<div dir="ltr"><div dir="ltr">On Tue, Aug 23, 2022 at 10:33 AM Rafel Amer Ramon <<a href="mailto:rafel.amer@upc.edu">rafel.amer@upc.edu</a>> wrote:<br></div><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div>
<div>Hi,<br>
<br>
the files rules and variables are in /usr/lib64/petsc/conf, so I
have set<br>
<br>
<pre>~$ export PETSC_DIR=/usr</pre>
<pre>~$ cat Makefile</pre>
<pre>e: e.o
${CLINKER} -o e e.o ${PETSC_LIB}
include ${PETSC_DIR}/lib64/petsc/conf/variables
include ${PETSC_DIR}/lib64/petsc/conf/rules</pre>
<pre>~$</pre>
but, when I try to compile the program, I get the error<br>
<br>
<pre>~$ make e
gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld -fPIC -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 -o e e.o -L/usr/lib64 -L/usr//lib -lpetsc -lsuperlu -lflexiblas -lcgns -lhdf5 -lhdf5_hl -lmetis -lm -lX11 -lquadmath -lstdc++ -ldl
/usr/bin/ld: cannot open linker script file /builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld: El fitxer o directori no existeix
collect2: error: ld returned 1 exit status
make: *** [Makefile:2: e] Error 1
</pre>
In the file /usr/lib64/petsc/conf/petscvariables, there are some
references to the inexistent file
/builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld:<br>
<br>
<pre>~$ grep /builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld /usr/lib64/petsc/conf/petscvariables
CXX_LINKER_FLAGS = -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3
PCC_LINKER_FLAGS = -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld -fPIC -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3
FC_LINKER_FLAGS = -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld -fPIC -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld -lgfortran -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -O3 -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -O3
CONFIGURE_OPTIONS = --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --with-dependency-tracking=0 --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-cc=gcc --with-cxx=g++ --with-fc=gfortran CFLAGS=\"-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 -fPIC\" CXXFLAGS=\"-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 -fPIC\" FFLAGS=\"-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -O3 -fPIC\" LDFLAGS=\"-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld -fPIC\" COPTFLAGS=\"-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3\" CXXOPTFLAGS=\"-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3\" FOPTFLAGS=\"-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -O3\" FCFLAGS=\"-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -O3 -fPIC\" --CC_LINKER_FLAGS=\"-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld\" --FC_LINKER_FLAGS=\"-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld -lgfortran\" --with-default-arch=0 --with-make=1 --with-cmake-exec=/usr/bin/cmake3 --with-ctest-exec=/usr/bin/ctest3 --with-single-library=1 --with-precision=double --with-petsc-arch=x86_64 --with-clanguage=C --with-shared-libraries=1 --with-fortran-interfaces=1 --with-windows-graphics=0 --CC=gcc --FC=gfortran --CXX=g++ --with-shared-ld=ld --with-pic=1 --with-clib-autodetect=0 --with-fortranlib-autodetect=0 --with-threadsafety=0 --with-log=1 --with-mkl_sparse=0 --with-mkl_sparse_optimize=0 --with-mkl_cpardiso=0 --with-mkl_pardiso=0 --with-python=0 --with-cxxlib-autodetect=1 --with-debugging=0 --with-mumps-serial=1 --with-mpi=0 --with-hdf5=1 --with-hdf5-include= --with-hdf5-lib=\"-lhdf5 -lhdf5_hl\" --with-cgns=1 --with-cgns-include= --with-cgns-lib=-lcgns --with-x=1 --with-openmp=0 --with-hwloc=0 --with-ssl=0 --with-pthread=1 --with-valgrind=1 --with-64-bit-indices=0 --with-blaslapack=1 --with-blaslapack-lib=-lflexiblas --with-blaslapack-include=/usr/include/flexiblas --with-metis=1 --with-superlu=1 --with-superlu-include=/usr/include/SuperLU --with-superlu-lib=-lsuperlu
SL_LINKER_FUNCTION = -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))
~$
</pre>
<br>
then, I get the error <br>
<pre>/usr/bin/ld: cannot open linker script file /builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld: the file or folder doesn't exist
</pre></div></div></blockquote><div>I do not know who maintains these PETSc packages for Fedora, but they seem hopelessly broken.</div><div><br></div><div>I would recommend just installing yourself.</div><div><br></div><div> Thanks,</div><div><br></div><div> Matt </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div><div><pre></pre>
Best regards,<br>
<br>
Rafel Amer<br>
<br>
<pre></pre>
<pre></pre>
<br>
<br>
<br>
<br>
El 23/8/22 a les 16:04, Matthew Knepley ha escrit:<br>
</div>
<blockquote type="cite">
<div dir="ltr">
<div dir="ltr">On Tue, Aug 23, 2022 at 9:48 AM Rafel Amer Ramon
<<a href="mailto:rafel.amer@upc.edu" target="_blank">rafel.amer@upc.edu</a>>
wrote:<br>
</div>
<div class="gmail_quote">
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div>
<div><br>
Hi,<br>
<br>
yes, I can compile and run it:<br>
<br>
<pre>~$ mpicc -o pi-mpi pi-mpi.c -lm
~$ mpirun -np 16 --hostfile ~/hosts ./pi-mpi
Number of intervals: 2048
Result: 3.1411043724
Accuracy: 0.0004882812
Time: 0.0314383930
~$
</pre>
</div>
</div>
</blockquote>
<div>PETSc does not control the launch, so you must be using a
different MPI. For building the PETSc executable, try
instead</div>
<div>the minimum makefile</div>
<div><br>
</div>
<div>e: e.o</div>
<div> ${CLINKER} -o e e.o ${PETSC_LIB}</div>
<div><br>
</div>
<div>include ${PETSC_DIR}/lib/petsc/conf/variables</div>
<div>include ${PETSC_DIR}/lib/petsc/conf/rules</div>
<div class="gmail_quote"><br>
</div>
Thanks,</div>
<div class="gmail_quote"><br>
</div>
<div class="gmail_quote"> Matt<br>
<div> </div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div>
<div>Best regards,<br>
<br>
Rafel Amer<br>
<br>
<br>
<br>
<br>
El 23/8/22 a les 14:46, Matthew Knepley ha escrit:<br>
</div>
<blockquote type="cite">
<div dir="ltr">Can you run anything in parallel? Say the
small sample code that calculates pi?
<div><br>
</div>
<div> <a href="https://www.cs.usfca.edu/~mmalensek/cs220/schedule/code/week09/pi-mpi.c.html" target="_blank">https://www.cs.usfca.edu/~mmalensek/cs220/schedule/code/week09/pi-mpi.c.html</a></div>
<div><br>
</div>
<div> Thanks,</div>
<div><br>
</div>
<div> Matt</div>
</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Tue, Aug 23, 2022
at 6:34 AM Rafel Amer Ramon <<a href="mailto:rafel.amer@upc.edu" target="_blank">rafel.amer@upc.edu</a>>
wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div>
<div><br>
Hi,<br>
<br>
mpicc and mpirun are from the package
openmpi-devel-4.1.2-3.fc36.x86_64<br>
and the petsc64 library is linked with <font color="#ffffff">
/usr/lib64/openmpi/lib/libmpi.so.40</font>
<pre>~# ldd /lib64/libpetsc64.so.3.16.4
linux-vdso.so.1 (0x00007fff5becc000)
libflexiblas64.so.3 => /lib64/libflexiblas64.so.3 (0x00007f3030e30000)
libcgns.so.4.2 => /usr/lib64/openmpi/lib/libcgns.so.4.2 (0x00007f3030d46000)
libhdf5.so.200 => /usr/lib64/openmpi/lib/libhdf5.so.200 (0x00007f303091a000)
libm.so.6 => /lib64/libm.so.6 (0x00007f303083c000)
libX11.so.6 => /lib64/libX11.so.6 (0x00007f30306f4000)
libstdc++.so.6 => /lib64/libstdc++.so.6 (0x00007f30304c0000)
libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f303049e000)
libc.so.6 => /lib64/libc.so.6 (0x00007f303029c000)
libgfortran.so.5 => /lib64/libgfortran.so.5 (0x00007f302ffcf000)
libquadmath.so.0 => /lib64/libquadmath.so.0 (0x00007f302ff87000)
/lib64/ld-linux-x86-64.so.2 (0x00007f30327bb000)
<font color="#0000ff">libmpi.so.40 => /usr/lib64/openmpi/lib/libmpi.so.40 (0x00007f302fe59000)</font>
libsz.so.2 => /lib64/libsz.so.2 (0x00007f302fe50000)
libz.so.1 => /lib64/libz.so.1 (0x00007f302fe34000)
libxcb.so.1 => /lib64/libxcb.so.1 (0x00007f302fe08000)
libopen-rte.so.40 => /usr/lib64/openmpi/lib/libopen-rte.so.40 (0x00007f302fd4d000)
libopen-pal.so.40 => /usr/lib64/openmpi/lib/libopen-pal.so.40 (0x00007f302fc9f000)
libhwloc.so.15 => /lib64/libhwloc.so.15 (0x00007f302fc42000)
libevent_core-2.1.so.7 => /lib64/libevent_core-2.1.so.7 (0x00007f302fc07000)
libevent_pthreads-2.1.so.7 => /lib64/libevent_pthreads-2.1.so.7 (0x00007f302fc02000)
libXau.so.6 => /lib64/libXau.so.6 (0x00007f302fbfc000)
</pre>
I think that it's correct, but it don't work.<br>
<br>
Best regards,<br>
<br>
Rafel Amer<br>
<br>
El 22/8/22 a les 20:36, Barry Smith ha escrit:<br>
</div>
<blockquote type="cite">
<div><br>
</div>
Are you sure the mpirun you are using matches
the mpi that PETSc was built with? <br>
<div><br>
<blockquote type="cite">
<div>On Aug 22, 2022, at 2:31 PM, Rafel Amer
Ramon <<a href="mailto:rafel.amer@upc.edu" target="_blank">rafel.amer@upc.edu</a>>
wrote:</div>
<br>
<div>
<div> Hi,<br>
<br>
I have installed the following packages
on fedora 36<br>
<br>
<pre><font color="#0000ff">~# rpm -qa | grep petsc
petsc64-3.16.4-3.fc36.x86_64
petsc-3.16.4-3.fc36.x86_64
petsc-openmpi-3.16.4-3.fc36.x86_64
petsc-openmpi-devel-3.16.4-3.fc36.x86_64
python3-petsc-openmpi-3.16.4-3.fc36.x86_64
petsc-devel-3.16.4-3.fc36.x86_64
petsc64-devel-3.16.4-3.fc36.x86_64</font>
<font color="#0000ff">~# rpm -qa | grep openmpi
openmpi-4.1.2-3.fc36.x86_64
ptscotch-openmpi-6.1.2-2.fc36.x86_64
scalapack-openmpi-2.1.0-11.fc36.x86_64
openmpi-devel-4.1.2-3.fc36.x86_64
MUMPS-openmpi-5.4.1-2.fc36.x86_64
superlu_dist-openmpi-6.1.1-9.fc36.x86_64
hdf5-openmpi-1.12.1-5.fc36.x86_64
hypre-openmpi-2.18.2-6.fc36.x86_64
petsc-openmpi-3.16.4-3.fc36.x86_64
fftw-openmpi-libs-double-3.3.10-2.fc36.x86_64
fftw-openmpi-libs-long-3.3.10-2.fc36.x86_64
fftw-openmpi-libs-single-3.3.10-2.fc36.x86_64
fftw-openmpi-libs-3.3.10-2.fc36.x86_64
fftw-openmpi-devel-3.3.10-2.fc36.x86_64
petsc-openmpi-devel-3.16.4-3.fc36.x86_64
python3-petsc-openmpi-3.16.4-3.fc36.x86_64
scalapack-openmpi-devel-2.1.0-11.fc36.x86_64
python3-openmpi-4.1.2-3.fc36.x86_64
hdf5-openmpi-devel-1.12.1-5.fc36.x86_64
cgnslib-openmpi-4.2.0-6.fc36.x86_64
cgnslib-openmpi-devel-4.2.0-6.fc36.x86_64</font>
</pre>
and I try to compile and run the program
written in the file e.c<br>
<br>
<pre><font color="#0000ff">~# cat e.c
#include <petsc.h>
int main(int argc, char **argv) {
PetscErrorCode ierr;
PetscMPIInt rank;
ierr = PetscInitialize(&argc,&argv,NULL,
"Compute e in parallel with PETSc.\n\n"); if (ierr) return ierr;
ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank); CHKERRQ(ierr);
ierr = PetscPrintf(PETSC_COMM_WORLD,"My rank is %d\n",rank); CHKERRQ(ierr);
return PetscFinalize();
}
</font>
</pre>
I compile it with the command<br>
<br>
<pre><font color="#0000ff">~# mpicc -o e e.c -I/usr/include/petsc64 -lpetsc64</font>
</pre>
and I run it with <br>
<br>
<pre><font color="#0000ff">~# mpirun -np 8 ./e</font>
<font color="#0000ff">My rank is 0
My rank is 0
My rank is 0
My rank is 0
My rank is 0
My rank is 0
My rank is 0
My rank is 0</font>
</pre>
but all my process get rank 0.<br>
<br>
Do you know what I'm doing wrong?<br>
<br>
Thank you!!<br>
<br>
Best regards,<br>
<br>
Rafel Amer </div>
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<div><br>
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-- <br>
<div dir="ltr">
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div>What most experimenters take for
granted before they begin their
experiments is infinitely more interesting
than any results to which their
experiments lead.<br>
-- Norbert Wiener</div>
<div><br>
</div>
<div><a href="http://www.cse.buffalo.edu/~knepley/" target="_blank">https://www.cse.buffalo.edu/~knepley/</a><br>
</div>
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</div>
</div>
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</blockquote>
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</div>
</blockquote>
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<div><br>
</div>
-- <br>
<div dir="ltr">
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div>What most experimenters take for granted before
they begin their experiments is infinitely more
interesting than any results to which their
experiments lead.<br>
-- Norbert Wiener</div>
<div><br>
</div>
<div><a href="http://www.cse.buffalo.edu/~knepley/" target="_blank">https://www.cse.buffalo.edu/~knepley/</a><br>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
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</blockquote>
<br>
</div>
</blockquote></div><br clear="all"><div><br></div>-- <br><div dir="ltr" class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>-- Norbert Wiener</div><div><br></div><div><a href="http://www.cse.buffalo.edu/~knepley/" target="_blank">https://www.cse.buffalo.edu/~knepley/</a><br></div></div></div></div></div></div></div></div>