<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><br class=""><div> I think the problem comes from the following: </div><div><br class=""></div><div><blockquote type="cite" class=""><div class=""><p class="">-DCUDA_ARCH_FLAGS="-I/usr/local/cuda-11.5/include -arch=sm_61 -DDEBUGlevel=0 -DPRNTlevel=0"</p></div></blockquote>which is ok, the location of the CUDA include files is passed in correctly but when the compile is done inside SuperLU_DIST's make</div><div><br class=""></div><div>cd ~/Downloads/git-files/petsc/mpich-complex-linux-gcc-demo/externalpackages/git.superlu_dist/petsc-build/SRC && /usr/local/cuda-11.5/bin/nvcc -forward-unknown-to-host-compiler -DSUPERLU_DIST_EXPORTS -Dsuperlu_dist_EXPORTS -I~/Downloads/git-files/petsc/mpich-complex-linux-gcc-demo/externalpackages/git.superlu_dist/petsc-build/SRC -isystem=/usr/local/cuda-11.5/include -DUSE_VENDOR_BLAS -allow-unsupported-compiler -Xcompiler -fPIC -O3 -ccbin /opt/intel/oneapi/mpi/2021.5.0/bin/mpicxx -std=c++17 -gencode arch=compute_61,code=sm_61 -Wno-deprecated-gpu-targets -I/opt/intel/oneapi/mpi/2021.5.0/include -O3 -DNDEBUG --generate-code=arch=compute_61,code=[compute_61,sm_61] -Xcompiler=-fPIC -std=c++11 -MD -MT SRC/CMakeFiles/superlu_dist.dir/superlu_gpu_utils.cu.o -MF CMakeFiles/superlu_dist.dir/superlu_gpu_utils.cu.o.d -x cu -dc ~/Downloads/git-files/petsc/mpich-complex-linux-gcc-demo/externalpackages/git.superlu_dist/SRC/superlu_gpu_utils.cu -o CMakeFiles/superlu_dist.dir/superlu_gpu_utils.cu.o</div><div><br class=""></div><div>The </div><div><br class=""></div><div> -I/usr/local/cuda-11.5/include</div><div><br class=""></div><div>has been replaced with </div><div><br class=""></div><div>-isystem=/usr/local/cuda-11.5/include </div><div><br class=""></div><div>and I suspect the nvcc doesn't understand it so it ignores it. I assume somewhere inside the CMAKE processing it is replacing the -I with the -isystem=</div><div><br class=""></div><div>I don't know how one could fix this. I suggest you try installing SuperLU_DIST yourself directly. But I suspect the same problem will appear.</div><div><br class=""></div><div>It is possible that if you do not use the Intel compilers but use for example the GNU compilers the problem may not occur because cmake may not make the transformation.</div><div><br class=""></div><div>Barry</div><div><br class=""></div><div>Googling cmake isystem produces many messages about issues related to isystem and cmake but it would take a life-time to understand them.</div><div><br class=""></div><div><br class=""><blockquote type="cite" class=""><div class="">On Dec 21, 2021, at 2:24 AM, Roland Richter <<a href="mailto:roland.richter@ntnu.no" class="">roland.richter@ntnu.no</a>> wrote:</div><br class="Apple-interchange-newline"><div class="">
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" class="">
<div class=""><p class="">I added/replaced all six lines which are in that commit, getting
<br class="">
</p><p class="">Executing: /usr/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/opt/petsc
-DCMAKE_INSTALL_NAME_DIR:STRING="/opt/petsc/lib"
-DCMAKE_INSTALL_LIBDIR:STRING="lib" -DCMAKE_VERBOSE_MAKEFILE=1
-DCMAKE_BUILD_TYPE=Release
-DCMAKE_C_COMPILER="/opt/intel/oneapi/mpi/2021.5.0/bin/mpicc"
-DMPI_C_COMPILER="/opt/intel/oneapi/mpi/2021.5.0/bin/mpicc"
-DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib
-DCMAKE_C_FLAGS:STRING="-mavx2 -march=native -O3 -fPIC -fopenmp"
-DCMAKE_C_FLAGS_DEBUG:STRING="-mavx2 -march=native -O3 -fPIC
-fopenmp" -DCMAKE_C_FLAGS_RELEASE:STRING="-mavx2 -march=native -O3
-fPIC -fopenmp"
-DCMAKE_CXX_COMPILER="/opt/intel/oneapi/mpi/2021.5.0/bin/mpicxx"
-DMPI_CXX_COMPILER="/opt/intel/oneapi/mpi/2021.5.0/bin/mpicxx"
-DCMAKE_CXX_FLAGS:STRING="-mavx2 -march=native -O3 -fopenmp -fPIC
-std=gnu++17 -fopenmp" -DCMAKE_CXX_FLAGS_DEBUG:STRING="-mavx2
-march=native -O3 -fopenmp -fPIC -std=gnu++17 -fopenmp"
-DCMAKE_CXX_FLAGS_RELEASE:STRING="-mavx2 -march=native -O3
-fopenmp -fPIC -std=gnu++17 -fopenmp"
-DCMAKE_Fortran_COMPILER="/opt/intel/oneapi/mpi/2021.5.0/bin/mpifc"
-DMPI_Fortran_COMPILER="/opt/intel/oneapi/mpi/2021.5.0/bin/mpifc"
-DCMAKE_Fortran_FLAGS:STRING="-mavx2 -march=native -O3 -fPIC
-fopenmp -fallow-argument-mismatch"
-DCMAKE_Fortran_FLAGS_DEBUG:STRING="-mavx2 -march=native -O3 -fPIC
-fopenmp -fallow-argument-mismatch"
-DCMAKE_Fortran_FLAGS_RELEASE:STRING="-mavx2 -march=native -O3
-fPIC -fopenmp -fallow-argument-mismatch"
-DCMAKE_EXE_LINKER_FLAGS:STRING=" -fopenmp -fopenmp"
-DBUILD_SHARED_LIBS:BOOL=ON -DTPL_ENABLE_CUDALIB=TRUE
-DTPL_CUDA_LIBRARIES="-Wl,-rpath,/usr/local/cuda-11.5/lib64
-L/usr/local/cuda-11.5/lib64 -lcudart -lcufft -lcublas -lcusparse
-lcusolver -lcurand -L/usr/local/cuda-11.5/lib64/stubs -lcuda"
-DCUDA_ARCH_FLAGS="-I/usr/local/cuda-11.5/include -arch=sm_61
-DDEBUGlevel=0 -DPRNTlevel=0"
-DCMAKE_CUDA_FLAGS="-allow-unsupported-compiler -Xcompiler -fPIC
-O3 -ccbin /opt/intel/oneapi/mpi/2021.5.0/bin/mpicxx -std=c++17
-gencode arch=compute_61,code=sm_61 -Wno-deprecated-gpu-targets
-I"/opt/intel/oneapi/mpi/2021.5.0/include" "
-DUSE_XSDK_DEFAULTS=YES -DTPL_BLAS_LIBRARIES="-lopenblas
-Wl,-rpath,/usr/local/cuda-11.5/lib64 -L/usr/local/cuda-11.5/lib64
-lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand
-L/usr/local/cuda-11.5/lib64/stubs -lcuda -lm -lstdc++ -ldl
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/lib/release
-L/opt/intel/oneapi/mpi/2021.5.0/lib/release
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/lib
-L/opt/intel/oneapi/mpi/2021.5.0/lib -lmpifort -lmpi -lrt
-lpthread -lgfortran -lm
-Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/11
-L/usr/lib64/gcc/x86_64-suse-linux/11
-Wl,-rpath,/opt/intel/oneapi/vpl/2022.0.0/lib
-L/opt/intel/oneapi/vpl/2022.0.0/lib
-Wl,-rpath,/opt/intel/oneapi/tbb/2021.5.0/lib/intel64/gcc4.8
-L/opt/intel/oneapi/tbb/2021.5.0/lib/intel64/gcc4.8
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/libfabric/lib
-L/opt/intel/oneapi/mpi/2021.5.0/libfabric/lib
-Wl,-rpath,/opt/intel/oneapi/mkl/2022.0.1/lib/intel64
-L/opt/intel/oneapi/mkl/2022.0.1/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/ipp/2021.5.1/lib/intel64
-L/opt/intel/oneapi/ipp/2021.5.1/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/ippcp/2021.5.0/lib/intel64
-L/opt/intel/oneapi/ippcp/2021.5.0/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/dnnl/2022.0.1/cpu_dpcpp_gpu_dpcpp/lib
-L/opt/intel/oneapi/dnnl/2022.0.1/cpu_dpcpp_gpu_dpcpp/lib
-Wl,-rpath,/opt/intel/oneapi/dal/2021.5.1/lib/intel64
-L/opt/intel/oneapi/dal/2021.5.1/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/compiler/2022.0.1/linux/compiler/lib/intel64_lin
-L/opt/intel/oneapi/compiler/2022.0.1/linux/compiler/lib/intel64_lin
-Wl,-rpath,/opt/intel/oneapi/compiler/2022.0.1/linux/lib
-L/opt/intel/oneapi/compiler/2022.0.1/linux/lib
-Wl,-rpath,/opt/intel/oneapi/clck/2021.5.0/lib/intel64
-L/opt/intel/oneapi/clck/2021.5.0/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/ccl/2021.5.0/lib/cpu_gpu_dpcpp
-L/opt/intel/oneapi/ccl/2021.5.0/lib/cpu_gpu_dpcpp
-Wl,-rpath,/usr/x86_64-suse-linux/lib -L/usr/x86_64-suse-linux/lib
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/lib/release
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/lib -lgfortran -lm
-lgcc_s -lquadmath" -DTPL_LAPACK_LIBRARIES="-lopenblas
-Wl,-rpath,/usr/local/cuda-11.5/lib64 -L/usr/local/cuda-11.5/lib64
-lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand
-L/usr/local/cuda-11.5/lib64/stubs -lcuda -lm -lstdc++ -ldl
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/lib/release
-L/opt/intel/oneapi/mpi/2021.5.0/lib/release
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/lib
-L/opt/intel/oneapi/mpi/2021.5.0/lib -lmpifort -lmpi -lrt
-lpthread -lgfortran -lm
-Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/11
-L/usr/lib64/gcc/x86_64-suse-linux/11
-Wl,-rpath,/opt/intel/oneapi/vpl/2022.0.0/lib
-L/opt/intel/oneapi/vpl/2022.0.0/lib
-Wl,-rpath,/opt/intel/oneapi/tbb/2021.5.0/lib/intel64/gcc4.8
-L/opt/intel/oneapi/tbb/2021.5.0/lib/intel64/gcc4.8
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/libfabric/lib
-L/opt/intel/oneapi/mpi/2021.5.0/libfabric/lib
-Wl,-rpath,/opt/intel/oneapi/mkl/2022.0.1/lib/intel64
-L/opt/intel/oneapi/mkl/2022.0.1/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/ipp/2021.5.1/lib/intel64
-L/opt/intel/oneapi/ipp/2021.5.1/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/ippcp/2021.5.0/lib/intel64
-L/opt/intel/oneapi/ippcp/2021.5.0/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/dnnl/2022.0.1/cpu_dpcpp_gpu_dpcpp/lib
-L/opt/intel/oneapi/dnnl/2022.0.1/cpu_dpcpp_gpu_dpcpp/lib
-Wl,-rpath,/opt/intel/oneapi/dal/2021.5.1/lib/intel64
-L/opt/intel/oneapi/dal/2021.5.1/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/compiler/2022.0.1/linux/compiler/lib/intel64_lin
-L/opt/intel/oneapi/compiler/2022.0.1/linux/compiler/lib/intel64_lin
-Wl,-rpath,/opt/intel/oneapi/compiler/2022.0.1/linux/lib
-L/opt/intel/oneapi/compiler/2022.0.1/linux/lib
-Wl,-rpath,/opt/intel/oneapi/clck/2021.5.0/lib/intel64
-L/opt/intel/oneapi/clck/2021.5.0/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/ccl/2021.5.0/lib/cpu_gpu_dpcpp
-L/opt/intel/oneapi/ccl/2021.5.0/lib/cpu_gpu_dpcpp
-Wl,-rpath,/usr/x86_64-suse-linux/lib -L/usr/x86_64-suse-linux/lib
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/lib/release
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/lib -lgfortran -lm
-lgcc_s -lquadmath" -Denable_parmetislib=FALSE
-DTPL_ENABLE_PARMETISLIB=FALSE -DXSDK_ENABLE_Fortran=ON
-Denable_tests=0 -Denable_examples=0
-DMPI_C_COMPILE_FLAGS:STRING="" -DMPI_C_INCLUDE_PATH:STRING=""
-DMPI_C_HEADER_DIR:STRING="" -DMPI_C_LIBRARIES:STRING=""</p><p class="">but the compilation still fails with the same error.<br class="">
</p>
<div class="moz-cite-prefix">Am 20.12.21 um 22:46 schrieb Roland
Richter:<br class="">
</div>
<blockquote type="cite" cite="mid:99ba9ea7-5f70-34a9-58fe-27180096c614@ntnu.no" class="">
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" class=""><p class="">Yes, just checked, I only included the changes above the
comment...</p><p class="">Will test tomorrow, thanks for the help!</p><p class="">Regards,</p><p class="">Roland<br class="">
</p>
<div class="moz-cite-prefix">Am 20.12.2021 um 21:46 schrieb Barry
Smith:<br class="">
</div>
<blockquote type="cite" cite="mid:9E99DFBE-BB73-481B-BBC5-517222080A15@petsc.dev" class="">
<div class=""> Hmm, the fix should now be supplying a
-DCMAKE_CUDA_FLAGS to this cmake command (line 48 at <a href="https://gitlab.com/petsc/petsc/-/merge_requests/4635/diffs" class="moz-txt-link-freetext" moz-do-not-send="true">https://gitlab.com/petsc/petsc/-/merge_requests/4635/diffs</a>)
I do not see that flag being set inside the configure.log so I
am guessing you didn't get the complete fix.</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
</div>
<div class="">Executing: /usr/bin/cmake ..
-DCMAKE_INSTALL_PREFIX=/opt/petsc
-DCMAKE_INSTALL_NAME_DIR:STRING="/opt/petsc/lib"
-DCMAKE_INSTALL_LIBDIR:STRING="lib" -DCMAKE_VERBOSE_MAKEFILE=1
-DCMAKE_BUILD_TYPE=Release
-DCMAKE_C_COMPILER="/opt/intel/oneapi/mpi/2021.5.0/bin/mpicc"
-DMPI_C_COMPILER="/opt/intel/oneapi/mpi/2021.5.0/bin/mpicc"
-DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib
-DCMAKE_C_FLAGS:STRING="-mavx2 -march=native -O3 -fPIC
-fopenmp" -DCMAKE_C_FLAGS_DEBUG:STRING="-mavx2 -march=native
-O3 -fPIC -fopenmp" -DCMAKE_C_FLAGS_RELEASE:STRING="-mavx2
-march=native -O3 -fPIC -fopenmp"
-DCMAKE_CXX_COMPILER="/opt/intel/oneapi/mpi/2021.5.0/bin/mpicxx"
-DMPI_CXX_COMPILER="/opt/intel/oneapi/mpi/2021.5.0/bin/mpicxx"
-DCMAKE_CXX_FLAGS:STRING="-mavx2 -march=native -O3 -fopenmp
-fPIC -std=gnu++17 -fopenmp"
-DCMAKE_CXX_FLAGS_DEBUG:STRING="-mavx2 -march=native -O3
-fopenmp -fPIC -std=gnu++17 -fopenmp"
-DCMAKE_CXX_FLAGS_RELEASE:STRING="-mavx2 -march=native -O3
-fopenmp -fPIC -std=gnu++17 -fopenmp"
-DCMAKE_Fortran_COMPILER="/opt/intel/oneapi/mpi/2021.5.0/bin/mpifc"
-DMPI_Fortran_COMPILER="/opt/intel/oneapi/mpi/2021.5.0/bin/mpifc"
-DCMAKE_Fortran_FLAGS:STRING="-mavx2 -march=native -O3 -fPIC
-fopenmp -fallow-argument-mismatch"
-DCMAKE_Fortran_FLAGS_DEBUG:STRING="-mavx2 -march=native -O3
-fPIC -fopenmp -fallow-argument-mismatch"
-DCMAKE_Fortran_FLAGS_RELEASE:STRING="-mavx2 -march=native -O3
-fPIC -fopenmp -fallow-argument-mismatch"
-DCMAKE_EXE_LINKER_FLAGS:STRING=" -fopenmp -fopenmp"
-DBUILD_SHARED_LIBS:BOOL=ON -DTPL_ENABLE_CUDALIB=TRUE
-DTPL_CUDA_LIBRARIES="-Wl,-rpath,/usr/local/cuda-11.5/lib64
-L/usr/local/cuda-11.5/lib64 -lcudart -lcufft -lcublas
-lcusparse -lcusolver -lcurand
-L/usr/local/cuda-11.5/lib64/stubs -lcuda"
-DCUDA_ARCH_FLAGS="-I/usr/local/cuda-11.5/include -arch=sm_61
-DDEBUGlevel=0 -DPRNTlevel=0" -DUSE_XSDK_DEFAULTS=YES
-DTPL_BLAS_LIBRARIES="-lopenblas
-Wl,-rpath,/usr/local/cuda-11.5/lib64
-L/usr/local/cuda-11.5/lib64 -lcudart -lcufft -lcublas
-lcusparse -lcusolver -lcurand
-L/usr/local/cuda-11.5/lib64/stubs -lcuda -lm -lstdc++ -ldl
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/lib/release
-L/opt/intel/oneapi/mpi/2021.5.0/lib/release
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/lib
-L/opt/intel/oneapi/mpi/2021.5.0/lib -lmpifort -lmpi -lrt
-lpthread -lgfortran -lm
-Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/11
-L/usr/lib64/gcc/x86_64-suse-linux/11
-Wl,-rpath,/opt/intel/oneapi/vpl/2022.0.0/lib
-L/opt/intel/oneapi/vpl/2022.0.0/lib
-Wl,-rpath,/opt/intel/oneapi/tbb/2021.5.0/lib/intel64/gcc4.8
-L/opt/intel/oneapi/tbb/2021.5.0/lib/intel64/gcc4.8
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/libfabric/lib
-L/opt/intel/oneapi/mpi/2021.5.0/libfabric/lib
-Wl,-rpath,/opt/intel/oneapi/mkl/2022.0.1/lib/intel64
-L/opt/intel/oneapi/mkl/2022.0.1/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/ipp/2021.5.1/lib/intel64
-L/opt/intel/oneapi/ipp/2021.5.1/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/ippcp/2021.5.0/lib/intel64
-L/opt/intel/oneapi/ippcp/2021.5.0/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/dnnl/2022.0.1/cpu_dpcpp_gpu_dpcpp/lib
-L/opt/intel/oneapi/dnnl/2022.0.1/cpu_dpcpp_gpu_dpcpp/lib
-Wl,-rpath,/opt/intel/oneapi/dal/2021.5.1/lib/intel64
-L/opt/intel/oneapi/dal/2021.5.1/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/compiler/2022.0.1/linux/compiler/lib/intel64_lin
-L/opt/intel/oneapi/compiler/2022.0.1/linux/compiler/lib/intel64_lin
-Wl,-rpath,/opt/intel/oneapi/compiler/2022.0.1/linux/lib
-L/opt/intel/oneapi/compiler/2022.0.1/linux/lib
-Wl,-rpath,/opt/intel/oneapi/clck/2021.5.0/lib/intel64
-L/opt/intel/oneapi/clck/2021.5.0/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/ccl/2021.5.0/lib/cpu_gpu_dpcpp
-L/opt/intel/oneapi/ccl/2021.5.0/lib/cpu_gpu_dpcpp
-Wl,-rpath,/usr/x86_64-suse-linux/lib
-L/usr/x86_64-suse-linux/lib
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/lib/release
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/lib -lgfortran -lm
-lgcc_s -lquadmath" -DTPL_LAPACK_LIBRARIES="-lopenblas
-Wl,-rpath,/usr/local/cuda-11.5/lib64
-L/usr/local/cuda-11.5/lib64 -lcudart -lcufft -lcublas
-lcusparse -lcusolver -lcurand
-L/usr/local/cuda-11.5/lib64/stubs -lcuda -lm -lstdc++ -ldl
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/lib/release
-L/opt/intel/oneapi/mpi/2021.5.0/lib/release
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/lib
-L/opt/intel/oneapi/mpi/2021.5.0/lib -lmpifort -lmpi -lrt
-lpthread -lgfortran -lm
-Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/11
-L/usr/lib64/gcc/x86_64-suse-linux/11
-Wl,-rpath,/opt/intel/oneapi/vpl/2022.0.0/lib
-L/opt/intel/oneapi/vpl/2022.0.0/lib
-Wl,-rpath,/opt/intel/oneapi/tbb/2021.5.0/lib/intel64/gcc4.8
-L/opt/intel/oneapi/tbb/2021.5.0/lib/intel64/gcc4.8
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/libfabric/lib
-L/opt/intel/oneapi/mpi/2021.5.0/libfabric/lib
-Wl,-rpath,/opt/intel/oneapi/mkl/2022.0.1/lib/intel64
-L/opt/intel/oneapi/mkl/2022.0.1/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/ipp/2021.5.1/lib/intel64
-L/opt/intel/oneapi/ipp/2021.5.1/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/ippcp/2021.5.0/lib/intel64
-L/opt/intel/oneapi/ippcp/2021.5.0/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/dnnl/2022.0.1/cpu_dpcpp_gpu_dpcpp/lib
-L/opt/intel/oneapi/dnnl/2022.0.1/cpu_dpcpp_gpu_dpcpp/lib
-Wl,-rpath,/opt/intel/oneapi/dal/2021.5.1/lib/intel64
-L/opt/intel/oneapi/dal/2021.5.1/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/compiler/2022.0.1/linux/compiler/lib/intel64_lin
-L/opt/intel/oneapi/compiler/2022.0.1/linux/compiler/lib/intel64_lin
-Wl,-rpath,/opt/intel/oneapi/compiler/2022.0.1/linux/lib
-L/opt/intel/oneapi/compiler/2022.0.1/linux/lib
-Wl,-rpath,/opt/intel/oneapi/clck/2021.5.0/lib/intel64
-L/opt/intel/oneapi/clck/2021.5.0/lib/intel64
-Wl,-rpath,/opt/intel/oneapi/ccl/2021.5.0/lib/cpu_gpu_dpcpp
-L/opt/intel/oneapi/ccl/2021.5.0/lib/cpu_gpu_dpcpp
-Wl,-rpath,/usr/x86_64-suse-linux/lib
-L/usr/x86_64-suse-linux/lib
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/lib/release
-Wl,-rpath,/opt/intel/oneapi/mpi/2021.5.0/lib -lgfortran -lm
-lgcc_s -lquadmath" -Denable_parmetislib=FALSE
-DTPL_ENABLE_PARMETISLIB=FALSE -DXSDK_ENABLE_Fortran=ON
-Denable_tests=0 -Denable_examples=0
-DMPI_C_COMPILE_FLAGS:STRING="" -DMPI_C_INCLUDE_PATH:STRING=""
-DMPI_C_HEADER_DIR:STRING="" -DMPI_C_LIBRARIES:STRING=""</div>
<div class=""><br class="">
</div>
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<div class="">On Dec 20, 2021, at 2:59 PM, Roland Richter
<<a href="mailto:roland.richter@ntnu.no" class="moz-txt-link-freetext" moz-do-not-send="true">roland.richter@ntnu.no</a>>
wrote:</div>
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<div class=""><p class="">I introduced the changes from that patch
directly, without checking out. Is that insufficient?</p><p class="">Regards,</p><p class="">Roland<br class="">
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<div class="moz-cite-prefix">Am 20.12.2021 um 20:38
schrieb Barry Smith:<br class="">
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Are you sure you have the correct PETSc branch? From
configure.log it has
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<div class=""> Defined "VERSION_GIT" to
""v3.16.2-466-g959e1fce86""</div>
<div class=""> Defined "VERSION_DATE_GIT"
to ""2021-12-18 11:17:24 -0600""</div>
<div class=""> Defined
"VERSION_BRANCH_GIT" to ""master""</div>
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<div class="">It should have balay/slu-without-omp-3
for the branch.</div>
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<div class="">On Dec 20, 2021, at 10:50 AM,
Roland Richter <<a href="mailto:roland.richter@ntnu.no" class="moz-txt-link-freetext" moz-do-not-send="true">roland.richter@ntnu.no</a>>
wrote:</div>
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<div class=""><p class="">In that case it fails with</p><p class=""><i class="">~/Downloads/git-files/petsc/mpich-complex-linux-gcc-demo/externalpackages/git.superlu_dist/SRC/cublas_utils.h:22:10:
fatal error: cublas_v2.h: No such file
or directory</i></p><p class="">even though this header is
available. I assume some header paths are
not set correctly?</p><p class="">Thanks,</p><p class="">regards,</p><p class="">Roland<br class="">
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<div class="moz-cite-prefix">Am 20.12.21 um
16:29 schrieb Barry Smith:<br class="">
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Please try the
branch balay/slu-without-omp-3 It is in
MR <a href="https://gitlab.com/petsc/petsc/-/merge_requests/4635" class="moz-txt-link-freetext" moz-do-not-send="true">https://gitlab.com/petsc/petsc/-/merge_requests/4635</a>
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<div class="">On Dec 20, 2021, at
8:14 AM, Roland Richter <<a href="mailto:roland.richter@ntnu.no" class="moz-txt-link-freetext" moz-do-not-send="true">roland.richter@ntnu.no</a>>
wrote:</div>
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<div class=""><p class="">Hei,</p><p class="">I tried to combine
CUDA with superlu_dist in
petsc using the following
configure-line:</p><p class=""><i class="">./configure
PETSC_ARCH=mpich-complex-linux-gcc-demo
--CC=/opt/intel/oneapi/mpi/2021.5.0/bin/mpicc
--CXX=/opt/intel/oneapi/mpi/2021.5.0/bin/mpicxx
--FC=/opt/intel/oneapi/mpi/2021.5.0/bin/mpifc --CFLAGS="-mavx2
-march=native -O3"
--CXXFLAGS="-mavx2
-march=native -O3"
--FFLAGS="-mavx2
-march=native -O3"
--CUDAFLAGS=-allow-unsupported-compiler
--CUDA-CXX=g++
--prefix=/opt/petsc
--with-blaslapack=1
--with-mpi=1
--with-scalar-type=complex
--download-suitesparse=1
--with-cuda
--with-debugging=0
--with-openmp
--download-superlu_dist
--force</i></p><p class="">but the
configure-step fails with
several errors correlated with
CUDA and superlu_dist, the
first one being</p><p class=""><i class="">cublas_utils.c:21:37:
error: ‘CUDART_VERSION’
undeclared (first use in
this function); did you mean
‘CUDA_VERSION’?</i><i class=""><br class="">
</i><i class=""> 21 |
printf("CUDA version: v
%d\n",CUDART_VERSION);</i><i class=""><br class="">
</i><i class="">
|
^~~~~~~~~~~~~~</i><i class=""><br class="">
</i><i class="">
|
CUDA_VERSION</i></p><p class="">Compiling
superlu_dist separately works,
though (including CUDA).</p><p class="">Is there a bug
somewhere in the
configure-routine? I attached
the full configure-log.<br class="">
</p><p class="">Thanks!</p><p class="">Regards,</p><p class="">Roland<br class="">
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