<html><head><meta http-equiv="content-type" content="text/html; charset=utf-8"></head><body style="overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;"><div><br></div><a href="https://petsc.org/release/faq/#what-does-the-message-hwloc-linux-ignoring-pci-device-with-non-16bit-domain-mean">https://petsc.org/release/faq/#what-does-the-message-hwloc-linux-ignoring-pci-device-with-non-16bit-domain-mean</a><br><div><br><blockquote type="cite"><div>On Jan 11, 2023, at 5:03 AM, Sijie Zhang <zhan2355@purdue.edu> wrote:</div><br class="Apple-interchange-newline"><div><div>Hi,<br><br>When I try to install petsc on my workstation, I got the following error. Can you help me with that?<br><br>Thank you and best regards.<br><br>Sijie<br><br>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++<br><br>Running check examples to verify correct installation<br>Using PETSC_DIR=/home/zhangsijie1995/Documents/Package/petsc-3.18.3 and PETSC_ARCH=arch-linux-c-debug<br>Possible error running C/C++ src/snes/tutorials/ex19 with 1 MPI process<br>See https://petsc.org/release/faq/<br>hwloc/linux: Ignoring PCI device with non-16bit domain.<br>Pass --enable-32bits-pci-domain to configure to support such devices<br>(warning: it would break the library ABI, don't enable unless really needed).<br>lid velocity = 0.0016, prandtl # = 1., grashof # = 1.<br>Number of SNES iterations = 2<br>Possible error running C/C++ src/snes/tutorials/ex19 with 2 MPI processes<br>See https://petsc.org/release/faq/<br>hwloc/linux: Ignoring PCI device with non-16bit domain.<br>Pass --enable-32bits-pci-domain to configure to support such devices<br>(warning: it would break the library ABI, don't enable unless really needed).<br>hwloc/linux: Ignoring PCI device with non-16bit domain.<br>Pass --enable-32bits-pci-domain to configure to support such devices<br>(warning: it would break the library ABI, don't enable unless really needed).<br>lid velocity = 0.0016, prandtl # = 1., grashof # = 1.<br>Number of SNES iterations = 2<br>*******************Error detected during compile or link!*******************<br>See https://petsc.org/release/faq/<br>/home/zhangsijie1995/Documents/Package/petsc-3.18.3/src/snes/tutorials ex5f<br>*********************************************************<br>/opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 -I/home/zhangsijie1995/Documents/Package/petsc-3.18.3/include -I/home/zhangsijie1995/Documents/Package/petsc-3.18.3/arch-linux-c-debug/include -I/opt/intel/oneapi/mkl/2023.0.0/include -I/opt/intel/oneapi/mpi/2021.8.0/include ex5f.F90 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/arch-linux-c-debug/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/arch-linux-c-debug/lib -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -lpetsc -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl -o ex5f<br>f951: Warning: Nonexistent include directory ‘I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0’ [-Wmissing-include-dirs]<br>f951: Warning: Nonexistent include directory ‘I_MPI_SUBSTITUTE_INSTALLDIR/include’ [-Wmissing-include-dirs]<br>Possible error running Fortran example src/snes/tutorials/ex5f with 1 MPI process<br>See https://petsc.org/release/faq/<br>hwloc/linux: Ignoring PCI device with non-16bit domain.<br>Pass --enable-32bits-pci-domain to configure to support such devices<br>(warning: it would break the library ABI, don't enable unless really needed).<br>Number of SNES iterations = 3<br>Completed test examples<br>Error while running make check<br>gmake[1]: *** [makefile:149: check] Error 1<br>make: *** [GNUmakefile:17: check] Error 2<span id="cid:54EA7C3D-291C-4722-8A7F-59EE6CA5908A"><configure.log></span><span id="cid:7C60E3A7-F980-4499-8BDD-548FEA5811F0"><make.log></span></div></div></blockquote></div><br></body></html>