<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
<style type="text/css" style="display:none;"> P {margin-top:0;margin-bottom:0;} </style>
</head>
<body dir="ltr">
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Hi Matt,</div>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
First, I wish a Happy New Year 2022 to you and to the whole PETSc developper team.</div>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Waiting I can push my branch on the remote repository (I am going to post on petsc-dev just after), the error in DMPlexCreateGlobalToNaturalSF with parmetis or ptscotch partitionners raises with src/dm/impls/plex/tests/ex44.c on the branch knepley/fix-plex-g2n.
I just defined 2 fields instead of 1 in ex44.c:</div>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<div style="color:rgb(212, 212, 212);background-color:rgb(30, 30, 30);font-family:Menlo, Monaco, "Courier New", monospace;font-size:12px;line-height:18px">
<span><span> </span><span style="color:rgb(86, 156, 214)">const</span><span> </span><span style="color:rgb(78, 201, 176)">PetscInt</span><span> </span><span style="color:rgb(156, 220, 254)">Nf</span><span> =
</span><span style="color:rgb(181, 206, 168)">2</span><span>;</span></span>
<div><span> </span><span style="color:rgb(86, 156, 214)">const</span><span> </span><span style="color:rgb(78, 201, 176)">PetscInt</span><span> </span><span style="color:rgb(156, 220, 254)">numComp</span><span>[</span><span style="color:rgb(181, 206, 168)">2</span><span>]
= {</span><span style="color:rgb(181, 206, 168)">1</span><span>, </span><span style="color:rgb(156, 220, 254)">dim</span><span>};</span></div>
<span><span> </span><span style="color:rgb(86, 156, 214)">const</span><span> </span><span style="color:rgb(78, 201, 176)">PetscInt</span><span> </span><span style="color:rgb(156, 220, 254)">numDof</span><span>[</span><span style="color:rgb(181, 206, 168)">6</span><span>]
= {</span><span style="color:rgb(181, 206, 168)">1</span><span>, </span><span style="color:rgb(181, 206, 168)">0</span><span>,
</span><span style="color:rgb(181, 206, 168)">0</span><span>, </span><span style="color:rgb(181, 206, 168)">0</span><span>,
</span><span style="color:rgb(181, 206, 168)">0</span><span>, </span><span style="color:rgb(156, 220, 254)">dim</span><span>};</span></span></div>
<br>
</div>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
on lines 284 to 286. I get the error </div>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
</div>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: Invalid argument</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: Input array needs to be sorted</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: Petsc Development GIT revision: v3.16.1-235-g50d0f7a46d<span class="Apple-converted-space">
</span>GIT Date: 2021-12-19 19:19:22 -0500</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: ../ex44 on a arch-darwin-c-debug named marboeua-1.math.mcmaster.ca by alexismarboeuf Thu Jan<span class="Apple-converted-space">
</span>6 17:23:54 2022</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: Configure options --download-chaco=1 --download-exodusii=1 --download-fblaslapack=1 --download-hdf5=1 --download-hypre=1
--download-ml=1 --download-netcdf=1 --download-pnetcdf=1 --download-sieve=1 --download-sowing=1 --download-yaml=1 --download-zlib=1 --download-metis=1 --download-parmetis=1 --download-ptscotch=1 --with-boost-dir=/opt/homebrew/Cellar/boost/1.76.0 --with-boost=1
--with-c2html=0 --with-debugging=1 --with-fortran-datatypes=1 --with-mpi-dir=/opt/homebrew/Cellar/mpich/3.4.3 --with-ranlib=ranlib --with-x11=1</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: #1 PetscSortedRemoveDupsInt() at /Users/alexismarboeuf/Documents/petsc/src/sys/utils/sorti.c:308</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: #2 PetscSFCreateEmbeddedLeafSF() at /Users/alexismarboeuf/Documents/petsc/src/vec/is/sf/interface/sf.c:1405</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: #3 DMPlexCreateGlobalToNaturalSF() at /Users/alexismarboeuf/Documents/petsc/src/dm/impls/plex/plexnatural.c:174</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: #4 DMPlexDistribute() at /Users/alexismarboeuf/Documents/petsc/src/dm/impls/plex/plexdistribute.c:1747</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: #5 main() at /Users/alexismarboeuf/Documents/petsc/src/dm/impls/plex/tests/ex44.c:299</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: Invalid argument</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: Input array needs to be sorted</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: Petsc Development GIT revision: v3.16.1-235-g50d0f7a46d<span class="Apple-converted-space">
</span>GIT Date: 2021-12-19 19:19:22 -0500</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: ../ex44 on a arch-darwin-c-debug named marboeua-1.math.mcmaster.ca by alexismarboeuf Thu Jan<span class="Apple-converted-space">
</span>6 17:23:54 2022</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: Configure options --download-chaco=1 --download-exodusii=1 --download-fblaslapack=1 --download-hdf5=1 --download-hypre=1
--download-ml=1 --download-netcdf=1 --download-pnetcdf=1 --download-sieve=1 --download-sowing=1 --download-yaml=1 --download-zlib=1 --download-metis=1 --download-parmetis=1 --download-ptscotch=1 --with-boost-dir=/opt/homebrew/Cellar/boost/1.76.0 --with-boost=1
--with-c2html=0 --with-debugging=1 --with-fortran-datatypes=1 --with-mpi-dir=/opt/homebrew/Cellar/mpich/3.4.3 --with-ranlib=ranlib --with-x11=1</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: #1 PetscSortedRemoveDupsInt() at /Users/alexismarboeuf/Documents/petsc/src/sys/utils/sorti.c:308</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: #2 PetscSFCreateEmbeddedLeafSF() at /Users/alexismarboeuf/Documents/petsc/src/vec/is/sf/interface/sf.c:1405</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: #3 DMPlexCreateGlobalToNaturalSF() at /Users/alexismarboeuf/Documents/petsc/src/dm/impls/plex/plexnatural.c:174</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: #4 DMPlexDistribute() at /Users/alexismarboeuf/Documents/petsc/src/dm/impls/plex/plexdistribute.c:1747</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: #5 main() at /Users/alexismarboeuf/Documents/petsc/src/dm/impls/plex/tests/ex44.c:299</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: PETSc Option Table entries:</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: -field</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: [0]PETSC ERROR: PETSc Option Table entries:</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: -field</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: -petscpartitioner_type parmetis</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov----------</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">-petscpartitioner_type parmetis</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov----------</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">Abort(62) on node 0 (rank 0 in comm 0): application called MPI_Abort(MPI_COMM_WORLD, 62) - process 0</span></p>
<p style="margin:0.0px 0.0px 0.0px 0.0px;font:11.0px Menlo;color:#000000"><span style="font-variant-ligatures:no-common-ligatures">Abort(62) on node 1 (rank 1 in comm 0): application called MPI_Abort(MPI_COMM_WORLD, 62) - process 1</span></p>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">running </span></div>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span style="color: rgb(0, 0, 0); font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;"><br>
</span></div>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span style="color: rgb(0, 0, 0); font-family: Calibri, Helvetica, sans-serif; font-size: 12pt;">mpiexec -n 2 ../ex44 -field -petscpartitioner_type parmetis </span></div>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span style="color: rgb(0, 0, 0); font-family: Menlo; font-size: 11px; font-style: normal; font-variant-caps: normal; font-variant-ligatures: no-common-ligatures;"><br>
</span></div>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span style="color: rgb(0, 0, 0); font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; font-style: normal; font-variant-caps: normal; font-variant-ligatures: no-common-ligatures;">in $PETSC_DIR/$PETSC_ARCH</span><span style="color: rgb(0, 0, 0); font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; font-style: normal; font-variant-caps: normal;">/tests/dm/impls/plex/tests/runex44_0.</span></div>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Thanks a lot for your time and your help.</div>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span style="margin:0px;font-family:Calibri, Arial, Helvetica, sans-serif;font-size:12pt;caret-color:rgb(0, 0, 0)"><span style="margin:0px;font-size:15px;background-color:rgb(255, 255, 255);display:inline !important">----------------</span><span style="margin:0px;background-color:rgb(255, 255, 255);display:inline !important"></span><span style="margin:0px;font-size:15px;background-color:rgb(255, 255, 255);display:inline !important">---------------------------------------------------</span></span>
<div style="margin:0px;font-family:Calibri, Arial, Helvetica, sans-serif;font-size:12pt;caret-color:rgb(0, 0, 0)">
<span style="margin:0px;font-size:15px;background-color:rgb(255, 255, 255);display:inline !important">Alexis Marboeuf</span></div>
<div style="margin:0px;font-family:Calibri, Arial, Helvetica, sans-serif;font-size:12pt;caret-color:rgb(0, 0, 0)">
<span style="margin:0px;font-size:15px;background-color:rgb(255, 255, 255);display:inline !important">Postdoctoral fellow, Department of Mathematics & Statistics</span><br>
<span style="margin:0px;font-size:15px;background-color:rgb(255, 255, 255);display:inline !important">Hamilton Hall room 409B, McMaster University</span><br style="font-size:15px">
<span style="margin:0px;font-size:15px;background-color:rgb(255, 255, 255);display:inline !important">1280 Main Street West, Hamilton, Ontario L8S 4K1, Canada</span></div>
<div style="margin:0px;font-family:Calibri, Arial, Helvetica, sans-serif;font-size:12pt;caret-color:rgb(0, 0, 0)">
<span style="margin:0px;font-size:15px;background-color:rgb(255, 255, 255);display:inline !important">EMail: marboeua@mcmaster.ca</span></div>
<div style="margin:0px;font-family:Calibri, Arial, Helvetica, sans-serif;font-size:12pt;caret-color:rgb(0, 0, 0)">
<span style="margin:0px;font-size:15px;background-color:rgb(255, 255, 255);display:inline !important">Tel. +1 (905) 525 9140 ext. 27031</span><br>
</div>
<span style="margin:0px;font-family:Calibri, Arial, Helvetica, sans-serif;font-size:12pt;caret-color:rgb(0, 0, 0)"><span style="margin:0px;font-size:15px;background-color:rgb(255, 255, 255);display:inline !important"><span style="margin:0px;font-size:12pt;text-align:left;background-color:rgb(255, 255, 255)"><span style="margin:0px;font-size:15px;text-align:start;background-color:rgb(255, 255, 255);display:inline !important">-------------------------------------------------------------------</span></span></span></span></div>
<div style="font-family: Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span style="margin:0px;font-family:Calibri, Arial, Helvetica, sans-serif;font-size:12pt;caret-color:rgb(0, 0, 0)"><span style="margin:0px;font-size:15px;background-color:rgb(255, 255, 255);display:inline !important"><span style="margin:0px;font-size:12pt;text-align:left;background-color:rgb(255, 255, 255)"><span style="margin:0px;font-size:15px;text-align:start;background-color:rgb(255, 255, 255);display:inline !important"><br>
</span></span></span></span></div>
<div>
<div dir="ltr">
<div>
<div id="x_appendonsend"></div>
<hr tabindex="-1" style="display:inline-block; width:98%">
<div id="x_divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" color="#000000" style="font-size:11pt"><b>De :</b> Alexis Marboeuf <marboeua@mcmaster.ca><br>
<b>Envoyé :</b> lundi 20 décembre 2021 15:34<br>
<b>À :</b> Matthew Knepley <knepley@gmail.com><br>
<b>Cc :</b> petsc-dev@mcs.anl.gov <petsc-dev@mcs.anl.gov><br>
<b>Objet :</b> RE: [petsc-dev] DMPlexCreateGlobalToNaturalSF and partitioners</font>
<div> </div>
</div>
<div dir="ltr">
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="color:rgb(0,0,0); font-family:Calibri,Helvetica,sans-serif; font-size:12pt">Hi Matt,</span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="color:rgb(0,0,0); font-family:Calibri,Helvetica,sans-serif; font-size:12pt"><br>
</span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="color:rgb(0,0,0); font-family:Calibri,Helvetica,sans-serif; font-size:12pt">I created a branch marboeuf/plex-naturaldm starting from knepley/fix-plex-g2n with my minor modifications. It's incomplete now: src/dm/impls/plex/plex.c for Sub or SuperDM
are not updated and my new example src/dm/impls/plex/tests/ex47.c just does one call of DMPlexDistribute. But I have the error I mentioned with partitioners. I am configuring PETSc with </span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<br>
</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">./configure --download-chaco=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--download-exodusii=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--download-fblaslapack=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--download-hdf5=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--download-hypre=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--download-metis=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--download-ml=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--download-netcdf=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--download-parmetis=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--download-pnetcdf=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--download-ptscotch=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--download-sieve=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--download-sowing=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--download-yaml=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--download-zlib=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--with-boost-dir=/opt/homebrew/Cellar/boost/</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">.</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">76</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">.</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">0</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--with-boost=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--with-c2html=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">0</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--with-debugging=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--with-fortran-datatypes=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--with-mpi-dir=/opt/homebrew/Cellar/mpich/</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">3</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">.</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">4</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">.</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">2</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">--with-ranlib=ranlib
--with-x11=</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">1</span><br>
</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="margin:0px; font-family:Menlo,Monaco,"Courier New",monospace; font-size:12px; color:rgb(0,0,0)"><br>
</span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">o</span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">n my MacMook Pro Apple M1 Pro under the arm64 architecture.
I am running</span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<br>
</div>
<div style="font-size:12pt; color:rgb(0,0,0)"><font face="Calibri, Helvetica, sans-serif">mpiexec -n 2 ../ex47 -petscpartitioner_type parmetis</font></div>
<div style="font-size:12pt; color:rgb(0,0,0)"><br>
</div>
<div style="font-size:12pt; color:rgb(0,0,0)"><font face="Calibri, Helvetica, sans-serif">in $PETSC_DIR/$PETSC_ARCH/tests/dm/impls/plex/tests/runex47_0 which raises the error. The example with -<span style="background-color:rgb(255,255,255); display:inline!important">petscpartitioner_type
simple works fine. ex44 also works fine even with parmetis or ptscotch partitioners. The reason is I defined 2 fields in the section of ex47 which is the only difference with the first test of ex44 for now.</span></font></div>
<div style="font-size:12pt; color:rgb(0,0,0)"><font face="Calibri, Helvetica, sans-serif"><span style="background-color:rgb(255,255,255); display:inline!important"><br>
</span></font></div>
<div style="font-size:12pt; color:rgb(0,0,0)"><font face="Calibri, Helvetica, sans-serif"><span style="background-color:rgb(255,255,255); display:inline!important">I am not allowed to push my branch to the remote repository under my Username AlexisMarb although
I defined an ssh key. As soon as I am able to push it I'll do it so you can checkout and test.</span></font></div>
<div style="font-size:12pt; color:rgb(0,0,0)"><font face="Calibri, Helvetica, sans-serif"><span style="background-color:rgb(255,255,255); display:inline!important"><br>
</span></font></div>
<div style="font-size:12pt; color:rgb(0,0,0)"><font face="Calibri, Helvetica, sans-serif"><span style="background-color:rgb(255,255,255); display:inline!important">Thanks a lot for your time and help.</span></font></div>
<div>
<div id="x_x_Signature">
<div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline!important">----------------</span><span style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; text-align:start; background-color:rgb(255,255,255); display:inline!important; color:rgb(0,0,0)"></span><span style="font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline!important">---------------------------------------------------</span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline!important">Alexis Marboeuf</span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline!important">Postdoctoral fellow, Department of Mathematics & Statistics</span><br>
<span style="font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline!important">Hamilton Hall room 409B, McMaster University</span><br style="font-size:15px; text-align:start">
<span style="font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline!important">1280 Main Street West, Hamilton, Ontario L8S 4K1, Canada</span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline!important">EMail: marboeua@mcmaster.ca</span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline!important">Tel. +1 (905) 525 9140 ext. 27031</span><br>
</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline!important"><span style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; text-align:left; background-color:rgb(255,255,255)"><span style="margin:0px; font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline!important">-------------------------------------------------------------------</span></span><br>
</span></div>
</div>
</div>
</div>
<div id="x_x_appendonsend"></div>
<hr tabindex="-1" style="display:inline-block; width:98%">
<div id="x_x_divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" color="#000000" style="font-size:11pt"><b>De :</b> Matthew Knepley <knepley@gmail.com><br>
<b>Envoyé :</b> vendredi 17 décembre 2021 17:44<br>
<b>À :</b> Alexis Marboeuf <marboeua@mcmaster.ca><br>
<b>Cc :</b> petsc-dev@mcs.anl.gov <petsc-dev@mcs.anl.gov><br>
<b>Objet :</b> Re: [petsc-dev] DMPlexCreateGlobalToNaturalSF and partitioners</font>
<div> </div>
</div>
<div>
<div dir="ltr">
<div dir="ltr">On Fri, Dec 17, 2021 at 3:04 PM Alexis Marboeuf <<a href="mailto:marboeua@mcmaster.ca">marboeua@mcmaster.ca</a>> wrote:<br>
</div>
<div class="x_x_x_gmail_quote">
<blockquote class="x_x_x_gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left:1px solid rgb(204,204,204); padding-left:1ex">
<div dir="ltr">
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
Dear PETSc Team,</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<br>
</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
Following the merge request !4547 for fixing the Global To Natural map, I am implementing modifications to introduce a "natural" DM (i.e. the DM used for IO): see the discussion in
<a href="https://gitlab.com/petsc/petsc/-/merge_requests/4547" id="x_x_x_gmail-m_-891904140753823343LPNoLPOWALinkPreview" target="_blank">
https://gitlab.com/petsc/petsc/-/merge_requests/4547</a>. I am writing an example for that, very similar to src/dm/impls/plex/tests/ex44.c added by the merge request, and running on 2 processors. The idea is to: (i) create a DM (the same distributed 2x5 mesh
of ex44.c); (ii) call multiple times DMPlexDistribute with different partitioners and set one of the DMs as the "natural" DM; and (iii) see if we can reconstruct correctly the "natural" ordering and distribution from the last DM and the Global To Natural map.
I am having some troubles however with at least parmetis and ptscotch partitioners which raise an error inside DMPlexCreateGlobalToNatural. Here is the error:</div>
</div>
</blockquote>
<div><br>
</div>
<div>The easiest thing to do here is to start a branch from the !4547 branch that I can checkout, and then tell me how to run what you are running.</div>
<div><br>
</div>
<div> Thanks,</div>
<div><br>
</div>
<div> Matt</div>
<div> </div>
<blockquote class="x_x_x_gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left:1px solid rgb(204,204,204); padding-left:1ex">
<div dir="ltr">
<div></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: [1]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: Invalid argument</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: Input array needs to be sorted</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">Invalid argument</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: Input array needs to be sorted</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: See <a href="https://petsc.org/release/faq/" target="_blank">
https://petsc.org/release/faq/</a> for trouble shooting.</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: [1]PETSC ERROR: See
<a href="https://petsc.org/release/faq/" target="_blank">https://petsc.org/release/faq/</a> for trouble shooting.</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: Petsc Development GIT revision: v3.16.1-435-g007f11b901<span>
</span>GIT Date: 2021-12-01 14:31:21 +0000</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">Petsc Development GIT revision: v3.16.1-435-g007f11b901<span>
</span>GIT Date: 2021-12-01 14:31:21 +0000</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: ../ex47 on a arch-darwin-c-debug named
<a href="http://marboeua-1.math.mcmaster.ca" target="_blank">marboeua-1.math.mcmaster.ca</a> by alexismarboeuf Thu Dec 16 22:39:20 2021</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: ../ex47 on a arch-darwin-c-debug named
<a href="http://marboeua-1.math.mcmaster.ca" target="_blank">marboeua-1.math.mcmaster.ca</a> by alexismarboeuf Thu Dec 16 22:39:20 2021</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: [0]PETSC ERROR: Configure options --force --download-fblaslapack=1 --download-exodusii=1 --download-hdf5=1 --download-chaco=1 --download-metis=1 --download-parmetis=1 -download-ptscotch=1
--download-sowing=1 --download-hypre=1 --download-ml=1 --download-netcdf=1 --download-yaml=1 --download-zlib=1 --download-pnetcdf=1 --download-sieve=1 --with-boost=1 --with-boost-dir=/opt/homebrew/Cellar/boost/1.76.0 with-clanguage=C++ --with-c2html=0 --with-fortran-datatypes=1
--with-mpi-dir=/opt/homebrew/Cellar/mpich/3.4.2 --with-debugging=1 --with-ranlib=ranlib --with-x11=1</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: Configure options --force --download-fblaslapack=1 --download-exodusii=1 --download-hdf5=1 --download-chaco=1 --download-metis=1 --download-parmetis=1 -download-ptscotch=1 --download-sowing=1
--download-hypre=1 --download-ml=1 --download-netcdf=1 --download-yaml=1 --download-zlib=1 --download-pnetcdf=1 --download-sieve=1 --with-boost=1 --with-boost-dir=/opt/homebrew/Cellar/boost/1.76.0 with-clanguage=C++ --with-c2html=0 --with-fortran-datatypes=1
--with-mpi-dir=/opt/homebrew/Cellar/mpich/3.4.2 --with-debugging=1 --with-ranlib=ranlib --with-x11=1</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: #1 PetscSortedRemoveDupsInt() at /Users/alexismarboeuf/Documents/petsc2/src/sys/utils/sorti.c:308</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: #2 PetscSFCreateEmbeddedLeafSF() at /Users/alexismarboeuf/Documents/petsc2/src/vec/is/sf/interface/sf.c:1409</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: #1 PetscSortedRemoveDupsInt() at /Users/alexismarboeuf/Documents/petsc2/src/sys/utils/sorti.c:308</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: #2 PetscSFCreateEmbeddedLeafSF() at /Users/alexismarboeuf/Documents/petsc2/src/vec/is/sf/interface/sf.c:1409</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: #3 DMPlexCreateGlobalToNaturalSF() at /Users/alexismarboeuf/Documents/petsc2/src/dm/impls/plex/plexnatural.c:173</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: #4 DMPlexDistribute() at /Users/alexismarboeuf/Documents/petsc2/src/dm/impls/plex/plexdistribute.c:1755</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: #5 main() at /Users/alexismarboeuf/Documents/petsc2/src/dm/impls/plex/tests/ex47.c:289</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: PETSc Option Table entries:</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: -petscpartitioner_type ptscotch</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[1]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov----------</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">Abort(62) on node 1 (rank 1 in comm 0): application called MPI_Abort(MPI_COMM_WORLD, 62) - process 1</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">#3 DMPlexCreateGlobalToNaturalSF() at /Users/alexismarboeuf/Documents/petsc2/src/dm/impls/plex/plexnatural.c:173</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: #4 DMPlexDistribute() at /Users/alexismarboeuf/Documents/petsc2/src/dm/impls/plex/plexdistribute.c:1755</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: #5 main() at /Users/alexismarboeuf/Documents/petsc2/src/dm/impls/plex/tests/ex47.c:289</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: PETSc Option Table entries:</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: -petscpartitioner_type ptscotch</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">[0]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov----------</span></p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0px; margin-bottom:0px; margin-top:0px; margin-bottom:0px; margin:0px; font:11px Menlo; color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">Abort(62) on node 0 (rank 0 in comm 0): application called MPI_Abort(MPI_COMM_WORLD, 62) - process 0</span></p>
<br>
</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
Thanks all for your help.</div>
<div>
<div id="x_x_x_gmail-m_-891904140753823343Signature">
<div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline">-------------------------------------------------------------------</span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline">Alexis Marboeuf</span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline">Postdoctoral fellow, Department of Mathematics & Statistics</span><br>
<span style="font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline">Hamilton Hall room 409B, McMaster University</span><br style="font-size:15px; text-align:start">
<span style="font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline">1280 Main Street West, Hamilton, Ontario L8S 4K1, Canada</span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline">EMail:
<a href="mailto:marboeua@mcmaster.ca" target="_blank">marboeua@mcmaster.ca</a></span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline">Tel. +1 (905) 525 9140 ext. 27031</span><br>
</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline"><span style="margin:0px; font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; text-align:left; background-color:rgb(255,255,255)"><span style="margin:0px; font-size:15px; text-align:start; background-color:rgb(255,255,255); display:inline">-------------------------------------------------------------------</span></span><br>
</span></div>
</div>
</div>
</div>
</div>
</blockquote>
</div>
<br clear="all">
<div><br>
</div>
-- <br>
<div dir="ltr" class="x_x_x_gmail_signature">
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>
-- Norbert Wiener</div>
<div><br>
</div>
<div><a href="http://www.cse.buffalo.edu/~knepley/" target="_blank">https://www.cse.buffalo.edu/~knepley/</a><br>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</body>
</html>