Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ ================================================================================ Starting configure run at Thu, 22 Jun 2023 11:38:41 +0800 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 COPTFLAGS=-O2 CXXOPTFLAGS=-O2 FOPTFLAGS=-O2 --with-blaslapack-dir=/public/software/compiler/intel/2021.3.0/mkl --download-hypre=/public/home/test123/chenjh/software/hypre-2.19.0.tar.gz --prefix=/public/home/test123/chenjh/software/petsc PETSC_ARCH=intel_2020 PETSC_DIR=/public/home/test123/chenjh/software/petsc-3.14.6 Working directory: /public/home/test123/chenjh/software/petsc-3.14.6 Machine platform: ('Linux', 'admin1', '3.10.0-1160.el7.x86_64', '#1 SMP Mon Oct 19 16:18:59 UTC 2020', 'x86_64', 'x86_64') Python version: 2.7.5 (default, Oct 14 2020, 14:45:30) [GCC 4.8.5 20150623 (Red Hat 4.8.5-44)] ================================================================================ ================================================================================ TEST configureExternalPackagesDir from config.framework(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/framework.py:932) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:932) child config.utilities.macosFirewall 0.000006 ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/utilities/debuggers.py:21) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking for program /public/software/compiler/gcc/7.3.1/bin/gdb...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/gdb...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/gdb...not found Checking for program /public/software/compiler/intel/2021.3.0/bin/intel64/gdb...not found Checking for program /public/software/compiler/intel/2021.3.0/mkl/bin/intel64/gdb...not found Checking for program /usr/lib64/qt-3.3/bin/gdb...not found Checking for program /opt/gridview/pmix/bin/gdb...not found Checking for program /opt/gridview/pmix/sbin/gdb...not found Checking for program /public/home/test123/perl5/bin/gdb...not found Checking for program /public/software/apps/module/bin/gdb...not found Checking for program /opt/gridview/slurm/bin/gdb...not found Checking for program /opt/gridview/slurm/sbin/gdb...not found Checking for program /opt/gridview/munge/bin/gdb...not found Checking for program /opt/gridview/munge/sbin/gdb...not found Checking for program /opt/gridview/clusquota//bin/gdb...not found Checking for program /opt/gridview/clusquota//sbin/gdb...not found Checking for program /opt/gridview/clusconf/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux child config.utilities.debuggers 0.030086 ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/public/home/test123/chenjh/software/petsc-3.14.6/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 14 #define PETSC_VERSION_SUBMINOR 6 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "Mar 30, 2021" #define PETSC_VERSION_GIT "v3.14.6" #define PETSC_VERSION_DATE_GIT "2021-03-30 11:36:51 -0500" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.005805 ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/public/home/test123/chenjh/software/petsc-3.14.6/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000447 ================================================================================ TEST configureGit from config.sourceControl(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /public/software/compiler/gcc/7.3.1/bin/git...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/git...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/git...not found Checking for program /public/software/compiler/intel/2021.3.0/bin/intel64/git...not found Checking for program /public/software/compiler/intel/2021.3.0/mkl/bin/intel64/git...not found Checking for program /usr/lib64/qt-3.3/bin/git...not found Checking for program /opt/gridview/pmix/bin/git...not found Checking for program /opt/gridview/pmix/sbin/git...not found Checking for program /public/home/test123/perl5/bin/git...not found Checking for program /public/software/apps/module/bin/git...not found Checking for program /opt/gridview/slurm/bin/git...not found Checking for program /opt/gridview/slurm/sbin/git...not found Checking for program /opt/gridview/munge/bin/git...not found Checking for program /opt/gridview/munge/sbin/git...not found Checking for program /opt/gridview/clusquota//bin/git...not found Checking for program /opt/gridview/clusquota//sbin/git...not found Checking for program /opt/gridview/clusconf/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Running Executable WITHOUT threads to time it out Executing: git --version stdout: git version 1.8.3.1 ================================================================================ TEST configureMercurial from config.sourceControl(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /public/software/compiler/gcc/7.3.1/bin/hg...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/hg...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/hg...not found Checking for program /public/software/compiler/intel/2021.3.0/bin/intel64/hg...not found Checking for program /public/software/compiler/intel/2021.3.0/mkl/bin/intel64/hg...not found Checking for program /usr/lib64/qt-3.3/bin/hg...not found Checking for program /opt/gridview/pmix/bin/hg...not found Checking for program /opt/gridview/pmix/sbin/hg...not found Checking for program /public/home/test123/perl5/bin/hg...not found Checking for program /public/software/apps/module/bin/hg...not found Checking for program /opt/gridview/slurm/bin/hg...not found Checking for program /opt/gridview/slurm/sbin/hg...not found Checking for program /opt/gridview/munge/bin/hg...not found Checking for program /opt/gridview/munge/sbin/hg...not found Checking for program /opt/gridview/clusquota//bin/hg...not found Checking for program /opt/gridview/clusquota//sbin/hg...not found Checking for program /opt/gridview/clusconf/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /usr/local/sbin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /public/home/test123/.local/bin/hg...not found Checking for program /public/home/test123/bin/hg...not found Checking for program /public/home/test123/chenjh/software/petsc-3.14.6/lib/petsc/bin/win32fe/hg...not found Unable to find programs ['hg'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['c++', 'gcc-nm', 'x86_64-pc-linux-gnu-gcc-ar', 'gfortran', 'x86_64-pc-linux-gnu-gcc-nm', 'x86_64-pc-linux-gnu-c++', 'gcov-tool', 'x86_64-pc-linux-gnu-gcc', 'gcov-dump', 'x86_64-pc-linux-gnu-gcc-ranlib', 'gcc-ranlib', 'cpp', 'x86_64-pc-linux-gnu-gfortran', 'gcc', 'gcov', 'x86_64-pc-linux-gnu-gcc-7', 'gcc-ar', 'x86_64-pc-linux-gnu-g++', 'g++'] ['fi_pingpong', 'fi_info'] ['mpif90', 'mpicc', 'IMB-NBC', 'mpiicpc', 'impi_info', 'mpigxx', 'hydra_pmi_proxy', 'IMB-MPI1', 'mpicxx', 'tune', 'mpiexec.hydra', 'mpiexec', 'mpitune_fast', 'cpuinfo', 'mpiicc', 'hydra_bstrap_proxy', 'tune_fast', 'hydra_nameserver', 'mpifc', 'IMB-MPI1-GPU', 'IMB-P2P', 'mpirun', 'mpitune', 'mpif77', 'IMB-RMA', 'mpiifort', 'mpigcc', 'IMB-MT'] ['xild.cfg', 'proforder', 'icc.cfg', 'map_opts', 'fortcom', 'mcpcom', 'icc', 'ifort.cfg', 'fpp', 'tselect', 'icpc', 'libcilkrts.so.5', 'xild', 'xiar', 'xiar.cfg', 'profmerge', 'profmergesampling', 'profdcg', 'codecov', 'ifort', 'icpc.cfg'] ['mkl_link_tool'] [] ['pps', 'pmix_info', 'plookup', 'pevent'] Warning accessing /opt/gridview/pmix/sbin gives errors: [Errno 2] No such file or directory: '/opt/gridview/pmix/sbin' Warning accessing /public/home/test123/perl5/bin gives errors: [Errno 2] No such file or directory: '/public/home/test123/perl5/bin' ['modulecmd', 'add.modules', 'mkroot', 'envml'] ['sbatch', 'sinfo', 'sattach', 'strigger', 'sdiag', 'sprio', 'pestat', 'salloc', 'smap', 'sreport', 'sstat', 'sacctmgr', 'scontrol', 'squeue', 'srun', 'sshare', 'scancel', 'sbcast', 'sacct'] ['slurmstepd', 'slurmd', 'slurmctld', 'slurmdbd'] ['unmunge', 'remunge', 'munge'] ['munged'] ['gdeposit', 'grmalloc', 'glsmachine', 'grmjob', 'gcharge', 'greserve', 'gbalance', 'gusage', 'gchuser', 'grmmachine', 'gchjob', 'glstxn', 'gmkuser', 'gtransfer', 'gmkproject', 'grmuser', 'gchaccount', 'mybalance', 'glsalloc', 'gchmachine', 'goldsh', 'gquote', 'glsjob', 'grmquote', 'glsproject', 'gchres', 'gmkmachine', 'gchpasswd', 'gstatement', 'gchproject', 'grmproject', 'gchalloc', 'glsres', 'gchquote', 'gmkjob', 'gmkaccount', 'grmaccount', 'grmres', 'grefund', 'glsaccount', 'gwithdraw', 'glsuser', 'glsquote'] ['goldd', 'sqlite'] ['rpdcp', 'pdsh', 'clusconf-uninstall', 'sshpass', 'clusbak', 'clusconf', 'dshbak', 'pdcp'] [] ['gcov', 'base64', 'audit2allow', 'findsmb', 'sum', 'gvfs-rm', 'nl-route-add', 'red', 'ps2epsi', 'nepomuk-rcgen', 'ncursesw5-config', 'db_upgrade', 'upower', 'iecset', 'imsettings-switch', 'pmieconf', 'h5repart', 'onto2vocabularyclass', 'pkill', 'sg_decode_sense', 'lsusb.py', 'ciptool', 'ypwhich', 'ps2pdf13', 'pomdump', 'journalctl', 'dbus-update-activation-environment', 'setpriv', 'compile_et', 'abrt-action-analyze-python', 'akregatorstorageexporter', 'firewall-config', 'lpr.cups', 'zcat', 'ping', 'rnano', 'mcookie', 'umount', 'git-shell', 'scrollkeeper-uninstall', 'mlxfwstress', 'mkhybrid', 'charmap', 'cifsdd', 'dltest', 'pg_dumpall', 'fusermount', 'nl-neightbl-list', 'akonadi_agent_launcher', 'mapscrn', 'bashbug-64', 'qdoc', 'analog', 'dbpmda', 'python2.7-config', 'qtplugininfo-qt5', 'sudoreplay', 'kill', 'sg_safte', 'mlxtrace_ext', 'dumpiso', 'dump2slvl.pl', 'db47_deadlock', 'abrt-action-save-kernel-data', 'gmt', 'ucx_perftest', 'xsetwacom', 'xzmore', 'sg_verify', 'systemd-hwdb', 'coverage2', 'xdg-desktop-icon', 'evolution', 'genisoimage', 'ktimetracker', 'gnome-tweaks', 'mlnx_conf_mgr.sh', 'cgcreate', 'pscp', 'msguniq', 'hangul', 'xsetroot', '8211view', 'ypcat', 'pmdate', 'isogmt', 'mountpoint', 'more', 'btt', 'mkmanifest', 'alsatplg', 'fc-match', 'lsusb', 'meinproc4_simple', 'snice', 'gdal_grid', 'touch', 'dbus-binding-tool', 'anaconda-cleanup', 'mac2unix', 'spent', 'mv', 'gucharmap', 'vmware-namespace-cmd', 'qdbusviewer-qt5', 'hwloc-ls', 'mcopy', 'tailf', 'panelctl', 'byacc', 'brltty-ttb', 'sftp', 'sane-find-scanner', 'xrefresh', 'bittorrent-console', 'pkla-check-authorization', 'kbackgroundsnapshot', 'slabtop', 'sim_client', 'tcumttest', 'gst-feedback', 'sbcdec', 'sg_get_config', 'piconv', 'teamdctl', 'db_verify', 'sg_ses', 'nfs4_editfacl', 'rdma_client', 'gnatclean', 'pkcheck', 'gdalsrsinfo', 'accountwizard', 'nl-neigh-delete', 'pmprobe', 'kde4-config', 'boltctl', 'cancel', 'bootctl', 'unpack200', 'mstresourcedump', 'pldd', 'akonadi_nepomuktag_resource', 'kmimetypefinder', 'ranlib', 'sg_ident', 'catman', 'ib_atomic_lat', 'pg_receivexlog', 'merge', 'gvfs-mime', 'i2c', 'ksshaskpass', 'dvd+rw-booktype', 'si_mkautoinstallcd', 'locale', 'gdalserver', 'gresource', 'targetclid', 'ksu', 'createdb', 'akonadi_kdeaccounts_resource', 'setserial', 'zforce', 'xzgrep', 'uz', 'ypchsh', 'ptardiff', 'debuginfo-install', 'cdda2ogg', 'dvd-ram-control', 'auvirt', 'pm-is-supported', 'printf', 'purple-remote', 'envsubst', 'gdaladdo', 'xml_merge', 'okular', 'sopranocmd', 'pax', 'groff', 'ffmpeg', 'sessreg', 'telepathy-gabble-xmpp-console', 'on_ac_power', 'eu-ar', 'ssh-keyscan', 'dwp', 'lpstat.cups', 'kstart', 'xzdiff', 'canberra-boot', 'hciattach', 'withsctp', 'sss_ssh_knownhostsproxy', 'pmlc', 'kwin', 'cscope', 'gnome-keyring-3', 'xmlpatternsvalidator-qt5', 'rcsdiff', 'dc', 'sgmlspl', 'cpanp', 'setfacl', 'start-pulseaudio-x11', 'csplit', 'pmap', 'cancel.cups', 'ibus-setup', 'funzip', 'modifyrepo', 'VGAuthService', 'ldns-zsplit', 'mstflint', 'mcd', 'zipdetails', 'chsh', 'id', 'pmjson', 'egrep', 'cpancover', 'kblankscrn.kss', 'stty', 'rmail', 'kde-mv', 'mlxreg', 'aclocal', 'abrt-action-analyze-oops', 'gcc', 'ypmatch', 'pstree', 'hivexget', 'rescan-scsi-bus.sh', 'dbwrap_tool', 'celtenc051', 'gneqn', 'enscript', 'POST', 'ngettext', 'kreadconfig', 'igawk', 'mysqladmin', 'xml-resolver', 'qdbus-qt5', 'svnrdump', 'pango-view', 'gupnp-dlna-info-2.0', 'autoheader', 'fc-cache-64', 'flatpak', 'getopts', 'mget_temp_ext', 'hmac256', 'selfsign-getcert', 'over', 'remote-viewer', 'psed', 'lz', 'rcs', 'bluedevil-monolithic', 'intltool-merge', 'ppdmerge', 'nail', 'calibrate_ppa', 'grub2-script-check', 'vimdiff', 'play', 'blktrace', 'lastb', 'mysql_plugin', 'db47_checkpoint', 'h52gif', 'ldns-chaos', 'oparchive', 'kglobalaccel', 'pasuspender', 'rarian-sk-migrate', 'ogdi_import', 'keyrand', 'imsettings-info', 'loadunimap', 'akonadictl', 'mysqltest', 'ktelnetservice', 'verifytree', 'rpmbuild', 'padsp-32', 'osinfo-query', 'xzfgrep', 'addr2line', 'ps2pdf14', 'analysis.py', 'cd', 'ps2pdfwr', 'aconnect', 'mousetweaks', 'gnome-thumbnail-font', 'systemd-path', 'sha512sum', 'mstop', 'ib_read_lat', 'qemu-io', 'tmon', 'ksysguard', 'h2xs', 'lupdate-qt5', 'mlxfwmanager', 'sleep', 'mdig', 'rstream', 'mysqlcheck', 'ntpstat', 'crywrap', 'gedit', 'p11-kit', 'gdb-add-index', 'tclsh8.5', 'unix-lpr.sh', 'prove', 'cgexec', 'colrm', 'cs2cs', 'blkiomon', 'kcmshell4', 'htdigest', 'ping6', 'podselect', 'bzmore', 'ldns-compare-zones', 'totem-video-thumbnailer', 'pkcon', 'targetctl', 'akonadi_nepomuk_feeder', 'mobj_dump', 'kdepasswd', 'grepdiff', 'h5redeploy', 'dtestcm', 'grub2-mkimage', 'test_version', 'khotnewstuff-upload', 'ul', 'h5unjam', 'scsi_temperature', 'applydeltarpm', 'xprop', 'chcon', 'invproj', 'libinput-list-devices', 'stedump', 'padsp', 'pmgenmap', 'secret-tool', 'lsipc', 'truncate', 'db47_stat', 'perldoc', 'geoipupdate', 'nm-online', 'tracepath6', 'tcatest', 'iptables-xml', 'akonadi_nntp_resource', 'showkey', 'mlxmcg', 'gdbus-codegen', 'nsupdate', 'flex', 'seahorse', 'numastat', 'satyr', 'grub2-mkfont', 'mandb', 'kmenuedit', 'bc', 'klist', 'free', 'isdv4-serial-inputattach', 'iodbctestw', 'slabinfo', 'spice-vdagent', 'kget', 'shell-quote', 'gsl-histogram', 'empathy-accounts', 'ssh-agent', 'pgawk', 'ed', 'gcalccmd', 'sdp_long_message', 'lpq', 'kruler', 'ibdiagm.sh', 'crash', 'appstream-util', 'logfactor5', 'enchant-lsmod', 'cd-iccdump', 'svnsync', 'echo', 'geqn', 'update-ca-trust', 'vmware-toolbox-cmd', 'ssltap', 'zvbi-chains', 'mokutil', 'false', 'sg_readcap', 'syslinux', 'keyutil', 'urlgrabber', 'sg_read_long', 'msgen', 'gnome-system-monitor', 'lppasswd', 'abrt-action-trim-files', 'quotasync', 'knotify4', 'link', 'deallocvt', 'eu-size', 'gcc-nm', 'systemd-nspawn', 'cover', 'fgconsole', 'ctags', 'system-config-abrt', 'gvfs-set-attribute', 'systemd-escape', 'redhat_lsb_init', 'pmlogmv', 'kjscmd', 'l2ping', 'HEAD', 'dvd+rw-format', 'certmaster-getcert', 'uxterm', 'mysql_setpermission', 'rx', 'machinectl', 'sotruss', 'btrecord', 'gupnp-dlna-ls-profiles-2.0', 'nearblack', 'mbadblocks', 'sg_rtpg', 'rpm', 'locate', 'xml_spellcheck', 'update-mime-database', 'traceroute', 'ldns-keygen', 'db47_archive', 'btmon', 'gethostip', 'makedb', 'fc', 'rediff', 'db47_hotbackup', 'rsvg-convert', 'gpgsplit', 'gio-querymodules-64', 'du', 'mlxfwstress_ext', 'grub2-glue-efi', 'gtk-query-immodules-3.0-64', 'systemsettings', 'sgmlnorm', 'brltty-ctb', 'kdeinit4_shutdown', 'pdftohtml', 'rarian-sk-get-scripts', 'getkeycodes', 'ssh', 'gmt_shell_functions.sh', 'traceroute6', 'nad2bin', 'ab', 'systemd-loginctl', 'grub2-fstest', 'ndptool', 'sg_get_lba_status', 'cg_annotate', 'ppdhtml', 'seq', 'detect_ppa', 'msgmerge', 'gettext.sh', 'vdoreadonly', 'dmesg', 'solid-action-desktop-gen', 'osx', 'scrollkeeper-get-cl', 'ldns-dpa', 'yumdownloader', 'dgawk', 'gwenview_importer', 'targetcli', 'pflags', 'eu-stack', 'ms_print', 'fc-cat', 'sound_dump', 'scrollkeeper-preinstall', 'run-parts', 'ospcat', 'mlxreg_ext', 'qhelpconverter-qt5', 'xzdec', 'ypdomainname', 'kbuildsycoca4', 'gsl-config', 'systemd-detect-virt', 'sprof', 'ldns-key2ds', 'compress', 'xdg-screensaver', 'fc-conflist', 'mrd', 'brasero', 'testlibraw', 'gpg', 'tpmtool', 'ogrinfo', 'qmlmin-qt5', 'msginit', 'mtype', 'glib-genmarshal', 'sg_map', 'kbd_mode', 'mlxi2c', 'run_perftest_loopback', 'sha224sum', 'scrollkeeper-get-toc-from-docpath', 'hwloc-assembler-remote', 'vim', 'filterdiff', 'mlx_fpga_ext', 'perlcritic', 'pmloglabel', 'iodbctest', 'plasma-netbook', 'ekiga-helper', 'gcc-ar', 'plasma-remote-helper', 'akonadi_rds', 'listgeo', 'pango-querymodules-64', 'nss-policy-check', 'hwloc-diff', 'numactl', 'namei', 'myisamchk', 'pdfunite', 'gobject-query', 'aulastlog', 'mysqld_multi', 'hostnamectl', 'pdftocairo', 'abrt-action-notify', 'pactl', 's57dump', 'kjotsmigrator', 'gst-launch-1.0', 'smbcquotas', 'scrollkeeper-config', 'ac', 'pod2man', 'last', 'xml-xread', 'whatis', 'valgrind', 'nl-route-get', 'mpartition', 'gltpd', 'vmware-vgauth-cmd', 'cpansign', 'zmore', 'kdeinit4', 'newgidmap', 'qdbuscpp2xml-qt5', 'mpi-selector-menu', 'xlsfonts', 'pmlogcheck', 'theora_encode', 'hivexregedit', 'prlimit', 'ktimer', 'qmlmin', 'readelf', 'smbtar', 'gnatls', 'xvattr', 'msgcomm', 'akonadi_pop3_resource', 'bwResultAnalyzer.py', 'ptx', 'mstmcra', 'pwd', 'ffplay', 'lslogins', 'mysqlaccess', 'ksplashx', 'ffprobe', 'linux32', 'scrollkeeper-extract', 'logname', 'fwupdmgr', 'index_dump', 'ptargrep', 'fsview', 'isodump', 'fprintd-verify', 'eqn', 'desktop-file-edit', 'oddjob_request', 'pg_config', 'metacity', 'celtdec051', 'evince', 'unix2dos', 'abrt-action-analyze-core', 'pango-list', 'dd', 'opgprof', 'tcutest', 'sg_requests', 'abrt-action-analyze-xorg', 'build-classpath', 'sg_sync', 'pdftoppm', 'gcore', 'riostream', 'bluemoon', 'objcopy', 'nl-link-stats', 'dtestsrq', 'mget_temp', 'numad', 'sadf', 'db_dump185', 'event_rpcgen.py', 'lprm', 'unix2mac', 'gnome-screenshot', 'nf-exp-add', 'peekfd', 'sg_persist', 'db47_upgrade', 'aseqnet', 'ls', 'festival_server_control', 'mysqlslap', 'yacc', 'lsmcli', 'lsinitrd', 'reporter-mailx', 'innochecksum', 'intltool-update', 'tapestat', 'dbiproxy', 'kleopatra', 'tar', 'opreport', 'purple-client-example', 'splain', 'nl-cls-list', 'gkbd-keyboard-display', 'nmtui-hostname', 'ldns-testns', 'stapsh', 'my_print_defaults', 'nl-addr-delete', 'nettle-hash', 'lancelot', 'maketorrent-console', 'kunittestmodrunner', 'ldns-revoke', 'signver', 'hostname', 'nl-class-list', 'colcrt', 'servertool', 'scrollkeeper-get-index-from-docpath', 'gtf', 'konsole', 'gpg-agent', 'chcat', 'assistant-qt5', 'opjitconv', 'yum-debug-dump', 'rping', 'ps2ps2', 'spd-say', 'akonadi_icaldir_resource', 'mremote', 'checksctp', 'vdoforcerebuild', 'gnatname', 'time', 'kwrapper4', 'desktop-file-install', 'nspluginviewer', 'xmodmap', 'cmsutil', 'h5dump', 'gtk-query-immodules-2.0-64', 'gjs-console', 'df', 'mmove', 'unxz', 'sg_rbuf', 'virt-pki-validate', 'espdiff', 'dtestx', 'lzop', 'ksystraycmd', 'recountdiff', 'mysqldump', 'pdftops', 'grub2-editenv', 'systemconfigurator', 'factor', 'mtoolstest', 'curl', 'smbcacls', 'mstvpd', 'pg_controldata', 'kwalletmanager', 'io_demo', 'diff3', 'w', 'rpmdumpheader', 'liveinst', 'cut', 'systemd-sysv-convert', 'sg_referrals', '8211createfromxml', 'readom', 'ibsim-run', 'mclasserase', 'grub2-mkpasswd-pbkdf2', 'ib_read_bw', 'kabc2mutt', 'gvfs-rename', 'as', 'rarian-sk-get-extended-content-list', 'khelpcenter', 'mstfwreset', 'gpg-connect-agent', 'kuiserver', 'gslj', 'krandom.kss', 'iso-info', 'repomanage', 'hwloc-compress-dir', 'zipgrep', 'ld.bfd', 'onsgmls', 'read', 'zfgrep', 'nano', 'mcomp', 'rm', 'cifsiostat', 'rarian-sk-preinstall', 'turbostat', 'awk', 'ekiga-config-tool', 'ksplashx_scale', 'ib_atomic_bw', 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'reindexdb', 'pmval', 'tcbtest', 'readlink', 'strace-log-merge', 'sg_rmsn', 'nettle-lfib-stream', 'nl-list-sockets', 'dirname', 'tload', 'nl-cls-add', 'tcamttest', 'db47_verify', 'isosize', 'sg_map26', 'gdal_contour', 'gslp', 'easy_install', 'sweeper', 'ppdc', 'h5diff', 'orbd', 'btattach', 'setarch', 'plasmapkg', 'rpmkeys', 'mmount', 'sh', 'mixartloader', 'osgmlnorm', 'latrace-ctl', 'yes', 'podlint', 'gmake', 'grub2-mkstandalone', 'grub2-syslinux2cfg', 'gnome-keyring-daemon', 'vorbiscomment', 'nautilus-desktop', 'eu-strings', 'hpijs', 'mmcli', 'servicemenudeinstallation', 'brltty-install', 'nl-qdisc-add', 'drill', 'mc-tool', 'kstartupconfig4', 'lstopo-no-graphics', 'flint', 'systemd-stdio-bridge', 'gprof', 'mcheck', 'ipmi_ui', 'sg_vpd', 'nl-class-add', 'eps2eps', 'umap', 'gnome-disk-image-mounter', '[', 'udpong', 'ldns-walk', 'ical2vcal', 'virt-manager', 'paperconf', 'nf-monitor', 'vcut', 'join', 'kinfocenter', 'systemd-analyze', 'make', 'automake', 'xdg-open', 'loginctl', 'gnome-dictionary', 'vncpasswd', 'watch', 'mysql', 'virt-viewer', 'metacity-message', 'gtk-update-icon-cache', 'rvim', 'kmixctrl', 'chmem', 'newaliases.postfix', 'kaddressbookmigrator', 'qmleasing', 'cgget', 'psfaddtable', 'mshowfat', 'itrace', 'gnome-character-map', 'cmp', 'chardetect', 'ncurses5-config', 'unlz4', 'hciconfig', 'gst-launch-0.10', 'od', 'xorg-x11-fonts-update-dirs', 'gnatfind', 'intltoolize', 'nl-neigh-list', 'cscope-indexer', 'nroff', 'sar', 'glxinfo', 'attr', 'WebKitWebDriver', 'nl', 'secon', 'libnetcfg', 'sctp_status', 'editdiff', 'alt-java', 'ibus', 'openipmi_eventd', 'ib_write_lat', 'odbcinst', 'opimport', 'kaddressbook', 'libbluray_test', 'xzegrep', 'soelim', 'setterm', 'dropdb', 'pmdumplog', 'findrule', 'rebuild-jar-repository', 'nisdomainname', 'tchmgr', 'ldns-version', 'lsscsi', 'logview', 'gpk-log', 'ibdiagpath', 'pulseaudio', 'paps', 'libgcrypt-config', 'raw_ethernet_fs_rate', 'ophelp', 'neqn', 'tsort', 'cdrecord', 'systemd-firstboot', 'gconftool-2', 'qcatool2', 'dbus-send', 'nl-link-set', 'xsetmode', 'abrt-merge-pstoreoops', 'simc_lsmplugin', 'bzdiff', 'cairo-sphinx', 'virt-host-validate', 'ptar', 'kcheckrunning', 'tclsh', 'cpanm', 'report-cli', 'oLschema2ldif', 'strip', 'kpasswd', 'nl-addr-add', 'ldns-keyfetcher', 'cd-paranoia', 'pidstat', 'keytool', 'gtbl', 'rmiregistry', 'abs2rel', 'torrentinfo-console', 'dnsdomainname', 'teamnl', 'rsvg-view-3', 'totem', 'cpio', 'ptaskset', 'uptime', 'qt-faststart', 'a2p', 'fc-pattern', 'fold', 'text2wave', 'rpmsign', 'kfmclient', 'systemd-tty-ask-password-agent', 'db_printlog', 'amidi', 'sim_lsmplugin', 'tabs', 'gst-xmlinspect', 'dos2unix', 'rmid', 'openal-info', 'thor', 'ldns-test-edns', 'gst-feedback-0.10', 'ogg123', 'libpng-config', 'qemu-img', 'pacmd', 'alsaucm', 'java', 'mount', 'kdesu', 'pyinotify', 'bluedevil-sendfile', 'httxt2dbm', 'mdel', 'sg_senddiag', 'lsb_release', 'mdevices_info', 'gnome-software', 'maketorrent', 'rarian-sk-get-content-list', 'mysqlhotcopy', 'systemd-cgtop', 'vinagre', 'sg_read', 'xdpyinfo', 'raw_ethernet_lat', 'loadkeys', 'akonadi2xml', 'login', 'postmaster', 'gnat', 'krfb', 'zgrep', 'nepomukserver', 'myisamlog', 'xzcat', 'gstack', 'python2', 'pdfdetach', 'nepomukbackup', 'rhythmbox-client', 'si_clusterconfig', 'kfilemetadatareader', 'reposync', 'kdostartupconfig4', 'db_load', 'perlver', 'qmlimportscanner', 'install', 'ofed_rpm_info', 'pod2html', 'vncconfig', 'amixer', 'ci', 'systemctl', 'kmail-migrator', 'ipa-getcert', 'chown', 'xkbcomp', 'ibv_devices', 'libpng15-config', 'pinentry-curses', 'mkisofs', 'kapplymousetheme', 'pkttyagent', 'mlxdump', 'lz4c', 'consolehelper', 'cal', 'sg_sanitize', 'oxygen-demo', 'ogdi_info', 'osinfo-db-path', 'ldnsd', 'nfs4_setfacl', 'mysql_tzinfo_to_sql', 'policyeditor', 'empathy-debugger', 'lastcomm', 'ldns-rrsig', 'timedatectl', 'sexp-conv', 'op-check-perfevents', 'nl-link-list', 'gtar', 'install-printerdriver', 'xstdcmap', 'gdmflexiserver', 'tgz', 'ipcmk', 'rvi', 'kgpg', 'sg_opcodes', 'pdf2dsc', 'mlxcables_ext', 'podchecker', 'virt-top', 'gnatkr', 'resize', 'perlivp', 'clear', 'renice', 'kbdinfo', 'kde-open', 'msgconv', 'qmltestrunner', 'nsenter', 'toc2cue', 'sg_sat_phy_event', 'ksplashqml', 'dwz', 'akonadi_microblog_resource', 'chattr', 'kshell4', 'gnome-abrt', 'db47_codegen', 'showconsolefont', 'pcre-config', 'opcontrol', 'scrollkeeper-update', 'kcolorchooser', 'ffserver', 'akonadiserver', 'rpm2cpio', 'gdalenhance', 'rpmspec', 'qml', 'hcidump', 'ibnlparse', 'scl_source', 'cgsnapshot', 'lwp-dump', 'lrelease-qt5', 'perl5.16.3', 'utmpdump', 'sgp_dd', 'vgdb', 'x86_energy_perf_policy', 'tctmttest', 'gem', 'msghack', 'paste', 'ogginfo', 'vmware-user', 'gcm-picker', 'sudo', 'ccache-swig', 'gnome-session-quit', 'sg_write_same', 'ibdump', 'grl-launch-0.3', 'lssubsys', 'mkrfc2734', 'pamon', 'gst-xmlinspect-0.10', 'kdebugdialog', 'fc-scan', 'msgcmp', 'kde-cp', 'sdp_run_test', 'firewall-cmd', 'rsync', 'yum', 'wc', 'c2ph', 'seapplet', 'gettextize', 'openipmish', 'cmtime', 'pphs', 'gzip', 'alsa-delay', 'nl-monitor', 'gnutls-cli', 'cpupower', 'update-gtk-immodules', 'libtool', 'karm', 'localectl', 'logger', 'lprm.cups', 'eu-findtextrel', 'gvfs-save', 'mesg', 'myisampack', 'pk12util', 'teamd', 'plasma-windowed', 'mzip', 'ldns-notify', 'pwscore', 'psfstriptable', 'cups-calibrate', 'invgeod', 'nohup', 'sg_unmap', 'maketext', 'mknod', 'linux-boot-prober', 'kres-migrator', 'oldfind', 'fixqt4headers.pl', 'qmlscene', 'wvdial', 'gvfs-mount', 'bdftruncate', 'mlxcables', 'rhythmbox', 'hwloc-assembler', 'droplang', 'host', 'basename', 'osinfo-db-validate', 'amuFormat.sh', 'implantisomd5', 'abrt-action-analyze-vmcore', 'createuser', 'vdoprepareupgrade', 'test', 'gpgparsemail', 'pchrt', 'gpgv2', 'verify_blkparse', 'akonaditray', 'write', 'lsmem', 'bzip2recover', 'pmstore', 'kbdrate', 'bashbug', 'cdda2wav', 'tty', 'batch', 'systemd-tmpfiles', 'meinproc4', 'gnome-calculator', 'regdiff', 'akonadi_mixedmaildir_resource', 'mlxuptime', 'rview', 'setmetamode', 'f95', 'gpk-prefs', 'itweb-settings.itweb', 'aria_dump_log', 'clean-binary-files', 'setleds', 'scsi_start', 'gnome-session', 'sctp_test', 'bno_plot.py', 'gnutls-serv', 'xml2-config', 'reporter-upload', 'fprintd-list', 'sg_copy_results', 'ppdpo', 'glib-mkenums', 'pinentry-qt', 'xmlpretty', 'eu-addr2line', 'hex2hcd', 'uncompress', 'at', 'qmi-network', 'pmdiff', 'strings', 'bzcat', 'csslint-0.6', 'pathchk', 'scsi_satl', 'python2.7', 'alsaunmute', 'ldns-nsec3-hash', 'raw_ethernet_bw', 'gdalmanage', 'gdk-pixbuf-thumbnailer', 'h5fc-64', 'gvfs-ls', 'h5c++', 'flite_time', 'ogrlineref', 'migspeed', 'script', 'ksnapshot', 'pdfimages', 'certtool', 'dracut', 'wish8.5', 'wvdialconf', 'kuser', 'grub2-mklayout', 'aria_ftdump', 'arecordmidi', 'imsettings-reload', 'akonadi_openxchange_resource', 'ssh-add', 'pl2pm', 'python2-config', 'toe', 'xev', 'kmix', 'pre-grohtml', 'taskset', 'patch', 'ipa', 'pmsocks', 'zless', 'lscgroup', 'synclient', 'odbc_config', 'cd-it8', 'gendiff', 'scrollkeeper-gen-seriesid', 'objdump', 'uniq', 'mysqld_safe_helper', 'zsh', 'gtroff', 'gnome-contacts', 'geoiplookup', 'sdrcomp', 'killall', 'scl', 'aplay', 'infocmp', 'sudoedit', 'xsltproc', 'svnlook', 'ncgen', 'GET', 'nl-tctree-list', 'gst-inspect', 'akonadi_localbookmarks_resource', 'lpstat', 'pminfo', 'mcra', 'flite', 'proj', 'gio', 'pmstat', 'sg_compare_and_write', 'ksystemlog', 'qml-qt5', 'krunner', 'strace', 'nice', 'memhog', 'pdffonts', 'sg_xcopy', 'setup-nsssysinit', 'enchant', 'sndfile-resample', 'akonadi_invitations_agent', 'm4', 'perror', 'dstat', 'gunzip', 'combinedeltarpm', 'grep', 'gnome-keyring', 'kdf', 'scriptreplay', 'konsoleprofile', 'testgdbm', 'gnome-shell-extension-prefs', 'ldns-zcat', 'qmicli', 'scp', 'newuidmap', 'notify-send', 'kdestroy', 'dconf', 'sg_start', 'lchfn', 'ps2ascii', 'gdm-screenshot', 'db47_recover', 'akonadi_mailtransport_dummy_resource', 'ifnames', 'chacl', 'ark', 'gdaldem', 'setfont', 'msgfmt', 'escputil', 'lsns', 'modutil', 'solterm', 'realpath', 'itweb-settings', 'xdg-desktop-menu', 'virt-install', 'pg_restore', 'checkpolicy', 'diffpp', 'pod2usage', 'gatttool', 'extresso', 'findmnt', 'pssh-askpass', 'vncserver_wrapper', 'spice-streaming-agent', 'vdo-by-dev', 'sdiff', 'testepsg', 'kwalletd', 'gdalwarp', 'bdsplice', 'latrace', 'kwrite', 'mkafmmap', 'kabcclient', 'abrt-action-generate-backtrace', 'rarian-sk-update', 'sha1sum', 'postgresql-check-db-dir', 'ogrtindex', 'plistutil', 'yapp', 'fmt', 'xdg-icon-resource', 'certutil', 'solid-hardware', 'memdiskfind', 'gsnd', 'mmd', 'mysqld_safe', 'regtree', 'mckey', 'sctp_darn', 'lsdiff', 'luac', 'rename', 'dbus-launch', 'gst-xmllaunch-0.10', 'ptksh', 'ca-legacy', 'gnatchop', 'pg_ctl', 'nf-ct-add', 'pckt_drop', 'sginfo', 'startx', 'saytime', 'pbmtpg', 'pod2latex', 'mstmtserver', 'update-desktop-database', 'idn', 'libinput', 'mstregdump', 'lprsetup.sh', 'dbus-uuidgen', 'plasma-overlay', 'tracker', 'imsettings-list', 'stunbdc', 'ksshell', 'fc-validate', 'ksverdiff', 'unalias', 'uuidgen', 'ibdmchk', 'hcitool', 'policytool', 'gst-typefind', 'logresolve', 'zipnote', 'fprintd-delete', 'keditbookmarks', 'flint_ext', 'resolve_stack_dump', 'sg_modes', 'aec', 'influx_stress', 'vmtoolsd', 'file-roller', 'influx_tsm', 'reset', 'parec', 'si_pushoverrides', 'kcharselect', 'valgrind-listener', 'sync', 'cd-info', 'launchmany-console', 'gettext', 'mstprivhost', 'pod_cover', 'pnuke', 'gnome-boxes', 'sg_format', 'htmltree', 'rcsfreeze', 'autoreconf', 'shred', 'grub2-menulst2cfg', 'diffstat', 'isoinfo', 'si_pcp', 'bundle', 'ltrace', 'ibv_ud_pingpong', 'perl', 'db_deadlock', 'nc', 'htpasswd', 'pstruct', 'usbhid-dump', 'systemd-ask-password', 'pmevent', 'stapbpf', 'git', 'netaddr', 'influx_inspect', 'pwhich', 'cpan', 'kdeinit4_wrapper', 'atrm', 'xdg-settings', 'grub2-render-label', 'akonadi_maildispatcher_agent', 'tkjpeg', 'ldns-read-zone', 's2p', 'sdpscanner', 'gdal_rasterize', 'h5ls', 'ibv_srq_pingpong', 'oggenc', 'pmtrace', 'msgexec', 'x0vncserver', 'nl-route-list', 'test_ppa', 'ksvalidator', 'mergerepo', 'gnome-shell-extension-tool', 'lp.cups', 'sg_scan', 'eu-elfcmp', 'nf-exp-delete', 'gpic', 'mysql_fix_extensions', 'dtrace', 'scrollkeeper-get-content-list', 'wqdump', 'systemd-machine-id-setup', 'curl-config', 'pmie2col', 'gsl-randist', 'diff', 'uuclient', 'setfattr', 'ibnetsplit', 'erb', 'python-config', 'psql', 'Xvnc', 'espeak', 'qtdiag', 'smbprint', 'col', 'coredumpctl', 'dehtmldiff', 'xinput', 'rarian-sk-gen-uuid', 'paplay', 'xdg-user-dir', 'sedismod', 'smbclient', 'samba-regedit', 'preparetips', 'sg', 'pinentry-gtk', 'hwloc-info', 'rpcclient', 'kioclient', 'qemu-nbd', 'gst-launch', 'flock', 'gtk-launch', 'foomatic-rip', 'pgrep', 'core_to_hca_dgx.sh', 'kfontinst', 'hwloc-calc', 'unicode_stop', 'pitchplay', 'ksflatten', 'smbtree', 'sbcinfo', 'dimax_init', 'gnome-session-selector', 'pkla-admin-identities', 'pmafm', 'si_psh', 'gnome-session-inhibit', 'xmvn-builddep', 'khotnewstuff4', 'shasum', 'spam', 'x86_64-redhat-linux-gcc', 'dir', 'cp', 'hunspell', 'nautilus', 'ipmish', 'nl-qdisc-list', 'mailq', 'ib_write_bw', 'msgunfmt'] [] ['ipmidetectd', 'lsof', 'lvscan', 'lgroupadd', 'mount.nfs4', 'grub2-install', 'ibhosts', 'sosreport', 'xfs_copy', 'rpc.statd', 'atrun', 'setup_mr_cache.sh', 'automount', 'cupsfilter', 'mkfs.minix', 'xfs_mkfile', 'vgcreate', 'saned', 'grub2-ofpathname', 'mtr', 'si_installbtimage', 'tcpslice', 'cracklib-format', 'biosdevname', 'era_check', 'swaplabel', 'poweroff', 'pvck', 'rtcwake', 'sldd.sh', 'glusterfs', 'augenrules', 'lvdisplay', 'saslauthd', 'libvirtd', 'pwck', 'NetworkManager', 'chgpasswd', 'si_cpimage', 'postlog', 'set_irq_affinity_bynode.sh', 'cfdisk', 'useradd', 'nameif', 'sysctl', 'genl', 'grub2-reboot', 'update-smart-drivedb', 'sendmail.postfix', 'htcacheclean', 'usernetctl', 'virt-what', 'cache_restore', 'rpc.nfsd', 'smartd', 'thin_trim', 'delpart', 'rdma-ndd', 'ntpd', 'mkfs.vfat', 'lvmsadc', 'ib2ib_setup', 'lockdev', 'ypserv', 'xfs_rtcp', 'userhelper', 'dmstats', 'mount.nfs', 'fcoemon', 'lnewusers', 'iscsiadm', 'semodule', 'sasldblistusers2', 'lgroupmod', 'xfs_metadump', 'reboot', 'dhclient-script', 'lvextend', 'in.tftpd', 'postalias', 'dosfslabel', 'ntsysv', 'adcli', 'grub2-macbless', 'nfsdcltrack', 'ModemManager', 'chkconfig', 'iscsi-iname', 'ibacm', 'mountstats', 'pwhistory_helper', 'ipa-client-install', 'iptables-restore', 'xfsinvutil', 'selinuxconlist', 'setsebool', 'ping6', 'ethtool', 'yppoll', 'blkmapd', 'ip6tables-restore', 'mlnx_bf_configure_ct', 'unix_update', 'lldptool', 'sfdisk', 'sedispatch', 'agetty', 'cma_roce_mode', 'tracepath6', 'newusers', 'lvrename', 'rtkitctl', 'pluginviewer', 'xfs_logprint', 'unsquashfs', 'fcrls', 'si_mvimage', 'resizepart', 'nologin', 'chroot', 'ibsysstat', 'dump-utmp', 'plymouth-set-default-theme', 'rmmod', 'sysctl_perf_tuning', 'e2image', 'sushell', 'xfs_quota', 'zvbid', 'consoletype', 'lsmod', 'setcap', 'cupsaccept', 'iscsiuio', 'dump_fts', 'vgimport', 'rpc.gssd', 'pm-suspend-hybrid', 'dm_dso_reg_tool', 'new-kernel-pkg', 'iconvconfig', 'ntpdate', 'selabel_partial_match', 'common_irq_affinity.sh', 'si_rmimage', 'luseradd', 'ip', 'matchpathcon', 'show_gids', 'mount.fuse', 'netreport', 'umount.udisks2', 'ibswitches', 'grub2-bios-setup', 'rdisc', 'usb_modeswitch', 'badblocks', 'dhcrelay', 'smtp-source', 'si_pushupdate', 'abrt-install-ccpp-hook', 'ipa-rmkeytab', 'abrt-harvest-vmcore', 'bpftool', 'ibroute', 'fcgistarter', 'key.dns_resolver', 'clockdiff', 'hwclock', 'gss-server', 'pvremove', 'vendor_post_uninstall.sh', 'route', 'hypervfcopyd', 'si_monitor_before', 'vgmknodes', 'brctl', 'sminfo', 'postlock', 'xfs_io', 'swapoff', 'nl-cls-list', 'zramctl', 'quot', 'pam_console_apply', 'dump_mfts.sh', 'nl-class-list', 'rpc.ypxfrd', 'pam_timestamp_check', 'pivot_root', 'ypset', 'dcbtool', 'check_lft_balance.pl', 'pppoe-discovery', 'lvmpolld', 'ntptime', 'tickadj', 'pvmove', 'ledctl', 'fsfreeze', 'firstboot', 'cache_writeback', 'cgclear', 'umount.nfs', 'genhostid', 'cache_check', 'ifcfg', 'liveinst', 'btrfs-map-logical', 'rtstat', 'rpcinfo', 'btrfs-find-root', 'vgrename', 'ipa-getkeytab', 'mdadm', 'selinuxdefcon', 'ifstat', 'set_irq_affinity_cpulist.sh', 'setroubleshootd', 'reject', 'cryptsetup', 'latencytop-tui', 'ledmon', 'pwunconv', 'ebtables', 'btrfstune', 'powertop', 'dhcpd', 'visudo', 'postconf', 'perfquery', 'ebtables-save', 'tc', 'lvmconfig', 'cups-browsed', 'alternatives', 'pvscan', 'thin_check', 'partprobe', 'si_mkdhcpserver', 'firewalld', 'request-key', 'ntpq', 'iprconfig', 'vmcore-dmesg', 'cache_dump', 'cbq', 'e2freefrag', 'ipsec', 'yumdb', 'usbmuxd', 'setregdomain', 'rtacct', 'plipconfig', 'accton', 'regdbdump', 'btrfs-debug-tree', 'modprobe', 'iptables-save', 'fstrim', 'abrt-auto-reporting', 'setpci', 'mlnx-sf', 'fsck.cramfs', 'dmeventd', 'ibfindnodesusing.pl', 'btrfs', 'si_mkclientnetboot', 'pm-hibernate', 'selabel_digest', 'ldattach', 'iw', 'fcnsq', 'build-locale-archive', 'findfs', 'partx', 'btrfs-image', 'ebtables-restore', 'lgroupdel', 'luserdel', 'semanage', 'wpa_supplicant', 'abrt-harvest-pstoreoops', 'thin_repair', 'latencytop', 'fdformat', 'cache_repair', 'cifs.upcall', 'tuned', 'blkdiscard', 'exportfs', 'wipefs', 'grub2-setpassword', 'capsh', 'raid-check', 'suexec', 'restorecon', 'nl-cls-delete', 'xfs_repair', 'postqueue', 'si_getimage_before', 'tracepath', 'postcat', 'cracklib-unpacker', 'postfix', 'pvresize', 'sss_cache', 'fxload', 'arpd', 'fsck.fat', 'atd', 'fdisk', 'glibc_post_upgrade.x86_64', 'vdptool', 'setup', 'fcoeadm', 'mkfs.ext3', 'cacertdir_rehash', 'vgscan', 'tcpdmatch', 'mlnx_tune', 'ifenslave', 'si_netbootmond', 'vpddecode', 'chpasswd', 'ip6tables-save', 'ipa-client-automount', 'e4defrag', 'avcstat', 'cifs.idmap', 'slattach', 'authconfig-tui', 'show_irq_affinity.sh', 'crda', 'ibccquery', 'ipmaddr', 'yptest', 'gdm', 'mkdict', 'cupsd', 'mkfs.fat', 'sendmail', 'cupsenable', 'saquery', 'ldconfig', 'losetup', 'routef', 'getpcaps', 'virtlogd', 'thin_metadata_size', 'vgcfgrestore', 'fixparts', 'radvd', 'pdata_tools', 'ibccconfig', 'lid', 'mpathpersist', 'ibdev2netdev', 'setenforce', 'quotaon', 'sgdisk', 'sktest', 'vgck', 'selinuxenabled', 'yum-complete-transaction', 'try-from', 'xfs_growfs', 'fuser', 'e2undo', 'si_pushinstall', 'rtpr', 'rotatelogs', 'grpconv', 'si_mkbootserver', 'nl-qdisc-delete', 'fatlabel', 'odp_stat.sh', 'ifup', 'install-info', 'iprinit', 'alsactl', 'selabel_lookup_best_match', 'tcpdump', 'si_mkautoinstallscript', 'lvconvert', 'lnstat', 'pam_tally2', 'oddjobd', 'mkfs.btrfs', 'si_monitortk', 'rpc.rquotad', 'dosfsck', 'dtorrent', 'clock', 'lvreduce', 'udevadm', 'xfsdump', 'efibootmgr', 'lvcreate', 'ifdown', 'iconvconfig.x86_64', 'vgsplit', 'ipmievd', 'rpcbind', 'testsaslauthd', 'setquota', 'insmod', 'modinfo', 'mke2fs', 'abrt-dbus', 'nl-classid-lookup', 'rpcdebug', 'pppstats', 'plymouthd', 'gssproxy', 'osd_login', 'bfb-install', 'selinuxexeccon', 'cupsaddsmb', 'mksquashfs', 'quotaoff', 'ibportstate', 'glusterfsd', 'btrfsck', 'si_addclients', 'chat', 'grub2-rpm-sort', 'sys-unconfig', 'zic', 'setfiles', 'lpinfo', 'iprupdate', 'nfsiostat', 'xtables-multi', 'logsave', 'hardlink', 'vgmerge', 'mlnx_affinity', 'nl-pktloc-lookup', 'pppd', 'ip6tables', 'pwconv', 'set_irq_affinity.sh', 'anaconda', 'unix_chkpwd', 'ss', 'ausearch', 'lchage', 'xfs_fsr', 'switch_root', 'smartctl', 'ibnetdiscover', 'postmulti', 'ibtracert', 'smparquery', 'mkhomedir_helper', 'ctstat', 'mkfs.ext4', 'ibsrpdm', 'sshd-keygen', 'update-alternatives', 'hwloc-dump-hwdata', 'xfs_freeze', 'pvs', 'vgs', 'bridge', 'si_mkdhcpstatic', 'thin_ls', 'si_getimage', 'weak-modules', 'ibclearcounters', 'cma_roce_tos', 'adduser', 'si_installbtimage_before', 'crond', 'xfs_admin', 'eapol_test', 'gluster', 'skdump', 'selinux_restorecon', 'init', 'era_dump', 'xfs_db', 'rpc.mountd', 'nfsstat', 'grub2-set-default', 'mkfs.xfs', 'runlevel', 'abrt-configuration', 'service', 'makedumpfile', 'rsyslogd', 'iprdbg', 'mkdosfs', 'getsebool', 'certmonger', 'chcpu', 'arp', 'usb_modeswitch_dispatcher', 'dmsetup', 'ibqueryerrors', 'lpadmin', 'show_counters', 'start-statd', 'iblinkinfo', 'grub2-probe', 'smtp-sink', 'rngd', 'kpatch', 'vendstat', 'accept', 'btrfs-zero-log', 'groupmems', 'umount.nfs4', 'logrotate', 'showmount', 'create-cracklib-dict', 'pm-utils-bugreport-info.sh', 'mkdumprd', 'hypervvssd', 'vgchange', 'iptables', 'fsck.minix', 'fsck.ext3', 'lpmove', 'sulogin', 'lshw', 'aureport', 'ibstatus', 'ifconfig', 'httpd', 'postmap', 'dhclient', 'vgcfgbackup', 'cgrulesengd', 'apachectl', 'sssd', 'shutdown', 'fsck.vfat', 'vgreduce', 'tuned-adm', 'ibstat', 'pvdisplay', 'resize2fs', 'genl-ctrl-list', 'grub2-mkconfig', 'thin_delta', 'cupsdisable', 'ypbind', 'packer', 'auditd', 'killall5', 'grpunconv', 'fixfiles', 'grubby', 'postkick', 'cups-genppd.5.2', 'devlink', 'fipvlan', 'lvchange', 'vgextend', 'lvresize', 'groupmod', 'pm-powersave', 'parted', 'lvmsar', 'debugfs', 'sestatus', 'installkernel', 'lpc.cups', 'btrfs-convert', 'nl-class-delete', 'hypervkvpd', 'safe_finger', 'dmfilemapd', 'alsabat-test.sh', 'redhat_lsb_trigger.x86_64', 'cgdcbxd', 'swapon', 'lpasswd', 'run_srp_daemon', 'update-pciids', 'si_mkbootpackage', 'nl-cls-add', 'ksmtuned', 'xfs_bmap', 'xfsrestore', 'tune2fs', 'iscsid', 'mii-diag', 'nl-qdisc-add', 'nl-class-add', 'edquota', 'depmod', 'vendor_pre_uninstall.sh', 'applygnupgdefaults', 'alsa-info', 'addpart', 'era_restore', 'ipset', 'smpdump', 'rdma', 'mkfs.msdos', 'e2fsck', 'pm-suspend', 'vgremove', 'tcsd', 'nstat', 'audispd', 'era_invalidate', 'filefrag', 'vgdisplay', 'vgconvert', 'mount.glusterfs', 'accessdb', 'groupadd', 'multipath', 'getcap', 'kexec', 'mount.cifs', 'iptunnel', 'quotacheck', 'netscsid', 'zdump', 'mkfs.cramfs', 'iotop', 'mlnx_bf_configure', 'xfs_mdrestore', 'smpquery', 'fsck.ext4', 'mkfs.ext2', 'dmidecode', 'sefcontext_compile', 'gdisk', 'thin_dump', 'selabel_lookup', 'wpa_cli', 'sa', 'si_monitor', 'alsa-info.sh', 'dnsmasq', 'btrfs-select-super', 'genhomedircon', 'dump_lfts.sh', 'cgdisk', 'paperconfig', 'lvm', 'abrtd', 'routel', 'xfs_info', 'fsck.btrfs', 'pethtool', 'ownership', 'lvmdump', 'ppp-watch', 'biosdecode', 'lpc', 'grub2-get-kernel-settings', 'nl-link-list', 'ibclearerrors', 'pppdump', 'ofed_uninstall.sh', 'rpc.yppasswdd', 'unbound-anchor', 'pvchange', 'halt', 'si_mkrsyncd_conf', 'ibcacheedit', 'intel-microcode2ucode', 'sshd', 'grub2-sparc64-setup', 'mii-tool', 'rtmon', 'ibrouters', 'sysinfo-snapshot.py', 'cracklib-check', 'mpathconf', 'faillock', 'compat_gid_gen', 'sim_server', 'groupdel', 'telinit', 'mkfs', 'avahi-daemon', 'virtlockd', 'xfs_estimate', 'yppush', 'blkdeactivate', 'lvremove', 'iprsos', 'lldpad', 'ipa-certupdate', 'show_irq_affinity_hints.sh', 'tcpd', 'fsck.ext2', 'fsck', 'uuserver', 'multipathd', 'usermod', 'ibping', 'osmtest', 'iscsistart', 'pidof', 'addgnupghome', 'saslpasswd2', 'convertquota', 'sgpio', 'blkid', 'dmevent_tool', 'dracut', 'grpck', 'dumpe2fs', 'dmraid', 'lspci', 'xqmstats', 'rshim', 'mklost+found', 'ether-wake', 'lvmconf', 'sm-notify', 'spice-vdagentd', 'radvdump', 'kpartx', 'extlinux', 'cgconfigparser', 'e2label', 'vipw', 'postsuper', 'arping', 'ctrlaltdel', 'xfs_ncheck', 'pvcreate', 'handle-sshpw', 'sln', 'cupsreject', 'autrace', 'anacron', 'chronyd', 'authconfig', 'abrt-server', 'pifconfig', 'auditctl', 'vgimportclone', 'thin_restore', 'lvmetad', 'ibidsverify.pl', 'dmraid.static', 'opensm', 'iprdump', 'fsck.msdos', 'postdrop', 'cupsctl', 'cups-genppdupdate', 'fsadm', 'realm', 'mdmon', 'ntpdc', 'fcping', 'getenforce', 'readprofile', 'lvmdiskscan', 'userdel', 'vigr', 'rpc.idmapd', 'lusermod', 'thin_rmap', 'ibaddr', 'nfsidmap', 'quotastats', 'rfkill', 'cache_metadata_size', 'cracklib-packer', 'srp_daemon', 'lvs', 'repquota', 'irqbalance', 'blockdev', 'runuser', 'ibnodes', 'ipa-join', 'fsck.xfs', 'vgexport', 'ntp-keygen', 'nl-qdisc-list', 'mkswap', 'load_policy', 'dump-acct', 'wpa_passphrase'] Warning accessing /public/home/test123/.local/bin gives errors: [Errno 2] No such file or directory: '/public/home/test123/.local/bin' Warning accessing /public/home/test123/bin gives errors: [Errno 2] No such file or directory: '/public/home/test123/bin' Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] child config.sourceControl 0.028384 ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/public/home/test123/chenjh/software/petsc-3.14.6/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) This is a tarball installation child PETSc.options.petscclone 0.002258 ================================================================================ TEST setNativeArchitecture from PETSc.options.arch(/public/home/test123/chenjh/software/petsc-3.14.6/config/PETSc/options/arch.py:31) TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ================================================================================ TEST configureArchitecture from PETSc.options.arch(/public/home/test123/chenjh/software/petsc-3.14.6/config/PETSc/options/arch.py:43) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set No previous hashfile found Setting hashfile: intel_2020/lib/petsc/conf/configure-hash Deleting configure hash file: intel_2020/lib/petsc/conf/configure-hash Unable to delete configure hash file: intel_2020/lib/petsc/conf/configure-hash child PETSc.options.arch 0.136705 ================================================================================ TEST setInstallDir from PETSc.options.installDir(/public/home/test123/chenjh/software/petsc-3.14.6/config/PETSc/options/installDir.py:39) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:39) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/public/home/test123/chenjh/software/petsc" ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/public/home/test123/chenjh/software/petsc-3.14.6/config/PETSc/options/installDir.py:85) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:85) ================================================================================ TEST cleanConfDir from PETSc.options.installDir(/public/home/test123/chenjh/software/petsc-3.14.6/config/PETSc/options/installDir.py:78) TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:78) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/public/home/test123/chenjh/software/petsc-3.14.6/config/PETSc/options/installDir.py:62) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:62) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /public/home/test123/chenjh/software/petsc-3.14.6/intel_2020/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/public/home/test123/chenjh/software/petsc-3.14.6/config/PETSc/options/installDir.py:98) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:98) child PETSc.options.installDir 0.008350 ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/public/home/test123/chenjh/software/petsc-3.14.6/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/public/home/test123/chenjh/software/petsc-3.14.6/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000719 ================================================================================ TEST configureCLanguage from PETSc.options.languages(/public/home/test123/chenjh/software/petsc-3.14.6/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.001441 ================================================================================ TEST printEnvVariables from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:1908) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1908) **** printenv **** LOADEDMODULES=compiler/intel/2021.3.0:mpi/intelmpi/2021.3.0:compiler/gcc/7.3.1 PERL_MM_OPT=INSTALL_BASE=/public/home/test123/perl5 SLURM_PMIX_DIRECT_CONN_EARLY=false LESSOPEN=||/usr/bin/lesspipe.sh %s __MODULES_LMALTNAME=compiler/intel/2021.3.0&as|compiler/default&as|compiler/latest:mpi/intelmpi/2021.3.0&as|mpi/intelmpi/default&as|mpi/intelmpi/latest:compiler/gcc/7.3.1&as|compiler/gcc/default&as|compiler/gcc/latest PERL_LOCAL_LIB_ROOT=:/public/home/test123/perl5 CPLUS_INCLUDE_PATH=/public/software/compiler/gcc/7.3.1/include/c++/7:/public/software/compiler/gcc/7.3.1/include/c++/7/x86_64-pc-linux-gnu CPATH=/public/software/mpi/intelmpi/2021.3.0/include:/public/software/compiler/intel/2021.3.0/compiler/include:/public/software/compiler/intel/2021.3.0/mkl/include:/public/software/compiler/intel/2021.3.0/tbb/include SLURM_PMIX_TIMEOUT=3000 USER=test123 PATH=/public/software/compiler/gcc/7.3.1/bin:/public/software/mpi/intelmpi/2021.3.0/libfabric/bin:/public/software/mpi/intelmpi/2021.3.0/bin:/public/software/compiler/intel/2021.3.0/bin/intel64:/public/software/compiler/intel/2021.3.0/mkl/bin/intel64:/usr/lib64/qt-3.3/bin:/opt/gridview/pmix/bin:/opt/gridview/pmix/sbin:/public/home/test123/perl5/bin:/public/software/apps/module/bin:/opt/gridview/slurm/bin:/opt/gridview/slurm/sbin:/opt/gridview/munge/bin:/opt/gridview/munge/sbin:/opt/gridview/clusquota//bin:/opt/gridview/clusquota//sbin:/opt/gridview/clusconf/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/public/home/test123/.local/bin:/public/home/test123/bin QTDIR=/usr/lib64/qt-3.3 LD_LIBRARY_PATH=/public/software/compiler/gcc/7.3.1/lib64:/public/software/compiler/gcc/7.3.1/lib:/public/software/compiler/gcc/7.3.1/external_libs/lib:/public/software/mpi/intelmpi/2021.3.0/libfabric/lib:/public/software/mpi/intelmpi/2021.3.0/lib/release:/public/software/mpi/intelmpi/2021.3.0/lib:/public/software/compiler/intel/2021.3.0/compiler/lib/intel64_lin:/public/software/compiler/intel/2021.3.0/mkl/lib/intel64:/public/software/compiler/intel/2021.3.0/tbb/lib/intel64:/opt/gridview/pmix/lib:/opt/gridview/slurm/lib:/opt/gridview/slurm/lib64:/opt/gridview/munge/lib SSH_CONNECTION=172.17.75.128 3972 10.10.10.50 22 LANG=en_US.UTF-8 QTLIB=/usr/lib64/qt-3.3/lib __MODULES_LMPREREQ=mpi/intelmpi/2021.3.0&compiler/intel SHELL=/bin/bash QT_PLUGIN_PATH=/usr/lib64/kde4/plugins:/usr/lib/kde4/plugins LIBRARY_PATH=/public/software/compiler/gcc/7.3.1/lib64:/public/software/compiler/gcc/7.3.1/lib:/public/software/compiler/gcc/7.3.1/external_libs/lib:/public/software/mpi/intelmpi/2021.3.0/libfabric/lib:/public/software/mpi/intelmpi/2021.3.0/lib/release:/public/software/mpi/intelmpi/2021.3.0/lib:/public/software/compiler/intel/2021.3.0/compiler/lib/intel64_lin:/public/software/compiler/intel/2021.3.0/mkl/lib/intel64:/public/software/compiler/intel/2021.3.0/tbb/lib/intel64 INCLUDE=/public/software/mpi/intelmpi/2021.3.0/include:/public/software/compiler/intel/2021.3.0/compiler/include:/public/software/compiler/intel/2021.3.0/mkl/include:/public/software/compiler/intel/2021.3.0/tbb/include BASH_FUNC_module()=() { local _mlredir=1; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '0' ]; then _mlredir=0; else if [ "$MODULES_REDIRECT_OUTPUT" = '1' ]; then _mlredir=1; fi; fi; fi; case " $@ " in *' --no-redirect '*) _mlredir=0 ;; *' --redirect '*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi } QTINC=/usr/lib64/qt-3.3/include XDG_SESSION_ID=61251 AUTOCLUSCONF=/opt/gridview/clusconf/etc/autoconf.cfg BASH_FUNC_ml()=() { module ml "$@" } HISTSIZE=1000 PMIX_HOME=/opt/gridview/pmix CLUSCONF_HOME=/opt/gridview/clusconf MANPATH=/public/software/compiler/gcc/7.3.1/share/man:/public/software/mpi/intelmpi/2021.3.0/man:/public/software/compiler/intel/2021.3.0/documentation/en/man/common:/opt/gridview/pmix/share/pmix:/opt/gridview/slurm/share/man:/opt/gridview/munge/share/man:/opt/gridview/clusquota//man: _LMFILES_=/public/software/modules/compiler/intel/2021.3.0:/public/software/modules/mpi/intelmpi/2021.3.0:/public/software/modules/compiler/gcc/7.3.1 LOGNAME=test123 IPMICONF=/opt/gridview/clusconf/etc/ipmi.cfg HOME=/public/home/test123 MODULESHOME=/public/software/apps/module CMPLR_ROOT=/public/software/compiler/intel/2021.3.0 __MODULES_LMCONFLICT=compiler/intel/2021.3.0&compiler/intel:mpi/intelmpi/2021.3.0&mpi XDG_RUNTIME_DIR=/run/user/1004 SLURM_PMIX_DIRECT_CONN=true KDEDIRS=/usr STARTWAITTIME=300 NFSCONF=/opt/gridview/clusconf/etc/nfs.cfg CLASSPATH=/public/software/mpi/intelmpi/2021.3.0/lib/mpi.jar TERM=xterm FPATH=/public/software/compiler/intel/2021.3.0/compiler/include:/public/software/compiler/intel/2021.3.0/mkl/include:/public/software/compiler/intel/2021.3.0/tbb/include PERLLIB=/usr/lib/perl5/site_perl: SLURM_HOME=/opt/gridview/slurm I_MPI_ROOT=/public/software/mpi/intelmpi/2021.3.0 __MODULES_SHARE_MANPATH=:1 TBBROOT=/public/software/compiler/intel/2021.3.0/tbb PKG_CONFIG_PATH=/public/software/compiler/intel/2021.3.0/mkl/tools/pkgconfig QT_GRAPHICSSYSTEM_CHECKED=1 GRIDVIEW_HOME=/opt/gridview NLSPATH=/public/software/compiler/intel/2021.3.0/compiler/lib/intel64/locale/%l_%t/%N:/public/software/compiler/intel/2021.3.0/mkl/lib/intel64/locale/%l_%t/%N SLURM_PMIX_DIRECT_CONN_UCX=false MODULEPATH=/public/software/apps/module/modulefiles:/public/software/modules MUNGE_HOME=/opt/gridview/munge PERL5LIB=/usr/lib/perl5/site_perl:/public/home/test123/perl5/lib/perl5: __MODULES_LMINIT=module use --append /public/software/apps/module/modulefiles DISPLAY=localhost:10.0 XDG_DATA_DIRS=/public/home/test123/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share:/usr/share MKLROOT=/public/software/compiler/intel/2021.3.0/mkl BASH_FUNC__module_raw()=() { eval "$(/usr/bin/tclsh '/public/software/apps/module/libexec/modulecmd.tcl' bash "$@")"; _mlstatus=$?; return $_mlstatus } SSH_TTY=/dev/pts/1 HOSTNAME=admin1 SSH_CLIENT=172.17.75.128 3972 22 HISTCONTROL=ignoredups SHLVL=1 PWD=/public/home/test123/chenjh/software/petsc-3.14.6 FI_PROVIDER_PATH=/public/software/mpi/intelmpi/2021.3.0/libfabric/lib/prov PERL_MB_OPT=--install_base /public/home/test123/perl5 INFOPATH=/public/software/compiler/gcc/7.3.1/share/info MAIL=/var/spool/mail/test123 LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36: MODULES_CMD=/public/software/apps/module/libexec/modulecmd.tcl C_INCLUDE_PATH=/public/software/compiler/gcc/7.3.1/include/c++/7:/public/software/compiler/gcc/7.3.1/include/c++/7/x86_64-pc-linux-gnu:/opt/gridview/pmix/include:/opt/gridview/slurm/include:/opt/gridview/munge/include ================================================================================ TEST resetEnvCompilers from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:1915) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1915) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:1945) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1945) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:1878) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1878) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:1899) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1899) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkInitialFlags from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:479) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:479) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPCCFLAGS to Initialized HIPCCFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to -Wno-deprecated-gpu-targets Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPCC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:660) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:660) Locate a functional C compiler Checking for program /public/software/compiler/gcc/7.3.1/bin/mpicc...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/mpicc...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/mpicc...found Defined make macro "CC" to "mpicc" All intermediate test results are stored in /tmp/petsc-sMhvLh All intermediate test results are stored in /tmp/petsc-sMhvLh/config.setCompilers Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.setCompilers/conftest /tmp/petsc-sMhvLh/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.setCompilers/conftest /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.setCompilers/conftest /tmp/petsc-sMhvLh/config.setCompilers/conftest.o Testing executable /tmp/petsc-sMhvLh/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-sMhvLh/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-sMhvLh/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: mpicc --version stdout: gcc (GCC) 7.3.1 20180303 (Red Hat 7.3.1-5) Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ================================================================================ TEST checkCPreprocessor from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:699) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:699) Locate a functional C preprocessor Checking for program /public/software/compiler/gcc/7.3.1/bin/mpicc...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/mpicc...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/mpicc...found Defined make macro "CPP" to "mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkCUDACompiler from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:735) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:735) Locate a functional CUDA compiler Checking for program /public/software/compiler/gcc/7.3.1/bin/nvcc...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/nvcc...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/nvcc...not found Checking for program /public/software/compiler/intel/2021.3.0/bin/intel64/nvcc...not found Checking for program /public/software/compiler/intel/2021.3.0/mkl/bin/intel64/nvcc...not found Checking for program /usr/lib64/qt-3.3/bin/nvcc...not found Checking for program /opt/gridview/pmix/bin/nvcc...not found Checking for program /opt/gridview/pmix/sbin/nvcc...not found Checking for program /public/home/test123/perl5/bin/nvcc...not found Checking for program /public/software/apps/module/bin/nvcc...not found Checking for program /opt/gridview/slurm/bin/nvcc...not found Checking for program /opt/gridview/slurm/sbin/nvcc...not found Checking for program /opt/gridview/munge/bin/nvcc...not found Checking for program /opt/gridview/munge/sbin/nvcc...not found Checking for program /opt/gridview/clusquota//bin/nvcc...not found Checking for program /opt/gridview/clusquota//sbin/nvcc...not found Checking for program /opt/gridview/clusconf/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /usr/local/sbin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /public/home/test123/.local/bin/nvcc...not found Checking for program /public/home/test123/bin/nvcc...not found Checking for program /public/home/test123/chenjh/software/petsc-3.14.6/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['c++', 'gcc-nm', 'x86_64-pc-linux-gnu-gcc-ar', 'gfortran', 'x86_64-pc-linux-gnu-gcc-nm', 'x86_64-pc-linux-gnu-c++', 'gcov-tool', 'x86_64-pc-linux-gnu-gcc', 'gcov-dump', 'x86_64-pc-linux-gnu-gcc-ranlib', 'gcc-ranlib', 'cpp', 'x86_64-pc-linux-gnu-gfortran', 'gcc', 'gcov', 'x86_64-pc-linux-gnu-gcc-7', 'gcc-ar', 'x86_64-pc-linux-gnu-g++', 'g++'] ['fi_pingpong', 'fi_info'] ['mpif90', 'mpicc', 'IMB-NBC', 'mpiicpc', 'impi_info', 'mpigxx', 'hydra_pmi_proxy', 'IMB-MPI1', 'mpicxx', 'tune', 'mpiexec.hydra', 'mpiexec', 'mpitune_fast', 'cpuinfo', 'mpiicc', 'hydra_bstrap_proxy', 'tune_fast', 'hydra_nameserver', 'mpifc', 'IMB-MPI1-GPU', 'IMB-P2P', 'mpirun', 'mpitune', 'mpif77', 'IMB-RMA', 'mpiifort', 'mpigcc', 'IMB-MT'] ['xild.cfg', 'proforder', 'icc.cfg', 'map_opts', 'fortcom', 'mcpcom', 'icc', 'ifort.cfg', 'fpp', 'tselect', 'icpc', 'libcilkrts.so.5', 'xild', 'xiar', 'xiar.cfg', 'profmerge', 'profmergesampling', 'profdcg', 'codecov', 'ifort', 'icpc.cfg'] ['mkl_link_tool'] [] ['pps', 'pmix_info', 'plookup', 'pevent'] Warning accessing /opt/gridview/pmix/sbin gives errors: [Errno 2] No such file or directory: '/opt/gridview/pmix/sbin' Warning accessing /public/home/test123/perl5/bin gives errors: [Errno 2] No such file or directory: '/public/home/test123/perl5/bin' ['modulecmd', 'add.modules', 'mkroot', 'envml'] ['sbatch', 'sinfo', 'sattach', 'strigger', 'sdiag', 'sprio', 'pestat', 'salloc', 'smap', 'sreport', 'sstat', 'sacctmgr', 'scontrol', 'squeue', 'srun', 'sshare', 'scancel', 'sbcast', 'sacct'] ['slurmstepd', 'slurmd', 'slurmctld', 'slurmdbd'] ['unmunge', 'remunge', 'munge'] ['munged'] ['gdeposit', 'grmalloc', 'glsmachine', 'grmjob', 'gcharge', 'greserve', 'gbalance', 'gusage', 'gchuser', 'grmmachine', 'gchjob', 'glstxn', 'gmkuser', 'gtransfer', 'gmkproject', 'grmuser', 'gchaccount', 'mybalance', 'glsalloc', 'gchmachine', 'goldsh', 'gquote', 'glsjob', 'grmquote', 'glsproject', 'gchres', 'gmkmachine', 'gchpasswd', 'gstatement', 'gchproject', 'grmproject', 'gchalloc', 'glsres', 'gchquote', 'gmkjob', 'gmkaccount', 'grmaccount', 'grmres', 'grefund', 'glsaccount', 'gwithdraw', 'glsuser', 'glsquote'] ['goldd', 'sqlite'] ['rpdcp', 'pdsh', 'clusconf-uninstall', 'sshpass', 'clusbak', 'clusconf', 'dshbak', 'pdcp'] [] ['gcov', 'base64', 'audit2allow', 'findsmb', 'sum', 'gvfs-rm', 'nl-route-add', 'red', 'ps2epsi', 'nepomuk-rcgen', 'ncursesw5-config', 'db_upgrade', 'upower', 'iecset', 'imsettings-switch', 'pmieconf', 'h5repart', 'onto2vocabularyclass', 'pkill', 'sg_decode_sense', 'lsusb.py', 'ciptool', 'ypwhich', 'ps2pdf13', 'pomdump', 'journalctl', 'dbus-update-activation-environment', 'setpriv', 'compile_et', 'abrt-action-analyze-python', 'akregatorstorageexporter', 'firewall-config', 'lpr.cups', 'zcat', 'ping', 'rnano', 'mcookie', 'umount', 'git-shell', 'scrollkeeper-uninstall', 'mlxfwstress', 'mkhybrid', 'charmap', 'cifsdd', 'dltest', 'pg_dumpall', 'fusermount', 'nl-neightbl-list', 'akonadi_agent_launcher', 'mapscrn', 'bashbug-64', 'qdoc', 'analog', 'dbpmda', 'python2.7-config', 'qtplugininfo-qt5', 'sudoreplay', 'kill', 'sg_safte', 'mlxtrace_ext', 'dumpiso', 'dump2slvl.pl', 'db47_deadlock', 'abrt-action-save-kernel-data', 'gmt', 'ucx_perftest', 'xsetwacom', 'xzmore', 'sg_verify', 'systemd-hwdb', 'coverage2', 'xdg-desktop-icon', 'evolution', 'genisoimage', 'ktimetracker', 'gnome-tweaks', 'mlnx_conf_mgr.sh', 'cgcreate', 'pscp', 'msguniq', 'hangul', 'xsetroot', '8211view', 'ypcat', 'pmdate', 'isogmt', 'mountpoint', 'more', 'btt', 'mkmanifest', 'alsatplg', 'fc-match', 'lsusb', 'meinproc4_simple', 'snice', 'gdal_grid', 'touch', 'dbus-binding-tool', 'anaconda-cleanup', 'mac2unix', 'spent', 'mv', 'gucharmap', 'vmware-namespace-cmd', 'qdbusviewer-qt5', 'hwloc-ls', 'mcopy', 'tailf', 'panelctl', 'byacc', 'brltty-ttb', 'sftp', 'sane-find-scanner', 'xrefresh', 'bittorrent-console', 'pkla-check-authorization', 'kbackgroundsnapshot', 'slabtop', 'sim_client', 'tcumttest', 'gst-feedback', 'sbcdec', 'sg_get_config', 'piconv', 'teamdctl', 'db_verify', 'sg_ses', 'nfs4_editfacl', 'rdma_client', 'gnatclean', 'pkcheck', 'gdalsrsinfo', 'accountwizard', 'nl-neigh-delete', 'pmprobe', 'kde4-config', 'boltctl', 'cancel', 'bootctl', 'unpack200', 'mstresourcedump', 'pldd', 'akonadi_nepomuktag_resource', 'kmimetypefinder', 'ranlib', 'sg_ident', 'catman', 'ib_atomic_lat', 'pg_receivexlog', 'merge', 'gvfs-mime', 'i2c', 'ksshaskpass', 'dvd+rw-booktype', 'si_mkautoinstallcd', 'locale', 'gdalserver', 'gresource', 'targetclid', 'ksu', 'createdb', 'akonadi_kdeaccounts_resource', 'setserial', 'zforce', 'xzgrep', 'uz', 'ypchsh', 'ptardiff', 'debuginfo-install', 'cdda2ogg', 'dvd-ram-control', 'auvirt', 'pm-is-supported', 'printf', 'purple-remote', 'envsubst', 'gdaladdo', 'xml_merge', 'okular', 'sopranocmd', 'pax', 'groff', 'ffmpeg', 'sessreg', 'telepathy-gabble-xmpp-console', 'on_ac_power', 'eu-ar', 'ssh-keyscan', 'dwp', 'lpstat.cups', 'kstart', 'xzdiff', 'canberra-boot', 'hciattach', 'withsctp', 'sss_ssh_knownhostsproxy', 'pmlc', 'kwin', 'cscope', 'gnome-keyring-3', 'xmlpatternsvalidator-qt5', 'rcsdiff', 'dc', 'sgmlspl', 'cpanp', 'setfacl', 'start-pulseaudio-x11', 'csplit', 'pmap', 'cancel.cups', 'ibus-setup', 'funzip', 'modifyrepo', 'VGAuthService', 'ldns-zsplit', 'mstflint', 'mcd', 'zipdetails', 'chsh', 'id', 'pmjson', 'egrep', 'cpancover', 'kblankscrn.kss', 'stty', 'rmail', 'kde-mv', 'mlxreg', 'aclocal', 'abrt-action-analyze-oops', 'gcc', 'ypmatch', 'pstree', 'hivexget', 'rescan-scsi-bus.sh', 'dbwrap_tool', 'celtenc051', 'gneqn', 'enscript', 'POST', 'ngettext', 'kreadconfig', 'igawk', 'mysqladmin', 'xml-resolver', 'qdbus-qt5', 'svnrdump', 'pango-view', 'gupnp-dlna-info-2.0', 'autoheader', 'fc-cache-64', 'flatpak', 'getopts', 'mget_temp_ext', 'hmac256', 'selfsign-getcert', 'over', 'remote-viewer', 'psed', 'lz', 'rcs', 'bluedevil-monolithic', 'intltool-merge', 'ppdmerge', 'nail', 'calibrate_ppa', 'grub2-script-check', 'vimdiff', 'play', 'blktrace', 'lastb', 'mysql_plugin', 'db47_checkpoint', 'h52gif', 'ldns-chaos', 'oparchive', 'kglobalaccel', 'pasuspender', 'rarian-sk-migrate', 'ogdi_import', 'keyrand', 'imsettings-info', 'loadunimap', 'akonadictl', 'mysqltest', 'ktelnetservice', 'verifytree', 'rpmbuild', 'padsp-32', 'osinfo-query', 'xzfgrep', 'addr2line', 'ps2pdf14', 'analysis.py', 'cd', 'ps2pdfwr', 'aconnect', 'mousetweaks', 'gnome-thumbnail-font', 'systemd-path', 'sha512sum', 'mstop', 'ib_read_lat', 'qemu-io', 'tmon', 'ksysguard', 'h2xs', 'lupdate-qt5', 'mlxfwmanager', 'sleep', 'mdig', 'rstream', 'mysqlcheck', 'ntpstat', 'crywrap', 'gedit', 'p11-kit', 'gdb-add-index', 'tclsh8.5', 'unix-lpr.sh', 'prove', 'cgexec', 'colrm', 'cs2cs', 'blkiomon', 'kcmshell4', 'htdigest', 'ping6', 'podselect', 'bzmore', 'ldns-compare-zones', 'totem-video-thumbnailer', 'pkcon', 'targetctl', 'akonadi_nepomuk_feeder', 'mobj_dump', 'kdepasswd', 'grepdiff', 'h5redeploy', 'dtestcm', 'grub2-mkimage', 'test_version', 'khotnewstuff-upload', 'ul', 'h5unjam', 'scsi_temperature', 'applydeltarpm', 'xprop', 'chcon', 'invproj', 'libinput-list-devices', 'stedump', 'padsp', 'pmgenmap', 'secret-tool', 'lsipc', 'truncate', 'db47_stat', 'perldoc', 'geoipupdate', 'nm-online', 'tracepath6', 'tcatest', 'iptables-xml', 'akonadi_nntp_resource', 'showkey', 'mlxmcg', 'gdbus-codegen', 'nsupdate', 'flex', 'seahorse', 'numastat', 'satyr', 'grub2-mkfont', 'mandb', 'kmenuedit', 'bc', 'klist', 'free', 'isdv4-serial-inputattach', 'iodbctestw', 'slabinfo', 'spice-vdagent', 'kget', 'shell-quote', 'gsl-histogram', 'empathy-accounts', 'ssh-agent', 'pgawk', 'ed', 'gcalccmd', 'sdp_long_message', 'lpq', 'kruler', 'ibdiagm.sh', 'crash', 'appstream-util', 'logfactor5', 'enchant-lsmod', 'cd-iccdump', 'svnsync', 'echo', 'geqn', 'update-ca-trust', 'vmware-toolbox-cmd', 'ssltap', 'zvbi-chains', 'mokutil', 'false', 'sg_readcap', 'syslinux', 'keyutil', 'urlgrabber', 'sg_read_long', 'msgen', 'gnome-system-monitor', 'lppasswd', 'abrt-action-trim-files', 'quotasync', 'knotify4', 'link', 'deallocvt', 'eu-size', 'gcc-nm', 'systemd-nspawn', 'cover', 'fgconsole', 'ctags', 'system-config-abrt', 'gvfs-set-attribute', 'systemd-escape', 'redhat_lsb_init', 'pmlogmv', 'kjscmd', 'l2ping', 'HEAD', 'dvd+rw-format', 'certmaster-getcert', 'uxterm', 'mysql_setpermission', 'rx', 'machinectl', 'sotruss', 'btrecord', 'gupnp-dlna-ls-profiles-2.0', 'nearblack', 'mbadblocks', 'sg_rtpg', 'rpm', 'locate', 'xml_spellcheck', 'update-mime-database', 'traceroute', 'ldns-keygen', 'db47_archive', 'btmon', 'gethostip', 'makedb', 'fc', 'rediff', 'db47_hotbackup', 'rsvg-convert', 'gpgsplit', 'gio-querymodules-64', 'du', 'mlxfwstress_ext', 'grub2-glue-efi', 'gtk-query-immodules-3.0-64', 'systemsettings', 'sgmlnorm', 'brltty-ctb', 'kdeinit4_shutdown', 'pdftohtml', 'rarian-sk-get-scripts', 'getkeycodes', 'ssh', 'gmt_shell_functions.sh', 'traceroute6', 'nad2bin', 'ab', 'systemd-loginctl', 'grub2-fstest', 'ndptool', 'sg_get_lba_status', 'cg_annotate', 'ppdhtml', 'seq', 'detect_ppa', 'msgmerge', 'gettext.sh', 'vdoreadonly', 'dmesg', 'solid-action-desktop-gen', 'osx', 'scrollkeeper-get-cl', 'ldns-dpa', 'yumdownloader', 'dgawk', 'gwenview_importer', 'targetcli', 'pflags', 'eu-stack', 'ms_print', 'fc-cat', 'sound_dump', 'scrollkeeper-preinstall', 'run-parts', 'ospcat', 'mlxreg_ext', 'qhelpconverter-qt5', 'xzdec', 'ypdomainname', 'kbuildsycoca4', 'gsl-config', 'systemd-detect-virt', 'sprof', 'ldns-key2ds', 'compress', 'xdg-screensaver', 'fc-conflist', 'mrd', 'brasero', 'testlibraw', 'gpg', 'tpmtool', 'ogrinfo', 'qmlmin-qt5', 'msginit', 'mtype', 'glib-genmarshal', 'sg_map', 'kbd_mode', 'mlxi2c', 'run_perftest_loopback', 'sha224sum', 'scrollkeeper-get-toc-from-docpath', 'hwloc-assembler-remote', 'vim', 'filterdiff', 'mlx_fpga_ext', 'perlcritic', 'pmloglabel', 'iodbctest', 'plasma-netbook', 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'gpk-update-viewer', 'wall', 'xdriinfo', 'gencat', 'kiconfinder', 'createlang', 'svnversion', 'db47_printlog', 'mdu', 'cg_diff', 'pnm2ppa', 'pbm2ppa', 'gcm-viewer', 'vmware-rpctool', 'psfxtable', 'xhost', 'unicode_start', 'c99', 'yum-groups-manager', 'repo-rss', 'pr', 'btreplay', 'btrace', 'rdfproc', 'rcsmerge', 'bond2team', 'ktutil', 'groups', 'mysql_upgrade', 'isohybrid', 'fc-query', 'gtester-report', 'connection_recovery', 'updatedb', 'mkfontdir', 'gpg-zip', 'png2theora', 'servicemenuinstallation', 'cd-read', 'kswitch', 'elfedit', 'find2perl', 'ld', 'akregator', 'X', 'sg_luns', 'icotool', 'nl-class-delete', 'ri', 'xwininfo', 'syndaemon', 'qmllint', 'nm', 'cupstestppd', 'readmult', 'festival_server', 'gzexe', 'cpanp-run-perl', 'trace-cmd', 'smbspool', 'ibv_uc_pingpong', 'ib_send_bw', 'gsdj', 'kinit', 'bccmd', 'whoami', 'xargs', 'kde4-menu', 'shuf', 'yum-builddep', 'linguist-qt5', 'rarian-example', 'gnome-shell-perf-tool', 'nmcli', 'cue2toc', 'eu-readelf', 'vmware-hgfsclient', 'nf-log', 'xinit', 'rarian-sk-extract', 'qemu-ga', 'vi', 'h5copy', 'glib-compile-schemas', 'xmlcatalog', 'infokey', 'gfortran', 'db_archive', 'chainsaw', 'package-cleanup', 'mtserver', 'nccopy', 'sg_inq', 'xdg-user-dirs-update', 'kdumpctl', 'hdmv_test', 'fribidi', 'interdiff', 'reindexdb', 'pmval', 'tcbtest', 'readlink', 'strace-log-merge', 'sg_rmsn', 'nettle-lfib-stream', 'nl-list-sockets', 'dirname', 'tload', 'nl-cls-add', 'tcamttest', 'db47_verify', 'isosize', 'sg_map26', 'gdal_contour', 'gslp', 'easy_install', 'sweeper', 'ppdc', 'h5diff', 'orbd', 'btattach', 'setarch', 'plasmapkg', 'rpmkeys', 'mmount', 'sh', 'mixartloader', 'osgmlnorm', 'latrace-ctl', 'yes', 'podlint', 'gmake', 'grub2-mkstandalone', 'grub2-syslinux2cfg', 'gnome-keyring-daemon', 'vorbiscomment', 'nautilus-desktop', 'eu-strings', 'hpijs', 'mmcli', 'servicemenudeinstallation', 'brltty-install', 'nl-qdisc-add', 'drill', 'mc-tool', 'kstartupconfig4', 'lstopo-no-graphics', 'flint', 'systemd-stdio-bridge', 'gprof', 'mcheck', 'ipmi_ui', 'sg_vpd', 'nl-class-add', 'eps2eps', 'umap', 'gnome-disk-image-mounter', '[', 'udpong', 'ldns-walk', 'ical2vcal', 'virt-manager', 'paperconf', 'nf-monitor', 'vcut', 'join', 'kinfocenter', 'systemd-analyze', 'make', 'automake', 'xdg-open', 'loginctl', 'gnome-dictionary', 'vncpasswd', 'watch', 'mysql', 'virt-viewer', 'metacity-message', 'gtk-update-icon-cache', 'rvim', 'kmixctrl', 'chmem', 'newaliases.postfix', 'kaddressbookmigrator', 'qmleasing', 'cgget', 'psfaddtable', 'mshowfat', 'itrace', 'gnome-character-map', 'cmp', 'chardetect', 'ncurses5-config', 'unlz4', 'hciconfig', 'gst-launch-0.10', 'od', 'xorg-x11-fonts-update-dirs', 'gnatfind', 'intltoolize', 'nl-neigh-list', 'cscope-indexer', 'nroff', 'sar', 'glxinfo', 'attr', 'WebKitWebDriver', 'nl', 'secon', 'libnetcfg', 'sctp_status', 'editdiff', 'alt-java', 'ibus', 'openipmi_eventd', 'ib_write_lat', 'odbcinst', 'opimport', 'kaddressbook', 'libbluray_test', 'xzegrep', 'soelim', 'setterm', 'dropdb', 'pmdumplog', 'findrule', 'rebuild-jar-repository', 'nisdomainname', 'tchmgr', 'ldns-version', 'lsscsi', 'logview', 'gpk-log', 'ibdiagpath', 'pulseaudio', 'paps', 'libgcrypt-config', 'raw_ethernet_fs_rate', 'ophelp', 'neqn', 'tsort', 'cdrecord', 'systemd-firstboot', 'gconftool-2', 'qcatool2', 'dbus-send', 'nl-link-set', 'xsetmode', 'abrt-merge-pstoreoops', 'simc_lsmplugin', 'bzdiff', 'cairo-sphinx', 'virt-host-validate', 'ptar', 'kcheckrunning', 'tclsh', 'cpanm', 'report-cli', 'oLschema2ldif', 'strip', 'kpasswd', 'nl-addr-add', 'ldns-keyfetcher', 'cd-paranoia', 'pidstat', 'keytool', 'gtbl', 'rmiregistry', 'abs2rel', 'torrentinfo-console', 'dnsdomainname', 'teamnl', 'rsvg-view-3', 'totem', 'cpio', 'ptaskset', 'uptime', 'qt-faststart', 'a2p', 'fc-pattern', 'fold', 'text2wave', 'rpmsign', 'kfmclient', 'systemd-tty-ask-password-agent', 'db_printlog', 'amidi', 'sim_lsmplugin', 'tabs', 'gst-xmlinspect', 'dos2unix', 'rmid', 'openal-info', 'thor', 'ldns-test-edns', 'gst-feedback-0.10', 'ogg123', 'libpng-config', 'qemu-img', 'pacmd', 'alsaucm', 'java', 'mount', 'kdesu', 'pyinotify', 'bluedevil-sendfile', 'httxt2dbm', 'mdel', 'sg_senddiag', 'lsb_release', 'mdevices_info', 'gnome-software', 'maketorrent', 'rarian-sk-get-content-list', 'mysqlhotcopy', 'systemd-cgtop', 'vinagre', 'sg_read', 'xdpyinfo', 'raw_ethernet_lat', 'loadkeys', 'akonadi2xml', 'login', 'postmaster', 'gnat', 'krfb', 'zgrep', 'nepomukserver', 'myisamlog', 'xzcat', 'gstack', 'python2', 'pdfdetach', 'nepomukbackup', 'rhythmbox-client', 'si_clusterconfig', 'kfilemetadatareader', 'reposync', 'kdostartupconfig4', 'db_load', 'perlver', 'qmlimportscanner', 'install', 'ofed_rpm_info', 'pod2html', 'vncconfig', 'amixer', 'ci', 'systemctl', 'kmail-migrator', 'ipa-getcert', 'chown', 'xkbcomp', 'ibv_devices', 'libpng15-config', 'pinentry-curses', 'mkisofs', 'kapplymousetheme', 'pkttyagent', 'mlxdump', 'lz4c', 'consolehelper', 'cal', 'sg_sanitize', 'oxygen-demo', 'ogdi_info', 'osinfo-db-path', 'ldnsd', 'nfs4_setfacl', 'mysql_tzinfo_to_sql', 'policyeditor', 'empathy-debugger', 'lastcomm', 'ldns-rrsig', 'timedatectl', 'sexp-conv', 'op-check-perfevents', 'nl-link-list', 'gtar', 'install-printerdriver', 'xstdcmap', 'gdmflexiserver', 'tgz', 'ipcmk', 'rvi', 'kgpg', 'sg_opcodes', 'pdf2dsc', 'mlxcables_ext', 'podchecker', 'virt-top', 'gnatkr', 'resize', 'perlivp', 'clear', 'renice', 'kbdinfo', 'kde-open', 'msgconv', 'qmltestrunner', 'nsenter', 'toc2cue', 'sg_sat_phy_event', 'ksplashqml', 'dwz', 'akonadi_microblog_resource', 'chattr', 'kshell4', 'gnome-abrt', 'db47_codegen', 'showconsolefont', 'pcre-config', 'opcontrol', 'scrollkeeper-update', 'kcolorchooser', 'ffserver', 'akonadiserver', 'rpm2cpio', 'gdalenhance', 'rpmspec', 'qml', 'hcidump', 'ibnlparse', 'scl_source', 'cgsnapshot', 'lwp-dump', 'lrelease-qt5', 'perl5.16.3', 'utmpdump', 'sgp_dd', 'vgdb', 'x86_energy_perf_policy', 'tctmttest', 'gem', 'msghack', 'paste', 'ogginfo', 'vmware-user', 'gcm-picker', 'sudo', 'ccache-swig', 'gnome-session-quit', 'sg_write_same', 'ibdump', 'grl-launch-0.3', 'lssubsys', 'mkrfc2734', 'pamon', 'gst-xmlinspect-0.10', 'kdebugdialog', 'fc-scan', 'msgcmp', 'kde-cp', 'sdp_run_test', 'firewall-cmd', 'rsync', 'yum', 'wc', 'c2ph', 'seapplet', 'gettextize', 'openipmish', 'cmtime', 'pphs', 'gzip', 'alsa-delay', 'nl-monitor', 'gnutls-cli', 'cpupower', 'update-gtk-immodules', 'libtool', 'karm', 'localectl', 'logger', 'lprm.cups', 'eu-findtextrel', 'gvfs-save', 'mesg', 'myisampack', 'pk12util', 'teamd', 'plasma-windowed', 'mzip', 'ldns-notify', 'pwscore', 'psfstriptable', 'cups-calibrate', 'invgeod', 'nohup', 'sg_unmap', 'maketext', 'mknod', 'linux-boot-prober', 'kres-migrator', 'oldfind', 'fixqt4headers.pl', 'qmlscene', 'wvdial', 'gvfs-mount', 'bdftruncate', 'mlxcables', 'rhythmbox', 'hwloc-assembler', 'droplang', 'host', 'basename', 'osinfo-db-validate', 'amuFormat.sh', 'implantisomd5', 'abrt-action-analyze-vmcore', 'createuser', 'vdoprepareupgrade', 'test', 'gpgparsemail', 'pchrt', 'gpgv2', 'verify_blkparse', 'akonaditray', 'write', 'lsmem', 'bzip2recover', 'pmstore', 'kbdrate', 'bashbug', 'cdda2wav', 'tty', 'batch', 'systemd-tmpfiles', 'meinproc4', 'gnome-calculator', 'regdiff', 'akonadi_mixedmaildir_resource', 'mlxuptime', 'rview', 'setmetamode', 'f95', 'gpk-prefs', 'itweb-settings.itweb', 'aria_dump_log', 'clean-binary-files', 'setleds', 'scsi_start', 'gnome-session', 'sctp_test', 'bno_plot.py', 'gnutls-serv', 'xml2-config', 'reporter-upload', 'fprintd-list', 'sg_copy_results', 'ppdpo', 'glib-mkenums', 'pinentry-qt', 'xmlpretty', 'eu-addr2line', 'hex2hcd', 'uncompress', 'at', 'qmi-network', 'pmdiff', 'strings', 'bzcat', 'csslint-0.6', 'pathchk', 'scsi_satl', 'python2.7', 'alsaunmute', 'ldns-nsec3-hash', 'raw_ethernet_bw', 'gdalmanage', 'gdk-pixbuf-thumbnailer', 'h5fc-64', 'gvfs-ls', 'h5c++', 'flite_time', 'ogrlineref', 'migspeed', 'script', 'ksnapshot', 'pdfimages', 'certtool', 'dracut', 'wish8.5', 'wvdialconf', 'kuser', 'grub2-mklayout', 'aria_ftdump', 'arecordmidi', 'imsettings-reload', 'akonadi_openxchange_resource', 'ssh-add', 'pl2pm', 'python2-config', 'toe', 'xev', 'kmix', 'pre-grohtml', 'taskset', 'patch', 'ipa', 'pmsocks', 'zless', 'lscgroup', 'synclient', 'odbc_config', 'cd-it8', 'gendiff', 'scrollkeeper-gen-seriesid', 'objdump', 'uniq', 'mysqld_safe_helper', 'zsh', 'gtroff', 'gnome-contacts', 'geoiplookup', 'sdrcomp', 'killall', 'scl', 'aplay', 'infocmp', 'sudoedit', 'xsltproc', 'svnlook', 'ncgen', 'GET', 'nl-tctree-list', 'gst-inspect', 'akonadi_localbookmarks_resource', 'lpstat', 'pminfo', 'mcra', 'flite', 'proj', 'gio', 'pmstat', 'sg_compare_and_write', 'ksystemlog', 'qml-qt5', 'krunner', 'strace', 'nice', 'memhog', 'pdffonts', 'sg_xcopy', 'setup-nsssysinit', 'enchant', 'sndfile-resample', 'akonadi_invitations_agent', 'm4', 'perror', 'dstat', 'gunzip', 'combinedeltarpm', 'grep', 'gnome-keyring', 'kdf', 'scriptreplay', 'konsoleprofile', 'testgdbm', 'gnome-shell-extension-prefs', 'ldns-zcat', 'qmicli', 'scp', 'newuidmap', 'notify-send', 'kdestroy', 'dconf', 'sg_start', 'lchfn', 'ps2ascii', 'gdm-screenshot', 'db47_recover', 'akonadi_mailtransport_dummy_resource', 'ifnames', 'chacl', 'ark', 'gdaldem', 'setfont', 'msgfmt', 'escputil', 'lsns', 'modutil', 'solterm', 'realpath', 'itweb-settings', 'xdg-desktop-menu', 'virt-install', 'pg_restore', 'checkpolicy', 'diffpp', 'pod2usage', 'gatttool', 'extresso', 'findmnt', 'pssh-askpass', 'vncserver_wrapper', 'spice-streaming-agent', 'vdo-by-dev', 'sdiff', 'testepsg', 'kwalletd', 'gdalwarp', 'bdsplice', 'latrace', 'kwrite', 'mkafmmap', 'kabcclient', 'abrt-action-generate-backtrace', 'rarian-sk-update', 'sha1sum', 'postgresql-check-db-dir', 'ogrtindex', 'plistutil', 'yapp', 'fmt', 'xdg-icon-resource', 'certutil', 'solid-hardware', 'memdiskfind', 'gsnd', 'mmd', 'mysqld_safe', 'regtree', 'mckey', 'sctp_darn', 'lsdiff', 'luac', 'rename', 'dbus-launch', 'gst-xmllaunch-0.10', 'ptksh', 'ca-legacy', 'gnatchop', 'pg_ctl', 'nf-ct-add', 'pckt_drop', 'sginfo', 'startx', 'saytime', 'pbmtpg', 'pod2latex', 'mstmtserver', 'update-desktop-database', 'idn', 'libinput', 'mstregdump', 'lprsetup.sh', 'dbus-uuidgen', 'plasma-overlay', 'tracker', 'imsettings-list', 'stunbdc', 'ksshell', 'fc-validate', 'ksverdiff', 'unalias', 'uuidgen', 'ibdmchk', 'hcitool', 'policytool', 'gst-typefind', 'logresolve', 'zipnote', 'fprintd-delete', 'keditbookmarks', 'flint_ext', 'resolve_stack_dump', 'sg_modes', 'aec', 'influx_stress', 'vmtoolsd', 'file-roller', 'influx_tsm', 'reset', 'parec', 'si_pushoverrides', 'kcharselect', 'valgrind-listener', 'sync', 'cd-info', 'launchmany-console', 'gettext', 'mstprivhost', 'pod_cover', 'pnuke', 'gnome-boxes', 'sg_format', 'htmltree', 'rcsfreeze', 'autoreconf', 'shred', 'grub2-menulst2cfg', 'diffstat', 'isoinfo', 'si_pcp', 'bundle', 'ltrace', 'ibv_ud_pingpong', 'perl', 'db_deadlock', 'nc', 'htpasswd', 'pstruct', 'usbhid-dump', 'systemd-ask-password', 'pmevent', 'stapbpf', 'git', 'netaddr', 'influx_inspect', 'pwhich', 'cpan', 'kdeinit4_wrapper', 'atrm', 'xdg-settings', 'grub2-render-label', 'akonadi_maildispatcher_agent', 'tkjpeg', 'ldns-read-zone', 's2p', 'sdpscanner', 'gdal_rasterize', 'h5ls', 'ibv_srq_pingpong', 'oggenc', 'pmtrace', 'msgexec', 'x0vncserver', 'nl-route-list', 'test_ppa', 'ksvalidator', 'mergerepo', 'gnome-shell-extension-tool', 'lp.cups', 'sg_scan', 'eu-elfcmp', 'nf-exp-delete', 'gpic', 'mysql_fix_extensions', 'dtrace', 'scrollkeeper-get-content-list', 'wqdump', 'systemd-machine-id-setup', 'curl-config', 'pmie2col', 'gsl-randist', 'diff', 'uuclient', 'setfattr', 'ibnetsplit', 'erb', 'python-config', 'psql', 'Xvnc', 'espeak', 'qtdiag', 'smbprint', 'col', 'coredumpctl', 'dehtmldiff', 'xinput', 'rarian-sk-gen-uuid', 'paplay', 'xdg-user-dir', 'sedismod', 'smbclient', 'samba-regedit', 'preparetips', 'sg', 'pinentry-gtk', 'hwloc-info', 'rpcclient', 'kioclient', 'qemu-nbd', 'gst-launch', 'flock', 'gtk-launch', 'foomatic-rip', 'pgrep', 'core_to_hca_dgx.sh', 'kfontinst', 'hwloc-calc', 'unicode_stop', 'pitchplay', 'ksflatten', 'smbtree', 'sbcinfo', 'dimax_init', 'gnome-session-selector', 'pkla-admin-identities', 'pmafm', 'si_psh', 'gnome-session-inhibit', 'xmvn-builddep', 'khotnewstuff4', 'shasum', 'spam', 'x86_64-redhat-linux-gcc', 'dir', 'cp', 'hunspell', 'nautilus', 'ipmish', 'nl-qdisc-list', 'mailq', 'ib_write_bw', 'msgunfmt'] [] ['ipmidetectd', 'lsof', 'lvscan', 'lgroupadd', 'mount.nfs4', 'grub2-install', 'ibhosts', 'sosreport', 'xfs_copy', 'rpc.statd', 'atrun', 'setup_mr_cache.sh', 'automount', 'cupsfilter', 'mkfs.minix', 'xfs_mkfile', 'vgcreate', 'saned', 'grub2-ofpathname', 'mtr', 'si_installbtimage', 'tcpslice', 'cracklib-format', 'biosdevname', 'era_check', 'swaplabel', 'poweroff', 'pvck', 'rtcwake', 'sldd.sh', 'glusterfs', 'augenrules', 'lvdisplay', 'saslauthd', 'libvirtd', 'pwck', 'NetworkManager', 'chgpasswd', 'si_cpimage', 'postlog', 'set_irq_affinity_bynode.sh', 'cfdisk', 'useradd', 'nameif', 'sysctl', 'genl', 'grub2-reboot', 'update-smart-drivedb', 'sendmail.postfix', 'htcacheclean', 'usernetctl', 'virt-what', 'cache_restore', 'rpc.nfsd', 'smartd', 'thin_trim', 'delpart', 'rdma-ndd', 'ntpd', 'mkfs.vfat', 'lvmsadc', 'ib2ib_setup', 'lockdev', 'ypserv', 'xfs_rtcp', 'userhelper', 'dmstats', 'mount.nfs', 'fcoemon', 'lnewusers', 'iscsiadm', 'semodule', 'sasldblistusers2', 'lgroupmod', 'xfs_metadump', 'reboot', 'dhclient-script', 'lvextend', 'in.tftpd', 'postalias', 'dosfslabel', 'ntsysv', 'adcli', 'grub2-macbless', 'nfsdcltrack', 'ModemManager', 'chkconfig', 'iscsi-iname', 'ibacm', 'mountstats', 'pwhistory_helper', 'ipa-client-install', 'iptables-restore', 'xfsinvutil', 'selinuxconlist', 'setsebool', 'ping6', 'ethtool', 'yppoll', 'blkmapd', 'ip6tables-restore', 'mlnx_bf_configure_ct', 'unix_update', 'lldptool', 'sfdisk', 'sedispatch', 'agetty', 'cma_roce_mode', 'tracepath6', 'newusers', 'lvrename', 'rtkitctl', 'pluginviewer', 'xfs_logprint', 'unsquashfs', 'fcrls', 'si_mvimage', 'resizepart', 'nologin', 'chroot', 'ibsysstat', 'dump-utmp', 'plymouth-set-default-theme', 'rmmod', 'sysctl_perf_tuning', 'e2image', 'sushell', 'xfs_quota', 'zvbid', 'consoletype', 'lsmod', 'setcap', 'cupsaccept', 'iscsiuio', 'dump_fts', 'vgimport', 'rpc.gssd', 'pm-suspend-hybrid', 'dm_dso_reg_tool', 'new-kernel-pkg', 'iconvconfig', 'ntpdate', 'selabel_partial_match', 'common_irq_affinity.sh', 'si_rmimage', 'luseradd', 'ip', 'matchpathcon', 'show_gids', 'mount.fuse', 'netreport', 'umount.udisks2', 'ibswitches', 'grub2-bios-setup', 'rdisc', 'usb_modeswitch', 'badblocks', 'dhcrelay', 'smtp-source', 'si_pushupdate', 'abrt-install-ccpp-hook', 'ipa-rmkeytab', 'abrt-harvest-vmcore', 'bpftool', 'ibroute', 'fcgistarter', 'key.dns_resolver', 'clockdiff', 'hwclock', 'gss-server', 'pvremove', 'vendor_post_uninstall.sh', 'route', 'hypervfcopyd', 'si_monitor_before', 'vgmknodes', 'brctl', 'sminfo', 'postlock', 'xfs_io', 'swapoff', 'nl-cls-list', 'zramctl', 'quot', 'pam_console_apply', 'dump_mfts.sh', 'nl-class-list', 'rpc.ypxfrd', 'pam_timestamp_check', 'pivot_root', 'ypset', 'dcbtool', 'check_lft_balance.pl', 'pppoe-discovery', 'lvmpolld', 'ntptime', 'tickadj', 'pvmove', 'ledctl', 'fsfreeze', 'firstboot', 'cache_writeback', 'cgclear', 'umount.nfs', 'genhostid', 'cache_check', 'ifcfg', 'liveinst', 'btrfs-map-logical', 'rtstat', 'rpcinfo', 'btrfs-find-root', 'vgrename', 'ipa-getkeytab', 'mdadm', 'selinuxdefcon', 'ifstat', 'set_irq_affinity_cpulist.sh', 'setroubleshootd', 'reject', 'cryptsetup', 'latencytop-tui', 'ledmon', 'pwunconv', 'ebtables', 'btrfstune', 'powertop', 'dhcpd', 'visudo', 'postconf', 'perfquery', 'ebtables-save', 'tc', 'lvmconfig', 'cups-browsed', 'alternatives', 'pvscan', 'thin_check', 'partprobe', 'si_mkdhcpserver', 'firewalld', 'request-key', 'ntpq', 'iprconfig', 'vmcore-dmesg', 'cache_dump', 'cbq', 'e2freefrag', 'ipsec', 'yumdb', 'usbmuxd', 'setregdomain', 'rtacct', 'plipconfig', 'accton', 'regdbdump', 'btrfs-debug-tree', 'modprobe', 'iptables-save', 'fstrim', 'abrt-auto-reporting', 'setpci', 'mlnx-sf', 'fsck.cramfs', 'dmeventd', 'ibfindnodesusing.pl', 'btrfs', 'si_mkclientnetboot', 'pm-hibernate', 'selabel_digest', 'ldattach', 'iw', 'fcnsq', 'build-locale-archive', 'findfs', 'partx', 'btrfs-image', 'ebtables-restore', 'lgroupdel', 'luserdel', 'semanage', 'wpa_supplicant', 'abrt-harvest-pstoreoops', 'thin_repair', 'latencytop', 'fdformat', 'cache_repair', 'cifs.upcall', 'tuned', 'blkdiscard', 'exportfs', 'wipefs', 'grub2-setpassword', 'capsh', 'raid-check', 'suexec', 'restorecon', 'nl-cls-delete', 'xfs_repair', 'postqueue', 'si_getimage_before', 'tracepath', 'postcat', 'cracklib-unpacker', 'postfix', 'pvresize', 'sss_cache', 'fxload', 'arpd', 'fsck.fat', 'atd', 'fdisk', 'glibc_post_upgrade.x86_64', 'vdptool', 'setup', 'fcoeadm', 'mkfs.ext3', 'cacertdir_rehash', 'vgscan', 'tcpdmatch', 'mlnx_tune', 'ifenslave', 'si_netbootmond', 'vpddecode', 'chpasswd', 'ip6tables-save', 'ipa-client-automount', 'e4defrag', 'avcstat', 'cifs.idmap', 'slattach', 'authconfig-tui', 'show_irq_affinity.sh', 'crda', 'ibccquery', 'ipmaddr', 'yptest', 'gdm', 'mkdict', 'cupsd', 'mkfs.fat', 'sendmail', 'cupsenable', 'saquery', 'ldconfig', 'losetup', 'routef', 'getpcaps', 'virtlogd', 'thin_metadata_size', 'vgcfgrestore', 'fixparts', 'radvd', 'pdata_tools', 'ibccconfig', 'lid', 'mpathpersist', 'ibdev2netdev', 'setenforce', 'quotaon', 'sgdisk', 'sktest', 'vgck', 'selinuxenabled', 'yum-complete-transaction', 'try-from', 'xfs_growfs', 'fuser', 'e2undo', 'si_pushinstall', 'rtpr', 'rotatelogs', 'grpconv', 'si_mkbootserver', 'nl-qdisc-delete', 'fatlabel', 'odp_stat.sh', 'ifup', 'install-info', 'iprinit', 'alsactl', 'selabel_lookup_best_match', 'tcpdump', 'si_mkautoinstallscript', 'lvconvert', 'lnstat', 'pam_tally2', 'oddjobd', 'mkfs.btrfs', 'si_monitortk', 'rpc.rquotad', 'dosfsck', 'dtorrent', 'clock', 'lvreduce', 'udevadm', 'xfsdump', 'efibootmgr', 'lvcreate', 'ifdown', 'iconvconfig.x86_64', 'vgsplit', 'ipmievd', 'rpcbind', 'testsaslauthd', 'setquota', 'insmod', 'modinfo', 'mke2fs', 'abrt-dbus', 'nl-classid-lookup', 'rpcdebug', 'pppstats', 'plymouthd', 'gssproxy', 'osd_login', 'bfb-install', 'selinuxexeccon', 'cupsaddsmb', 'mksquashfs', 'quotaoff', 'ibportstate', 'glusterfsd', 'btrfsck', 'si_addclients', 'chat', 'grub2-rpm-sort', 'sys-unconfig', 'zic', 'setfiles', 'lpinfo', 'iprupdate', 'nfsiostat', 'xtables-multi', 'logsave', 'hardlink', 'vgmerge', 'mlnx_affinity', 'nl-pktloc-lookup', 'pppd', 'ip6tables', 'pwconv', 'set_irq_affinity.sh', 'anaconda', 'unix_chkpwd', 'ss', 'ausearch', 'lchage', 'xfs_fsr', 'switch_root', 'smartctl', 'ibnetdiscover', 'postmulti', 'ibtracert', 'smparquery', 'mkhomedir_helper', 'ctstat', 'mkfs.ext4', 'ibsrpdm', 'sshd-keygen', 'update-alternatives', 'hwloc-dump-hwdata', 'xfs_freeze', 'pvs', 'vgs', 'bridge', 'si_mkdhcpstatic', 'thin_ls', 'si_getimage', 'weak-modules', 'ibclearcounters', 'cma_roce_tos', 'adduser', 'si_installbtimage_before', 'crond', 'xfs_admin', 'eapol_test', 'gluster', 'skdump', 'selinux_restorecon', 'init', 'era_dump', 'xfs_db', 'rpc.mountd', 'nfsstat', 'grub2-set-default', 'mkfs.xfs', 'runlevel', 'abrt-configuration', 'service', 'makedumpfile', 'rsyslogd', 'iprdbg', 'mkdosfs', 'getsebool', 'certmonger', 'chcpu', 'arp', 'usb_modeswitch_dispatcher', 'dmsetup', 'ibqueryerrors', 'lpadmin', 'show_counters', 'start-statd', 'iblinkinfo', 'grub2-probe', 'smtp-sink', 'rngd', 'kpatch', 'vendstat', 'accept', 'btrfs-zero-log', 'groupmems', 'umount.nfs4', 'logrotate', 'showmount', 'create-cracklib-dict', 'pm-utils-bugreport-info.sh', 'mkdumprd', 'hypervvssd', 'vgchange', 'iptables', 'fsck.minix', 'fsck.ext3', 'lpmove', 'sulogin', 'lshw', 'aureport', 'ibstatus', 'ifconfig', 'httpd', 'postmap', 'dhclient', 'vgcfgbackup', 'cgrulesengd', 'apachectl', 'sssd', 'shutdown', 'fsck.vfat', 'vgreduce', 'tuned-adm', 'ibstat', 'pvdisplay', 'resize2fs', 'genl-ctrl-list', 'grub2-mkconfig', 'thin_delta', 'cupsdisable', 'ypbind', 'packer', 'auditd', 'killall5', 'grpunconv', 'fixfiles', 'grubby', 'postkick', 'cups-genppd.5.2', 'devlink', 'fipvlan', 'lvchange', 'vgextend', 'lvresize', 'groupmod', 'pm-powersave', 'parted', 'lvmsar', 'debugfs', 'sestatus', 'installkernel', 'lpc.cups', 'btrfs-convert', 'nl-class-delete', 'hypervkvpd', 'safe_finger', 'dmfilemapd', 'alsabat-test.sh', 'redhat_lsb_trigger.x86_64', 'cgdcbxd', 'swapon', 'lpasswd', 'run_srp_daemon', 'update-pciids', 'si_mkbootpackage', 'nl-cls-add', 'ksmtuned', 'xfs_bmap', 'xfsrestore', 'tune2fs', 'iscsid', 'mii-diag', 'nl-qdisc-add', 'nl-class-add', 'edquota', 'depmod', 'vendor_pre_uninstall.sh', 'applygnupgdefaults', 'alsa-info', 'addpart', 'era_restore', 'ipset', 'smpdump', 'rdma', 'mkfs.msdos', 'e2fsck', 'pm-suspend', 'vgremove', 'tcsd', 'nstat', 'audispd', 'era_invalidate', 'filefrag', 'vgdisplay', 'vgconvert', 'mount.glusterfs', 'accessdb', 'groupadd', 'multipath', 'getcap', 'kexec', 'mount.cifs', 'iptunnel', 'quotacheck', 'netscsid', 'zdump', 'mkfs.cramfs', 'iotop', 'mlnx_bf_configure', 'xfs_mdrestore', 'smpquery', 'fsck.ext4', 'mkfs.ext2', 'dmidecode', 'sefcontext_compile', 'gdisk', 'thin_dump', 'selabel_lookup', 'wpa_cli', 'sa', 'si_monitor', 'alsa-info.sh', 'dnsmasq', 'btrfs-select-super', 'genhomedircon', 'dump_lfts.sh', 'cgdisk', 'paperconfig', 'lvm', 'abrtd', 'routel', 'xfs_info', 'fsck.btrfs', 'pethtool', 'ownership', 'lvmdump', 'ppp-watch', 'biosdecode', 'lpc', 'grub2-get-kernel-settings', 'nl-link-list', 'ibclearerrors', 'pppdump', 'ofed_uninstall.sh', 'rpc.yppasswdd', 'unbound-anchor', 'pvchange', 'halt', 'si_mkrsyncd_conf', 'ibcacheedit', 'intel-microcode2ucode', 'sshd', 'grub2-sparc64-setup', 'mii-tool', 'rtmon', 'ibrouters', 'sysinfo-snapshot.py', 'cracklib-check', 'mpathconf', 'faillock', 'compat_gid_gen', 'sim_server', 'groupdel', 'telinit', 'mkfs', 'avahi-daemon', 'virtlockd', 'xfs_estimate', 'yppush', 'blkdeactivate', 'lvremove', 'iprsos', 'lldpad', 'ipa-certupdate', 'show_irq_affinity_hints.sh', 'tcpd', 'fsck.ext2', 'fsck', 'uuserver', 'multipathd', 'usermod', 'ibping', 'osmtest', 'iscsistart', 'pidof', 'addgnupghome', 'saslpasswd2', 'convertquota', 'sgpio', 'blkid', 'dmevent_tool', 'dracut', 'grpck', 'dumpe2fs', 'dmraid', 'lspci', 'xqmstats', 'rshim', 'mklost+found', 'ether-wake', 'lvmconf', 'sm-notify', 'spice-vdagentd', 'radvdump', 'kpartx', 'extlinux', 'cgconfigparser', 'e2label', 'vipw', 'postsuper', 'arping', 'ctrlaltdel', 'xfs_ncheck', 'pvcreate', 'handle-sshpw', 'sln', 'cupsreject', 'autrace', 'anacron', 'chronyd', 'authconfig', 'abrt-server', 'pifconfig', 'auditctl', 'vgimportclone', 'thin_restore', 'lvmetad', 'ibidsverify.pl', 'dmraid.static', 'opensm', 'iprdump', 'fsck.msdos', 'postdrop', 'cupsctl', 'cups-genppdupdate', 'fsadm', 'realm', 'mdmon', 'ntpdc', 'fcping', 'getenforce', 'readprofile', 'lvmdiskscan', 'userdel', 'vigr', 'rpc.idmapd', 'lusermod', 'thin_rmap', 'ibaddr', 'nfsidmap', 'quotastats', 'rfkill', 'cache_metadata_size', 'cracklib-packer', 'srp_daemon', 'lvs', 'repquota', 'irqbalance', 'blockdev', 'runuser', 'ibnodes', 'ipa-join', 'fsck.xfs', 'vgexport', 'ntp-keygen', 'nl-qdisc-list', 'mkswap', 'load_policy', 'dump-acct', 'wpa_passphrase'] Warning accessing /public/home/test123/.local/bin gives errors: [Errno 2] No such file or directory: '/public/home/test123/.local/bin' Warning accessing /public/home/test123/bin gives errors: [Errno 2] No such file or directory: '/public/home/test123/bin' Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /public/home/test123/chenjh/software/petsc-3.14.6/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: [Errno 2] No such file or directory: '/Developer/NVIDIA/CUDA-6.5/bin' Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /public/home/test123/chenjh/software/petsc-3.14.6/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/local/cuda/bin gives errors: [Errno 2] No such file or directory: '/usr/local/cuda/bin' Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:775) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:775) Locate a functional CUDA preprocessor ================================================================================ TEST checkHIPCompiler from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:809) TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:809) Locate a functional HIP compiler Checking for program /public/software/compiler/gcc/7.3.1/bin/hipcc...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/hipcc...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/hipcc...not found Checking for program /public/software/compiler/intel/2021.3.0/bin/intel64/hipcc...not found Checking for program /public/software/compiler/intel/2021.3.0/mkl/bin/intel64/hipcc...not found Checking for program /usr/lib64/qt-3.3/bin/hipcc...not found Checking for program /opt/gridview/pmix/bin/hipcc...not found Checking for program /opt/gridview/pmix/sbin/hipcc...not found Checking for program /public/home/test123/perl5/bin/hipcc...not found Checking for program /public/software/apps/module/bin/hipcc...not found Checking for program /opt/gridview/slurm/bin/hipcc...not found Checking for program /opt/gridview/slurm/sbin/hipcc...not found Checking for program /opt/gridview/munge/bin/hipcc...not found Checking for program /opt/gridview/munge/sbin/hipcc...not found Checking for program /opt/gridview/clusquota//bin/hipcc...not found Checking for program /opt/gridview/clusquota//sbin/hipcc...not found Checking for program /opt/gridview/clusconf/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /usr/local/sbin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /public/home/test123/.local/bin/hipcc...not found Checking for program /public/home/test123/bin/hipcc...not found Checking for program /public/home/test123/chenjh/software/petsc-3.14.6/lib/petsc/bin/win32fe/hipcc...not found Unable to find programs ['hipcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['c++', 'gcc-nm', 'x86_64-pc-linux-gnu-gcc-ar', 'gfortran', 'x86_64-pc-linux-gnu-gcc-nm', 'x86_64-pc-linux-gnu-c++', 'gcov-tool', 'x86_64-pc-linux-gnu-gcc', 'gcov-dump', 'x86_64-pc-linux-gnu-gcc-ranlib', 'gcc-ranlib', 'cpp', 'x86_64-pc-linux-gnu-gfortran', 'gcc', 'gcov', 'x86_64-pc-linux-gnu-gcc-7', 'gcc-ar', 'x86_64-pc-linux-gnu-g++', 'g++'] ['fi_pingpong', 'fi_info'] ['mpif90', 'mpicc', 'IMB-NBC', 'mpiicpc', 'impi_info', 'mpigxx', 'hydra_pmi_proxy', 'IMB-MPI1', 'mpicxx', 'tune', 'mpiexec.hydra', 'mpiexec', 'mpitune_fast', 'cpuinfo', 'mpiicc', 'hydra_bstrap_proxy', 'tune_fast', 'hydra_nameserver', 'mpifc', 'IMB-MPI1-GPU', 'IMB-P2P', 'mpirun', 'mpitune', 'mpif77', 'IMB-RMA', 'mpiifort', 'mpigcc', 'IMB-MT'] ['xild.cfg', 'proforder', 'icc.cfg', 'map_opts', 'fortcom', 'mcpcom', 'icc', 'ifort.cfg', 'fpp', 'tselect', 'icpc', 'libcilkrts.so.5', 'xild', 'xiar', 'xiar.cfg', 'profmerge', 'profmergesampling', 'profdcg', 'codecov', 'ifort', 'icpc.cfg'] ['mkl_link_tool'] [] ['pps', 'pmix_info', 'plookup', 'pevent'] Warning accessing /opt/gridview/pmix/sbin gives errors: [Errno 2] No such file or directory: '/opt/gridview/pmix/sbin' Warning accessing /public/home/test123/perl5/bin gives errors: [Errno 2] No such file or directory: '/public/home/test123/perl5/bin' ['modulecmd', 'add.modules', 'mkroot', 'envml'] ['sbatch', 'sinfo', 'sattach', 'strigger', 'sdiag', 'sprio', 'pestat', 'salloc', 'smap', 'sreport', 'sstat', 'sacctmgr', 'scontrol', 'squeue', 'srun', 'sshare', 'scancel', 'sbcast', 'sacct'] ['slurmstepd', 'slurmd', 'slurmctld', 'slurmdbd'] ['unmunge', 'remunge', 'munge'] ['munged'] ['gdeposit', 'grmalloc', 'glsmachine', 'grmjob', 'gcharge', 'greserve', 'gbalance', 'gusage', 'gchuser', 'grmmachine', 'gchjob', 'glstxn', 'gmkuser', 'gtransfer', 'gmkproject', 'grmuser', 'gchaccount', 'mybalance', 'glsalloc', 'gchmachine', 'goldsh', 'gquote', 'glsjob', 'grmquote', 'glsproject', 'gchres', 'gmkmachine', 'gchpasswd', 'gstatement', 'gchproject', 'grmproject', 'gchalloc', 'glsres', 'gchquote', 'gmkjob', 'gmkaccount', 'grmaccount', 'grmres', 'grefund', 'glsaccount', 'gwithdraw', 'glsuser', 'glsquote'] ['goldd', 'sqlite'] ['rpdcp', 'pdsh', 'clusconf-uninstall', 'sshpass', 'clusbak', 'clusconf', 'dshbak', 'pdcp'] [] ['gcov', 'base64', 'audit2allow', 'findsmb', 'sum', 'gvfs-rm', 'nl-route-add', 'red', 'ps2epsi', 'nepomuk-rcgen', 'ncursesw5-config', 'db_upgrade', 'upower', 'iecset', 'imsettings-switch', 'pmieconf', 'h5repart', 'onto2vocabularyclass', 'pkill', 'sg_decode_sense', 'lsusb.py', 'ciptool', 'ypwhich', 'ps2pdf13', 'pomdump', 'journalctl', 'dbus-update-activation-environment', 'setpriv', 'compile_et', 'abrt-action-analyze-python', 'akregatorstorageexporter', 'firewall-config', 'lpr.cups', 'zcat', 'ping', 'rnano', 'mcookie', 'umount', 'git-shell', 'scrollkeeper-uninstall', 'mlxfwstress', 'mkhybrid', 'charmap', 'cifsdd', 'dltest', 'pg_dumpall', 'fusermount', 'nl-neightbl-list', 'akonadi_agent_launcher', 'mapscrn', 'bashbug-64', 'qdoc', 'analog', 'dbpmda', 'python2.7-config', 'qtplugininfo-qt5', 'sudoreplay', 'kill', 'sg_safte', 'mlxtrace_ext', 'dumpiso', 'dump2slvl.pl', 'db47_deadlock', 'abrt-action-save-kernel-data', 'gmt', 'ucx_perftest', 'xsetwacom', 'xzmore', 'sg_verify', 'systemd-hwdb', 'coverage2', 'xdg-desktop-icon', 'evolution', 'genisoimage', 'ktimetracker', 'gnome-tweaks', 'mlnx_conf_mgr.sh', 'cgcreate', 'pscp', 'msguniq', 'hangul', 'xsetroot', '8211view', 'ypcat', 'pmdate', 'isogmt', 'mountpoint', 'more', 'btt', 'mkmanifest', 'alsatplg', 'fc-match', 'lsusb', 'meinproc4_simple', 'snice', 'gdal_grid', 'touch', 'dbus-binding-tool', 'anaconda-cleanup', 'mac2unix', 'spent', 'mv', 'gucharmap', 'vmware-namespace-cmd', 'qdbusviewer-qt5', 'hwloc-ls', 'mcopy', 'tailf', 'panelctl', 'byacc', 'brltty-ttb', 'sftp', 'sane-find-scanner', 'xrefresh', 'bittorrent-console', 'pkla-check-authorization', 'kbackgroundsnapshot', 'slabtop', 'sim_client', 'tcumttest', 'gst-feedback', 'sbcdec', 'sg_get_config', 'piconv', 'teamdctl', 'db_verify', 'sg_ses', 'nfs4_editfacl', 'rdma_client', 'gnatclean', 'pkcheck', 'gdalsrsinfo', 'accountwizard', 'nl-neigh-delete', 'pmprobe', 'kde4-config', 'boltctl', 'cancel', 'bootctl', 'unpack200', 'mstresourcedump', 'pldd', 'akonadi_nepomuktag_resource', 'kmimetypefinder', 'ranlib', 'sg_ident', 'catman', 'ib_atomic_lat', 'pg_receivexlog', 'merge', 'gvfs-mime', 'i2c', 'ksshaskpass', 'dvd+rw-booktype', 'si_mkautoinstallcd', 'locale', 'gdalserver', 'gresource', 'targetclid', 'ksu', 'createdb', 'akonadi_kdeaccounts_resource', 'setserial', 'zforce', 'xzgrep', 'uz', 'ypchsh', 'ptardiff', 'debuginfo-install', 'cdda2ogg', 'dvd-ram-control', 'auvirt', 'pm-is-supported', 'printf', 'purple-remote', 'envsubst', 'gdaladdo', 'xml_merge', 'okular', 'sopranocmd', 'pax', 'groff', 'ffmpeg', 'sessreg', 'telepathy-gabble-xmpp-console', 'on_ac_power', 'eu-ar', 'ssh-keyscan', 'dwp', 'lpstat.cups', 'kstart', 'xzdiff', 'canberra-boot', 'hciattach', 'withsctp', 'sss_ssh_knownhostsproxy', 'pmlc', 'kwin', 'cscope', 'gnome-keyring-3', 'xmlpatternsvalidator-qt5', 'rcsdiff', 'dc', 'sgmlspl', 'cpanp', 'setfacl', 'start-pulseaudio-x11', 'csplit', 'pmap', 'cancel.cups', 'ibus-setup', 'funzip', 'modifyrepo', 'VGAuthService', 'ldns-zsplit', 'mstflint', 'mcd', 'zipdetails', 'chsh', 'id', 'pmjson', 'egrep', 'cpancover', 'kblankscrn.kss', 'stty', 'rmail', 'kde-mv', 'mlxreg', 'aclocal', 'abrt-action-analyze-oops', 'gcc', 'ypmatch', 'pstree', 'hivexget', 'rescan-scsi-bus.sh', 'dbwrap_tool', 'celtenc051', 'gneqn', 'enscript', 'POST', 'ngettext', 'kreadconfig', 'igawk', 'mysqladmin', 'xml-resolver', 'qdbus-qt5', 'svnrdump', 'pango-view', 'gupnp-dlna-info-2.0', 'autoheader', 'fc-cache-64', 'flatpak', 'getopts', 'mget_temp_ext', 'hmac256', 'selfsign-getcert', 'over', 'remote-viewer', 'psed', 'lz', 'rcs', 'bluedevil-monolithic', 'intltool-merge', 'ppdmerge', 'nail', 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'msgexec', 'x0vncserver', 'nl-route-list', 'test_ppa', 'ksvalidator', 'mergerepo', 'gnome-shell-extension-tool', 'lp.cups', 'sg_scan', 'eu-elfcmp', 'nf-exp-delete', 'gpic', 'mysql_fix_extensions', 'dtrace', 'scrollkeeper-get-content-list', 'wqdump', 'systemd-machine-id-setup', 'curl-config', 'pmie2col', 'gsl-randist', 'diff', 'uuclient', 'setfattr', 'ibnetsplit', 'erb', 'python-config', 'psql', 'Xvnc', 'espeak', 'qtdiag', 'smbprint', 'col', 'coredumpctl', 'dehtmldiff', 'xinput', 'rarian-sk-gen-uuid', 'paplay', 'xdg-user-dir', 'sedismod', 'smbclient', 'samba-regedit', 'preparetips', 'sg', 'pinentry-gtk', 'hwloc-info', 'rpcclient', 'kioclient', 'qemu-nbd', 'gst-launch', 'flock', 'gtk-launch', 'foomatic-rip', 'pgrep', 'core_to_hca_dgx.sh', 'kfontinst', 'hwloc-calc', 'unicode_stop', 'pitchplay', 'ksflatten', 'smbtree', 'sbcinfo', 'dimax_init', 'gnome-session-selector', 'pkla-admin-identities', 'pmafm', 'si_psh', 'gnome-session-inhibit', 'xmvn-builddep', 'khotnewstuff4', 'shasum', 'spam', 'x86_64-redhat-linux-gcc', 'dir', 'cp', 'hunspell', 'nautilus', 'ipmish', 'nl-qdisc-list', 'mailq', 'ib_write_bw', 'msgunfmt'] [] ['ipmidetectd', 'lsof', 'lvscan', 'lgroupadd', 'mount.nfs4', 'grub2-install', 'ibhosts', 'sosreport', 'xfs_copy', 'rpc.statd', 'atrun', 'setup_mr_cache.sh', 'automount', 'cupsfilter', 'mkfs.minix', 'xfs_mkfile', 'vgcreate', 'saned', 'grub2-ofpathname', 'mtr', 'si_installbtimage', 'tcpslice', 'cracklib-format', 'biosdevname', 'era_check', 'swaplabel', 'poweroff', 'pvck', 'rtcwake', 'sldd.sh', 'glusterfs', 'augenrules', 'lvdisplay', 'saslauthd', 'libvirtd', 'pwck', 'NetworkManager', 'chgpasswd', 'si_cpimage', 'postlog', 'set_irq_affinity_bynode.sh', 'cfdisk', 'useradd', 'nameif', 'sysctl', 'genl', 'grub2-reboot', 'update-smart-drivedb', 'sendmail.postfix', 'htcacheclean', 'usernetctl', 'virt-what', 'cache_restore', 'rpc.nfsd', 'smartd', 'thin_trim', 'delpart', 'rdma-ndd', 'ntpd', 'mkfs.vfat', 'lvmsadc', 'ib2ib_setup', 'lockdev', 'ypserv', 'xfs_rtcp', 'userhelper', 'dmstats', 'mount.nfs', 'fcoemon', 'lnewusers', 'iscsiadm', 'semodule', 'sasldblistusers2', 'lgroupmod', 'xfs_metadump', 'reboot', 'dhclient-script', 'lvextend', 'in.tftpd', 'postalias', 'dosfslabel', 'ntsysv', 'adcli', 'grub2-macbless', 'nfsdcltrack', 'ModemManager', 'chkconfig', 'iscsi-iname', 'ibacm', 'mountstats', 'pwhistory_helper', 'ipa-client-install', 'iptables-restore', 'xfsinvutil', 'selinuxconlist', 'setsebool', 'ping6', 'ethtool', 'yppoll', 'blkmapd', 'ip6tables-restore', 'mlnx_bf_configure_ct', 'unix_update', 'lldptool', 'sfdisk', 'sedispatch', 'agetty', 'cma_roce_mode', 'tracepath6', 'newusers', 'lvrename', 'rtkitctl', 'pluginviewer', 'xfs_logprint', 'unsquashfs', 'fcrls', 'si_mvimage', 'resizepart', 'nologin', 'chroot', 'ibsysstat', 'dump-utmp', 'plymouth-set-default-theme', 'rmmod', 'sysctl_perf_tuning', 'e2image', 'sushell', 'xfs_quota', 'zvbid', 'consoletype', 'lsmod', 'setcap', 'cupsaccept', 'iscsiuio', 'dump_fts', 'vgimport', 'rpc.gssd', 'pm-suspend-hybrid', 'dm_dso_reg_tool', 'new-kernel-pkg', 'iconvconfig', 'ntpdate', 'selabel_partial_match', 'common_irq_affinity.sh', 'si_rmimage', 'luseradd', 'ip', 'matchpathcon', 'show_gids', 'mount.fuse', 'netreport', 'umount.udisks2', 'ibswitches', 'grub2-bios-setup', 'rdisc', 'usb_modeswitch', 'badblocks', 'dhcrelay', 'smtp-source', 'si_pushupdate', 'abrt-install-ccpp-hook', 'ipa-rmkeytab', 'abrt-harvest-vmcore', 'bpftool', 'ibroute', 'fcgistarter', 'key.dns_resolver', 'clockdiff', 'hwclock', 'gss-server', 'pvremove', 'vendor_post_uninstall.sh', 'route', 'hypervfcopyd', 'si_monitor_before', 'vgmknodes', 'brctl', 'sminfo', 'postlock', 'xfs_io', 'swapoff', 'nl-cls-list', 'zramctl', 'quot', 'pam_console_apply', 'dump_mfts.sh', 'nl-class-list', 'rpc.ypxfrd', 'pam_timestamp_check', 'pivot_root', 'ypset', 'dcbtool', 'check_lft_balance.pl', 'pppoe-discovery', 'lvmpolld', 'ntptime', 'tickadj', 'pvmove', 'ledctl', 'fsfreeze', 'firstboot', 'cache_writeback', 'cgclear', 'umount.nfs', 'genhostid', 'cache_check', 'ifcfg', 'liveinst', 'btrfs-map-logical', 'rtstat', 'rpcinfo', 'btrfs-find-root', 'vgrename', 'ipa-getkeytab', 'mdadm', 'selinuxdefcon', 'ifstat', 'set_irq_affinity_cpulist.sh', 'setroubleshootd', 'reject', 'cryptsetup', 'latencytop-tui', 'ledmon', 'pwunconv', 'ebtables', 'btrfstune', 'powertop', 'dhcpd', 'visudo', 'postconf', 'perfquery', 'ebtables-save', 'tc', 'lvmconfig', 'cups-browsed', 'alternatives', 'pvscan', 'thin_check', 'partprobe', 'si_mkdhcpserver', 'firewalld', 'request-key', 'ntpq', 'iprconfig', 'vmcore-dmesg', 'cache_dump', 'cbq', 'e2freefrag', 'ipsec', 'yumdb', 'usbmuxd', 'setregdomain', 'rtacct', 'plipconfig', 'accton', 'regdbdump', 'btrfs-debug-tree', 'modprobe', 'iptables-save', 'fstrim', 'abrt-auto-reporting', 'setpci', 'mlnx-sf', 'fsck.cramfs', 'dmeventd', 'ibfindnodesusing.pl', 'btrfs', 'si_mkclientnetboot', 'pm-hibernate', 'selabel_digest', 'ldattach', 'iw', 'fcnsq', 'build-locale-archive', 'findfs', 'partx', 'btrfs-image', 'ebtables-restore', 'lgroupdel', 'luserdel', 'semanage', 'wpa_supplicant', 'abrt-harvest-pstoreoops', 'thin_repair', 'latencytop', 'fdformat', 'cache_repair', 'cifs.upcall', 'tuned', 'blkdiscard', 'exportfs', 'wipefs', 'grub2-setpassword', 'capsh', 'raid-check', 'suexec', 'restorecon', 'nl-cls-delete', 'xfs_repair', 'postqueue', 'si_getimage_before', 'tracepath', 'postcat', 'cracklib-unpacker', 'postfix', 'pvresize', 'sss_cache', 'fxload', 'arpd', 'fsck.fat', 'atd', 'fdisk', 'glibc_post_upgrade.x86_64', 'vdptool', 'setup', 'fcoeadm', 'mkfs.ext3', 'cacertdir_rehash', 'vgscan', 'tcpdmatch', 'mlnx_tune', 'ifenslave', 'si_netbootmond', 'vpddecode', 'chpasswd', 'ip6tables-save', 'ipa-client-automount', 'e4defrag', 'avcstat', 'cifs.idmap', 'slattach', 'authconfig-tui', 'show_irq_affinity.sh', 'crda', 'ibccquery', 'ipmaddr', 'yptest', 'gdm', 'mkdict', 'cupsd', 'mkfs.fat', 'sendmail', 'cupsenable', 'saquery', 'ldconfig', 'losetup', 'routef', 'getpcaps', 'virtlogd', 'thin_metadata_size', 'vgcfgrestore', 'fixparts', 'radvd', 'pdata_tools', 'ibccconfig', 'lid', 'mpathpersist', 'ibdev2netdev', 'setenforce', 'quotaon', 'sgdisk', 'sktest', 'vgck', 'selinuxenabled', 'yum-complete-transaction', 'try-from', 'xfs_growfs', 'fuser', 'e2undo', 'si_pushinstall', 'rtpr', 'rotatelogs', 'grpconv', 'si_mkbootserver', 'nl-qdisc-delete', 'fatlabel', 'odp_stat.sh', 'ifup', 'install-info', 'iprinit', 'alsactl', 'selabel_lookup_best_match', 'tcpdump', 'si_mkautoinstallscript', 'lvconvert', 'lnstat', 'pam_tally2', 'oddjobd', 'mkfs.btrfs', 'si_monitortk', 'rpc.rquotad', 'dosfsck', 'dtorrent', 'clock', 'lvreduce', 'udevadm', 'xfsdump', 'efibootmgr', 'lvcreate', 'ifdown', 'iconvconfig.x86_64', 'vgsplit', 'ipmievd', 'rpcbind', 'testsaslauthd', 'setquota', 'insmod', 'modinfo', 'mke2fs', 'abrt-dbus', 'nl-classid-lookup', 'rpcdebug', 'pppstats', 'plymouthd', 'gssproxy', 'osd_login', 'bfb-install', 'selinuxexeccon', 'cupsaddsmb', 'mksquashfs', 'quotaoff', 'ibportstate', 'glusterfsd', 'btrfsck', 'si_addclients', 'chat', 'grub2-rpm-sort', 'sys-unconfig', 'zic', 'setfiles', 'lpinfo', 'iprupdate', 'nfsiostat', 'xtables-multi', 'logsave', 'hardlink', 'vgmerge', 'mlnx_affinity', 'nl-pktloc-lookup', 'pppd', 'ip6tables', 'pwconv', 'set_irq_affinity.sh', 'anaconda', 'unix_chkpwd', 'ss', 'ausearch', 'lchage', 'xfs_fsr', 'switch_root', 'smartctl', 'ibnetdiscover', 'postmulti', 'ibtracert', 'smparquery', 'mkhomedir_helper', 'ctstat', 'mkfs.ext4', 'ibsrpdm', 'sshd-keygen', 'update-alternatives', 'hwloc-dump-hwdata', 'xfs_freeze', 'pvs', 'vgs', 'bridge', 'si_mkdhcpstatic', 'thin_ls', 'si_getimage', 'weak-modules', 'ibclearcounters', 'cma_roce_tos', 'adduser', 'si_installbtimage_before', 'crond', 'xfs_admin', 'eapol_test', 'gluster', 'skdump', 'selinux_restorecon', 'init', 'era_dump', 'xfs_db', 'rpc.mountd', 'nfsstat', 'grub2-set-default', 'mkfs.xfs', 'runlevel', 'abrt-configuration', 'service', 'makedumpfile', 'rsyslogd', 'iprdbg', 'mkdosfs', 'getsebool', 'certmonger', 'chcpu', 'arp', 'usb_modeswitch_dispatcher', 'dmsetup', 'ibqueryerrors', 'lpadmin', 'show_counters', 'start-statd', 'iblinkinfo', 'grub2-probe', 'smtp-sink', 'rngd', 'kpatch', 'vendstat', 'accept', 'btrfs-zero-log', 'groupmems', 'umount.nfs4', 'logrotate', 'showmount', 'create-cracklib-dict', 'pm-utils-bugreport-info.sh', 'mkdumprd', 'hypervvssd', 'vgchange', 'iptables', 'fsck.minix', 'fsck.ext3', 'lpmove', 'sulogin', 'lshw', 'aureport', 'ibstatus', 'ifconfig', 'httpd', 'postmap', 'dhclient', 'vgcfgbackup', 'cgrulesengd', 'apachectl', 'sssd', 'shutdown', 'fsck.vfat', 'vgreduce', 'tuned-adm', 'ibstat', 'pvdisplay', 'resize2fs', 'genl-ctrl-list', 'grub2-mkconfig', 'thin_delta', 'cupsdisable', 'ypbind', 'packer', 'auditd', 'killall5', 'grpunconv', 'fixfiles', 'grubby', 'postkick', 'cups-genppd.5.2', 'devlink', 'fipvlan', 'lvchange', 'vgextend', 'lvresize', 'groupmod', 'pm-powersave', 'parted', 'lvmsar', 'debugfs', 'sestatus', 'installkernel', 'lpc.cups', 'btrfs-convert', 'nl-class-delete', 'hypervkvpd', 'safe_finger', 'dmfilemapd', 'alsabat-test.sh', 'redhat_lsb_trigger.x86_64', 'cgdcbxd', 'swapon', 'lpasswd', 'run_srp_daemon', 'update-pciids', 'si_mkbootpackage', 'nl-cls-add', 'ksmtuned', 'xfs_bmap', 'xfsrestore', 'tune2fs', 'iscsid', 'mii-diag', 'nl-qdisc-add', 'nl-class-add', 'edquota', 'depmod', 'vendor_pre_uninstall.sh', 'applygnupgdefaults', 'alsa-info', 'addpart', 'era_restore', 'ipset', 'smpdump', 'rdma', 'mkfs.msdos', 'e2fsck', 'pm-suspend', 'vgremove', 'tcsd', 'nstat', 'audispd', 'era_invalidate', 'filefrag', 'vgdisplay', 'vgconvert', 'mount.glusterfs', 'accessdb', 'groupadd', 'multipath', 'getcap', 'kexec', 'mount.cifs', 'iptunnel', 'quotacheck', 'netscsid', 'zdump', 'mkfs.cramfs', 'iotop', 'mlnx_bf_configure', 'xfs_mdrestore', 'smpquery', 'fsck.ext4', 'mkfs.ext2', 'dmidecode', 'sefcontext_compile', 'gdisk', 'thin_dump', 'selabel_lookup', 'wpa_cli', 'sa', 'si_monitor', 'alsa-info.sh', 'dnsmasq', 'btrfs-select-super', 'genhomedircon', 'dump_lfts.sh', 'cgdisk', 'paperconfig', 'lvm', 'abrtd', 'routel', 'xfs_info', 'fsck.btrfs', 'pethtool', 'ownership', 'lvmdump', 'ppp-watch', 'biosdecode', 'lpc', 'grub2-get-kernel-settings', 'nl-link-list', 'ibclearerrors', 'pppdump', 'ofed_uninstall.sh', 'rpc.yppasswdd', 'unbound-anchor', 'pvchange', 'halt', 'si_mkrsyncd_conf', 'ibcacheedit', 'intel-microcode2ucode', 'sshd', 'grub2-sparc64-setup', 'mii-tool', 'rtmon', 'ibrouters', 'sysinfo-snapshot.py', 'cracklib-check', 'mpathconf', 'faillock', 'compat_gid_gen', 'sim_server', 'groupdel', 'telinit', 'mkfs', 'avahi-daemon', 'virtlockd', 'xfs_estimate', 'yppush', 'blkdeactivate', 'lvremove', 'iprsos', 'lldpad', 'ipa-certupdate', 'show_irq_affinity_hints.sh', 'tcpd', 'fsck.ext2', 'fsck', 'uuserver', 'multipathd', 'usermod', 'ibping', 'osmtest', 'iscsistart', 'pidof', 'addgnupghome', 'saslpasswd2', 'convertquota', 'sgpio', 'blkid', 'dmevent_tool', 'dracut', 'grpck', 'dumpe2fs', 'dmraid', 'lspci', 'xqmstats', 'rshim', 'mklost+found', 'ether-wake', 'lvmconf', 'sm-notify', 'spice-vdagentd', 'radvdump', 'kpartx', 'extlinux', 'cgconfigparser', 'e2label', 'vipw', 'postsuper', 'arping', 'ctrlaltdel', 'xfs_ncheck', 'pvcreate', 'handle-sshpw', 'sln', 'cupsreject', 'autrace', 'anacron', 'chronyd', 'authconfig', 'abrt-server', 'pifconfig', 'auditctl', 'vgimportclone', 'thin_restore', 'lvmetad', 'ibidsverify.pl', 'dmraid.static', 'opensm', 'iprdump', 'fsck.msdos', 'postdrop', 'cupsctl', 'cups-genppdupdate', 'fsadm', 'realm', 'mdmon', 'ntpdc', 'fcping', 'getenforce', 'readprofile', 'lvmdiskscan', 'userdel', 'vigr', 'rpc.idmapd', 'lusermod', 'thin_rmap', 'ibaddr', 'nfsidmap', 'quotastats', 'rfkill', 'cache_metadata_size', 'cracklib-packer', 'srp_daemon', 'lvs', 'repquota', 'irqbalance', 'blockdev', 'runuser', 'ibnodes', 'ipa-join', 'fsck.xfs', 'vgexport', 'ntp-keygen', 'nl-qdisc-list', 'mkswap', 'load_policy', 'dump-acct', 'wpa_passphrase'] Warning accessing /public/home/test123/.local/bin gives errors: [Errno 2] No such file or directory: '/public/home/test123/.local/bin' Warning accessing /public/home/test123/bin gives errors: [Errno 2] No such file or directory: '/public/home/test123/bin' Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] Checking for program /public/software/compiler/gcc/7.3.1/bin/opt/rocm/bin/hipcc...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/opt/rocm/bin/hipcc...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/opt/rocm/bin/hipcc...not found Checking for program /public/software/compiler/intel/2021.3.0/bin/intel64/opt/rocm/bin/hipcc...not found Checking for program /public/software/compiler/intel/2021.3.0/mkl/bin/intel64/opt/rocm/bin/hipcc...not found Checking for program /usr/lib64/qt-3.3/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/gridview/pmix/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/gridview/pmix/sbin/opt/rocm/bin/hipcc...not found Checking for program /public/home/test123/perl5/bin/opt/rocm/bin/hipcc...not found Checking for program /public/software/apps/module/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/gridview/slurm/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/gridview/slurm/sbin/opt/rocm/bin/hipcc...not found Checking for program /opt/gridview/munge/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/gridview/munge/sbin/opt/rocm/bin/hipcc...not found Checking for program /opt/gridview/clusquota//bin/opt/rocm/bin/hipcc...not found Checking for program /opt/gridview/clusquota//sbin/opt/rocm/bin/hipcc...not found Checking for program /opt/gridview/clusconf/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /public/home/test123/.local/bin/opt/rocm/bin/hipcc...not found Checking for program /public/home/test123/bin/opt/rocm/bin/hipcc...not found Checking for program /public/home/test123/chenjh/software/petsc-3.14.6/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found Unable to find programs ['opt/rocm/bin/hipcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['c++', 'gcc-nm', 'x86_64-pc-linux-gnu-gcc-ar', 'gfortran', 'x86_64-pc-linux-gnu-gcc-nm', 'x86_64-pc-linux-gnu-c++', 'gcov-tool', 'x86_64-pc-linux-gnu-gcc', 'gcov-dump', 'x86_64-pc-linux-gnu-gcc-ranlib', 'gcc-ranlib', 'cpp', 'x86_64-pc-linux-gnu-gfortran', 'gcc', 'gcov', 'x86_64-pc-linux-gnu-gcc-7', 'gcc-ar', 'x86_64-pc-linux-gnu-g++', 'g++'] ['fi_pingpong', 'fi_info'] ['mpif90', 'mpicc', 'IMB-NBC', 'mpiicpc', 'impi_info', 'mpigxx', 'hydra_pmi_proxy', 'IMB-MPI1', 'mpicxx', 'tune', 'mpiexec.hydra', 'mpiexec', 'mpitune_fast', 'cpuinfo', 'mpiicc', 'hydra_bstrap_proxy', 'tune_fast', 'hydra_nameserver', 'mpifc', 'IMB-MPI1-GPU', 'IMB-P2P', 'mpirun', 'mpitune', 'mpif77', 'IMB-RMA', 'mpiifort', 'mpigcc', 'IMB-MT'] ['xild.cfg', 'proforder', 'icc.cfg', 'map_opts', 'fortcom', 'mcpcom', 'icc', 'ifort.cfg', 'fpp', 'tselect', 'icpc', 'libcilkrts.so.5', 'xild', 'xiar', 'xiar.cfg', 'profmerge', 'profmergesampling', 'profdcg', 'codecov', 'ifort', 'icpc.cfg'] ['mkl_link_tool'] [] ['pps', 'pmix_info', 'plookup', 'pevent'] Warning accessing /opt/gridview/pmix/sbin gives errors: [Errno 2] No such file or directory: '/opt/gridview/pmix/sbin' Warning accessing /public/home/test123/perl5/bin gives errors: [Errno 2] No such file or directory: '/public/home/test123/perl5/bin' ['modulecmd', 'add.modules', 'mkroot', 'envml'] ['sbatch', 'sinfo', 'sattach', 'strigger', 'sdiag', 'sprio', 'pestat', 'salloc', 'smap', 'sreport', 'sstat', 'sacctmgr', 'scontrol', 'squeue', 'srun', 'sshare', 'scancel', 'sbcast', 'sacct'] ['slurmstepd', 'slurmd', 'slurmctld', 'slurmdbd'] ['unmunge', 'remunge', 'munge'] ['munged'] ['gdeposit', 'grmalloc', 'glsmachine', 'grmjob', 'gcharge', 'greserve', 'gbalance', 'gusage', 'gchuser', 'grmmachine', 'gchjob', 'glstxn', 'gmkuser', 'gtransfer', 'gmkproject', 'grmuser', 'gchaccount', 'mybalance', 'glsalloc', 'gchmachine', 'goldsh', 'gquote', 'glsjob', 'grmquote', 'glsproject', 'gchres', 'gmkmachine', 'gchpasswd', 'gstatement', 'gchproject', 'grmproject', 'gchalloc', 'glsres', 'gchquote', 'gmkjob', 'gmkaccount', 'grmaccount', 'grmres', 'grefund', 'glsaccount', 'gwithdraw', 'glsuser', 'glsquote'] ['goldd', 'sqlite'] ['rpdcp', 'pdsh', 'clusconf-uninstall', 'sshpass', 'clusbak', 'clusconf', 'dshbak', 'pdcp'] [] ['gcov', 'base64', 'audit2allow', 'findsmb', 'sum', 'gvfs-rm', 'nl-route-add', 'red', 'ps2epsi', 'nepomuk-rcgen', 'ncursesw5-config', 'db_upgrade', 'upower', 'iecset', 'imsettings-switch', 'pmieconf', 'h5repart', 'onto2vocabularyclass', 'pkill', 'sg_decode_sense', 'lsusb.py', 'ciptool', 'ypwhich', 'ps2pdf13', 'pomdump', 'journalctl', 'dbus-update-activation-environment', 'setpriv', 'compile_et', 'abrt-action-analyze-python', 'akregatorstorageexporter', 'firewall-config', 'lpr.cups', 'zcat', 'ping', 'rnano', 'mcookie', 'umount', 'git-shell', 'scrollkeeper-uninstall', 'mlxfwstress', 'mkhybrid', 'charmap', 'cifsdd', 'dltest', 'pg_dumpall', 'fusermount', 'nl-neightbl-list', 'akonadi_agent_launcher', 'mapscrn', 'bashbug-64', 'qdoc', 'analog', 'dbpmda', 'python2.7-config', 'qtplugininfo-qt5', 'sudoreplay', 'kill', 'sg_safte', 'mlxtrace_ext', 'dumpiso', 'dump2slvl.pl', 'db47_deadlock', 'abrt-action-save-kernel-data', 'gmt', 'ucx_perftest', 'xsetwacom', 'xzmore', 'sg_verify', 'systemd-hwdb', 'coverage2', 'xdg-desktop-icon', 'evolution', 'genisoimage', 'ktimetracker', 'gnome-tweaks', 'mlnx_conf_mgr.sh', 'cgcreate', 'pscp', 'msguniq', 'hangul', 'xsetroot', '8211view', 'ypcat', 'pmdate', 'isogmt', 'mountpoint', 'more', 'btt', 'mkmanifest', 'alsatplg', 'fc-match', 'lsusb', 'meinproc4_simple', 'snice', 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'htpasswd', 'pstruct', 'usbhid-dump', 'systemd-ask-password', 'pmevent', 'stapbpf', 'git', 'netaddr', 'influx_inspect', 'pwhich', 'cpan', 'kdeinit4_wrapper', 'atrm', 'xdg-settings', 'grub2-render-label', 'akonadi_maildispatcher_agent', 'tkjpeg', 'ldns-read-zone', 's2p', 'sdpscanner', 'gdal_rasterize', 'h5ls', 'ibv_srq_pingpong', 'oggenc', 'pmtrace', 'msgexec', 'x0vncserver', 'nl-route-list', 'test_ppa', 'ksvalidator', 'mergerepo', 'gnome-shell-extension-tool', 'lp.cups', 'sg_scan', 'eu-elfcmp', 'nf-exp-delete', 'gpic', 'mysql_fix_extensions', 'dtrace', 'scrollkeeper-get-content-list', 'wqdump', 'systemd-machine-id-setup', 'curl-config', 'pmie2col', 'gsl-randist', 'diff', 'uuclient', 'setfattr', 'ibnetsplit', 'erb', 'python-config', 'psql', 'Xvnc', 'espeak', 'qtdiag', 'smbprint', 'col', 'coredumpctl', 'dehtmldiff', 'xinput', 'rarian-sk-gen-uuid', 'paplay', 'xdg-user-dir', 'sedismod', 'smbclient', 'samba-regedit', 'preparetips', 'sg', 'pinentry-gtk', 'hwloc-info', 'rpcclient', 'kioclient', 'qemu-nbd', 'gst-launch', 'flock', 'gtk-launch', 'foomatic-rip', 'pgrep', 'core_to_hca_dgx.sh', 'kfontinst', 'hwloc-calc', 'unicode_stop', 'pitchplay', 'ksflatten', 'smbtree', 'sbcinfo', 'dimax_init', 'gnome-session-selector', 'pkla-admin-identities', 'pmafm', 'si_psh', 'gnome-session-inhibit', 'xmvn-builddep', 'khotnewstuff4', 'shasum', 'spam', 'x86_64-redhat-linux-gcc', 'dir', 'cp', 'hunspell', 'nautilus', 'ipmish', 'nl-qdisc-list', 'mailq', 'ib_write_bw', 'msgunfmt'] [] ['ipmidetectd', 'lsof', 'lvscan', 'lgroupadd', 'mount.nfs4', 'grub2-install', 'ibhosts', 'sosreport', 'xfs_copy', 'rpc.statd', 'atrun', 'setup_mr_cache.sh', 'automount', 'cupsfilter', 'mkfs.minix', 'xfs_mkfile', 'vgcreate', 'saned', 'grub2-ofpathname', 'mtr', 'si_installbtimage', 'tcpslice', 'cracklib-format', 'biosdevname', 'era_check', 'swaplabel', 'poweroff', 'pvck', 'rtcwake', 'sldd.sh', 'glusterfs', 'augenrules', 'lvdisplay', 'saslauthd', 'libvirtd', 'pwck', 'NetworkManager', 'chgpasswd', 'si_cpimage', 'postlog', 'set_irq_affinity_bynode.sh', 'cfdisk', 'useradd', 'nameif', 'sysctl', 'genl', 'grub2-reboot', 'update-smart-drivedb', 'sendmail.postfix', 'htcacheclean', 'usernetctl', 'virt-what', 'cache_restore', 'rpc.nfsd', 'smartd', 'thin_trim', 'delpart', 'rdma-ndd', 'ntpd', 'mkfs.vfat', 'lvmsadc', 'ib2ib_setup', 'lockdev', 'ypserv', 'xfs_rtcp', 'userhelper', 'dmstats', 'mount.nfs', 'fcoemon', 'lnewusers', 'iscsiadm', 'semodule', 'sasldblistusers2', 'lgroupmod', 'xfs_metadump', 'reboot', 'dhclient-script', 'lvextend', 'in.tftpd', 'postalias', 'dosfslabel', 'ntsysv', 'adcli', 'grub2-macbless', 'nfsdcltrack', 'ModemManager', 'chkconfig', 'iscsi-iname', 'ibacm', 'mountstats', 'pwhistory_helper', 'ipa-client-install', 'iptables-restore', 'xfsinvutil', 'selinuxconlist', 'setsebool', 'ping6', 'ethtool', 'yppoll', 'blkmapd', 'ip6tables-restore', 'mlnx_bf_configure_ct', 'unix_update', 'lldptool', 'sfdisk', 'sedispatch', 'agetty', 'cma_roce_mode', 'tracepath6', 'newusers', 'lvrename', 'rtkitctl', 'pluginviewer', 'xfs_logprint', 'unsquashfs', 'fcrls', 'si_mvimage', 'resizepart', 'nologin', 'chroot', 'ibsysstat', 'dump-utmp', 'plymouth-set-default-theme', 'rmmod', 'sysctl_perf_tuning', 'e2image', 'sushell', 'xfs_quota', 'zvbid', 'consoletype', 'lsmod', 'setcap', 'cupsaccept', 'iscsiuio', 'dump_fts', 'vgimport', 'rpc.gssd', 'pm-suspend-hybrid', 'dm_dso_reg_tool', 'new-kernel-pkg', 'iconvconfig', 'ntpdate', 'selabel_partial_match', 'common_irq_affinity.sh', 'si_rmimage', 'luseradd', 'ip', 'matchpathcon', 'show_gids', 'mount.fuse', 'netreport', 'umount.udisks2', 'ibswitches', 'grub2-bios-setup', 'rdisc', 'usb_modeswitch', 'badblocks', 'dhcrelay', 'smtp-source', 'si_pushupdate', 'abrt-install-ccpp-hook', 'ipa-rmkeytab', 'abrt-harvest-vmcore', 'bpftool', 'ibroute', 'fcgistarter', 'key.dns_resolver', 'clockdiff', 'hwclock', 'gss-server', 'pvremove', 'vendor_post_uninstall.sh', 'route', 'hypervfcopyd', 'si_monitor_before', 'vgmknodes', 'brctl', 'sminfo', 'postlock', 'xfs_io', 'swapoff', 'nl-cls-list', 'zramctl', 'quot', 'pam_console_apply', 'dump_mfts.sh', 'nl-class-list', 'rpc.ypxfrd', 'pam_timestamp_check', 'pivot_root', 'ypset', 'dcbtool', 'check_lft_balance.pl', 'pppoe-discovery', 'lvmpolld', 'ntptime', 'tickadj', 'pvmove', 'ledctl', 'fsfreeze', 'firstboot', 'cache_writeback', 'cgclear', 'umount.nfs', 'genhostid', 'cache_check', 'ifcfg', 'liveinst', 'btrfs-map-logical', 'rtstat', 'rpcinfo', 'btrfs-find-root', 'vgrename', 'ipa-getkeytab', 'mdadm', 'selinuxdefcon', 'ifstat', 'set_irq_affinity_cpulist.sh', 'setroubleshootd', 'reject', 'cryptsetup', 'latencytop-tui', 'ledmon', 'pwunconv', 'ebtables', 'btrfstune', 'powertop', 'dhcpd', 'visudo', 'postconf', 'perfquery', 'ebtables-save', 'tc', 'lvmconfig', 'cups-browsed', 'alternatives', 'pvscan', 'thin_check', 'partprobe', 'si_mkdhcpserver', 'firewalld', 'request-key', 'ntpq', 'iprconfig', 'vmcore-dmesg', 'cache_dump', 'cbq', 'e2freefrag', 'ipsec', 'yumdb', 'usbmuxd', 'setregdomain', 'rtacct', 'plipconfig', 'accton', 'regdbdump', 'btrfs-debug-tree', 'modprobe', 'iptables-save', 'fstrim', 'abrt-auto-reporting', 'setpci', 'mlnx-sf', 'fsck.cramfs', 'dmeventd', 'ibfindnodesusing.pl', 'btrfs', 'si_mkclientnetboot', 'pm-hibernate', 'selabel_digest', 'ldattach', 'iw', 'fcnsq', 'build-locale-archive', 'findfs', 'partx', 'btrfs-image', 'ebtables-restore', 'lgroupdel', 'luserdel', 'semanage', 'wpa_supplicant', 'abrt-harvest-pstoreoops', 'thin_repair', 'latencytop', 'fdformat', 'cache_repair', 'cifs.upcall', 'tuned', 'blkdiscard', 'exportfs', 'wipefs', 'grub2-setpassword', 'capsh', 'raid-check', 'suexec', 'restorecon', 'nl-cls-delete', 'xfs_repair', 'postqueue', 'si_getimage_before', 'tracepath', 'postcat', 'cracklib-unpacker', 'postfix', 'pvresize', 'sss_cache', 'fxload', 'arpd', 'fsck.fat', 'atd', 'fdisk', 'glibc_post_upgrade.x86_64', 'vdptool', 'setup', 'fcoeadm', 'mkfs.ext3', 'cacertdir_rehash', 'vgscan', 'tcpdmatch', 'mlnx_tune', 'ifenslave', 'si_netbootmond', 'vpddecode', 'chpasswd', 'ip6tables-save', 'ipa-client-automount', 'e4defrag', 'avcstat', 'cifs.idmap', 'slattach', 'authconfig-tui', 'show_irq_affinity.sh', 'crda', 'ibccquery', 'ipmaddr', 'yptest', 'gdm', 'mkdict', 'cupsd', 'mkfs.fat', 'sendmail', 'cupsenable', 'saquery', 'ldconfig', 'losetup', 'routef', 'getpcaps', 'virtlogd', 'thin_metadata_size', 'vgcfgrestore', 'fixparts', 'radvd', 'pdata_tools', 'ibccconfig', 'lid', 'mpathpersist', 'ibdev2netdev', 'setenforce', 'quotaon', 'sgdisk', 'sktest', 'vgck', 'selinuxenabled', 'yum-complete-transaction', 'try-from', 'xfs_growfs', 'fuser', 'e2undo', 'si_pushinstall', 'rtpr', 'rotatelogs', 'grpconv', 'si_mkbootserver', 'nl-qdisc-delete', 'fatlabel', 'odp_stat.sh', 'ifup', 'install-info', 'iprinit', 'alsactl', 'selabel_lookup_best_match', 'tcpdump', 'si_mkautoinstallscript', 'lvconvert', 'lnstat', 'pam_tally2', 'oddjobd', 'mkfs.btrfs', 'si_monitortk', 'rpc.rquotad', 'dosfsck', 'dtorrent', 'clock', 'lvreduce', 'udevadm', 'xfsdump', 'efibootmgr', 'lvcreate', 'ifdown', 'iconvconfig.x86_64', 'vgsplit', 'ipmievd', 'rpcbind', 'testsaslauthd', 'setquota', 'insmod', 'modinfo', 'mke2fs', 'abrt-dbus', 'nl-classid-lookup', 'rpcdebug', 'pppstats', 'plymouthd', 'gssproxy', 'osd_login', 'bfb-install', 'selinuxexeccon', 'cupsaddsmb', 'mksquashfs', 'quotaoff', 'ibportstate', 'glusterfsd', 'btrfsck', 'si_addclients', 'chat', 'grub2-rpm-sort', 'sys-unconfig', 'zic', 'setfiles', 'lpinfo', 'iprupdate', 'nfsiostat', 'xtables-multi', 'logsave', 'hardlink', 'vgmerge', 'mlnx_affinity', 'nl-pktloc-lookup', 'pppd', 'ip6tables', 'pwconv', 'set_irq_affinity.sh', 'anaconda', 'unix_chkpwd', 'ss', 'ausearch', 'lchage', 'xfs_fsr', 'switch_root', 'smartctl', 'ibnetdiscover', 'postmulti', 'ibtracert', 'smparquery', 'mkhomedir_helper', 'ctstat', 'mkfs.ext4', 'ibsrpdm', 'sshd-keygen', 'update-alternatives', 'hwloc-dump-hwdata', 'xfs_freeze', 'pvs', 'vgs', 'bridge', 'si_mkdhcpstatic', 'thin_ls', 'si_getimage', 'weak-modules', 'ibclearcounters', 'cma_roce_tos', 'adduser', 'si_installbtimage_before', 'crond', 'xfs_admin', 'eapol_test', 'gluster', 'skdump', 'selinux_restorecon', 'init', 'era_dump', 'xfs_db', 'rpc.mountd', 'nfsstat', 'grub2-set-default', 'mkfs.xfs', 'runlevel', 'abrt-configuration', 'service', 'makedumpfile', 'rsyslogd', 'iprdbg', 'mkdosfs', 'getsebool', 'certmonger', 'chcpu', 'arp', 'usb_modeswitch_dispatcher', 'dmsetup', 'ibqueryerrors', 'lpadmin', 'show_counters', 'start-statd', 'iblinkinfo', 'grub2-probe', 'smtp-sink', 'rngd', 'kpatch', 'vendstat', 'accept', 'btrfs-zero-log', 'groupmems', 'umount.nfs4', 'logrotate', 'showmount', 'create-cracklib-dict', 'pm-utils-bugreport-info.sh', 'mkdumprd', 'hypervvssd', 'vgchange', 'iptables', 'fsck.minix', 'fsck.ext3', 'lpmove', 'sulogin', 'lshw', 'aureport', 'ibstatus', 'ifconfig', 'httpd', 'postmap', 'dhclient', 'vgcfgbackup', 'cgrulesengd', 'apachectl', 'sssd', 'shutdown', 'fsck.vfat', 'vgreduce', 'tuned-adm', 'ibstat', 'pvdisplay', 'resize2fs', 'genl-ctrl-list', 'grub2-mkconfig', 'thin_delta', 'cupsdisable', 'ypbind', 'packer', 'auditd', 'killall5', 'grpunconv', 'fixfiles', 'grubby', 'postkick', 'cups-genppd.5.2', 'devlink', 'fipvlan', 'lvchange', 'vgextend', 'lvresize', 'groupmod', 'pm-powersave', 'parted', 'lvmsar', 'debugfs', 'sestatus', 'installkernel', 'lpc.cups', 'btrfs-convert', 'nl-class-delete', 'hypervkvpd', 'safe_finger', 'dmfilemapd', 'alsabat-test.sh', 'redhat_lsb_trigger.x86_64', 'cgdcbxd', 'swapon', 'lpasswd', 'run_srp_daemon', 'update-pciids', 'si_mkbootpackage', 'nl-cls-add', 'ksmtuned', 'xfs_bmap', 'xfsrestore', 'tune2fs', 'iscsid', 'mii-diag', 'nl-qdisc-add', 'nl-class-add', 'edquota', 'depmod', 'vendor_pre_uninstall.sh', 'applygnupgdefaults', 'alsa-info', 'addpart', 'era_restore', 'ipset', 'smpdump', 'rdma', 'mkfs.msdos', 'e2fsck', 'pm-suspend', 'vgremove', 'tcsd', 'nstat', 'audispd', 'era_invalidate', 'filefrag', 'vgdisplay', 'vgconvert', 'mount.glusterfs', 'accessdb', 'groupadd', 'multipath', 'getcap', 'kexec', 'mount.cifs', 'iptunnel', 'quotacheck', 'netscsid', 'zdump', 'mkfs.cramfs', 'iotop', 'mlnx_bf_configure', 'xfs_mdrestore', 'smpquery', 'fsck.ext4', 'mkfs.ext2', 'dmidecode', 'sefcontext_compile', 'gdisk', 'thin_dump', 'selabel_lookup', 'wpa_cli', 'sa', 'si_monitor', 'alsa-info.sh', 'dnsmasq', 'btrfs-select-super', 'genhomedircon', 'dump_lfts.sh', 'cgdisk', 'paperconfig', 'lvm', 'abrtd', 'routel', 'xfs_info', 'fsck.btrfs', 'pethtool', 'ownership', 'lvmdump', 'ppp-watch', 'biosdecode', 'lpc', 'grub2-get-kernel-settings', 'nl-link-list', 'ibclearerrors', 'pppdump', 'ofed_uninstall.sh', 'rpc.yppasswdd', 'unbound-anchor', 'pvchange', 'halt', 'si_mkrsyncd_conf', 'ibcacheedit', 'intel-microcode2ucode', 'sshd', 'grub2-sparc64-setup', 'mii-tool', 'rtmon', 'ibrouters', 'sysinfo-snapshot.py', 'cracklib-check', 'mpathconf', 'faillock', 'compat_gid_gen', 'sim_server', 'groupdel', 'telinit', 'mkfs', 'avahi-daemon', 'virtlockd', 'xfs_estimate', 'yppush', 'blkdeactivate', 'lvremove', 'iprsos', 'lldpad', 'ipa-certupdate', 'show_irq_affinity_hints.sh', 'tcpd', 'fsck.ext2', 'fsck', 'uuserver', 'multipathd', 'usermod', 'ibping', 'osmtest', 'iscsistart', 'pidof', 'addgnupghome', 'saslpasswd2', 'convertquota', 'sgpio', 'blkid', 'dmevent_tool', 'dracut', 'grpck', 'dumpe2fs', 'dmraid', 'lspci', 'xqmstats', 'rshim', 'mklost+found', 'ether-wake', 'lvmconf', 'sm-notify', 'spice-vdagentd', 'radvdump', 'kpartx', 'extlinux', 'cgconfigparser', 'e2label', 'vipw', 'postsuper', 'arping', 'ctrlaltdel', 'xfs_ncheck', 'pvcreate', 'handle-sshpw', 'sln', 'cupsreject', 'autrace', 'anacron', 'chronyd', 'authconfig', 'abrt-server', 'pifconfig', 'auditctl', 'vgimportclone', 'thin_restore', 'lvmetad', 'ibidsverify.pl', 'dmraid.static', 'opensm', 'iprdump', 'fsck.msdos', 'postdrop', 'cupsctl', 'cups-genppdupdate', 'fsadm', 'realm', 'mdmon', 'ntpdc', 'fcping', 'getenforce', 'readprofile', 'lvmdiskscan', 'userdel', 'vigr', 'rpc.idmapd', 'lusermod', 'thin_rmap', 'ibaddr', 'nfsidmap', 'quotastats', 'rfkill', 'cache_metadata_size', 'cracklib-packer', 'srp_daemon', 'lvs', 'repquota', 'irqbalance', 'blockdev', 'runuser', 'ibnodes', 'ipa-join', 'fsck.xfs', 'vgexport', 'ntp-keygen', 'nl-qdisc-list', 'mkswap', 'load_policy', 'dump-acct', 'wpa_passphrase'] Warning accessing /public/home/test123/.local/bin gives errors: [Errno 2] No such file or directory: '/public/home/test123/.local/bin' Warning accessing /public/home/test123/bin gives errors: [Errno 2] No such file or directory: '/public/home/test123/bin' Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] ================================================================================ TEST checkHIPPreprocessor from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:845) TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:845) Placeholder for now ================================================================================ TEST checkSYCLCompiler from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:866) TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:866) Locate a functional SYCL compiler ================================================================================ TEST checkSYCLPreprocessor from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:892) TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:892) Placeholder for now ================================================================================ TEST checkCxxCompiler from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:981) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:981) Locate a functional Cxx compiler Checking for program /public/software/compiler/gcc/7.3.1/bin/mpicxx...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/mpicxx...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/mpicxx...found Defined make macro "CXX" to "mpicxx" Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-sMhvLh/config.setCompilers/conftest /tmp/petsc-sMhvLh/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-sMhvLh/config.setCompilers/conftest /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-sMhvLh/config.setCompilers/conftest /tmp/petsc-sMhvLh/config.setCompilers/conftest.o Testing executable /tmp/petsc-sMhvLh/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-sMhvLh/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-sMhvLh/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: mpicxx --version stdout: g++ (GCC) 7.3.1 20180303 (Red Hat 7.3.1-5) Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:1022) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1022) Locate a functional Cxx preprocessor Checking for program /public/software/compiler/gcc/7.3.1/bin/mpicxx...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/mpicxx...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/mpicxx...found Defined make macro "CXXPP" to "mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicxx -E -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkFortranCompiler from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:1123) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1123) Locate a functional Fortran compiler Checking for program /public/software/compiler/gcc/7.3.1/bin/mpif90...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/mpif90...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/mpif90...found Defined make macro "FC" to "mpif90" Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-sMhvLh/config.setCompilers/conftest /tmp/petsc-sMhvLh/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-sMhvLh/config.setCompilers/conftest /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-sMhvLh/config.setCompilers/conftest /tmp/petsc-sMhvLh/config.setCompilers/conftest.o Testing executable /tmp/petsc-sMhvLh/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-sMhvLh/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-sMhvLh/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: mpif90 --version stdout: GNU Fortran (GCC) 7.3.1 20180303 (Red Hat 7.3.1-5) Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ================================================================================ TEST checkFortranPreprocessor from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:1160) TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1160) Locate a functional Fortran preprocessor Checking for program /public/software/compiler/gcc/7.3.1/bin/mpif90...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/mpif90...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/mpif90...found Defined make macro "FPP" to "mpif90 -E" Deleting "FPP" Checking for program /public/software/compiler/gcc/7.3.1/bin/mpif90...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/mpif90...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/mpif90...found Defined make macro "FPP" to "mpif90 --use cpp32" Deleting "FPP" ================================================================================ TEST checkFortranComments from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:1182) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1182) Make sure fortran comment "!" works Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.F90 Successful compile: Source: program main ! comment end Fortran comments can use ! in column 1 ================================================================================ TEST checkLargeFileIO from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:1317) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1317) ================================================================================ TEST checkArchiver from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:1416) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1416) Check that the archiver exists and can make a library usable by the compiler Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.27-44.base.el7 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.27-44.base.el7 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /public/software/compiler/gcc/7.3.1/bin/ar...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/ar...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/ar...not found Checking for program /public/software/compiler/intel/2021.3.0/bin/intel64/ar...not found Checking for program /public/software/compiler/intel/2021.3.0/mkl/bin/intel64/ar...not found Checking for program /usr/lib64/qt-3.3/bin/ar...not found Checking for program /opt/gridview/pmix/bin/ar...not found Checking for program /opt/gridview/pmix/sbin/ar...not found Checking for program /public/home/test123/perl5/bin/ar...not found Checking for program /public/software/apps/module/bin/ar...not found Checking for program /opt/gridview/slurm/bin/ar...not found Checking for program /opt/gridview/slurm/sbin/ar...not found Checking for program /opt/gridview/munge/bin/ar...not found Checking for program /opt/gridview/munge/sbin/ar...not found Checking for program /opt/gridview/clusquota//bin/ar...not found Checking for program /opt/gridview/clusquota//sbin/ar...not found Checking for program /opt/gridview/clusconf/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /public/software/compiler/gcc/7.3.1/bin/ranlib...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/ranlib...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/ranlib...not found Checking for program /public/software/compiler/intel/2021.3.0/bin/intel64/ranlib...not found Checking for program /public/software/compiler/intel/2021.3.0/mkl/bin/intel64/ranlib...not found Checking for program /usr/lib64/qt-3.3/bin/ranlib...not found Checking for program /opt/gridview/pmix/bin/ranlib...not found Checking for program /opt/gridview/pmix/sbin/ranlib...not found Checking for program /public/home/test123/perl5/bin/ranlib...not found Checking for program /public/software/apps/module/bin/ranlib...not found Checking for program /opt/gridview/slurm/bin/ranlib...not found Checking for program /opt/gridview/slurm/sbin/ranlib...not found Checking for program /opt/gridview/munge/bin/ranlib...not found Checking for program /opt/gridview/munge/sbin/ranlib...not found Checking for program /opt/gridview/clusquota//bin/ranlib...not found Checking for program /opt/gridview/clusquota//sbin/ranlib...not found Checking for program /opt/gridview/clusconf/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-sMhvLh/config.setCompilers/libconf1.a /tmp/petsc-sMhvLh/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib -c /tmp/petsc-sMhvLh/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.27-44.base.el7 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.27-44.base.el7 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /public/software/compiler/gcc/7.3.1/bin/ar...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/ar...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/ar...not found Checking for program /public/software/compiler/intel/2021.3.0/bin/intel64/ar...not found Checking for program /public/software/compiler/intel/2021.3.0/mkl/bin/intel64/ar...not found Checking for program /usr/lib64/qt-3.3/bin/ar...not found Checking for program /opt/gridview/pmix/bin/ar...not found Checking for program /opt/gridview/pmix/sbin/ar...not found Checking for program /public/home/test123/perl5/bin/ar...not found Checking for program /public/software/apps/module/bin/ar...not found Checking for program /opt/gridview/slurm/bin/ar...not found Checking for program /opt/gridview/slurm/sbin/ar...not found Checking for program /opt/gridview/munge/bin/ar...not found Checking for program /opt/gridview/munge/sbin/ar...not found Checking for program /opt/gridview/clusquota//bin/ar...not found Checking for program /opt/gridview/clusquota//sbin/ar...not found Checking for program /opt/gridview/clusconf/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /public/software/compiler/gcc/7.3.1/bin/ranlib...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/ranlib...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/ranlib...not found Checking for program /public/software/compiler/intel/2021.3.0/bin/intel64/ranlib...not found Checking for program /public/software/compiler/intel/2021.3.0/mkl/bin/intel64/ranlib...not found Checking for program /usr/lib64/qt-3.3/bin/ranlib...not found Checking for program /opt/gridview/pmix/bin/ranlib...not found Checking for program /opt/gridview/pmix/sbin/ranlib...not found Checking for program /public/home/test123/perl5/bin/ranlib...not found Checking for program /public/software/apps/module/bin/ranlib...not found Checking for program /opt/gridview/slurm/bin/ranlib...not found Checking for program /opt/gridview/slurm/sbin/ranlib...not found Checking for program /opt/gridview/munge/bin/ranlib...not found Checking for program /opt/gridview/munge/sbin/ranlib...not found Checking for program /opt/gridview/clusquota//bin/ranlib...not found Checking for program /opt/gridview/clusquota//sbin/ranlib...not found Checking for program /opt/gridview/clusconf/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-sMhvLh/config.setCompilers/libconf1.a /tmp/petsc-sMhvLh/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib /tmp/petsc-sMhvLh/config.setCompilers/libconf1.a Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.setCompilers/conftest /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -L/tmp/petsc-sMhvLh/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ================================================================================ TEST checkArchiverRecipeArgfile from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:1480) TESTING: checkArchiverRecipeArgfile from config.setCompilers(config/BuildSystem/config/setCompilers.py:1480) Checks if AR handles @ notation Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr checkRecipeArgfile.a @checkRecipeArgfile.args Defined make macro "AR_ARGFILE" to "yes" ================================================================================ TEST checkSharedLinker from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:1560) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1560) Check that the linker can produce shared libraries Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking shared linker mpicc using flags ['-shared'] Checking for program /public/software/compiler/gcc/7.3.1/bin/mpicc...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/mpicc...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/mpicc...found Defined make macro "LD_SHARED" to "mpicc" Trying C compiler flag Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.setCompilers/conftest -shared /tmp/petsc-sMhvLh/config.setCompilers/conftest.o Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.setCompilers/libconftest.so -shared /tmp/petsc-sMhvLh/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-sMhvLh/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: Nonrepresentable section on output collect2: error: ld returned 1 exit status Rejected C compiler flag because it was not compatible with shared linker mpicc using flags ['-shared'] Running Executable WITHOUT threads to time it out Executing: mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Trying C compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.setCompilers/conftest -shared -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.o Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.setCompilers/conftest -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -L/tmp/petsc-sMhvLh/config.setCompilers -lconftest Using shared linker mpicc with flags ['-shared'] and library extension so Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:1260) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1260) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-sMhvLh/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: Nonrepresentable section on output collect2: error: ld returned 1 exit status Rejected Cxx compiler flag because shared linker cannot handle it Running Executable WITHOUT threads to time it out Executing: mpicxx --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Trying Cxx compiler flag -fPIC for PIC code Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.o Accepted Cxx compiler flag -fPIC for PIC code Trying FC for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers /tmp/petsc-sMhvLh/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-sMhvLh/config.setCompilers/conftest.o: relocation R_X86_64_32 against undefined symbol `xx_' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: Nonrepresentable section on output collect2: error: ld returned 1 exit status Rejected FC compiler flag because shared linker cannot handle it Running Executable WITHOUT threads to time it out Executing: mpif90 --help | head -n 20 stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Trying FC compiler flag -fPIC for PIC code Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.o Accepted FC compiler flag -fPIC for PIC code ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:1673) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1673) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: mpicc -V Trying C linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.setCompilers/conftest -Wl,-rpath,/public/home/test123/chenjh/software/petsc-3.14.6 -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/public/home/test123/chenjh/software/petsc-3.14.6 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: mpicc -V Trying Cxx linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-sMhvLh/config.setCompilers/conftest -Wl,-rpath,/public/home/test123/chenjh/software/petsc-3.14.6 /tmp/petsc-sMhvLh/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/public/home/test123/chenjh/software/petsc-3.14.6 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: mpicc -V Trying FC linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-sMhvLh/config.setCompilers/conftest -Wl,-rpath,/public/home/test123/chenjh/software/petsc-3.14.6 -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/public/home/test123/chenjh/software/petsc-3.14.6 ================================================================================ TEST checkLibC from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:1712) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1712) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:1758) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1758) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-sMhvLh/config.headers Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-sMhvLh/config.setCompilers -I/tmp/petsc-sMhvLh/config.headers /tmp/petsc-sMhvLh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] All intermediate test results are stored in /tmp/petsc-sMhvLh/config.libraries Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.libraries/conftest.o -I/tmp/petsc-sMhvLh/config.libraries -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC /tmp/petsc-sMhvLh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.libraries/conftest -fPIC /tmp/petsc-sMhvLh/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking dynamic linker mpicc using flags ['-shared'] Checking for program /public/software/compiler/gcc/7.3.1/bin/mpicc...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/libfabric/bin/mpicc...not found Checking for program /public/software/mpi/intelmpi/2021.3.0/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "mpicc" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.libraries -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.setCompilers/conftest -shared -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.libraries -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -ldl Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.libraries -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/tmp/petsc-sMhvLh/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-sMhvLh/config.setCompilers/conftest -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -ldl Using dynamic linker mpicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/setCompilers.py:1807) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1807) Output module data as defines and substitutions Substituting "CC" with "mpicc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "mpicxx" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "mpif90" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 7.467348 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/public/home/test123/chenjh/software/petsc-3.14.6/config/PETSc/options/sharedLibraries.py:31) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:31) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/public/home/test123/chenjh/software/petsc-3.14.6/config/PETSc/options/sharedLibraries.py:47) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:47) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Running Executable WITHOUT threads to time it out Executing: mpicc -v stdout: mpigcc for the Intel(R) MPI Library 2021.3 for Linux* Copyright Intel Corporation. Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/public/home/test123/chenjh/software/petsc-3.14.6/config/PETSc/options/sharedLibraries.py:92) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:92) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/public/home/test123/chenjh/software/petsc-3.14.6/config/PETSc/options/sharedLibraries.py:98) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:98) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries child PETSc.options.sharedLibraries 0.062955 ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/public/home/test123/chenjh/software/petsc-3.14.6/config/PETSc/options/indexTypes.py:39) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.001261 ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/compilerFlags.py:81) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:81) Get the default compiler flags Defined make macro "C_VERSION" to "gcc (GCC) 7.3.1 20180303 (Red Hat 7.3.1-5)" Defined make macro "MPICC_SHOW" to "gcc -I"/public/software/mpi/intelmpi/2021.3.0/include" -L"/public/software/mpi/intelmpi/2021.3.0/lib/release" -L"/public/software/mpi/intelmpi/2021.3.0/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "/public/software/mpi/intelmpi/2021.3.0/lib/release" -Xlinker -rpath -Xlinker "/public/software/mpi/intelmpi/2021.3.0/lib" -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl" Trying C compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.libraries -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC -Wall /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.libraries -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC -Wall -Wwrite-strings /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.libraries -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.libraries -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.libraries -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fstack-protector Trying C compiler flag -mfp16-format=ieee Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.libraries -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -mfp16-format=ieee /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: gcc: error: unrecognized command line option ‘-mfp16-format=ieee’ Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to gcc: error: unrecognized command line option ‘-mfp16-format=ieee’ PETSc Error: No output file produced Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.libraries -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Trying C compiler flag -O2 Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.libraries -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O2 /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O2 Defined make macro "Cxx_VERSION" to "g++ (GCC) 7.3.1 20180303 (Red Hat 7.3.1-5)" Defined make macro "MPICXX_SHOW" to "g++ -I"/public/software/mpi/intelmpi/2021.3.0/include" -L"/public/software/mpi/intelmpi/2021.3.0/lib/release" -L"/public/software/mpi/intelmpi/2021.3.0/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "/public/software/mpi/intelmpi/2021.3.0/lib/release" -Xlinker -rpath -Xlinker "/public/software/mpi/intelmpi/2021.3.0/lib" -lmpicxx -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl" Trying Cxx compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -Wall -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -Wall -Wwrite-strings -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fvisibility=hidden Trying Cxx compiler flag -O2 Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O2 -fPIC /tmp/petsc-sMhvLh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O2 Defined make macro "FC_VERSION" to "GNU Fortran (GCC) 7.3.1 20180303 (Red Hat 7.3.1-5)" Defined make macro "MPIFC_SHOW" to "gfortran -I"/public/software/mpi/intelmpi/2021.3.0/include/gfortran/7.1.0" -I"/public/software/mpi/intelmpi/2021.3.0/include" -L"/public/software/mpi/intelmpi/2021.3.0/lib/release" -L"/public/software/mpi/intelmpi/2021.3.0/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "/public/software/mpi/intelmpi/2021.3.0/lib/release" -Xlinker -rpath -Xlinker "/public/software/mpi/intelmpi/2021.3.0/lib" -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl" Trying FC compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC -Wall /tmp/petsc-sMhvLh/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wall Trying FC compiler flag -ffree-line-length-0 Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC -Wall -ffree-line-length-0 /tmp/petsc-sMhvLh/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument /tmp/petsc-sMhvLh/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument Trying FC compiler flag -O2 Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O2 /tmp/petsc-sMhvLh/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -O2 child config.compilerFlags 2.295906 Running Executable WITHOUT threads to time it out Executing: mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and ================================================================================ TEST checkC99Flag from config.compilers(/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/compilers.py:1416) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1416) Check for -std=c99 or equivalent flag Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.libraries -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O2 /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-sMhvLh/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-sMhvLh/config.setCompilers/conftest.c:8:9: error: ‘FLT_ROUNDS’ undeclared (first use in this function) y = FLT_ROUNDS; ^~~~~~~~~~ /tmp/petsc-sMhvLh/config.setCompilers/conftest.c:8:9: note: each undeclared identifier is reported only once for each function it appears in /tmp/petsc-sMhvLh/config.setCompilers/conftest.c:7:11: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] float x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to /tmp/petsc-sMhvLh/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-sMhvLh/config.setCompilers/conftest.c:8:9: error: ‘FLT_ROUNDS’ undeclared (first use in this function) y = FLT_ROUNDS; ^~~~~~~~~~ /tmp/petsc-sMhvLh/config.setCompilers/conftest.c:8:9: note: each undeclared identifier is reported only once for each function it appears in /tmp/petsc-sMhvLh/config.setCompilers/conftest.c:7:11: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] float x[2],y; ^ PETSc Error: No output file produced Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.libraries -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O2 -std=c99 /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-sMhvLh/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-sMhvLh/config.setCompilers/conftest.c:8:9: error: ‘FLT_ROUNDS’ undeclared (first use in this function) y = FLT_ROUNDS; ^~~~~~~~~~ /tmp/petsc-sMhvLh/config.setCompilers/conftest.c:8:9: note: each undeclared identifier is reported only once for each function it appears in /tmp/petsc-sMhvLh/config.setCompilers/conftest.c:7:11: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] float x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Rejecting compiler flag -std=c99 due to nonzero status from link Rejecting compiler flag -std=c99 due to /tmp/petsc-sMhvLh/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-sMhvLh/config.setCompilers/conftest.c:8:9: error: ‘FLT_ROUNDS’ undeclared (first use in this function) y = FLT_ROUNDS; ^~~~~~~~~~ /tmp/petsc-sMhvLh/config.setCompilers/conftest.c:8:9: note: each undeclared identifier is reported only once for each function it appears in /tmp/petsc-sMhvLh/config.setCompilers/conftest.c:7:11: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] float x[2],y; ^ PETSc Error: No output file produced Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.libraries -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O2 -std=gnu99 /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-sMhvLh/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-sMhvLh/config.setCompilers/conftest.c:8:9: error: ‘FLT_ROUNDS’ undeclared (first use in this function) y = FLT_ROUNDS; ^~~~~~~~~~ /tmp/petsc-sMhvLh/config.setCompilers/conftest.c:8:9: note: each undeclared identifier is reported only once for each function it appears in /tmp/petsc-sMhvLh/config.setCompilers/conftest.c:7:11: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] float x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Rejecting compiler flag -std=gnu99 due to nonzero status from link Rejecting compiler flag -std=gnu99 due to /tmp/petsc-sMhvLh/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-sMhvLh/config.setCompilers/conftest.c:8:9: error: ‘FLT_ROUNDS’ undeclared (first use in this function) y = FLT_ROUNDS; ^~~~~~~~~~ /tmp/petsc-sMhvLh/config.setCompilers/conftest.c:8:9: note: each undeclared identifier is reported only once for each function it appears in /tmp/petsc-sMhvLh/config.setCompilers/conftest.c:7:11: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] float x[2],y; ^ PETSc Error: No output file produced Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.libraries -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O2 -std=c11-std=gnu11 /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: gcc: error: unrecognized command line option ‘-std=c11-std=gnu11’; did you mean ‘--std=gnu11’? Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Rejecting compiler flag -std=c11-std=gnu11 due to nonzero status from link Rejecting compiler flag -std=c11-std=gnu11 due to gcc: error: unrecognized command line option ‘-std=c11-std=gnu11’; did you mean ‘--std=gnu11’? PETSc Error: No output file produced Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-sMhvLh/config.setCompilers/conftest.o -I/tmp/petsc-sMhvLh/config.libraries -I/tmp/petsc-sMhvLh/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O2 -c99 /tmp/petsc-sMhvLh/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: gcc: error: unrecognized command line option ‘-c99’ Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Rejecting compiler flag -c99 due to nonzero status from link Rejecting compiler flag -c99 due to gcc: error: unrecognized command line option ‘-c99’ PETSc Error: No output file produced **** Configure header /tmp/petsc-sMhvLh/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_CLANGUAGE_C 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_SHARED_LIBRARIES 1 #endif **** C specific Configure header /tmp/petsc-sMhvLh/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- PETSc requires c99 compiler! Configure could not determine compatible compiler flag. Perhaps you can specify via CFLAGS ******************************************************************************* File "/public/home/test123/chenjh/software/petsc-3.14.6/config/configure.py", line 456, in petsc_configure framework.configure(out = sys.stdout) File "/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/framework.py", line 1253, in configure self.processChildren() File "/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/framework.py", line 1242, in processChildren self.serialEvaluation(self.childGraph) File "/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/framework.py", line 1217, in serialEvaluation child.configure() File "/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/compilers.py", line 1448, in configure self.executeTest(self.checkC99Flag) File "/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/base.py", line 140, in executeTest ret = test(*args,**kargs) File "/public/home/test123/chenjh/software/petsc-3.14.6/config/BuildSystem/config/compilers.py", line 1441, in checkC99Flag if self.c99flag is None: raise RuntimeError('PETSc requires c99 compiler! Configure could not determine compatible compiler flag. Perhaps you can specify via CFLAGS') ================================================================================ Finishing configure run at Thu, 22 Jun 2023 11:38:51 +0800 ================================================================================