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Veronika,
<div class=""><br class="">
</div>
<div class="">There is something screwy going on with some hombrew gcc installs. Not sure why.
<div class="">In many case, creating a symbolic link libgcc_s.dylib -> libgcc_s.1.1.dylib in /opt/homebrew/opt/gcc/lib/gcc/11 fixes this<br class="">
<div><br class="">
</div>
<div>Regards,</div>
<div>Blaise</div>
<div><br class="">
<blockquote type="cite" class="">
<div class="">On Apr 8, 2022, at 5:41 AM, Veronika Ulanova <<a href="mailto:19veronika97@gmail.com" class="">19veronika97@gmail.com</a>> wrote:</div>
<br class="Apple-interchange-newline">
<div class="">
<div dir="ltr" class="">I pulled the updated repo but now I get a different error also related to architecture:<br class="">
<br class="">
<div style="margin: 0px; font-variant-numeric: normal; font-variant-east-asian: normal; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
<span class="gmail-s1" style="font-variant-ligatures:no-common-ligatures">ld: file not found: @rpath/libgcc_s.1.1.dylib for architecture arm64</span></div>
<div style="margin: 0px; font-variant-numeric: normal; font-variant-east-asian: normal; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
<span class="gmail-s1" style="font-variant-ligatures:no-common-ligatures">clang: error: linker command failed with exit code 1 (use -v to see invocation)</span></div>
<div style="margin: 0px; font-variant-numeric: normal; font-variant-east-asian: normal; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
<span class="gmail-s1" style="font-variant-ligatures:no-common-ligatures">error: command '/Users/veronikaulanova/Documents/documents/Oxford_work/petsc/arch-darwin-c-debug/bin/mpicc' failed with exit code 1</span></div>
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<span class="gmail-s1" style="font-variant-ligatures:no-common-ligatures">**************************ERROR*************************************</span></div>
<div style="margin: 0px; font-variant-numeric: normal; font-variant-east-asian: normal; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
<span class="gmail-s1" style="font-variant-ligatures:no-common-ligatures">Error building petsc4py.</span></div>
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<span class="gmail-s1" style="font-variant-ligatures:no-common-ligatures">********************************************************************</span></div>
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<span class="gmail-s1" style="font-variant-ligatures:no-common-ligatures">make[2]: *** [petsc4pybuild] Error 1</span></div>
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<span class="gmail-s1" style="font-variant-ligatures:no-common-ligatures"><b class="">**************************ERROR*************************************</b></span></div>
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<span class="gmail-s1" style="font-variant-ligatures:no-common-ligatures"><b class=""><span class="gmail-Apple-converted-space">
</span>Error during compile, check arch-darwin-c-debug/lib/petsc/conf/make.log</b></span></div>
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<span class="gmail-s1" style="font-variant-ligatures:no-common-ligatures"><b class=""><span class="gmail-Apple-converted-space">
</span>Send it and arch-darwin-c-debug/lib/petsc/conf/configure.log to <a href="mailto:petsc-maint@mcs.anl.gov" class="">
petsc-maint@mcs.anl.gov</a></b></span></div>
<div style="margin: 0px; font-variant-numeric: normal; font-variant-east-asian: normal; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(202, 51, 35);" class="">
<span class="gmail-s1" style="font-variant-ligatures:no-common-ligatures"><b class="">********************************************************************</b></span></div>
<div style="margin: 0px; font-variant-numeric: normal; font-variant-east-asian: normal; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(202, 51, 35);" class="">
<span class="gmail-s1" style="font-variant-ligatures:no-common-ligatures"><b class=""><br class="">
</b></span></div>
<div style="margin: 0px; font-variant-numeric: normal; font-variant-east-asian: normal; font-stretch: normal; line-height: normal;" class="">
<font style="" face="arial, sans-serif" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Any idea about this one? Thank you</span></font></div>
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<br class="">
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Fri, Apr 8, 2022 at 10:09 AM Veronika Ulanova <<a href="mailto:19veronika97@gmail.com" class="">19veronika97@gmail.com</a>> wrote:<br class="">
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div dir="ltr" class="">Hello Satish,<br class="">
<br class="">
By the repo you mean the main PETSc repository?<br class="">
<br class="">
Thank you, Veronika</div>
<br class="">
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Fri, Apr 8, 2022 at 9:49 AM Satish Balay <<a href="mailto:balay@mcs.anl.gov" target="_blank" class="">balay@mcs.anl.gov</a>> wrote:<br class="">
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
A fix for M1 was recently pushed to the git repo.<br class="">
<br class="">
Can you try using it [with either release or main branches] - and see if that works?<br class="">
<br class="">
Satish<br class="">
<br class="">
<br class="">
<br class="">
On Fri, 8 Apr 2022, Veronika Ulanova wrote:<br class="">
<br class="">
> Hi,<br class="">
> <br class="">
> I have been trying to configure the petsc4py package along with my PETSc<br class="">
> installation for my research. I have searched for solutions on the internet<br class="">
> but there was no luck, this is the error I get when I am trying to<br class="">
> configure PETSC and use it to run examples of code that utilise the<br class="">
> petsc4py package...<br class="">
> <br class="">
> <br class="">
> <br class="">
> File<br class="">
> "/Users/veronikaulanova/Documents/documents/Oxford_work/petsc/arch-darwin-c-debug/lib/petsc4py/PETSc.py",<br class="">
> line 3, in <module><br class="">
> <br class="">
> PETSc = ImportPETSc(ARCH)<br class="">
> <br class="">
> File<br class="">
> "/Users/veronikaulanova/Documents/documents/Oxford_work/petsc/arch-darwin-c-debug/lib/petsc4py/lib/__init__.py",<br class="">
> line 29, in ImportPETSc<br class="">
> <br class="">
> return Import('petsc4py', 'PETSc', path, arch)<br class="">
> <br class="">
> File<br class="">
> "/Users/veronikaulanova/Documents/documents/Oxford_work/petsc/arch-darwin-c-debug/lib/petsc4py/lib/__init__.py",<br class="">
> line 73, in Import<br class="">
> <br class="">
> module = import_module(pkg, name, path, arch)<br class="">
> <br class="">
> File<br class="">
> "/Users/veronikaulanova/Documents/documents/Oxford_work/petsc/arch-darwin-c-debug/lib/petsc4py/lib/__init__.py",<br class="">
> line 58, in import_module<br class="">
> <br class="">
> with f: return imp.load_module(fullname, f, fn, info)<br class="">
> <br class="">
> File "/opt/homebrew/Cellar/python@3.9/3.9.10/Frameworks/Python.framework/Versions/3.9/lib/python3.9/imp.py",<br class="">
> line 242, in load_module<br class="">
> <br class="">
> return load_dynamic(name, filename, file)<br class="">
> <br class="">
> File "/opt/homebrew/Cellar/python@3.9/3.9.10/Frameworks/Python.framework/Versions/3.9/lib/python3.9/imp.py",<br class="">
> line 342, in load_dynamic<br class="">
> <br class="">
> return _load(spec)<br class="">
> <br class="">
> ImportError:<br class="">
> dlopen(/Users/veronikaulanova/Documents/documents/Oxford_work/petsc/arch-darwin-c-debug/lib/petsc4py/lib/arch-darwin-c-debug/<br class="">
> <a href="http://petsc.cpython-39-darwin.so/" rel="noreferrer" target="_blank" class="">
PETSc.cpython-39-darwin.so</a> <<a href="http://petsc.cpython-39-darwin.so/" rel="noreferrer" target="_blank" class="">http://petsc.cpython-39-darwin.so/</a>>, 2): no<br class="">
> suitable image found. Did find:<br class="">
> <br class="">
> /Users/veronikaulanova/Documents/documents/Oxford_work/petsc/arch-darwin-c-debug/lib/petsc4py/lib/arch-darwin-c-debug/<br class="">
> <a href="http://petsc.cpython-39-darwin.so/" rel="noreferrer" target="_blank" class="">
PETSc.cpython-39-darwin.so</a> <<a href="http://petsc.cpython-39-darwin.so/" rel="noreferrer" target="_blank" class="">http://petsc.cpython-39-darwin.so/</a>>: mach-o,<br class="">
> but wrong architecture<br class="">
> <br class="">
> /Users/veronikaulanova/Documents/documents/Oxford_work/petsc/arch-darwin-c-debug/lib/petsc4py/lib/arch-darwin-c-debug/<br class="">
> <a href="http://petsc.cpython-39-darwin.so/" rel="noreferrer" target="_blank" class="">
PETSc.cpython-39-darwin.so</a> <<a href="http://petsc.cpython-39-darwin.so/" rel="noreferrer" target="_blank" class="">http://petsc.cpython-39-darwin.so/</a>>: stat()<br class="">
> failed with errno=25<br class="">
> <br class="">
> <br class="">
> As you can see I am using an M1 mac and therefore that causes the petsc4py<br class="">
> package to give me an error (highlighted above), but do you have any idea<br class="">
> of how I can solve it or why it is even there? I know that the new M1 has a<br class="">
> different architecture to intel macs but I have no idea of where to<br class="">
> start with fixing this or how to make it work. Any help would be much<br class="">
> appreciated, thank you in advance.<br class="">
> <br class="">
> Kind Regards, Veronika<br class="">
> <br class="">
<br class="">
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<div>-- <br class="">
Professor, Department of Mathematics & Statistics<br class="">
Hamilton Hall room 409A, McMaster University<br class="">
1280 Main Street West, Hamilton, Ontario L8S 4K1, Canada <br class="">
Tel. +1 (905) 525 9140 ext. 27243</div>
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