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<p class="MsoNormal">Barry,</p>
<p class="MsoNormal">Even for the case that I am not solving any PDE equations in the FormFunction ( by setting :</p>
<p class="MsoNormal"> aF[j][i].vx=aY[j][i].vx;</p>
<p class="MsoNormal"> aF[j][i].vy=aY[j][i].vy;</p>
<p class="MsoNormal"> aF[j][i].pp=aY[j][i].pp;</p>
<p class="MsoNormal"> aF[j][i].U=aY[j][i].U</p>
<p class="MsoNormal"> aF[j][i].p=aY[j][i].p; )</p>
<p class="MsoNormal">I will run into segmentation error.</p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Let me just follow what you suggested in the following link:
<a href="https://lists.mcs.anl.gov/pipermail/petsc-users/2012-May/013476.html">https://lists.mcs.anl.gov/pipermail/petsc-users/2012-May/013476.html</a>
</p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">src/ksp/ksp/tutorials/ex45.c runs perfectly, but when I change bc along x direction from DM_BOUNDARY_NONE to DM_BOUNDARY_PERIODIC and delete (i==0 || i==mx-1) from if (i==0 || j==0 || k==0 || i==mx-1 || j==my-1 || k==mz-1),
I run to the following error.</p>
<p class="MsoNormal">I am not sure how else should I implement periodic bc in a problem.</p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</p>
<p class="MsoNormal">[0]PETSC ERROR: Object is in wrong state</p>
<p class="MsoNormal">[0]PETSC ERROR: Matrix is missing diagonal entry 5</p>
<p class="MsoNormal">[0]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.</p>
<p class="MsoNormal">[1]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</p>
<p class="MsoNormal">[1]PETSC ERROR: Object is in wrong state</p>
<p class="MsoNormal">[1]PETSC ERROR: Matrix is missing diagonal entry 5</p>
<p class="MsoNormal">[1]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.</p>
<p class="MsoNormal">[1]PETSC ERROR: [2]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</p>
<p class="MsoNormal">[2]PETSC ERROR: Object is in wrong state</p>
<p class="MsoNormal">[2]PETSC ERROR: Matrix is missing diagonal entry 5</p>
<p class="MsoNormal">[2]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.</p>
<p class="MsoNormal">[2]PETSC ERROR: Petsc Release Version 3.14.2, Dec 03, 2020</p>
<p class="MsoNormal">[2]PETSC ERROR: /scratch/07065/tg863649/convection/periodic_test/one.out on a skylake named c402-092.stampede2.tacc.utexas.edu by tg863649 Thu Nov 3 09:53:00 2022</p>
<p class="MsoNormal">[2]PETSC ERROR: [3]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</p>
<p class="MsoNormal">[3]PETSC ERROR: Object is in wrong state</p>
<p class="MsoNormal">[3]PETSC ERROR: Matrix is missing diagonal entry 5</p>
<p class="MsoNormal">[3]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.</p>
<p class="MsoNormal">[3]PETSC ERROR: Petsc Release Version 3.14.2, Dec 03, 2020</p>
<p class="MsoNormal">[3]PETSC ERROR: /scratch/07065/tg863649/convection/periodic_test/one.out on a skylake named c402-092.stampede2.tacc.utexas.edu by tg863649 Thu Nov 3 09:53:00 2022</p>
<p class="MsoNormal">[3]PETSC ERROR: [0]PETSC ERROR: Petsc Release Version 3.14.2, Dec 03, 2020</p>
<p class="MsoNormal">[0]PETSC ERROR: /scratch/07065/tg863649/convection/periodic_test/one.out on a skylake named c402-092.stampede2.tacc.utexas.edu by tg863649 Thu Nov 3 09:53:00 2022</p>
<p class="MsoNormal">[0]PETSC ERROR: Configure options --with-x=0 -with-pic --with-make-np=12 --download-petsc4py=1 --with-python-exec=/opt/apps/intel18/python2/2.7.16/bin/python2 --with-packages-build-dir=/tmp/petsc-3.14/skylake --with-mpi=1 --with-mpi-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mpi/intel64
--with-scalar-type=real --with-shared-libraries=1 --with-precision=double --with-chaco=1 --download-chaco --with-hypre=1 --download-hypre --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-plapack=1 --download-plapack --with-spai=1
--download-spai --with-sundials=1 --download-sundials --with-elemental=1 --download-elemental --with-cxx-dialect=C++11 --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-fftw=1 --with-fftw-dir=/opt/apps/intel18/impi18_0/fftw3/3.3.8
--with-hdf5=1 --with-hdf5-dir=/opt/apps/intel18/impi18_0/phdf5/1.10.4/x86_64 --download-hpddm --download-slepc --with-mumps=1 --download-mumps --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-scalapack=1 --download-scalapack --with-blacs=1
--download-blacs --with-spooles=1 --download-spooles --with-suitesparse=1 --download-suitesparse --with-superlu_dist=1 --download-superlu_dist --with-superlu=1 --download-superlu --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-zoltan=1
--download-zoltan=1 --download-ptscotch=1 --with-debugging=no --LIBS= --with-blaslapack-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl COPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g" FOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2
-g" CXXOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g"</p>
<p class="MsoNormal">Petsc Release Version 3.14.2, Dec 03, 2020</p>
<p class="MsoNormal">[1]PETSC ERROR: /scratch/07065/tg863649/convection/periodic_test/one.out on a skylake named c402-092.stampede2.tacc.utexas.edu by tg863649 Thu Nov 3 09:53:00 2022</p>
<p class="MsoNormal">[1]PETSC ERROR: [0]PETSC ERROR: #1 MatILUFactorSymbolic_SeqAIJ() line 1686 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/impls/aij/seq/aijfact.c</p>
<p class="MsoNormal">Configure options --with-x=0 -with-pic --with-make-np=12 --download-petsc4py=1 --with-python-exec=/opt/apps/intel18/python2/2.7.16/bin/python2 --with-packages-build-dir=/tmp/petsc-3.14/skylake --with-mpi=1 --with-mpi-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mpi/intel64
--with-scalar-type=real --with-shared-libraries=1 --with-precision=double --with-chaco=1 --download-chaco --with-hypre=1 --download-hypre --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-plapack=1 --download-plapack --with-spai=1
--download-spai --with-sundials=1 --download-sundials --with-elemental=1 --download-elemental --with-cxx-dialect=C++11 --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-fftw=1 --with-fftw-dir=/opt/apps/intel18/impi18_0/fftw3/3.3.8
--with-hdf5=1 --with-hdf5-dir=/opt/apps/intel18/impi18_0/phdf5/1.10.4/x86_64 --download-hpddm --download-slepc --with-mumps=1 --download-mumps --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-scalapack=1 --download-scalapack --with-blacs=1
--download-blacs --with-spooles=1 --download-spooles --with-suitesparse=1 --download-suitesparse --with-superlu_dist=1 --download-superlu_dist --with-superlu=1 --download-superlu --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-zoltan=1
--download-zoltan=1 --download-ptscotch=1 --with-debugging=no --LIBS= --with-blaslapack-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl COPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g" FOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2
-g" CXXOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g"</p>
<p class="MsoNormal">[2]PETSC ERROR: #1 MatILUFactorSymbolic_SeqAIJ() line 1686 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/impls/aij/seq/aijfact.c</p>
<p class="MsoNormal">Configure options --with-x=0 -with-pic --with-make-np=12 --download-petsc4py=1 --with-python-exec=/opt/apps/intel18/python2/2.7.16/bin/python2 --with-packages-build-dir=/tmp/petsc-3.14/skylake --with-mpi=1 --with-mpi-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mpi/intel64
--with-scalar-type=real --with-shared-libraries=1 --with-precision=double --with-chaco=1 --download-chaco --with-hypre=1 --download-hypre --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-plapack=1 --download-plapack --with-spai=1
--download-spai --with-sundials=1 --download-sundials --with-elemental=1 --download-elemental --with-cxx-dialect=C++11 --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-fftw=1 --with-fftw-dir=/opt/apps/intel18/impi18_0/fftw3/3.3.8
--with-hdf5=1 --with-hdf5-dir=/opt/apps/intel18/impi18_0/phdf5/1.10.4/x86_64 --download-hpddm --download-slepc --with-mumps=1 --download-mumps --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-scalapack=1 --download-scalapack --with-blacs=1
--download-blacs --with-spooles=1 --download-spooles --with-suitesparse=1 --download-suitesparse --with-superlu_dist=1 --download-superlu_dist --with-superlu=1 --download-superlu --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-zoltan=1
--download-zoltan=1 --download-ptscotch=1 --with-debugging=no --LIBS= --with-blaslapack-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl COPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g" FOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2
-g" CXXOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g"</p>
<p class="MsoNormal">[3]PETSC ERROR: #1 MatILUFactorSymbolic_SeqAIJ() line 1686 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/impls/aij/seq/aijfact.c</p>
<p class="MsoNormal">Configure options --with-x=0 -with-pic --with-make-np=12 --download-petsc4py=1 --with-python-exec=/opt/apps/intel18/python2/2.7.16/bin/python2 --with-packages-build-dir=/tmp/petsc-3.14/skylake --with-mpi=1 --with-mpi-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mpi/intel64
--with-scalar-type=real --with-shared-libraries=1 --with-precision=double --with-chaco=1 --download-chaco --with-hypre=1 --download-hypre --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-plapack=1 --download-plapack --with-spai=1
--download-spai --with-sundials=1 --download-sundials --with-elemental=1 --download-elemental --with-cxx-dialect=C++11 --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-fftw=1 --with-fftw-dir=/opt/apps/intel18/impi18_0/fftw3/3.3.8
--with-hdf5=1 --with-hdf5-dir=/opt/apps/intel18/impi18_0/phdf5/1.10.4/x86_64 --download-hpddm --download-slepc --with-mumps=1 --download-mumps --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-scalapack=1 --download-scalapack --with-blacs=1
--download-blacs --with-spooles=1 --download-spooles --with-suitesparse=1 --download-suitesparse --with-superlu_dist=1 --download-superlu_dist --with-superlu=1 --download-superlu --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-zoltan=1
--download-zoltan=1 --download-ptscotch=1 --with-debugging=no --LIBS= --with-blaslapack-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl COPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g" FOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2
-g" CXXOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g"</p>
<p class="MsoNormal">[1]PETSC ERROR: #1 MatILUFactorSymbolic_SeqAIJ() line 1686 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/impls/aij/seq/aijfact.c</p>
<p class="MsoNormal">[0]PETSC ERROR: #2 MatILUFactorSymbolic() line 6710 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/interface/matrix.c</p>
<p class="MsoNormal">[1]PETSC ERROR: #2 MatILUFactorSymbolic() line 6710 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/interface/matrix.c</p>
<p class="MsoNormal">[1]PETSC ERROR: #3 PCSetUp_ILU() line 141 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/factor/ilu/ilu.c</p>
<p class="MsoNormal">[2]PETSC ERROR: #2 MatILUFactorSymbolic() line 6710 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/interface/matrix.c</p>
<p class="MsoNormal">[2]PETSC ERROR: #3 PCSetUp_ILU() line 141 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/factor/ilu/ilu.c</p>
<p class="MsoNormal">[2]PETSC ERROR: [3]PETSC ERROR: #2 MatILUFactorSymbolic() line 6710 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/interface/matrix.c</p>
<p class="MsoNormal">[3]PETSC ERROR: #3 PCSetUp_ILU() line 141 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/factor/ilu/ilu.c</p>
<p class="MsoNormal">[3]PETSC ERROR: #4 PCSetUp() line 1009 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/interface/precon.c</p>
<p class="MsoNormal">[3]PETSC ERROR: [0]PETSC ERROR: #3 PCSetUp_ILU() line 141 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/factor/ilu/ilu.c</p>
<p class="MsoNormal">[0]PETSC ERROR: #4 PCSetUp() line 1009 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/interface/precon.c</p>
<p class="MsoNormal">[0]PETSC ERROR: #5 KSPSetUp() line 406 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[1]PETSC ERROR: #4 PCSetUp() line 1009 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/interface/precon.c</p>
<p class="MsoNormal">[1]PETSC ERROR: #5 KSPSetUp() line 406 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">#4 PCSetUp() line 1009 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/interface/precon.c</p>
<p class="MsoNormal">[2]PETSC ERROR: #5 KSPSetUp() line 406 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">#5 KSPSetUp() line 406 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[0]PETSC ERROR: [2]PETSC ERROR: #6 KSPSolve_Private() line 658 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[2]PETSC ERROR: [3]PETSC ERROR: #6 KSPSolve_Private() line 658 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[3]PETSC ERROR: #7 KSPSolve() line 889 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">#6 KSPSolve_Private() line 658 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[0]PETSC ERROR: #7 KSPSolve() line 889 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[1]PETSC ERROR: #6 KSPSolve_Private() line 658 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[1]PETSC ERROR: #7 KSPSolve() line 889 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">#7 KSPSolve() line 889 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[1]PETSC ERROR: [2]PETSC ERROR: #8 DMDAGetFaceInterpolation() line 493 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/wb/wb.c</p>
<p class="MsoNormal">[2]PETSC ERROR: [0]PETSC ERROR: #8 DMDAGetFaceInterpolation() line 493 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/wb/wb.c</p>
<p class="MsoNormal">#8 DMDAGetFaceInterpolation() line 493 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/wb/wb.c</p>
<p class="MsoNormal">[1]PETSC ERROR: #9 PCSetUp_Exotic() line 667 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/wb/wb.c</p>
<p class="MsoNormal">[1]PETSC ERROR: #10 PCSetUp() line 1009 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/interface/precon.c</p>
<p class="MsoNormal">#9 PCSetUp_Exotic() line 667 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/wb/wb.c</p>
<p class="MsoNormal">[2]PETSC ERROR: #10 PCSetUp() line 1009 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/interface/precon.c</p>
<p class="MsoNormal">[2]PETSC ERROR: #11 KSPSetUp() line 406 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[0]PETSC ERROR: #9 PCSetUp_Exotic() line 667 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/wb/wb.c</p>
<p class="MsoNormal">[0]PETSC ERROR: #10 PCSetUp() line 1009 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/interface/precon.c</p>
<p class="MsoNormal">[0]PETSC ERROR: [1]PETSC ERROR: #11 KSPSetUp() line 406 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[1]PETSC ERROR: #12 KSPSolve_Private() line 658 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[1]PETSC ERROR: #13 KSPSolve() line 889 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[2]PETSC ERROR: #12 KSPSolve_Private() line 658 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[2]PETSC ERROR: #13 KSPSolve() line 889 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[3]PETSC ERROR: #8 DMDAGetFaceInterpolation() line 493 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/wb/wb.c</p>
<p class="MsoNormal">[3]PETSC ERROR: #9 PCSetUp_Exotic() line 667 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/impls/wb/wb.c</p>
<p class="MsoNormal">[3]PETSC ERROR: #10 PCSetUp() line 1009 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/pc/interface/precon.c</p>
<p class="MsoNormal">[3]PETSC ERROR: #11 KSPSetUp() line 406 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[3]PETSC ERROR: #12 KSPSolve_Private() line 658 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">#11 KSPSetUp() line 406 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[0]PETSC ERROR: #12 KSPSolve_Private() line 658 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[0]PETSC ERROR: #13 KSPSolve() line 889 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[3]PETSC ERROR: #13 KSPSolve() line 889 in /home1/apps/intel18/impi18_0/petsc/3.14/src/ksp/ksp/interface/itfunc.c</p>
<p class="MsoNormal">[1]PETSC ERROR: [0]PETSC ERROR: #14 main() line 51 in /scratch/07065/tg863649/convection/periodic_test/one.c</p>
<p class="MsoNormal">#14 main() line 51 in /scratch/07065/tg863649/convection/periodic_test/one.c</p>
<p class="MsoNormal">[1]PETSC ERROR: PETSc Option Table entries:</p>
<p class="MsoNormal">[1]PETSC ERROR: -ksp_monitor_short</p>
<p class="MsoNormal">[2]PETSC ERROR: #14 main() line 51 in /scratch/07065/tg863649/convection/periodic_test/one.c</p>
<p class="MsoNormal">[2]PETSC ERROR: PETSc Option Table entries:</p>
<p class="MsoNormal">[2]PETSC ERROR: -ksp_monitor_short</p>
<p class="MsoNormal">[2]PETSC ERROR: [0]PETSC ERROR: PETSc Option Table entries:</p>
<p class="MsoNormal">[0]PETSC ERROR: -ksp_monitor_short</p>
<p class="MsoNormal">[0]PETSC ERROR: -ksp_type fgmres</p>
<p class="MsoNormal">[0]PETSC ERROR: -mg_levels_ksp_max_it 1</p>
<p class="MsoNormal">[0]PETSC ERROR: -mg_levels_ksp_type gmres</p>
<p class="MsoNormal">[0]PETSC ERROR: -mg_levels_pc_type bjacobi</p>
<p class="MsoNormal">[1]PETSC ERROR: -ksp_type fgmres</p>
<p class="MsoNormal">[1]PETSC ERROR: -mg_levels_ksp_max_it 1</p>
<p class="MsoNormal">[1]PETSC ERROR: -mg_levels_ksp_type gmres</p>
<p class="MsoNormal">[1]PETSC ERROR: -mg_levels_pc_type bjacobi</p>
<p class="MsoNormal">[1]PETSC ERROR: -pc_type exotic</p>
<p class="MsoNormal">[1]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov----------</p>
<p class="MsoNormal">-ksp_type fgmres</p>
<p class="MsoNormal">[2]PETSC ERROR: -mg_levels_ksp_max_it 1</p>
<p class="MsoNormal">[2]PETSC ERROR: -mg_levels_ksp_type gmres</p>
<p class="MsoNormal">[2]PETSC ERROR: -mg_levels_pc_type bjacobi</p>
<p class="MsoNormal">[2]PETSC ERROR: -pc_type exotic</p>
<p class="MsoNormal">[2]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov----------</p>
<p class="MsoNormal">[3]PETSC ERROR: #14 main() line 51 in /scratch/07065/tg863649/convection/periodic_test/one.c</p>
<p class="MsoNormal">[3]PETSC ERROR: PETSc Option Table entries:</p>
<p class="MsoNormal">[3]PETSC ERROR: -ksp_monitor_short</p>
<p class="MsoNormal">[3]PETSC ERROR: -ksp_type fgmres</p>
<p class="MsoNormal">[3]PETSC ERROR: -mg_levels_ksp_max_it 1</p>
<p class="MsoNormal">[3]PETSC ERROR: -mg_levels_ksp_type gmres</p>
<p class="MsoNormal">[3]PETSC ERROR: -mg_levels_pc_type bjacobi</p>
<p class="MsoNormal">[3]PETSC ERROR: -pc_type exotic</p>
<p class="MsoNormal">[3]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov----------</p>
<p class="MsoNormal">[0]PETSC ERROR: -pc_type exotic</p>
<p class="MsoNormal">[0]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov----------</p>
<p class="MsoNormal">application called MPI_Abort(MPI_COMM_SELF, 51073) - process 0</p>
<p class="MsoNormal">application called MPI_Abort(MPI_COMM_SELF, 51073) - process 0</p>
<p class="MsoNormal">application called MPI_Abort(MPI_COMM_SELF, 51073) - process 0</p>
<p class="MsoNormal">application called MPI_Abort(MPI_COMM_SELF, 51073) - process 0</p>
<p class="MsoNormal">TACC: MPI job exited with code: 129</p>
<p class="MsoNormal">TACC: Shutdown complete. Exiting.</p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Sent from <a href="https://go.microsoft.com/fwlink/?LinkId=550986">
Mail</a> for Windows</p>
<p class="MsoNormal"><o:p> </o:p></p>
<div style="mso-element:para-border-div;border:none;border-top:solid #E1E1E1 1.0pt;padding:3.0pt 0in 0in 0in">
<p class="MsoNormal" style="border:none;padding:0in"><b>From: </b><a href="mailto:bsmith@petsc.dev">Barry Smith</a><br>
<b>Sent: </b>Tuesday, October 25, 2022 7:24 PM<br>
<b>To: </b><a href="mailto:kavousi@mines.edu">Sepideh Kavousi</a><br>
<b>Cc: </b><a href="mailto:petsc-users@mcs.anl.gov">petsc-users@mcs.anl.gov</a><br>
<b>Subject: </b>Re: [External] [petsc-users] Periodic boundary condition</p>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<p class="MsoNormal"> Sorry I was not clear, at this point you need to type c for continue and then when it crashes in the debugger type bt<o:p></o:p></p>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal"> Barry<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
<div>
<p class="MsoNormal"><br>
<br>
<o:p></o:p></p>
<blockquote style="margin-top:5.0pt;margin-bottom:5.0pt">
<div>
<p class="MsoNormal">On Oct 25, 2022, at 6:37 PM, Sepideh Kavousi <<a href="mailto:kavousi@mines.edu">kavousi@mines.edu</a>> wrote:<o:p></o:p></p>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
<div>
<div>
<p class="MsoNormal">Hello Barry,<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">When I ran with , the error is about PetscInitialize line (Line 333). When I write bt multiple times, it just continues referring to this line.<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"> <o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">#0 0x00002b701cfed9fd in nanosleep () from /lib64/libc.so.6<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">#1 0x00002b701cfed894 in sleep () from /lib64/libc.so.6<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">#2 0x00002b70035fb4ae in PetscSleep (s=1) at /home1/apps/intel18/impi18_0/petsc/3.14/src/sys/utils/psleep.c:46<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">#3 0x00002b700364b8bb in PetscAttachDebugger () at /home1/apps/intel18/impi18_0/petsc/3.14/src/sys/error/adebug.c:405<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">#4 0x00002b700366cfcd in PetscOptionsCheckInitial_Private (help=0x7ffec24c7940 "\t") at /home1/apps/intel18/impi18_0/petsc/3.14/src/sys/objects/init.c:608<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">#5 0x00002b7003674cd6 in PetscInitialize (argc=0x7ffec24c7940, args=0x7ffec24c7940, file=0x0, help=0xffffffffffffffff <Address 0xffffffffffffffff out of bounds>)<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"> at /home1/apps/intel18/impi18_0/petsc/3.14/src/sys/objects/pinit.c:1025<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">#6 0x00000000004021ce in main (argc=24, argv=0x7ffec24d14e8) at /scratch/07065/tg863649/convection/test-a9-3-options_small_MAC_pressure_old/one.c:333<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"> <o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">Best,<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">Sepideh<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">Sent from<span class="apple-converted-space"> </span><a href="https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgo.microsoft.com%2Ffwlink%2F%3FLinkId%3D550986&data=05%7C01%7Ckavousi%40mines.edu%7C69fba9c581cd4ac9adae08dab6e012ed%7C997209e009b346239a4d76afa44a675c%7C0%7C0%7C638023370775017058%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=yuO73mNlFQYh9W95ovJCwG1WueLQNwySyvFCu4xtzpg%3D&reserved=0"><span style="color:purple">Mail</span></a><span class="apple-converted-space"> </span>for
Windows<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"> <o:p></o:p></p>
</div>
<div style="border:none;border-top:solid #E1E1E1 1.0pt;padding:3.0pt 0in 0in 0in">
<div>
<p class="MsoNormal"><b>From:<span class="apple-converted-space"> </span></b><a href="mailto:bsmith@petsc.dev"><span style="color:purple">Barry Smith</span></a><br>
<b>Sent:<span class="apple-converted-space"> </span></b>Friday, October 21, 2022 10:54 AM<br>
<b>To:<span class="apple-converted-space"> </span></b><a href="mailto:kavousi@mines.edu"><span style="color:purple">Sepideh Kavousi</span></a><br>
<b>Cc:<span class="apple-converted-space"> </span></b><a href="mailto:petsc-users@mcs.anl.gov"><span style="color:purple">petsc-users@mcs.anl.gov</span></a><br>
<b>Subject:<span class="apple-converted-space"> </span></b>Re: [External] [petsc-users] Periodic boundary condition<o:p></o:p></p>
</div>
</div>
<div>
<p class="MsoNormal"> <o:p></o:p></p>
</div>
<div>
<div>
<p class="MsoNormal"> <o:p></o:p></p>
</div>
</div>
<div>
<p class="MsoNormal"> The problem with the output below is it is not giving a clear indication where the crash occurred.<o:p></o:p></p>
</div>
<div>
<div>
<p class="MsoNormal"> <o:p></o:p></p>
</div>
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<div>
<div>
<p class="MsoNormal"> #1 User provided function() line 0 in unknown file<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal"> <o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal"> <o:p></o:p></p>
</div>
<div>
<div>
<p class="MsoNormal"> Run with the exact same options but also -start_in_debugger noxterm It should then crash in the debugger and you can type bt to see the backtrace of where it crashed, send that output.<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal"> <o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal"> Barry<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal"> <o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal"> Background: MatFDColoringSetUpBlocked_AIJ_Private() allocates the space that is used when evaluating the function multiple times to get the Jacobian entries. If the FormFunction writes into incorrect locations, then it will corrupt this
memory that was allocated in MatFDColoringSetUpBlocked_AIJ_Private() . It does not mean necessarily that there is anything wrong in MatFDColoringSetUpBlocked_AIJ_Private() <o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal"><br>
<br>
<br>
<o:p></o:p></p>
</div>
<blockquote style="margin-top:5.0pt;margin-bottom:5.0pt">
<div>
<div>
<p class="MsoNormal">On Oct 21, 2022, at 12:32 AM, Sepideh Kavousi <<a href="mailto:kavousi@mines.edu"><span style="color:purple">kavousi@mines.edu</span></a>> wrote:<o:p></o:p></p>
</div>
</div>
<div>
<p class="MsoNormal"> <o:p></o:p></p>
</div>
<div>
<div>
<div>
<p class="MsoNormal">Barry,<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">I ran the code with -malloc_debug and added CHKMEMQ for all the lines inside formfunction. Following is the detail of error.<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">Best,<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">Sepideh<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal"> <o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">[0]PETSC ERROR: ------------------------------------------------------------------------<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">[0]PETSC ERROR: or see<span class="apple-converted-space"> </span><a href="https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.mcs.anl.gov%2Fpetsc%2Fdocumentation%2Ffaq.html%23valgrind&data=05%7C01%7Ckavousi%40mines.edu%7C69fba9c581cd4ac9adae08dab6e012ed%7C997209e009b346239a4d76afa44a675c%7C0%7C0%7C638023370775173292%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=wkYcffHdhDe8THCP%2Fk6%2FyUO0YXOnILQmsGutldFIk%2BI%3D&reserved=0"><span style="color:purple">https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind</span></a><o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">[0]PETSC ERROR: or try<span class="apple-converted-space"> </span><a href="https://nam04.safelinks.protection.outlook.com/?url=http%3A%2F%2Fvalgrind.org%2F&data=05%7C01%7Ckavousi%40mines.edu%7C69fba9c581cd4ac9adae08dab6e012ed%7C997209e009b346239a4d76afa44a675c%7C0%7C0%7C638023370775173292%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=PYWGQpNE8LOn5NSnN%2BlFzp8rLmoIdaLkcxvwsNa%2F9xo%3D&reserved=0"><span style="color:purple">http://valgrind.org</span></a><span class="apple-converted-space"> </span>on
GNU/linux and Apple Mac OS X to find memory corruption errors<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">[0]PETSC ERROR: to get more information on the crash.<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">[0]PETSC ERROR: PetscMallocValidate: error detected at PetscError() line 401 in /home1/apps/intel18/impi18_0/petsc/3.14/src/sys/error/err.c<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">[0]PETSC ERROR: Memory [id=0(73960000)] at address 0x2b5aed6ab050 is corrupted (probably write past end of array)<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">[0]PETSC ERROR: Memory originally allocated in MatFDColoringSetUpBlocked_AIJ_Private() line 125 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/impls/aij/seq/fdaij.c<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">[0]PETSC ERROR: Signal received<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">[0]PETSC ERROR: See<span class="apple-converted-space"> </span><a href="https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.mcs.anl.gov%2Fpetsc%2Fdocumentation%2Ffaq.html&data=05%7C01%7Ckavousi%40mines.edu%7C69fba9c581cd4ac9adae08dab6e012ed%7C997209e009b346239a4d76afa44a675c%7C0%7C0%7C638023370775173292%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=FBQNgDbFWKb1Qa9cwajS%2B0JNB5PfIqrvbRIFd%2FI8x3I%3D&reserved=0"><span style="color:purple">https://www.mcs.anl.gov/petsc/documentation/faq.html</span></a><span class="apple-converted-space"> </span>for
trouble shooting.<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">[0]PETSC ERROR: Petsc Release Version 3.14.2, Dec 03, 2020<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">[0]PETSC ERROR: ./one.out on a skylake named<span class="apple-converted-space"> </span><a href="https://nam04.safelinks.protection.outlook.com/?url=http%3A%2F%2Fc415-063.stampede2.tacc.utexas.edu%2F&data=05%7C01%7Ckavousi%40mines.edu%7C69fba9c581cd4ac9adae08dab6e012ed%7C997209e009b346239a4d76afa44a675c%7C0%7C0%7C638023370775173292%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=JGr48qlrEtYEaC5NzX9LtVKkHdnPNDK8AbN6pbKUJs0%3D&reserved=0"><span style="color:purple">c415-063.stampede2.tacc.utexas.edu</span></a><span class="apple-converted-space"> </span>by
tg863649 Thu Oct 20 23:30:05 2022<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">[0]PETSC ERROR: Configure options --with-x=0 -with-pic --with-make-np=12 --download-petsc4py=1 --with-python-exec=/opt/apps/intel18/python2/2.7.16/bin/python2 --with-packages-build-dir=/tmp/petsc-3.14/skylake --with-mpi=1 --with-mpi-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mpi/intel64
--with-scalar-type=real --with-shared-libraries=1 --with-precision=double --with-chaco=1 --download-chaco --with-hypre=1 --download-hypre --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-plapack=1 --download-plapack --with-spai=1
--download-spai --with-sundials=1 --download-sundials --with-elemental=1 --download-elemental --with-cxx-dialect=C++11 --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-fftw=1 --with-fftw-dir=/opt/apps/intel18/impi18_0/fftw3/3.3.8
--with-hdf5=1 --with-hdf5-dir=/opt/apps/intel18/impi18_0/phdf5/1.10.4/x86_64 --download-hpddm --download-slepc --with-mumps=1 --download-mumps --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-scalapack=1 --download-scalapack --with-blacs=1
--download-blacs --with-spooles=1 --download-spooles --with-suitesparse=1 --download-suitesparse --with-superlu_dist=1 --download-superlu_dist --with-superlu=1 --download-superlu --with-parmetis=1 --download-parmetis --with-metis=1 --download-metis --with-zoltan=1
--download-zoltan=1 --download-ptscotch=1 --with-debugging=no --LIBS= --with-blaslapack-dir=/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl COPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g" FOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2
-g" CXXOPTFLAGS="-xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -g"<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal">[0]PETSC ERROR: #1 User provided function() line 0 in unknown file<o:p></o:p></p>
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<p class="MsoNormal">[0]PETSC ERROR: Checking the memory for corruption.<o:p></o:p></p>
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<p class="MsoNormal">[0]PETSC ERROR: PetscMallocValidate: error detected at PetscSignalHandlerDefault() line 170 in /home1/apps/intel18/impi18_0/petsc/3.14/src/sys/error/signal.c<o:p></o:p></p>
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<p class="MsoNormal">[0]PETSC ERROR: Memory [id=0(73960000)] at address 0x2b5aed6ab050 is corrupted (probably write past end of array)<o:p></o:p></p>
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<p class="MsoNormal">[0]PETSC ERROR: Memory originally allocated in MatFDColoringSetUpBlocked_AIJ_Private() line 125 in /home1/apps/intel18/impi18_0/petsc/3.14/src/mat/impls/aij/seq/fdaij.c<o:p></o:p></p>
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<p class="MsoNormal">application called MPI_Abort(MPI_COMM_WORLD, 50176059) - process 0<o:p></o:p></p>
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<p class="MsoNormal">[unset]: readline failed<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Sent from<span class="apple-converted-space"> </span><a href="https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgo.microsoft.com%2Ffwlink%2F%3FLinkId%3D550986&data=05%7C01%7Ckavousi%40mines.edu%7C69fba9c581cd4ac9adae08dab6e012ed%7C997209e009b346239a4d76afa44a675c%7C0%7C0%7C638023370775173292%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=3AHsDWTVLXZcgkPccM9Xwmq6a98y2zM3b1fS8FxwTm4%3D&reserved=0"><span style="color:purple">Mail</span></a><span class="apple-converted-space"> </span>for
Windows<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<div style="border:none;border-top:solid #E1E1E1 1.0pt;padding:3.0pt 0in 0in 0in">
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<p class="MsoNormal"><b>From:<span class="apple-converted-space"> </span></b><a href="mailto:bsmith@petsc.dev"><span style="color:purple">Barry Smith</span></a><br>
<b>Sent:<span class="apple-converted-space"> </span></b>Thursday, October 20, 2022 10:27 PM<br>
<b>To:<span class="apple-converted-space"> </span></b><a href="mailto:kavousi@mines.edu"><span style="color:purple">Sepideh Kavousi</span></a><br>
<b>Cc:<span class="apple-converted-space"> </span></b><a href="mailto:petsc-users@mcs.anl.gov"><span style="color:purple">petsc-users@mcs.anl.gov</span></a><br>
<b>Subject:<span class="apple-converted-space"> </span></b>[External] Re: [petsc-users] Periodic boundary condition<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"> Some of the valgrind information does not appear to make sense<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">PetscMemcpy() is not calling SNESSolve() so I suspect there must be some serious corruption of something to this impossible stack trace<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x6FD160F: SNESSolve (snes.c:4569)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x711917E: PetscMemcpy (bdf.c:223)<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">From<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
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<p class="MsoNormal">==236074== at 0x5F10977: MatFDColoringSetUpBlocked_AIJ_Private (fdaij.c:146)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x5F10977: MatFDColoringSetUp_SeqXAIJ.A (fdaij.c:284)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x585892A: MatFDColoringSetUp (fdmatrix.c:242)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x6FE5037: SNESComputeJacobianDefaultColor (snesj2.c:79)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x6FC8E4E: SNESComputeJacobian (snes.c:2717)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x70236E7: SNESSolve_NEWTONTR (tr.c:324)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x6FD160F: SNESSolve (snes.c:4569)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x711917E: PetscMemcpy (bdf.c:223)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x711917E: PetscCitationsRegister (petscsys.h:2689)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x711917E: TSStep_BDF.A (bdf.c:265)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x70C363A: TSStep (ts.c:3757)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x70C1999: TSSolve (ts.c:4154)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x402594: main (one.c:391)<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">I suggest you run with -malloc_debug instead of valgrind and see if any errors are reported. If so you can add the macro CHKMEMQ; inside your function evaluation where you write to memory to see if anything is writing to the wrong location.
For example wherever you assign aF such as<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">aF[j][i].vx=(x3+x4+x5+x6+x7+x8+x9-x1-x2)*user->hx;<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">this can help you determine the exact line number where you are writing to the wrong location and determine what might be the cause.<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"><br>
<br>
<br>
<br>
<o:p></o:p></p>
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<blockquote style="margin-top:5.0pt;margin-bottom:5.0pt">
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<p class="MsoNormal">On Oct 20, 2022, at 6:45 PM, Sepideh Kavousi <<a href="mailto:kavousi@mines.edu"><span style="color:purple">kavousi@mines.edu</span></a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Hello,<o:p></o:p></p>
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<p class="MsoNormal">I want to solve my 5 PDEs based on finite difference method using periodic BC in x-direction and non-periodic in y-direction but I run into error (Segmentation Violation, probably memory access out of range).<o:p></o:p></p>
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<p class="MsoNormal">For this, I discretize my equation in FormFunction function. My PDE discretization in (i,j) node needs data on (i+1,j), (i+2,j), (i-1,j), (i-2,j), (i,j+1), (i,j+2), (i,j-1), (i,j-2) points.<o:p></o:p></p>
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<p class="MsoNormal">In my previous codes that the x-direction was non-periodic (no flux) boundary condition, I:<o:p></o:p></p>
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<p class="MsoNormal" style="text-indent:-.5in">i)<span style="font-size:7.0pt;font-family:"Times New Roman",serif"> <span class="apple-converted-space"> </span></span>implemented the no flux BC for i=0 and i=Nx-1,<o:p></o:p></p>
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<p class="MsoNormal" style="text-indent:-.5in">ii)<span style="font-size:7.0pt;font-family:"Times New Roman",serif"> <span class="apple-converted-space"> </span></span>set i+2= Nx-1 in discretizing (Nx-2,j) and i+2= 0 in discretizing (1,j)<o:p></o:p></p>
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<p class="MsoNormal" style="text-indent:-.5in">iii)<span style="font-size:7.0pt;font-family:"Times New Roman",serif"> <span class="apple-converted-space"> </span></span>discretized my equation for i=1..Nx-2.<o:p></o:p></p>
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<p class="MsoNormal">I am not sure how I should do the periodic BC. From the following discussions (<a href="https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.mcs.anl.gov%2Fpipermail%2Fpetsc-users%2F2012-May%2F013476.html&data=05%7C01%7Ckavousi%40mines.edu%7C69fba9c581cd4ac9adae08dab6e012ed%7C997209e009b346239a4d76afa44a675c%7C0%7C0%7C638023370775173292%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=b8Fmx5UHkTufu0S8IXqMvwObom2wGbMQd0TXySv%2FV2E%3D&reserved=0"><span style="color:purple">https://lists.mcs.anl.gov/pipermail/petsc-users/2012-May/013476.html</span></a><span class="apple-converted-space"> </span> and<a href="https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.mcs.anl.gov%2Fpipermail%2Fpetsc-users%2F2016-May%2F029273.html&data=05%7C01%7Ckavousi%40mines.edu%7C69fba9c581cd4ac9adae08dab6e012ed%7C997209e009b346239a4d76afa44a675c%7C0%7C0%7C638023370775173292%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=%2B%2F9VsgTbaXPiqR8twtCtpSX7EEKpmVdHrm6tKI6HqjI%3D&reserved=0"><span style="color:purple">https://lists.mcs.anl.gov/pipermail/petsc-users/2016-May/029273.html</span></a>),
I guess I should not do step (i) (stated above) for the x-boundaries and just do step (iii) for i=0..Nx-1. If I just focus on solving 2 of the PDEs which does need data on (i+2,j), (i-2,j), (i,j+2), (i,j-2) points for discretizing equation in (i,j) node, I
still run into error:<o:p></o:p></p>
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<p class="MsoNormal">Running with Valgrind (just 1 processor) gave the following file. I did not find any information which gives me hint on the error source.<o:p></o:p></p>
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<p class="MsoNormal">Can you please help me to find the error?<span class="apple-converted-space"> </span><o:p></o:p></p>
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<p class="MsoNormal">Best,<o:p></o:p></p>
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<p class="MsoNormal">Sepideh<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
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<p class="MsoNormal">==236074== at 0x4C29E39: malloc (vg_replace_malloc.c:309)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x1B79E59B: MPID_Init (mpid_init.c:1649)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
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<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
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<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
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<p class="MsoNormal">==236074== at 0x2183B805: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x218323C1: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x218341C7: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x400F9C2: _dl_init (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x401459D: dl_open_worker (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x4013B8A: _dl_open (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x1AEA4FAA: dlopen_doit (in /usr/lib64/libdl-2.17.so)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x1AEA55AC: _dlerror_run (in /usr/lib64/libdl-2.17.so)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x1AEA5040: dlopen@@GLIBC_2.2.5 (in /usr/lib64/libdl-2.17.so)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x1B8198DC: MPID_nem_ofi_init (ofi_init.c:158)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
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<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
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<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
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<div>
<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x2183B810: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x218323C1: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x218341C7: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x400F9C2: _dl_init (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x401459D: dl_open_worker (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x4013B8A: _dl_open (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1AEA4FAA: dlopen_doit (in /usr/lib64/libdl-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1AEA55AC: _dlerror_run (in /usr/lib64/libdl-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1AEA5040: dlopen@@GLIBC_2.2.5 (in /usr/lib64/libdl-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B8198DC: MPID_nem_ofi_init (ofi_init.c:158)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x218323C8: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x218341C7: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x400F9C2: _dl_init (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x401459D: dl_open_worker (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x4013B8A: _dl_open (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1AEA4FAA: dlopen_doit (in /usr/lib64/libdl-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1AEA55AC: _dlerror_run (in /usr/lib64/libdl-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1AEA5040: dlopen@@GLIBC_2.2.5 (in /usr/lib64/libdl-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B8198DC: MPID_nem_ofi_init (ofi_init.c:158)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Use of uninitialised value of size 8<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x218323CF: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x218341C7: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x400F9C2: _dl_init (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x401459D: dl_open_worker (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x4013B8A: _dl_open (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1AEA4FAA: dlopen_doit (in /usr/lib64/libdl-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1AEA55AC: _dlerror_run (in /usr/lib64/libdl-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1AEA5040: dlopen@@GLIBC_2.2.5 (in /usr/lib64/libdl-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B8198DC: MPID_nem_ofi_init (ofi_init.c:158)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Use of uninitialised value of size 8<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x218323E5: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x218341C7: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x400F9C2: _dl_init (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x401459D: dl_open_worker (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x4013B8A: _dl_open (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1AEA4FAA: dlopen_doit (in /usr/lib64/libdl-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x400F7D3: _dl_catch_error (in /usr/lib64/ld-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1AEA55AC: _dlerror_run (in /usr/lib64/libdl-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1AEA5040: dlopen@@GLIBC_2.2.5 (in /usr/lib64/libdl-2.17.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B8198DC: MPID_nem_ofi_init (ofi_init.c:158)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x2183B805: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x218323C1: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x218343EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x2180E4F3: psm2_init (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x2112D7E6: psmx2_getinfo (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x210AC753: fi_getinfo@@FABRIC_1.2 (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B819AB7: MPID_nem_ofi_init (ofi_init.c:245)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x2183B810: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x218323C1: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x218343EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x2180E4F3: psm2_init (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x2112D7E6: psmx2_getinfo (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x210AC753: fi_getinfo@@FABRIC_1.2 (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B819AB7: MPID_nem_ofi_init (ofi_init.c:245)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x218323C8: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x218343EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x2180E4F3: psm2_init (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x2112D7E6: psmx2_getinfo (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x210AC753: fi_getinfo@@FABRIC_1.2 (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B819AB7: MPID_nem_ofi_init (ofi_init.c:245)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Use of uninitialised value of size 8<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x218323CF: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x218343EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x2180E4F3: psm2_init (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x2112D7E6: psmx2_getinfo (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x210AC753: fi_getinfo@@FABRIC_1.2 (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B819AB7: MPID_nem_ofi_init (ofi_init.c:245)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Use of uninitialised value of size 8<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x218323E5: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x218343EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x2180E4F3: psm2_init (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x2112D7E6: psmx2_getinfo (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x210AC753: fi_getinfo@@FABRIC_1.2 (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B819AB7: MPID_nem_ofi_init (ofi_init.c:245)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x2183B69A: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x218371EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x21837077: hfi_get_port_lid (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x21836F9A: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x21834872: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x217F7F5D: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x217FDC29: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x217FCA91: psm2_ep_open (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x2112FB19: psmx2_trx_ctxt_alloc (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x21138089: psmx2_ep_open (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B81A6A1: fi_endpoint (fi_endpoint.h:155)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B81A6A1: MPID_nem_ofi_init (ofi_init.c:377)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x2183B7B8: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x218371EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x21837077: hfi_get_port_lid (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x21836F9A: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x21834872: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x217F7F5D: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x217FDC29: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x217FCA91: psm2_ep_open (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x2112FB19: psmx2_trx_ctxt_alloc (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x21138089: psmx2_ep_open (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B81A6A1: fi_endpoint (fi_endpoint.h:155)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B81A6A1: MPID_nem_ofi_init (ofi_init.c:377)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x2183B69A: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x218371EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x21837077: hfi_get_port_lid (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x217F88C8: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x217FDC29: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x217FCA91: psm2_ep_open (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x2112FB19: psmx2_trx_ctxt_alloc (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x21138089: psmx2_ep_open (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B81A6A1: fi_endpoint (fi_endpoint.h:155)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B81A6A1: MPID_nem_ofi_init (ofi_init.c:377)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x2183B7B8: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x218371EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x21837077: hfi_get_port_lid (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x217F88C8: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x217FDC29: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x217FCA91: psm2_ep_open (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x2112FB19: psmx2_trx_ctxt_alloc (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x21138089: psmx2_ep_open (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B81A6A1: fi_endpoint (fi_endpoint.h:155)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B81A6A1: MPID_nem_ofi_init (ofi_init.c:377)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x2183B69A: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x218371EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x21837077: hfi_get_port_lid (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x217F916B: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x217FDC29: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x217FCA91: psm2_ep_open (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x2112FB19: psmx2_trx_ctxt_alloc (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x21138089: psmx2_ep_open (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B81A6A1: fi_endpoint (fi_endpoint.h:155)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B81A6A1: MPID_nem_ofi_init (ofi_init.c:377)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x2183B7B8: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x218371EC: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x21837077: hfi_get_port_lid (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x217F916B: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x217FDC29: ??? (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x217FCA91: psm2_ep_open (in /usr/lib64/libpsm2.so.2.2)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x2112FB19: psmx2_trx_ctxt_alloc (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x21138089: psmx2_ep_open (in /opt/apps/libfabric/1.7.0/lib/libfabric.so.1.10.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B81A6A1: fi_endpoint (fi_endpoint.h:155)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B81A6A1: MPID_nem_ofi_init (ofi_init.c:377)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B5C55: ??? (mpid_nem_init.c:231)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B3F92: MPID_nem_init_ckpt (mpid_nem_init.c:954)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B580640: MPIDI_CH3_Init (ch3_init.c:125)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x1B1DA260: __I_MPI___intel_sse2_strncmp (in /opt/intel/compilers_and_libraries_2018.2.199/linux/mpi/intel64/lib/libmpifort.so.12.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B8CFBA1: ??? (simple_pmi.c:2376)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B8CBDAD: PMIi_InitIfSingleton (simple_pmi.c:2883)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B8CBDAD: iPMI_KVS_Get (simple_pmi.c:751)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7CCC1E: ??? (mpidi_pg.c:949)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B817EAA: MPID_nem_ofi_post_init (ofi_init.c:1736)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B3575: MPID_nem_init_post (mpid_nem_init.c:1421)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B5806E3: MPIDI_CH3_Init (ch3_init.c:146)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x1B1DA383: __I_MPI___intel_sse2_strncmp (in /opt/intel/compilers_and_libraries_2018.2.199/linux/mpi/intel64/lib/libmpifort.so.12.0)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B8CFBA1: ??? (simple_pmi.c:2376)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B8CBDAD: PMIi_InitIfSingleton (simple_pmi.c:2883)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B8CBDAD: iPMI_KVS_Get (simple_pmi.c:751)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7CCC1E: ??? (mpidi_pg.c:949)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B817EAA: MPID_nem_ofi_post_init (ofi_init.c:1736)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B7B3575: MPID_nem_init_post (mpid_nem_init.c:1421)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B5806E3: MPIDI_CH3_Init (ch3_init.c:146)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B79F02D: MPID_Init (mpid_init.c:1857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73FAEA: MPIR_Init_thread (initthread.c:717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x1B73D795: PMPI_Init_thread (initthread.c:1061)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5264A94: PetscInitialize (pinit.c:907)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40219D: main (one.c:335)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x1E48032E: __intel_sse4_strcpy (in /opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin/libirc.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x51FD8BE: PetscStrcpy (str.c:354)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x51FD7A3: PetscStrallocpy (str.c:188)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x52A39CE: PetscEventRegLogRegister (eventlog.c:313)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x527D89A: PetscLogEventRegister (plog.c:693)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6A56A20: PCBDDCInitializePackage (bddc.c:3115)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6E1A515: PCInitializePackage (dlregisksp.c:59)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6DB1A86: PCCreate (precon.c:382)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6E05167: KSPGetPC (itfunc.c:1837)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6E0FC5C: KSPSetDM (iterativ.c:1150)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FDD27B: SNESSetDM (snes.c:5402)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70B85F7: TSGetSNES (ts.c:2914)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70BE430: TSSetDM (ts.c:4949)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x402496: main (one.c:378)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x1E4782BA: __intel_ssse3_strncpy (in /opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin/libirc.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x51FFD24: PetscStrncpy (str.c:392)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x51FEB03: PetscStrreplace (str.c:1142)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x52C9958: PetscViewerFileSetName (filev.c:659)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x52B743B: PetscViewerVTKOpen (vtkv.c:279)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70C76E6: TSMonitorSolutionVTK (ts.c:5580)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40313C: FormFunction (one.c:120)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x7066531: TSComputeIFunction_DMDA (dmdats.c:82)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70BA5EF: TSComputeIFunction (ts.c:857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711E2DC: SNESTSFormFunction_BDF (bdf.c:368)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70C6E46: SNESTSFormFunction (ts.c:5014)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FDC8A6: SNESComputeFunction (snes.c:2383)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x7023556: SNESSolve_NEWTONTR (tr.c:297)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FD160F: SNESSolve (snes.c:4569)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: PetscMemcpy (bdf.c:223)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: PetscCitationsRegister (petscsys.h:2689)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: TSStep_BDF.A (bdf.c:265)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70C363A: TSStep (ts.c:3757)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70C1999: TSSolve (ts.c:4154)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x402594: main (one.c:391)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x1E4782BA: __intel_ssse3_strncpy (in /opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin/libirc.so)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x51FFD24: PetscStrncpy (str.c:392)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x51FEB03: PetscStrreplace (str.c:1142)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5224E4B: PetscFOpen (mpiuopen.c:52)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x63A074B: DMDAVTKWriteAll_VTS.A (grvtk.c:72)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x639A589: DMDAVTKWriteAll (grvtk.c:545)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x52B66F3: PetscViewerFlush_VTK (vtkv.c:100)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x52CFAAE: PetscViewerFlush (flush.c:26)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x52CEA95: PetscViewerDestroy (view.c:113)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70C7717: TSMonitorSolutionVTK (ts.c:5582)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x40313C: FormFunction (one.c:120)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x7066531: TSComputeIFunction_DMDA (dmdats.c:82)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70BA5EF: TSComputeIFunction (ts.c:857)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711E2DC: SNESTSFormFunction_BDF (bdf.c:368)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70C6E46: SNESTSFormFunction (ts.c:5014)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FDC8A6: SNESComputeFunction (snes.c:2383)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x7023556: SNESSolve_NEWTONTR (tr.c:297)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FD160F: SNESSolve (snes.c:4569)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: PetscMemcpy (bdf.c:223)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: PetscCitationsRegister (petscsys.h:2689)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: TSStep_BDF.A (bdf.c:265)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70C363A: TSStep (ts.c:3757)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Conditional jump or move depends on uninitialised value(s)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x5F10977: MatFDColoringSetUpBlocked_AIJ_Private (fdaij.c:146)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5F10977: MatFDColoringSetUp_SeqXAIJ.A (fdaij.c:284)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x585892A: MatFDColoringSetUp (fdmatrix.c:242)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FE5037: SNESComputeJacobianDefaultColor (snesj2.c:79)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FC8E4E: SNESComputeJacobian (snes.c:2717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70236E7: SNESSolve_NEWTONTR (tr.c:324)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FD160F: SNESSolve (snes.c:4569)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: PetscMemcpy (bdf.c:223)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: PetscCitationsRegister (petscsys.h:2689)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: TSStep_BDF.A (bdf.c:265)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70C363A: TSStep (ts.c:3757)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70C1999: TSSolve (ts.c:4154)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x402594: main (one.c:391)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Invalid write of size 4<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x5F10983: MatFDColoringSetUpBlocked_AIJ_Private (fdaij.c:150)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5F10983: MatFDColoringSetUp_SeqXAIJ.A (fdaij.c:284)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x585892A: MatFDColoringSetUp (fdmatrix.c:242)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FE5037: SNESComputeJacobianDefaultColor (snesj2.c:79)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FC8E4E: SNESComputeJacobian (snes.c:2717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70236E7: SNESSolve_NEWTONTR (tr.c:324)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FD160F: SNESSolve (snes.c:4569)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: PetscMemcpy (bdf.c:223)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: PetscCitationsRegister (petscsys.h:2689)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: TSStep_BDF.A (bdf.c:265)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70C363A: TSStep (ts.c:3757)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70C1999: TSSolve (ts.c:4154)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x402594: main (one.c:391)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Address 0x3a94fa80 is 0 bytes after a block of size 73,960,000 alloc'd<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x4C2C480: memalign (vg_replace_malloc.c:909)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x522FFE2: PetscMallocAlign (mal.c:52)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x52305F9: PetscMallocA (mal.c:418)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5F10778: MatFDColoringSetUpBlocked_AIJ_Private (fdaij.c:125)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5F10778: MatFDColoringSetUp_SeqXAIJ.A (fdaij.c:284)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x585892A: MatFDColoringSetUp (fdmatrix.c:242)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FE5037: SNESComputeJacobianDefaultColor (snesj2.c:79)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FC8E4E: SNESComputeJacobian (snes.c:2717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70236E7: SNESSolve_NEWTONTR (tr.c:324)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FD160F: SNESSolve (snes.c:4569)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: PetscMemcpy (bdf.c:223)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: PetscCitationsRegister (petscsys.h:2689)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: TSStep_BDF.A (bdf.c:265)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70C363A: TSStep (ts.c:3757)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70C1999: TSSolve (ts.c:4154)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x402594: main (one.c:391)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<span class="apple-converted-space"> </span><o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Invalid write of size 8<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x5F10991: MatFDColoringSetUpBlocked_AIJ_Private (fdaij.c:151)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5F10991: MatFDColoringSetUp_SeqXAIJ.A (fdaij.c:284)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x585892A: MatFDColoringSetUp (fdmatrix.c:242)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FE5037: SNESComputeJacobianDefaultColor (snesj2.c:79)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FC8E4E: SNESComputeJacobian (snes.c:2717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70236E7: SNESSolve_NEWTONTR (tr.c:324)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FD160F: SNESSolve (snes.c:4569)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: PetscMemcpy (bdf.c:223)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: PetscCitationsRegister (petscsys.h:2689)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: TSStep_BDF.A (bdf.c:265)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70C363A: TSStep (ts.c:3757)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70C1999: TSSolve (ts.c:4154)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x402594: main (one.c:391)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== Address 0x3a94fa88 is 8 bytes after a block of size 73,960,000 alloc'd<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== at 0x4C2C480: memalign (vg_replace_malloc.c:909)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x522FFE2: PetscMallocAlign (mal.c:52)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x52305F9: PetscMallocA (mal.c:418)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5F10778: MatFDColoringSetUpBlocked_AIJ_Private (fdaij.c:125)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x5F10778: MatFDColoringSetUp_SeqXAIJ.A (fdaij.c:284)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x585892A: MatFDColoringSetUp (fdmatrix.c:242)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FE5037: SNESComputeJacobianDefaultColor (snesj2.c:79)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FC8E4E: SNESComputeJacobian (snes.c:2717)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70236E7: SNESSolve_NEWTONTR (tr.c:324)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x6FD160F: SNESSolve (snes.c:4569)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: PetscMemcpy (bdf.c:223)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: PetscCitationsRegister (petscsys.h:2689)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x711917E: TSStep_BDF.A (bdf.c:265)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70C363A: TSStep (ts.c:3757)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x70C1999: TSSolve (ts.c:4154)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074== by 0x402594: main (one.c:391)<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">==236074==<o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal"> <o:p></o:p></p>
</div>
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</div>
<div>
<div>
<div>
<p class="MsoNormal"> <o:p></o:p></p>
</div>
</div>
</div>
<div>
<div>
<div>
<p class="MsoNormal">Sent from<span class="apple-converted-space"> </span><a href="https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgo.microsoft.com%2Ffwlink%2F%3FLinkId%3D550986&data=05%7C01%7Ckavousi%40mines.edu%7C69fba9c581cd4ac9adae08dab6e012ed%7C997209e009b346239a4d76afa44a675c%7C0%7C0%7C638023370775173292%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=3AHsDWTVLXZcgkPccM9Xwmq6a98y2zM3b1fS8FxwTm4%3D&reserved=0"><span style="color:purple">Mail</span></a><span class="apple-converted-space"> </span>for
Windows<o:p></o:p></p>
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</div>
</div>
</blockquote>
</div>
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</blockquote>
</div>
</div>
</div>
</blockquote>
</div>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
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