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<p class="MsoNormal"><span style="font-size:11.0pt;mso-fareast-language:EN-US">Hello,
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:EN-US">Thanks a lot for your help. What do I have to change in order to make it work again?
<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:EN-US">Best regards,
<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:EN-US">Joauma<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<div style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0cm 0cm 0cm">
<p class="MsoNormal" style="margin-bottom:12.0pt"><b><span style="font-size:12.0pt;color:black">De :
</span></b><span style="font-size:12.0pt;color:black">Matthew Knepley <knepley@gmail.com><br>
<b>Date : </b>mercredi, 31 mai 2023 à 12:55<br>
<b>À : </b>Joauma Marichal <joauma.marichal@uclouvain.be><br>
<b>Cc : </b>PETSc <petsc-maint@mcs.anl.gov>, petsc-users@mcs.anl.gov <petsc-users@mcs.anl.gov><br>
<b>Objet : </b>Re: [petsc-maint] Error during compile<o:p></o:p></span></p>
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<div>
<p class="MsoNormal"><span style="font-size:11.0pt">On Wed, May 31, 2023 at 6:34 AM Joauma Marichal <<a href="mailto:joauma.marichal@uclouvain.be">joauma.marichal@uclouvain.be</a>> wrote:<o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt">Hello,
</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt"> </span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt">Thanks a lot, it worked. However my code does not compile anymore (I haven’t changed anything since yesterday and it worked then). I
get the following error:</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt">It looks like your Homebrew has changed. In particular, the gcc 12.2.0 is missing, and presumably that is where libgfortran was.<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt"> Thanks,<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt"> Matt<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt"> <o:p></o:p></span></p>
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<p class="m2909780015981468163p1"><span class="m2909780015981468163apple-converted-space"><span lang="EN-US"> </span></span><span class="m2909780015981468163s1"><span lang="EN-US">-L/opt/homebrew/Cellar/gcc/12.2.0/lib/gcc/current -lpetsc -lHYPRE -lflapack -lfblas
-lc++ -lmpifort -lmpi -lpmpi -lgfortran -lemutls_w -lquadmath -lc++</span></span><o:p></o:p></p>
<p class="m2909780015981468163p1"><span class="m2909780015981468163s1"><span lang="EN-US">ld: warning: directory not found for option '-L/opt/homebrew/Cellar/mpich/4.1/lib'</span></span><o:p></o:p></p>
<p class="m2909780015981468163p1"><span class="m2909780015981468163s1"><span lang="EN-US">ld: warning: directory not found for option '-L/opt/homebrew/Cellar/gcc/12.2.0/lib/gcc/current/gcc/aarch64-apple-darwin22/12'</span></span><o:p></o:p></p>
<p class="m2909780015981468163p1"><span class="m2909780015981468163s1"><span lang="EN-US">ld: warning: directory not found for option '-L/opt/homebrew/Cellar/gcc/12.2.0/lib/gcc/current/gcc'</span></span><o:p></o:p></p>
<p class="m2909780015981468163p1"><span class="m2909780015981468163s1"><span lang="EN-US">ld: warning: directory not found for option '-L/opt/homebrew/Cellar/gcc/12.2.0/lib/gcc/current'</span></span><o:p></o:p></p>
<p class="m2909780015981468163p1"><span class="m2909780015981468163s1"><span lang="EN-US">ld: library not found for -lgfortran</span></span><o:p></o:p></p>
<p class="m2909780015981468163p1"><span class="m2909780015981468163s1"><span lang="EN-US">clang:
</span></span><span class="m2909780015981468163s2"><b><span lang="EN-US">error: </span>
</b></span><span class="m2909780015981468163s1"><b><span lang="EN-US">linker command failed with exit code 1 (use -v to see invocation)</span></b></span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt"> </span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt"> </span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt">I attach the complete log file.
</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt"> </span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt">Thanks a lot for your help.
</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt"> </span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt">Best regards,
</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt"> </span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt">Joauma</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt"> </span><span style="font-size:11.0pt"><o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt"><b><span style="font-size:12.0pt;color:black">De :
</span></b><span style="font-size:12.0pt;color:black">Matthew Knepley <<a href="mailto:knepley@gmail.com" target="_blank">knepley@gmail.com</a>><br>
<b>Date : </b>mercredi, 31 mai 2023 à 12:03<br>
<b>À : </b>Joauma Marichal <<a href="mailto:joauma.marichal@uclouvain.be" target="_blank">joauma.marichal@uclouvain.be</a>><br>
<b>Cc : </b>PETSc <<a href="mailto:petsc-maint@mcs.anl.gov" target="_blank">petsc-maint@mcs.anl.gov</a>>,
<a href="mailto:petsc-users@mcs.anl.gov" target="_blank">petsc-users@mcs.anl.gov</a> <<a href="mailto:petsc-users@mcs.anl.gov" target="_blank">petsc-users@mcs.anl.gov</a>><br>
<b>Objet : </b>Re: [petsc-maint] Error during compile</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
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<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt">On Wed, May 31, 2023 at 5:25 AM Joauma Marichal <<a href="mailto:joauma.marichal@uclouvain.be" target="_blank">joauma.marichal@uclouvain.be</a>> wrote:<o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt">Hello,</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt"> </span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt">I am writing to you as I am trying to compile petsc on my mac.
</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt"> </span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt">I used:
</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt;color:#212121">$ export PATH=/opt/homebrew/bin:/opt/homebrew/sbin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/usr/local/munki</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt;color:#212121">$ ./configure --download-fblaslapack --download-hypre --prefix=../marha/lib_</span><span lang="EN-US" style="font-size:11.0pt;color:#070706;background:#FFED94">petsc</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt"> <o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt">This is a bug in make 4.4.1. Either upgrade to the latest PETSc release or<o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt"> <o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt"> make OMAKE_PRINTDIR=make all<o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt"> <o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt"> Thanks,<o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt"> <o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt"> Matt<o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt"> <o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt;color:#070706;background:#FFED94">Which has worked previously but today, I get:</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt;color:#070706;background:#FFED94"> </span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="m2909780015981468163m-1386416774045177336p1"><span class="m2909780015981468163m-1386416774045177336s1"><b><span lang="EN-US">**************************ERROR*************************************</span></b></span><o:p></o:p></p>
<p class="m2909780015981468163m-1386416774045177336p1"><span class="m2909780015981468163m-1386416774045177336apple-converted-space"><b><span lang="EN-US">
</span></b></span><span class="m2909780015981468163m-1386416774045177336s1"><b><span lang="EN-US">Error during compile, check arch-darwin-c-debug/lib/petsc/conf/make.log</span></b></span><o:p></o:p></p>
<p class="m2909780015981468163m-1386416774045177336p1"><span class="m2909780015981468163m-1386416774045177336apple-converted-space"><b><span lang="EN-US">
</span></b></span><span class="m2909780015981468163m-1386416774045177336s1"><b><span lang="EN-US">Send it and arch-darwin-c-debug/lib/petsc/conf/configure.log to
</span><a href="mailto:petsc-maint@mcs.anl.gov" target="_blank"><span lang="EN-US">petsc-maint@mcs.anl.gov</span></a></b></span><o:p></o:p></p>
<p class="m2909780015981468163m-1386416774045177336p1"><span class="m2909780015981468163m-1386416774045177336s1"><b><span lang="EN-US">********************************************************************</span></b></span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt;color:#212121"> </span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt;color:#212121"> </span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt;color:#212121">I attach the files.
<br>
<br>
Thanks a lot for your help. </span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt;color:#212121"> </span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt;color:#212121">Best regards,
</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt;color:#212121"> </span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt;color:#212121">Joauma</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt"> </span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt"> </span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-size:11.0pt"> </span><span style="font-size:11.0pt"><o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt"><br clear="all">
<o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt"> <o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span class="m2909780015981468163gmailsignatureprefix"><span style="font-size:11.0pt">--
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt">What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments
lead.<br>
-- Norbert Wiener<o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt"> <o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt"><a href="http://www.cse.buffalo.edu/~knepley/" target="_blank">https://www.cse.buffalo.edu/~knepley/</a><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt">What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>
-- Norbert Wiener<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt"><a href="http://www.cse.buffalo.edu/~knepley/" target="_blank">https://www.cse.buffalo.edu/~knepley/</a><o:p></o:p></span></p>
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