<html><head><meta http-equiv="content-type" content="text/html; charset=us-ascii"></head><body style="overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;"><div><br></div> Can you send the code that just does what you indicate below in the FormFunction() and crashes? Then I can run it directly and track down the issue.<div><br></div><div> Barry</div><div><br><div><br><blockquote type="cite"><div>On Nov 3, 2022, at 10:56 AM, Sepideh Kavousi <kavousi@mines.edu> wrote:</div><br class="Apple-interchange-newline"><div><meta charset="UTF-8"><div class="WordSection1" style="page: WordSection1; caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;"><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Barry,</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Even for the case that I am not solving any PDE equations in the FormFunction ( by setting :</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> aF[j][i].vx=aY[j][i].vx;</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> aF[j][i].vy=aY[j][i].vy;</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> aF[j][i].pp=aY[j][i].pp;</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> aF[j][i].U=aY[j][i].U</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> aF[j][i].p=aY[j][i].p; )</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">I will run into segmentation error.</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"><o:p> </o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Let me just follow what you suggested in the following link:<span class="Apple-converted-space"> </span><a href="https://lists.mcs.anl.gov/pipermail/petsc-users/2012-May/013476.html" style="color: purple; text-decoration: underline;">https://lists.mcs.anl.gov/pipermail/petsc-users/2012-May/013476.html</a></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"><o:p> </o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">src/ksp/ksp/tutorials/ex45.c runs perfectly, but when I change bc along x direction from DM_BOUNDARY_NONE to DM_BOUNDARY_PERIODIC and delete (i==0 || i==mx-1) from if (i==0 || j==0 || k==0 || i==mx-1 || j==my-1 || k==mz-1), I run to the following error.</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">I am not sure how else should I implement periodic bc in a problem.</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"><o:p> </o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"><o:p> </o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"><o:p> </o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: Object is in wrong state</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: Matrix is missing diagonal entry 5</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: See<span class="Apple-converted-space"> </span><a href="https://www.mcs.anl.gov/petsc/documentation/faq.html" style="color: purple; text-decoration: underline;">https://www.mcs.anl.gov/petsc/documentation/faq.html</a><span class="Apple-converted-space"> </span>for trouble shooting.</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: Object is in wrong state</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: Matrix is missing diagonal entry 5</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: See<span class="Apple-converted-space"> </span><a href="https://www.mcs.anl.gov/petsc/documentation/faq.html" style="color: purple; text-decoration: underline;">https://www.mcs.anl.gov/petsc/documentation/faq.html</a><span class="Apple-converted-space"> </span>for trouble shooting.</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: [2]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: Object is in wrong state</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: Matrix is missing diagonal entry 5</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: See<span class="Apple-converted-space"> </span><a href="https://www.mcs.anl.gov/petsc/documentation/faq.html" style="color: purple; text-decoration: underline;">https://www.mcs.anl.gov/petsc/documentation/faq.html</a><span class="Apple-converted-space"> </span>for trouble shooting.</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: Petsc Release Version 3.14.2, Dec 03, 2020</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: /scratch/07065/tg863649/convection/periodic_test/one.out on a skylake named<span class="Apple-converted-space"> </span><a href="http://c402-092.stampede2.tacc.utexas.edu/" style="color: purple; text-decoration: underline;">c402-092.stampede2.tacc.utexas.edu</a><span class="Apple-converted-space"> </span>by tg863649 Thu Nov 3 09:53:00 2022</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: [3]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: Object is in wrong state</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: Matrix is missing diagonal entry 5</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: See<span class="Apple-converted-space"> </span><a href="https://www.mcs.anl.gov/petsc/documentation/faq.html" style="color: purple; text-decoration: underline;">https://www.mcs.anl.gov/petsc/documentation/faq.html</a><span class="Apple-converted-space"> </span>for trouble shooting.</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: Petsc Release Version 3.14.2, Dec 03, 2020</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: /scratch/07065/tg863649/convection/periodic_test/one.out on a skylake named<span class="Apple-converted-space"> </span><a href="http://c402-092.stampede2.tacc.utexas.edu/" style="color: purple; text-decoration: underline;">c402-092.stampede2.tacc.utexas.edu</a><span class="Apple-converted-space"> </span>by tg863649 Thu Nov 3 09:53:00 2022</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: [0]PETSC ERROR: Petsc Release Version 3.14.2, Dec 03, 2020</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: /scratch/07065/tg863649/convection/periodic_test/one.out on a skylake named<span class="Apple-converted-space"> </span><a href="http://c402-092.stampede2.tacc.utexas.edu/" style="color: purple; text-decoration: underline;">c402-092.stampede2.tacc.utexas.edu</a><span class="Apple-converted-space"> </span>by tg863649 Thu Nov 3 09:53:00 2022</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: Configure options --with-x=0 -with-pic --with-make-np=12 --download-petsc4py=1 --with-python-exec=/opt/apps/intel18/python2/2.7.16/bin/python2 --with-packages-build-dir=/tmp/petsc-3.14/skylake --with-mpi=1 --with-mpi-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mpi/intel64 --with-scalar-type=real --with-shared-libraries=1 --with-precision=double --with-chaco=1 --download-chaco --with-hypre=1 --download-hypre --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-plapack=1 --download-plapack --with-spai=1 --download-spai --with-sundials=1 --download-sundials --with-elemental=1 --download-elemental --with-cxx-dialect=C++11 --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-fftw=1 --with-fftw-dir=/opt/apps/intel18/impi18_0/fftw3/3.3.8 --with-hdf5=1 --with-hdf5-dir=/opt/apps/intel18/impi18_0/phdf5/1.10.4/x86_64 --download-hpddm --download-slepc --with-mumps=1 --download-mumps --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-scalapack=1 --download-scalapack --with-blacs=1 --download-blacs --with-spooles=1 --download-spooles --with-suitesparse=1 --download-suitesparse --with-superlu_dist=1 --download-superlu_dist --with-superlu=1 --download-superlu --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-zoltan=1 --download-zoltan=1 --download-ptscotch=1 --with-debugging=no --LIBS= --with-blaslapack-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl COPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g" FOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g" CXXOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g"</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Petsc Release Version 3.14.2, Dec 03, 2020</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: /scratch/07065/tg863649/convection/periodic_test/one.out on a skylake named<span class="Apple-converted-space"> </span><a href="http://c402-092.stampede2.tacc.utexas.edu/" style="color: purple; text-decoration: underline;">c402-092.stampede2.tacc.utexas.edu</a><span class="Apple-converted-space"> </span>by tg863649 Thu Nov 3 09:53:00 2022</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: [0]PETSC ERROR: #1 MatILUFactorSymbolic_SeqAIJ() line 1686 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/impls/aij/seq/aijfact.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Configure options --with-x=0 -with-pic --with-make-np=12 --download-petsc4py=1 --with-python-exec=/opt/apps/intel18/python2/2.7.16/bin/python2 --with-packages-build-dir=/tmp/petsc-3.14/skylake --with-mpi=1 --with-mpi-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mpi/intel64 --with-scalar-type=real --with-shared-libraries=1 --with-precision=double --with-chaco=1 --download-chaco --with-hypre=1 --download-hypre --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-plapack=1 --download-plapack --with-spai=1 --download-spai --with-sundials=1 --download-sundials --with-elemental=1 --download-elemental --with-cxx-dialect=C++11 --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-fftw=1 --with-fftw-dir=/opt/apps/intel18/impi18_0/fftw3/3.3.8 --with-hdf5=1 --with-hdf5-dir=/opt/apps/intel18/impi18_0/phdf5/1.10.4/x86_64 --download-hpddm --download-slepc --with-mumps=1 --download-mumps --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-scalapack=1 --download-scalapack --with-blacs=1 --download-blacs --with-spooles=1 --download-spooles --with-suitesparse=1 --download-suitesparse --with-superlu_dist=1 --download-superlu_dist --with-superlu=1 --download-superlu --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-zoltan=1 --download-zoltan=1 --download-ptscotch=1 --with-debugging=no --LIBS= --with-blaslapack-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl COPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g" FOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g" CXXOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g"</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: #1 MatILUFactorSymbolic_SeqAIJ() line 1686 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/impls/aij/seq/aijfact.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Configure options --with-x=0 -with-pic --with-make-np=12 --download-petsc4py=1 --with-python-exec=/opt/apps/intel18/python2/2.7.16/bin/python2 --with-packages-build-dir=/tmp/petsc-3.14/skylake --with-mpi=1 --with-mpi-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mpi/intel64 --with-scalar-type=real --with-shared-libraries=1 --with-precision=double --with-chaco=1 --download-chaco --with-hypre=1 --download-hypre --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-plapack=1 --download-plapack --with-spai=1 --download-spai --with-sundials=1 --download-sundials --with-elemental=1 --download-elemental --with-cxx-dialect=C++11 --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-fftw=1 --with-fftw-dir=/opt/apps/intel18/impi18_0/fftw3/3.3.8 --with-hdf5=1 --with-hdf5-dir=/opt/apps/intel18/impi18_0/phdf5/1.10.4/x86_64 --download-hpddm --download-slepc --with-mumps=1 --download-mumps --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-scalapack=1 --download-scalapack --with-blacs=1 --download-blacs --with-spooles=1 --download-spooles --with-suitesparse=1 --download-suitesparse --with-superlu_dist=1 --download-superlu_dist --with-superlu=1 --download-superlu --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-zoltan=1 --download-zoltan=1 --download-ptscotch=1 --with-debugging=no --LIBS= --with-blaslapack-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl COPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g" FOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g" CXXOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g"</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: #1 MatILUFactorSymbolic_SeqAIJ() line 1686 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/impls/aij/seq/aijfact.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Configure options --with-x=0 -with-pic --with-make-np=12 --download-petsc4py=1 --with-python-exec=/opt/apps/intel18/python2/2.7.16/bin/python2 --with-packages-build-dir=/tmp/petsc-3.14/skylake --with-mpi=1 --with-mpi-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mpi/intel64 --with-scalar-type=real --with-shared-libraries=1 --with-precision=double --with-chaco=1 --download-chaco --with-hypre=1 --download-hypre --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-plapack=1 --download-plapack --with-spai=1 --download-spai --with-sundials=1 --download-sundials --with-elemental=1 --download-elemental --with-cxx-dialect=C++11 --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-fftw=1 --with-fftw-dir=/opt/apps/intel18/impi18_0/fftw3/3.3.8 --with-hdf5=1 --with-hdf5-dir=/opt/apps/intel18/impi18_0/phdf5/1.10.4/x86_64 --download-hpddm --download-slepc --with-mumps=1 --download-mumps --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-scalapack=1 --download-scalapack --with-blacs=1 --download-blacs --with-spooles=1 --download-spooles --with-suitesparse=1 --download-suitesparse --with-superlu_dist=1 --download-superlu_dist --with-superlu=1 --download-superlu --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-zoltan=1 --download-zoltan=1 --download-ptscotch=1 --with-debugging=no --LIBS= --with-blaslapack-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl COPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g" FOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g" CXXOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g"</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: #1 MatILUFactorSymbolic_SeqAIJ() line 1686 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/impls/aij/seq/aijfact.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: #2 MatILUFactorSymbolic() line 6710 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/interface/matrix.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: #2 MatILUFactorSymbolic() line 6710 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/interface/matrix.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: #3 PCSetUp_ILU() line 141 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/factor/ilu/ilu.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: #2 MatILUFactorSymbolic() line 6710 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/interface/matrix.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: #3 PCSetUp_ILU() line 141 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/factor/ilu/ilu.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: [3]PETSC ERROR: #2 MatILUFactorSymbolic() line 6710 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/interface/matrix.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: #3 PCSetUp_ILU() line 141 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/factor/ilu/ilu.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: #4 PCSetUp() line 1009 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/interface/precon.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: [0]PETSC ERROR: #3 PCSetUp_ILU() line 141 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/factor/ilu/ilu.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: #4 PCSetUp() line 1009 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/interface/precon.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: #5 KSPSetUp() line 406 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: #4 PCSetUp() line 1009 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/interface/precon.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: #5 KSPSetUp() line 406 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">#4 PCSetUp() line 1009 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/interface/precon.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: #5 KSPSetUp() line 406 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">#5 KSPSetUp() line 406 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: [2]PETSC ERROR: #6 KSPSolve_Private() line 658 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: [3]PETSC ERROR: #6 KSPSolve_Private() line 658 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: #7 KSPSolve() line 889 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">#6 KSPSolve_Private() line 658 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: #7 KSPSolve() line 889 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: #6 KSPSolve_Private() line 658 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: #7 KSPSolve() line 889 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">#7 KSPSolve() line 889 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: [2]PETSC ERROR: #8 DMDAGetFaceInterpolation() line 493 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/wb/wb.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: [0]PETSC ERROR: #8 DMDAGetFaceInterpolation() line 493 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/wb/wb.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">#8 DMDAGetFaceInterpolation() line 493 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/wb/wb.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: #9 PCSetUp_Exotic() line 667 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/wb/wb.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: #10 PCSetUp() line 1009 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/interface/precon.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">#9 PCSetUp_Exotic() line 667 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/wb/wb.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: #10 PCSetUp() line 1009 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/interface/precon.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: #11 KSPSetUp() line 406 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: #9 PCSetUp_Exotic() line 667 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/wb/wb.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: #10 PCSetUp() line 1009 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/interface/precon.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: [1]PETSC ERROR: #11 KSPSetUp() line 406 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: #12 KSPSolve_Private() line 658 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: #13 KSPSolve() line 889 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: #12 KSPSolve_Private() line 658 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: #13 KSPSolve() line 889 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: #8 DMDAGetFaceInterpolation() line 493 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/wb/wb.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: #9 PCSetUp_Exotic() line 667 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/wb/wb.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: #10 PCSetUp() line 1009 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/interface/precon.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: #11 KSPSetUp() line 406 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: #12 KSPSolve_Private() line 658 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">#11 KSPSetUp() line 406 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: #12 KSPSolve_Private() line 658 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: #13 KSPSolve() line 889 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: #13 KSPSolve() line 889 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: [0]PETSC ERROR: #14 main() line 51 in /scratch/07065/tg863649/convection/periodic_test/one.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">#14 main() line 51 in /scratch/07065/tg863649/convection/periodic_test/one.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: PETSc Option Table entries:</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: -ksp_monitor_short</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: #14 main() line 51 in /scratch/07065/tg863649/convection/periodic_test/one.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: PETSc Option Table entries:</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: -ksp_monitor_short</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: [0]PETSC ERROR: PETSc Option Table entries:</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: -ksp_monitor_short</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: -ksp_type fgmres</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: -mg_levels_ksp_max_it 1</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: -mg_levels_ksp_type gmres</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: -mg_levels_pc_type bjacobi</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: -ksp_type fgmres</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: -mg_levels_ksp_max_it 1</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: -mg_levels_ksp_type gmres</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: -mg_levels_pc_type bjacobi</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: -pc_type exotic</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[1]PETSC ERROR: ----------------End of Error Message -------send entire error message to<span class="Apple-converted-space"> </span><a href="mailto:petsc-maint@mcs.anl.gov" style="color: purple; text-decoration: underline;">petsc-maint@mcs.anl.gov</a>----------</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">-ksp_type fgmres</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: -mg_levels_ksp_max_it 1</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: -mg_levels_ksp_type gmres</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: -mg_levels_pc_type bjacobi</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: -pc_type exotic</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[2]PETSC ERROR: ----------------End of Error Message -------send entire error message to<span class="Apple-converted-space"> </span><a href="mailto:petsc-maint@mcs.anl.gov" style="color: purple; text-decoration: underline;">petsc-maint@mcs.anl.gov</a>----------</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: #14 main() line 51 in /scratch/07065/tg863649/convection/periodic_test/one.c</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: PETSc Option Table entries:</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: -ksp_monitor_short</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: -ksp_type fgmres</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: -mg_levels_ksp_max_it 1</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: -mg_levels_ksp_type gmres</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: -mg_levels_pc_type bjacobi</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: -pc_type exotic</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[3]PETSC ERROR: ----------------End of Error Message -------send entire error message to<span class="Apple-converted-space"> </span><a href="mailto:petsc-maint@mcs.anl.gov" style="color: purple; text-decoration: underline;">petsc-maint@mcs.anl.gov</a>----------</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: -pc_type exotic</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: ----------------End of Error Message -------send entire error message to<span class="Apple-converted-space"> </span><a href="mailto:petsc-maint@mcs.anl.gov" style="color: purple; text-decoration: underline;">petsc-maint@mcs.anl.gov</a>----------</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">application called MPI_Abort(MPI_COMM_SELF, 51073) - process 0</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">application called MPI_Abort(MPI_COMM_SELF, 51073) - process 0</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">application called MPI_Abort(MPI_COMM_SELF, 51073) - process 0</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">application called MPI_Abort(MPI_COMM_SELF, 51073) - process 0</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">TACC: MPI job exited with code: 129</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">TACC: Shutdown complete. Exiting.</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"><o:p> </o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Sent from<span class="Apple-converted-space"> </span><a href="https://go.microsoft.com/fwlink/?LinkId=550986" style="color: purple; text-decoration: underline;">Mail</a><span class="Apple-converted-space"> </span>for Windows</div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"><o:p> </o:p></div><div style="border-style: solid none none; border-top-width: 1pt; border-top-color: rgb(225, 225, 225); padding: 3pt 0in 0in;"><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif; border: none; padding: 0in;"><b>From:<span class="Apple-converted-space"> </span></b><a href="mailto:bsmith@petsc.dev" style="color: purple; text-decoration: underline;">Barry Smith</a><br><b>Sent:<span class="Apple-converted-space"> </span></b>Tuesday, October 25, 2022 7:24 PM<br><b>To:<span class="Apple-converted-space"> </span></b><a href="mailto:kavousi@mines.edu" style="color: purple; text-decoration: underline;">Sepideh Kavousi</a><br><b>Cc:<span class="Apple-converted-space"> </span></b><a href="mailto:petsc-users@mcs.anl.gov" style="color: purple; text-decoration: underline;">petsc-users@mcs.anl.gov</a><br><b>Subject:<span class="Apple-converted-space"> </span></b>Re: [External] [petsc-users] Periodic boundary condition</div></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"><o:p> </o:p></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"><o:p> </o:p></div></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> Sorry I was not clear, at this point you need to type c for continue and then when it crashes in the debugger type bt<o:p></o:p></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"><o:p> </o:p></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> Barry<o:p></o:p></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"><o:p> </o:p></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"><br><br><o:p></o:p></div><blockquote style="margin-top: 5pt; margin-bottom: 5pt;"><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">On Oct 25, 2022, at 6:37 PM, Sepideh Kavousi <<a href="mailto:kavousi@mines.edu" style="color: purple; text-decoration: underline;">kavousi@mines.edu</a>> wrote:<o:p></o:p></div></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"><o:p> </o:p></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Hello Barry,<o:p></o:p></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">When I ran with , the error is about PetscInitialize line (Line 333). When I write bt multiple times, it just continues referring to this line.<o:p></o:p></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">#0 0x00002b701cfed9fd in nanosleep () from /lib64/libc.so.6<o:p></o:p></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">#1 0x00002b701cfed894 in sleep () from /lib64/libc.so.6<o:p></o:p></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">#2 0x00002b70035fb4ae in PetscSleep (s=1) at /home1/apps/intel18/impi18_0/petsc/3.14/src/sys/utils/psleep.c:46<o:p></o:p></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">#3 0x00002b700364b8bb in PetscAttachDebugger () at /home1/apps/intel18/impi18_0/petsc/3.14/src/sys/error/adebug.c:405<o:p></o:p></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">#4 0x00002b700366cfcd in PetscOptionsCheckInitial_Private (help=0x7ffec24c7940 "\t") at /home1/apps/intel18/impi18_0/petsc/3.14/src/sys/objects/init.c:608<o:p></o:p></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">#5 0x00002b7003674cd6 in PetscInitialize (argc=0x7ffec24c7940, args=0x7ffec24c7940, file=0x0, help=0xffffffffffffffff <Address 0xffffffffffffffff out of bounds>)<o:p></o:p></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> at /home1/apps/intel18/impi18_0/petsc/3.14/src/sys/objects/pinit.c:1025<o:p></o:p></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">#6 0x00000000004021ce in main (argc=24, argv=0x7ffec24d14e8) at /scratch/07065/tg863649/convection/test-a9-3-options_small_MAC_pressure_old/one.c:333<o:p></o:p></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Best,<o:p></o:p></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Sepideh<o:p></o:p></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Sent from<span class="apple-converted-space"> </span><a href="https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgo.microsoft.com%2Ffwlink%2F%3FLinkId%3D550986&data=05%7C01%7Ckavousi%40mines.edu%7C69fba9c581cd4ac9adae08dab6e012ed%7C997209e009b346239a4d76afa44a675c%7C0%7C0%7C638023370775017058%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=yuO73mNlFQYh9W95ovJCwG1WueLQNwySyvFCu4xtzpg%3D&reserved=0" style="color: purple; text-decoration: underline;"><span style="color: purple;">Mail</span></a><span class="apple-converted-space"> </span>for Windows<o:p></o:p></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div><div style="border-style: solid none none; border-top-width: 1pt; border-top-color: rgb(225, 225, 225); padding: 3pt 0in 0in;"><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"><b>From:<span class="apple-converted-space"> </span></b><a href="mailto:bsmith@petsc.dev" style="color: purple; text-decoration: underline;"><span style="color: purple;">Barry Smith</span></a><br><b>Sent:<span class="apple-converted-space"> </span></b>Friday, October 21, 2022 10:54 AM<br><b>To:<span class="apple-converted-space"> </span></b><a href="mailto:kavousi@mines.edu" style="color: purple; text-decoration: underline;"><span style="color: purple;">Sepideh Kavousi</span></a><br><b>Cc:<span class="apple-converted-space"> </span></b><a href="mailto:petsc-users@mcs.anl.gov" style="color: purple; text-decoration: underline;"><span style="color: purple;">petsc-users@mcs.anl.gov</span></a><br><b>Subject:<span class="apple-converted-space"> </span></b>Re: [External] [petsc-users] Periodic boundary condition<o:p></o:p></div></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> The problem with the output below is it is not giving a clear indication where the crash occurred.<o:p></o:p></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> #1 User provided function() line 0 in unknown file<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> Run with the exact same options but also -start_in_debugger noxterm It should then crash in the debugger and you can type bt to see the backtrace of where it crashed, send that output.<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> Barry<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> Background: MatFDColoringSetUpBlocked_AIJ_Private() allocates the space that is used when evaluating the function multiple times to get the Jacobian entries. If the FormFunction writes into incorrect locations, then it will corrupt this memory that was allocated in MatFDColoringSetUpBlocked_AIJ_Private() . It does not mean necessarily that there is anything wrong in MatFDColoringSetUpBlocked_AIJ_Private() <o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"><br><br><br><o:p></o:p></div></div><blockquote style="margin-top: 5pt; margin-bottom: 5pt;"><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">On Oct 21, 2022, at 12:32 AM, Sepideh Kavousi <<a href="mailto:kavousi@mines.edu" style="color: purple; text-decoration: underline;"><span style="color: purple;">kavousi@mines.edu</span></a>> wrote:<o:p></o:p></div></div></div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Barry,<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">I ran the code with -malloc_debug and added CHKMEMQ for all the lines inside formfunction. Following is the detail of error.<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Best,<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Sepideh<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: ------------------------------------------------------------------------<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: or see<span class="apple-converted-space"> </span><a href="https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.mcs.anl.gov%2Fpetsc%2Fdocumentation%2Ffaq.html%23valgrind&data=05%7C01%7Ckavousi%40mines.edu%7C69fba9c581cd4ac9adae08dab6e012ed%7C997209e009b346239a4d76afa44a675c%7C0%7C0%7C638023370775173292%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=wkYcffHdhDe8THCP%2Fk6%2FyUO0YXOnILQmsGutldFIk%2BI%3D&reserved=0" style="color: purple; text-decoration: underline;"><span style="color: purple;">https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind</span></a><o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: or try<span class="apple-converted-space"> </span><a href="https://nam04.safelinks.protection.outlook.com/?url=http%3A%2F%2Fvalgrind.org%2F&data=05%7C01%7Ckavousi%40mines.edu%7C69fba9c581cd4ac9adae08dab6e012ed%7C997209e009b346239a4d76afa44a675c%7C0%7C0%7C638023370775173292%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=PYWGQpNE8LOn5NSnN%2BlFzp8rLmoIdaLkcxvwsNa%2F9xo%3D&reserved=0" style="color: purple; text-decoration: underline;"><span style="color: purple;">http://valgrind.org</span></a><span class="apple-converted-space"> </span>on GNU/linux and Apple Mac OS X to find memory corruption errors<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: to get more information on the crash.<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: PetscMallocValidate: error detected at PetscError() line 401 in /home1/apps/intel18/impi18_0/petsc/3.14/src/sys/error/err.c<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: Memory [id=0(73960000)] at address 0x2b5aed6ab050 is corrupted (probably write past end of array)<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: Memory originally allocated in MatFDColoringSetUpBlocked_AIJ_Private() line 125 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/impls/aij/seq/fdaij.c<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: Signal received<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: See<span class="apple-converted-space"> </span><a href="https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.mcs.anl.gov%2Fpetsc%2Fdocumentation%2Ffaq.html&data=05%7C01%7Ckavousi%40mines.edu%7C69fba9c581cd4ac9adae08dab6e012ed%7C997209e009b346239a4d76afa44a675c%7C0%7C0%7C638023370775173292%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=FBQNgDbFWKb1Qa9cwajS%2B0JNB5PfIqrvbRIFd%2FI8x3I%3D&reserved=0" style="color: purple; text-decoration: underline;"><span style="color: purple;">https://www.mcs.anl.gov/petsc/documentation/faq.html</span></a><span class="apple-converted-space"> </span>for trouble shooting.<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: Petsc Release Version 3.14.2, Dec 03, 2020<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: ./one.out on a skylake named<span class="apple-converted-space"> </span><a href="https://nam04.safelinks.protection.outlook.com/?url=http%3A%2F%2Fc415-063.stampede2.tacc.utexas.edu%2F&data=05%7C01%7Ckavousi%40mines.edu%7C69fba9c581cd4ac9adae08dab6e012ed%7C997209e009b346239a4d76afa44a675c%7C0%7C0%7C638023370775173292%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=JGr48qlrEtYEaC5NzX9LtVKkHdnPNDK8AbN6pbKUJs0%3D&reserved=0" style="color: purple; text-decoration: underline;"><span style="color: purple;">c415-063.stampede2.tacc.utexas.edu</span></a><span class="apple-converted-space"> </span>by tg863649 Thu Oct 20 23:30:05 2022<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: Configure options --with-x=0 -with-pic --with-make-np=12 --download-petsc4py=1 --with-python-exec=/opt/apps/intel18/python2/2.7.16/bin/python2 --with-packages-build-dir=/tmp/petsc-3.14/skylake --with-mpi=1 --with-mpi-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mpi/intel64 --with-scalar-type=real --with-shared-libraries=1 --with-precision=double --with-chaco=1 --download-chaco --with-hypre=1 --download-hypre --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-plapack=1 --download-plapack --with-spai=1 --download-spai --with-sundials=1 --download-sundials --with-elemental=1 --download-elemental --with-cxx-dialect=C++11 --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-fftw=1 --with-fftw-dir=/opt/apps/intel18/impi18_0/fftw3/3.3.8 --with-hdf5=1 --with-hdf5-dir=/opt/apps/intel18/impi18_0/phdf5/1.10.4/x86_64 --download-hpddm --download-slepc --with-mumps=1 --download-mumps --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-scalapack=1 --download-scalapack --with-blacs=1 --download-blacs --with-spooles=1 --download-spooles --with-suitesparse=1 --download-suitesparse --with-superlu_dist=1 --download-superlu_dist --with-superlu=1 --download-superlu --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-zoltan=1 --download-zoltan=1 --download-ptscotch=1 --with-debugging=no --LIBS= --with-blaslapack-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl COPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g" FOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g" CXXOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g"<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: #1 User provided function() line 0 in unknown file<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: Checking the memory for corruption.<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: PetscMallocValidate: error detected at PetscSignalHandlerDefault() line 170 in /home1/apps/intel18/impi18_0/petsc/3.14/src/sys/error/signal.c<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: Memory [id=0(73960000)] at address 0x2b5aed6ab050 is corrupted (probably write past end of array)<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[0]PETSC ERROR: Memory originally allocated in MatFDColoringSetUpBlocked_AIJ_Private() line 125 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/impls/aij/seq/fdaij.c<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">application called MPI_Abort(MPI_COMM_WORLD, 50176059) - process 0<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">[unset]: readline failed<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Sent from<span class="apple-converted-space"> </span><a href="https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgo.microsoft.com%2Ffwlink%2F%3FLinkId%3D550986&data=05%7C01%7Ckavousi%40mines.edu%7C69fba9c581cd4ac9adae08dab6e012ed%7C997209e009b346239a4d76afa44a675c%7C0%7C0%7C638023370775173292%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=3AHsDWTVLXZcgkPccM9Xwmq6a98y2zM3b1fS8FxwTm4%3D&reserved=0" style="color: purple; text-decoration: underline;"><span style="color: purple;">Mail</span></a><span class="apple-converted-space"> </span>for Windows<o:p></o:p></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div><div style="border-style: solid none none; border-top-width: 1pt; border-top-color: rgb(225, 225, 225); padding: 3pt 0in 0in;"><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"><b>From:<span class="apple-converted-space"> </span></b><a href="mailto:bsmith@petsc.dev" style="color: purple; text-decoration: underline;"><span style="color: purple;">Barry Smith</span></a><br><b>Sent:<span class="apple-converted-space"> </span></b>Thursday, October 20, 2022 10:27 PM<br><b>To:<span class="apple-converted-space"> </span></b><a href="mailto:kavousi@mines.edu" style="color: purple; text-decoration: underline;"><span style="color: purple;">Sepideh Kavousi</span></a><br><b>Cc:<span class="apple-converted-space"> </span></b><a href="mailto:petsc-users@mcs.anl.gov" style="color: purple; text-decoration: underline;"><span style="color: purple;">petsc-users@mcs.anl.gov</span></a><br><b>Subject:<span class="apple-converted-space"> </span></b>[External] Re: [petsc-users] Periodic boundary condition<o:p></o:p></div></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> Some of the valgrind information does not appear to make sense<o:p></o:p></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">PetscMemcpy() is not calling SNESSolve() so I suspect there must be some serious corruption of something to this impossible stack trace<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div></div><div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FD160F: SNESSolve (snes.c:4569)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: PetscMemcpy (bdf.c:223)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">From<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div></div><div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x5F10977: MatFDColoringSetUpBlocked_AIJ_Private (fdaij.c:146)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5F10977: MatFDColoringSetUp_SeqXAIJ.A (fdaij.c:284)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x585892A: MatFDColoringSetUp (fdmatrix.c:242)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FE5037: SNESComputeJacobianDefaultColor (snesj2.c:79)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FC8E4E: SNESComputeJacobian (snes.c:2717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70236E7: SNESSolve_NEWTONTR (tr.c:324)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FD160F: SNESSolve (snes.c:4569)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: PetscMemcpy (bdf.c:223)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: PetscCitationsRegister (petscsys.h:2689)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: TSStep_BDF.A (bdf.c:265)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C363A: TSStep (ts.c:3757)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C1999: TSSolve (ts.c:4154)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x402594: main (one.c:391)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">I suggest you run with -malloc_debug instead of valgrind and see if any errors are reported. If so you can add the macro CHKMEMQ; inside your function evaluation where you write to memory to see if anything is writing to the wrong location. For example wherever you assign aF such as<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">aF[j][i].vx=(x3+x4+x5+x6+x7+x8+x9-x1-x2)*user->hx;<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">this can help you determine the exact line number where you are writing to the wrong location and determine what might be the cause.<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"><br><br><br><br><o:p></o:p></div></div></div><blockquote style="margin-top: 5pt; margin-bottom: 5pt;"><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">On Oct 20, 2022, at 6:45 PM, Sepideh Kavousi <<a href="mailto:kavousi@mines.edu" style="color: purple; text-decoration: underline;"><span style="color: purple;">kavousi@mines.edu</span></a>> wrote:<o:p></o:p></div></div></div></div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div><div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Hello,<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">I want to solve my 5 PDEs based on finite difference method using periodic BC in x-direction and non-periodic in y-direction but I run into error (Segmentation Violation, probably memory access out of range).<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">For this, I discretize my equation in FormFunction function. My PDE discretization in (i,j) node needs data on (i+1,j), (i+2,j), (i-1,j), (i-2,j), (i,j+1), (i,j+2), (i,j-1), (i,j-2) points.<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">In my previous codes that the x-direction was non-periodic (no flux) boundary condition, I:<o:p></o:p></div></div></div></div><div style="margin-left: 0.75in;"><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif; text-indent: -0.5in;">i)<span style="font-size: 7pt; font-family: "Times New Roman", serif;"> <span class="apple-converted-space"> </span></span>implemented the no flux BC for i=0 and i=Nx-1,<o:p></o:p></div></div></div></div><div style="margin-left: 0.75in;"><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif; text-indent: -0.5in;">ii)<span style="font-size: 7pt; font-family: "Times New Roman", serif;"> <span class="apple-converted-space"> </span></span>set i+2= Nx-1 in discretizing (Nx-2,j) and i+2= 0 in discretizing (1,j)<o:p></o:p></div></div></div></div><div style="margin-left: 0.75in;"><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif; text-indent: -0.5in;">iii)<span style="font-size: 7pt; font-family: "Times New Roman", serif;"> <span class="apple-converted-space"> </span></span>discretized my equation for i=1..Nx-2.<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">I am not sure how I should do the periodic BC. From the following discussions (<a href="https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.mcs.anl.gov%2Fpipermail%2Fpetsc-users%2F2012-May%2F013476.html&data=05%7C01%7Ckavousi%40mines.edu%7C69fba9c581cd4ac9adae08dab6e012ed%7C997209e009b346239a4d76afa44a675c%7C0%7C0%7C638023370775173292%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=b8Fmx5UHkTufu0S8IXqMvwObom2wGbMQd0TXySv%2FV2E%3D&reserved=0" style="color: purple; text-decoration: underline;"><span style="color: purple;">https://lists.mcs.anl.gov/pipermail/petsc-users/2012-May/013476.html</span></a><span class="apple-converted-space"> </span> and<a href="https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.mcs.anl.gov%2Fpipermail%2Fpetsc-users%2F2016-May%2F029273.html&data=05%7C01%7Ckavousi%40mines.edu%7C69fba9c581cd4ac9adae08dab6e012ed%7C997209e009b346239a4d76afa44a675c%7C0%7C0%7C638023370775173292%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=%2B%2F9VsgTbaXPiqR8twtCtpSX7EEKpmVdHrm6tKI6HqjI%3D&reserved=0" style="color: purple; text-decoration: underline;"><span style="color: purple;">https://lists.mcs.anl.gov/pipermail/petsc-users/2016-May/029273.html</span></a>), I guess I should not do step (i) (stated above) for the x-boundaries and just do step (iii) for i=0..Nx-1. If I just focus on solving 2 of the PDEs which does need data on (i+2,j), (i-2,j), (i,j+2), (i,j-2) points for discretizing equation in (i,j) node, I still run into error:<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Running with Valgrind (just 1 processor) gave the following file. I did not find any information which gives me hint on the error source.<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Can you please help me to find the error?<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Best,<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Sepideh<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x4C29E39: malloc (vg_replace_malloc.c:309)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79E59B: MPID_Init (mpid_init.c:1649)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x2183B805: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218323C1: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218341C7: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x400F9C2: _dl_init (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x401459D: dl_open_worker (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x4013B8A: _dl_open (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1AEA4FAA: dlopen_doit (in /usr/lib64/libdl-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1AEA55AC: _dlerror_run (in /usr/lib64/libdl-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1AEA5040: dlopen@@GLIBC_2.2.5 (in /usr/lib64/libdl-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B8198DC: MPID_nem_ofi_init (ofi_init.c:158)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x2183B810: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218323C1: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218341C7: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x400F9C2: _dl_init (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x401459D: dl_open_worker (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x4013B8A: _dl_open (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1AEA4FAA: dlopen_doit (in /usr/lib64/libdl-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1AEA55AC: _dlerror_run (in /usr/lib64/libdl-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1AEA5040: dlopen@@GLIBC_2.2.5 (in /usr/lib64/libdl-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B8198DC: MPID_nem_ofi_init (ofi_init.c:158)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x218323C8: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218341C7: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x400F9C2: _dl_init (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x401459D: dl_open_worker (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x4013B8A: _dl_open (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1AEA4FAA: dlopen_doit (in /usr/lib64/libdl-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1AEA55AC: _dlerror_run (in /usr/lib64/libdl-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1AEA5040: dlopen@@GLIBC_2.2.5 (in /usr/lib64/libdl-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B8198DC: MPID_nem_ofi_init (ofi_init.c:158)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Use of uninitialised value of size 8<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x218323CF: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218341C7: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x400F9C2: _dl_init (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x401459D: dl_open_worker (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x4013B8A: _dl_open (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1AEA4FAA: dlopen_doit (in /usr/lib64/libdl-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1AEA55AC: _dlerror_run (in /usr/lib64/libdl-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1AEA5040: dlopen@@GLIBC_2.2.5 (in /usr/lib64/libdl-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B8198DC: MPID_nem_ofi_init (ofi_init.c:158)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Use of uninitialised value of size 8<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x218323E5: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218341C7: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x400F9C2: _dl_init (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x401459D: dl_open_worker (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x4013B8A: _dl_open (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1AEA4FAA: dlopen_doit (in /usr/lib64/libdl-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1AEA55AC: _dlerror_run (in /usr/lib64/libdl-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1AEA5040: dlopen@@GLIBC_2.2.5 (in /usr/lib64/libdl-2.17.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B8198DC: MPID_nem_ofi_init (ofi_init.c:158)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x2183B805: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218323C1: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218343EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x2180E4F3: psm2_init (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x2112D7E6: psmx2_getinfo (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x210AC753: fi_getinfo@@FABRIC_1.2 (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B819AB7: MPID_nem_ofi_init (ofi_init.c:245)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x2183B810: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218323C1: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218343EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x2180E4F3: psm2_init (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x2112D7E6: psmx2_getinfo (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x210AC753: fi_getinfo@@FABRIC_1.2 (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B819AB7: MPID_nem_ofi_init (ofi_init.c:245)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x218323C8: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218343EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x2180E4F3: psm2_init (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x2112D7E6: psmx2_getinfo (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x210AC753: fi_getinfo@@FABRIC_1.2 (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B819AB7: MPID_nem_ofi_init (ofi_init.c:245)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Use of uninitialised value of size 8<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x218323CF: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218343EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x2180E4F3: psm2_init (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x2112D7E6: psmx2_getinfo (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x210AC753: fi_getinfo@@FABRIC_1.2 (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B819AB7: MPID_nem_ofi_init (ofi_init.c:245)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Use of uninitialised value of size 8<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x218323E5: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218343EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x2180E4F3: psm2_init (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x2112D7E6: psmx2_getinfo (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x210AC753: fi_getinfo@@FABRIC_1.2 (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B819AB7: MPID_nem_ofi_init (ofi_init.c:245)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x2183B69A: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218371EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x21837077: hfi_get_port_lid (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x21836F9A: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x21834872: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x217F7F5D: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x217FDC29: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x217FCA91: psm2_ep_open (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x2112FB19: psmx2_trx_ctxt_alloc (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x21138089: psmx2_ep_open (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B81A6A1: fi_endpoint (fi_endpoint.h:155)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B81A6A1: MPID_nem_ofi_init (ofi_init.c:377)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x2183B7B8: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218371EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x21837077: hfi_get_port_lid (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x21836F9A: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x21834872: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x217F7F5D: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x217FDC29: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x217FCA91: psm2_ep_open (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x2112FB19: psmx2_trx_ctxt_alloc (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x21138089: psmx2_ep_open (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B81A6A1: fi_endpoint (fi_endpoint.h:155)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B81A6A1: MPID_nem_ofi_init (ofi_init.c:377)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x2183B69A: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218371EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x21837077: hfi_get_port_lid (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x217F88C8: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x217FDC29: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x217FCA91: psm2_ep_open (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x2112FB19: psmx2_trx_ctxt_alloc (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x21138089: psmx2_ep_open (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B81A6A1: fi_endpoint (fi_endpoint.h:155)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B81A6A1: MPID_nem_ofi_init (ofi_init.c:377)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x2183B7B8: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218371EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x21837077: hfi_get_port_lid (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x217F88C8: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x217FDC29: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x217FCA91: psm2_ep_open (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x2112FB19: psmx2_trx_ctxt_alloc (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x21138089: psmx2_ep_open (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B81A6A1: fi_endpoint (fi_endpoint.h:155)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B81A6A1: MPID_nem_ofi_init (ofi_init.c:377)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x2183B69A: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218371EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x21837077: hfi_get_port_lid (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x217F916B: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x217FDC29: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x217FCA91: psm2_ep_open (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x2112FB19: psmx2_trx_ctxt_alloc (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x21138089: psmx2_ep_open (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B81A6A1: fi_endpoint (fi_endpoint.h:155)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B81A6A1: MPID_nem_ofi_init (ofi_init.c:377)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x2183B7B8: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x218371EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x21837077: hfi_get_port_lid (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x217F916B: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x217FDC29: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x217FCA91: psm2_ep_open (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x2112FB19: psmx2_trx_ctxt_alloc (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x21138089: psmx2_ep_open (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B81A6A1: fi_endpoint (fi_endpoint.h:155)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B81A6A1: MPID_nem_ofi_init (ofi_init.c:377)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x1B1DA260: __I_MPI___intel_sse2_strncmp (in /opt/intel/compilers_and_libraries_2018.2.199/linux/mpi/intel64/lib/libmpifort.so.12.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B8CFBA1: ??? (simple_pmi.c:2376)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B8CBDAD: PMIi_InitIfSingleton (simple_pmi.c:2883)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B8CBDAD: iPMI_KVS_Get (simple_pmi.c:751)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7CCC1E: ??? (mpidi_pg.c:949)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B817EAA: MPID_nem_ofi_post_init (ofi_init.c:1736)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B3575: MPID_nem_init_post (mpid_nem_init.c:1421)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B5806E3: MPIDI_CH3_Init (ch3_init.c:146)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x1B1DA383: __I_MPI___intel_sse2_strncmp (in /opt/intel/compilers_and_libraries_2018.2.199/linux/mpi/intel64/lib/libmpifort.so.12.0)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B8CFBA1: ??? (simple_pmi.c:2376)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B8CBDAD: PMIi_InitIfSingleton (simple_pmi.c:2883)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B8CBDAD: iPMI_KVS_Get (simple_pmi.c:751)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7CCC1E: ??? (mpidi_pg.c:949)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B817EAA: MPID_nem_ofi_post_init (ofi_init.c:1736)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B7B3575: MPID_nem_init_post (mpid_nem_init.c:1421)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B5806E3: MPIDI_CH3_Init (ch3_init.c:146)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x1E48032E: __intel_sse4_strcpy (in /opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin/libirc.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x51FD8BE: PetscStrcpy (str.c:354)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x51FD7A3: PetscStrallocpy (str.c:188)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x52A39CE: PetscEventRegLogRegister (eventlog.c:313)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x527D89A: PetscLogEventRegister (plog.c:693)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6A56A20: PCBDDCInitializePackage (bddc.c:3115)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6E1A515: PCInitializePackage (dlregisksp.c:59)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6DB1A86: PCCreate (precon.c:382)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6E05167: KSPGetPC (itfunc.c:1837)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6E0FC5C: KSPSetDM (iterativ.c:1150)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FDD27B: SNESSetDM (snes.c:5402)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70B85F7: TSGetSNES (ts.c:2914)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70BE430: TSSetDM (ts.c:4949)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x402496: main (one.c:378)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x1E4782BA: __intel_ssse3_strncpy (in /opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin/libirc.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x51FFD24: PetscStrncpy (str.c:392)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x51FEB03: PetscStrreplace (str.c:1142)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x52C9958: PetscViewerFileSetName (filev.c:659)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x52B743B: PetscViewerVTKOpen (vtkv.c:279)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C76E6: TSMonitorSolutionVTK (ts.c:5580)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40313C: FormFunction (one.c:120)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x7066531: TSComputeIFunction_DMDA (dmdats.c:82)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70BA5EF: TSComputeIFunction (ts.c:857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711E2DC: SNESTSFormFunction_BDF (bdf.c:368)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C6E46: SNESTSFormFunction (ts.c:5014)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FDC8A6: SNESComputeFunction (snes.c:2383)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x7023556: SNESSolve_NEWTONTR (tr.c:297)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FD160F: SNESSolve (snes.c:4569)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: PetscMemcpy (bdf.c:223)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: PetscCitationsRegister (petscsys.h:2689)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: TSStep_BDF.A (bdf.c:265)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C363A: TSStep (ts.c:3757)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C1999: TSSolve (ts.c:4154)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x402594: main (one.c:391)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x1E4782BA: __intel_ssse3_strncpy (in /opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin/libirc.so)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x51FFD24: PetscStrncpy (str.c:392)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x51FEB03: PetscStrreplace (str.c:1142)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5224E4B: PetscFOpen (mpiuopen.c:52)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x63A074B: DMDAVTKWriteAll_VTS.A (grvtk.c:72)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x639A589: DMDAVTKWriteAll (grvtk.c:545)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x52B66F3: PetscViewerFlush_VTK (vtkv.c:100)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x52CFAAE: PetscViewerFlush (flush.c:26)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x52CEA95: PetscViewerDestroy (view.c:113)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C7717: TSMonitorSolutionVTK (ts.c:5582)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x40313C: FormFunction (one.c:120)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x7066531: TSComputeIFunction_DMDA (dmdats.c:82)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70BA5EF: TSComputeIFunction (ts.c:857)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711E2DC: SNESTSFormFunction_BDF (bdf.c:368)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C6E46: SNESTSFormFunction (ts.c:5014)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FDC8A6: SNESComputeFunction (snes.c:2383)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x7023556: SNESSolve_NEWTONTR (tr.c:297)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FD160F: SNESSolve (snes.c:4569)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: PetscMemcpy (bdf.c:223)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: PetscCitationsRegister (petscsys.h:2689)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: TSStep_BDF.A (bdf.c:265)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C363A: TSStep (ts.c:3757)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x5F10977: MatFDColoringSetUpBlocked_AIJ_Private (fdaij.c:146)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5F10977: MatFDColoringSetUp_SeqXAIJ.A (fdaij.c:284)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x585892A: MatFDColoringSetUp (fdmatrix.c:242)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FE5037: SNESComputeJacobianDefaultColor (snesj2.c:79)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FC8E4E: SNESComputeJacobian (snes.c:2717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70236E7: SNESSolve_NEWTONTR (tr.c:324)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FD160F: SNESSolve (snes.c:4569)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: PetscMemcpy (bdf.c:223)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: PetscCitationsRegister (petscsys.h:2689)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: TSStep_BDF.A (bdf.c:265)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C363A: TSStep (ts.c:3757)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C1999: TSSolve (ts.c:4154)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x402594: main (one.c:391)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Invalid write of size 4<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x5F10983: MatFDColoringSetUpBlocked_AIJ_Private (fdaij.c:150)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5F10983: MatFDColoringSetUp_SeqXAIJ.A (fdaij.c:284)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x585892A: MatFDColoringSetUp (fdmatrix.c:242)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FE5037: SNESComputeJacobianDefaultColor (snesj2.c:79)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FC8E4E: SNESComputeJacobian (snes.c:2717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70236E7: SNESSolve_NEWTONTR (tr.c:324)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FD160F: SNESSolve (snes.c:4569)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: PetscMemcpy (bdf.c:223)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: PetscCitationsRegister (petscsys.h:2689)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: TSStep_BDF.A (bdf.c:265)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C363A: TSStep (ts.c:3757)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C1999: TSSolve (ts.c:4154)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x402594: main (one.c:391)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Address 0x3a94fa80 is 0 bytes after a block of size 73,960,000 alloc'd<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x4C2C480: memalign (vg_replace_malloc.c:909)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x522FFE2: PetscMallocAlign (mal.c:52)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x52305F9: PetscMallocA (mal.c:418)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5F10778: MatFDColoringSetUpBlocked_AIJ_Private (fdaij.c:125)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5F10778: MatFDColoringSetUp_SeqXAIJ.A (fdaij.c:284)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x585892A: MatFDColoringSetUp (fdmatrix.c:242)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FE5037: SNESComputeJacobianDefaultColor (snesj2.c:79)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FC8E4E: SNESComputeJacobian (snes.c:2717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70236E7: SNESSolve_NEWTONTR (tr.c:324)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FD160F: SNESSolve (snes.c:4569)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: PetscMemcpy (bdf.c:223)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: PetscCitationsRegister (petscsys.h:2689)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: TSStep_BDF.A (bdf.c:265)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C363A: TSStep (ts.c:3757)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C1999: TSSolve (ts.c:4154)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x402594: main (one.c:391)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<span class="apple-converted-space"> </span><o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Invalid write of size 8<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x5F10991: MatFDColoringSetUpBlocked_AIJ_Private (fdaij.c:151)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5F10991: MatFDColoringSetUp_SeqXAIJ.A (fdaij.c:284)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x585892A: MatFDColoringSetUp (fdmatrix.c:242)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FE5037: SNESComputeJacobianDefaultColor (snesj2.c:79)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FC8E4E: SNESComputeJacobian (snes.c:2717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70236E7: SNESSolve_NEWTONTR (tr.c:324)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FD160F: SNESSolve (snes.c:4569)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: PetscMemcpy (bdf.c:223)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: PetscCitationsRegister (petscsys.h:2689)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: TSStep_BDF.A (bdf.c:265)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C363A: TSStep (ts.c:3757)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C1999: TSSolve (ts.c:4154)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x402594: main (one.c:391)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== Address 0x3a94fa88 is 8 bytes after a block of size 73,960,000 alloc'd<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== at 0x4C2C480: memalign (vg_replace_malloc.c:909)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x522FFE2: PetscMallocAlign (mal.c:52)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x52305F9: PetscMallocA (mal.c:418)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5F10778: MatFDColoringSetUpBlocked_AIJ_Private (fdaij.c:125)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x5F10778: MatFDColoringSetUp_SeqXAIJ.A (fdaij.c:284)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x585892A: MatFDColoringSetUp (fdmatrix.c:242)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FE5037: SNESComputeJacobianDefaultColor (snesj2.c:79)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FC8E4E: SNESComputeJacobian (snes.c:2717)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70236E7: SNESSolve_NEWTONTR (tr.c:324)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x6FD160F: SNESSolve (snes.c:4569)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: PetscMemcpy (bdf.c:223)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: PetscCitationsRegister (petscsys.h:2689)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x711917E: TSStep_BDF.A (bdf.c:265)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C363A: TSStep (ts.c:3757)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x70C1999: TSSolve (ts.c:4154)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074== by 0x402594: main (one.c:391)<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">==236074==<o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;"> <o:p></o:p></div></div></div></div><div><div><div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;">Sent from<span class="apple-converted-space"> </span><a href="https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgo.microsoft.com%2Ffwlink%2F%3FLinkId%3D550986&data=05%7C01%7Ckavousi%40mines.edu%7C69fba9c581cd4ac9adae08dab6e012ed%7C997209e009b346239a4d76afa44a675c%7C0%7C0%7C638023370775173292%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=3AHsDWTVLXZcgkPccM9Xwmq6a98y2zM3b1fS8FxwTm4%3D&reserved=0" style="color: purple; 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