================================================================= TESTING: checkDeviceHostCompiler from config.setCompilers(/Users/pjt/Software/PETSc/petsc-3.19.5/config/BuildSystem/config/setCompilers.py:751) Set the host compiler (HC) of the device compiler (DC) to the HC unless the DC already explicitly sets its HC. This may be needed if the default HC used by the DC is ancient and PETSc uses a different HC (e.g., through --with-cxx=...). Executing: mpicxx --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --amdgpu-arch-tool= Tool used for detecting AMD GPU arch in the system. --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|sarif-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Search $prefix$file for executables, libraries, and data files. If $prefix is a directory, search $prefix/$file -b Pass -b to the linker on AIX -cc1-args pass cc1 options to depscan afterwards -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. Executing: mpicxx --help stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --amdgpu-arch-tool= Tool used for detecting AMD GPU arch in the system. --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|sarif-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Search $prefix$file for executables, libraries, and data files. If $prefix is a directory, search $prefix/$file -b Pass -b to the linker on AIX -cc1-args pass cc1 options to depscan afterwards -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-ext= OpenCL only. Enable or disable OpenCL extensions/optional features. The argument is a comma-separated sequence of one or more extension names, each prefixed by '+' or '-'. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt OpenCL only. Specify that single precision floating-point divide and sqrt used in the program source are correctly rounded. -cl-kernel-arg-info OpenCL only. Generate kernel argument metadata. -cl-mad-enable OpenCL only. Allow use of less precise MAD computations in the generated binary. -cl-no-signed-zeros OpenCL only. Allow use of less precise no signed zeros computations in the generated binary. -cl-no-stdinc OpenCL only. Disables all standard includes containing non-native compiler types and functions. -cl-opt-disable OpenCL only. This option disables all optimizations. By default optimizations are enabled. -cl-single-precision-constant OpenCL only. Treat double precision floating-point constant as single precision constant. -cl-std= OpenCL language standard to compile for. -cl-strict-aliasing OpenCL only. This option is added for compatibility with OpenCL 1.0. -cl-uniform-work-group-size OpenCL only. Defines that the global work-size be a multiple of the work-group size specified to clEnqueueNDRangeKernel -cl-unsafe-math-optimizations OpenCL only. Allow unsafe floating-point optimizations. Also implies -cl-no-signed-zeros and -cl-mad-enable. --config= Specify configuration file --cuda-compile-host-device Compile CUDA code for both host and device (default). Has no effect on non-CUDA compilations. --cuda-device-only Compile CUDA code for device only --cuda-feature= Manually specify the CUDA feature to use --cuda-host-only Compile CUDA code for host only. Has no effect on non-CUDA compilations. --cuda-include-ptx= Include PTX for the following GPU architecture (e.g. sm_35) or 'all'. May be specified more than once. --cuda-noopt-device-debug Enable device-side debug info generation. Disables ptxas optimizations. --cuda-path-ignore-env Ignore environment variables to detect CUDA installation --cuda-path= CUDA installation path -cuid= An ID for compilation unit, which should be the same for the same compilation unit but different for different compilation units. It is used to externalize device-side static variables for single source offloading languages CUDA and HIP so that they can be accessed by the host code of the same compilation unit. -cxx-isystem Add directory to the C++ SYSTEM include search path -C Include comments in preprocessed output -c Only run preprocess, compile, and assemble steps -darwin-target-variant-triple Specify the darwin target variant triple -darwin-target-variant Generate code for an additional runtime variant of the deployment target -dD Print macro definitions in -E mode in addition to normal output -dependency-dot Filename to write DOT-formatted header dependencies to -dependency-file Filename (or -) to write dependency output to -dI Print include directives in -E mode in addition to normal output -dM Print macro definitions in -E mode instead of normal output -dsym-dir Directory to output dSYM's (if any) to -dump-depscan-tree= emit the CAS identifier for the tree instead of the full -cc1 -D = Define to (or 1 if omitted) -emit-ast Emit Clang AST files for source inputs -emit-interface-stubs Generate Interface Stub Files. -emit-llvm Use the LLVM representation for assembler and object files -emit-merged-ifs Generate Interface Stub Files, emit merged text not binary. --emit-static-lib Enable linker job to emit a static library. --end-no-unused-arguments Start emitting warnings for unused driver arguments --extract-api-ignores= Comma separated list of files containing a new line separated list of API symbols to ignore when extracting API information. -extract-api Extract API information -E Only run the preprocessor -faapcs-bitfield-load Follows the AAPCS standard that all volatile bit-field write generates at least one load. (ARM only). -faapcs-bitfield-width Follow the AAPCS standard requirement stating that volatile bit-field width is dictated by the field container type. (ARM only). -faddrsig Emit an address-significance table -falign-loops= N must be a power of two. Align loops to the boundary -faligned-allocation Enable C++17 aligned allocation functions -fallow-editor-placeholders Treat editor placeholders as valid source code -faltivec-src-compat= Source-level compatibility for Altivec vectors (for PowerPC targets). This includes results of vector comparison (scalar for 'xl', vector for 'gcc') as well as behavior when initializing with a scalar (splatting for 'xl', element zero only for 'gcc'). For 'mixed', the compatibility is as 'gcc' for 'vector bool/vector pixel' and as 'xl' for other types. Current default is 'mixed'. -fansi-escape-codes Use ANSI escape codes for diagnostics -fapinotes-cache-path= Does nothing; API notes are no longer cached separately from modules -fapinotes-modules Enable module-based external API notes support -fapinotes-swift-version= Specify the Swift version to use when filtering API notes -fapinotes Enable external API notes support -fapple-kext Use Apple's kernel extensions ABI -fapple-link-rtlib Force linking the clang builtins runtime library -fapple-pragma-pack Enable Apple gcc-compatible #pragma pack handling -fapplication-extension Restrict code to those available for App Extensions -fapprox-func Allow certain math function calls to be replaced with an approximately equivalent calculation -fasync-exceptions Enable EH Asynchronous exceptions -fbasic-block-sections= Place each function's basic blocks in unique sections (ELF Only) -fbinutils-version= Produced object files can use all ELF features supported by this binutils version and newer. If -fno-integrated-as is specified, the generated assembly will consider GNU as support. 'none' means that all ELF features can be used, regardless of binutils support. Defaults to 2.26. -fblocks Enable the 'blocks' language feature -fborland-extensions Accept non-standard constructs supported by the Borland compiler -fbranch-target-identification Emit branch target identification instructions for indirect branch destinations -fbuild-session-file= Use the last modification time of as the build session timestamp -fbuild-session-timestamp=