Executing: uname -s stdout: Linux ================================================================================ ================================================================================ Starting configure run at Fri, 27 Aug 2021 16:23:21 -0400 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-cc=/gpfs/alpine/world-shared/phy122/lib/install/summit/kokkos/nvhpc21.7/bin/nvcc_wrapper --with-cxx=/gpfs/alpine/world-shared/phy122/lib/install/summit/kokkos/nvhpc21.7/bin/nvcc_wrapper --with-fc=/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/spectrum-mpi-10.4.0.3-20210112-nv7jd363ym3n4zpgornfbq6bh4tqjyak/bin/mpifort COPTFLAGS="-g -fast" CXXOPTFLAGS="-g -fast" FOPTFLAGS="-g -fast" CUDAFLAGS="-ccbin nvc++" --with-ssl=0 --with-batch=0 --with-mpiexec="jsrun -g 1" --with-cuda=0 --with-cudac=/gpfs/alpine/world-shared/phy122/lib/install/summit/kokkos/nvhpc21.7/bin/nvcc_wrapper --with-cuda-gencodearch=70 --download-metis --download-parmetis --with-x=0 --with-debugging=0 PETSC_ARCH=arch-summit-opt-nvhpc --prefix=/gpfs/alpine/world-shared/phy122/lib/install/summit/petsc/current/opt-nvhpc21.7b Working directory: /gpfs/alpine/csc314/scratch/adams/petsc Machine platform: uname_result(system='Linux', node='login2', release='4.18.0-193.46.1.el8_2.ppc64le', version='#1 SMP Thu Feb 18 09:47:51 EST 2021', machine='ppc64le', processor='ppc64le') Python version: 3.8.3 (default, Jul 2 2020, 16:32:18) [GCC 7.3.0] ================================================================================ Environmental variables 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CMAKE_PREFIX_PATH=/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/hdf5-1.10.7-nfhjvzsshg5qihqv44y5ji6ihsqpd73v:/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/spectrum-mpi-10.4.0.3-20210112-nv7jd363ym3n4zpgornfbq6bh4tqjyak:/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/netlib-lapack-3.9.1-b5iqtudpwjumes5gsdol3bzsh7qlv7mf:/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/gcc-8.3.1/cmake-3.20.2-5h4momgjnhes6fukxf3476n7qgkazefi GIT_PS1_SHOWDIRTYSTATE=1 SSH_CLIENT=68.40.185.15 55250 22 LMOD_VERSION=8.4 CUDA_TOOLKIT_ROOT_DIR=/sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/cuda OPAL_PREFIX=/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/spectrum-mpi-10.4.0.3-20210112-nv7jd363ym3n4zpgornfbq6bh4tqjyak DIM=3 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OLCF_HDF5_ROOT=/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/hdf5-1.10.7-nfhjvzsshg5qihqv44y5ji6ihsqpd73v _ModuleTable_Sz_=9 __LMOD_REF_COUNT_CPATH=/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/hdf5-1.10.7-nfhjvzsshg5qihqv44y5ji6ihsqpd73v/include:1;/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/spectrum-mpi-10.4.0.3-20210112-nv7jd363ym3n4zpgornfbq6bh4tqjyak/include:1;/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/netlib-lapack-3.9.1-b5iqtudpwjumes5gsdol3bzsh7qlv7mf/include:1;/sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/comm_libs/nvshmem/include:1;/sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/comm_libs/nccl/include:1;/sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/math_libs/include:1;/sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/cuda/include:1 OMPI_FORTMOD=PGI OLCF_SPECTRUM_MPI_ROOT=/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/spectrum-mpi-10.4.0.3-20210112-nv7jd363ym3n4zpgornfbq6bh4tqjyak XLSF_UIDDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.11/linux3.10-glibc2.17-ppc64le-csm/lib/uid LMOD_FAMILY_COMPILER=nvhpc OMPI_FC=nvfortran NVHPC=/sw/summit/nvhpc_sdk/rhel8 OLCF_LMOD_ROOT=/sw/summit PROJWORK=/gpfs/alpine/proj-shared OLCF_NVHPC_ROOT=/sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7 OLCF_PYTHON_ANACONDA3_ROOT=/sw/summit/python/3.8/anaconda3/2020.07-rhel8 SHLVL=1 PYTHONPATH=/sw/summit/xalt/1.2.1/site:/sw/summit/xalt/1.2.1/libexec ACLOCAL_PATH=/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/gcc-8.3.1/cmake-3.20.2-5h4momgjnhes6fukxf3476n7qgkazefi/share/aclocal XL_LINKER=/sw/summit/xalt/1.2.1/bin/ld MANPATH=/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/spectrum-mpi-10.4.0.3-20210112-nv7jd363ym3n4zpgornfbq6bh4tqjyak/share/man:/sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/compilers/man:/sw/summit/python/3.8/anaconda3/2020.07-rhel8/share/man:/sw/sources/hpss/man:/sw/summit/lmod/8.4/share/man:/opt/ibm/spectrumcomputing/lsf/10.1.0.11/man::/opt/puppetlabs/puppet/share/man LSF_LIBDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.11/linux3.10-glibc2.17-ppc64le-csm/lib CUDA_DIR=/sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/cuda F90=/sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/compilers/bin/nvfortran PAMI_CUDA_AWARE_THRESH=320000 MODULEPATH=/sw/summit/spack-envs/base/modules/spack/linux-rhel8-ppc64le/spectrum-mpi/10.4.0.3-20210112-nv7jd36/nvhpc/21.7:/sw/summit/nvhpc_sdk/rhel8/site-modulefiles:/sw/summit/spack-envs/base/modules/spack/linux-rhel8-ppc64le/nvhpc/21.7:/sw/summit/spack-envs/base/modules/spack/linux-rhel8-ppc64le/Core:/sw/summit/spack-envs/base/modules/site/Core:/sw/summit/modulefiles/core OMPI_CC=nvc OLCF_HSI_ROOT=/sw/sources/hpss LOGNAME=adams DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/62983/bus XALT_OLCF=1 XDG_RUNTIME_DIR=/run/user/62983 MODULEPATH_ROOT=/sw/summit/modulefiles PYTHONUSERBASE=/ccs/home/adams/.local/summit/anaconda3/2020.07/3.8 PAMI_IBV_ENABLE_OOO_AR=1 LMOD_MPI_NAME=spectrum-mpi PATH=/sw/summit/xalt/1.2.1/bin:/sw/sources/lsf-tools/2.0/summit/bin:/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/hdf5-1.10.7-nfhjvzsshg5qihqv44y5ji6ihsqpd73v/bin:/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/spectrum-mpi-10.4.0.3-20210112-nv7jd363ym3n4zpgornfbq6bh4tqjyak/bin:/sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/compilers/bin:/sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/cuda/bin:/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/gcc-8.3.1/cmake-3.20.2-5h4momgjnhes6fukxf3476n7qgkazefi/bin:/sw/summit/python/3.8/anaconda3/2020.07-rhel8/bin:/sw/summit/forge/21.0.3/bin:/sw/sources/hpss/bin:/opt/ibm/spectrumcomputing/lsf/10.1.0.11/linux3.10-glibc2.17-ppc64le-csm/etc:/opt/ibm/spectrumcomputing/lsf/10.1.0.11/linux3.10-glibc2.17-ppc64le-csm/bin:/opt/ibm/csm/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibm/flightlog/bin:/opt/ibm/jsm/bin:/opt/puppetlabs/bin:/usr/lpp/mmfs/bin _LMFILES_=/sw/summit/spack-envs/base/modules/site/Core/lsf-tools/2.0.lua:/sw/summit/spack-envs/base/modules/site/Core/hsi/5.0.2.p5.lua:/sw/summit/modulefiles/core/xalt/1.2.1.lua:/sw/summit/spack-envs/base/modules/site/Core/DefApps.lua:/sw/summit/modulefiles/core/forge/21.0.3:/sw/summit/spack-envs/base/modules/site/Core/python/3.8-anaconda3.lua:/sw/summit/spack-envs/base/modules/spack/linux-rhel8-ppc64le/Core/cmake/3.20.2.lua:/sw/summit/nvhpc_sdk/rhel8/site-modulefiles/cuda/nvhpc.lua:/sw/summit/spack-envs/base/modules/site/Core/nvhpc/21.7.lua:/sw/summit/spack-envs/base/modules/spack/linux-rhel8-ppc64le/nvhpc/21.7/netlib-lapack/3.9.1.lua:/sw/summit/spack-envs/base/modules/spack/linux-rhel8-ppc64le/nvhpc/21.7/spectrum-mpi/10.4.0.3-20210112.lua:/sw/summit/spack-envs/base/modules/spack/linux-rhel8-ppc64le/spectrum-mpi/10.4.0.3-20210112-nv7jd36/nvhpc/21.7/hdf5/1.10.7.lua OLCF_FAMILY_COMPILER=nvhpc PS1=\A\[\033[;1m\]\[\033[35m\]$(ret=$?; [ $ret -ne 0 ] && echo -n " $ret")\[\033[;0m\] \[\033[34m\]$(__git_ps1 '%s') \[\033[32m\]\w\[\033[0m\]\$ MODULESHOME=/sw/summit/lmod/8.4 PKG_CONFIG_PATH=/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/netlib-lapack-3.9.1-b5iqtudpwjumes5gsdol3bzsh7qlv7mf/lib64/pkgconfig LMOD_SETTARG_FULL_SUPPORT=no PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc XALT_ETC_DIR=/sw/summit/xalt/1.2.1/etc HISTSIZE=100 LMOD_PKG=/sw/summit/lmod/8.4 USE_PETSC=TRUE CPP=cpp _ModuleTable005_=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 LMOD_CMD=/sw/summit/lmod/8.4/libexec/lmod WORLDWORK=/gpfs/alpine/world-shared MPI_ROOT=/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/spectrum-mpi-10.4.0.3-20210112-nv7jd363ym3n4zpgornfbq6bh4tqjyak CVS_RSH=ssh OMP_NUM_THREADS=1 LESSOPEN=||/usr/bin/lesspipe.sh %s OLCF_NETLIB_LAPACK_ROOT=/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/netlib-lapack-3.9.1-b5iqtudpwjumes5gsdol3bzsh7qlv7mf LMOD_DIR=/sw/summit/lmod/8.4/libexec LMOD_FAMILY_MPI=spectrum-mpi BASH_FUNC_module%%=() { eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh) } BASH_FUNC_ml%%=() { eval $($LMOD_DIR/ml_cmd "$@") } _=/ccs/home/adams/arch-summit-opt-nvhpc.py LC_CTYPE=C.UTF-8 Files in path provided by default path /sw/summit/xalt/1.2.1/bin: jsrun ld xalt_helper_functions.sh /sw/sources/lsf-tools/2.0/summit/bin: bsub bjob showusage test_bsub /sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/hdf5-1.10.7-nfhjvzsshg5qihqv44y5ji6ihsqpd73v/bin: h5pcc h5redeploy mirror_server mirror_server_stop h5diff ph5diff h5ls 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ib_write_lat ldapcompare lprm.cups which msginit toe unlink ppc64le-redhat-linux-g++ c++ g++ ppc64le-redhat-linux-c++ shasum ghostscript diff3 run-singularity dcgmi ibdiagpath cronnext pmfind free gpg-zip secret-tool tcsh mconfig gpgv2 jdb pmpython allneeded sgen-grep-binprot icewmhint pinky rmid iio_event_monitor ebrowse lsblk xmlwf memhog ruby eu-findtextrel dislocate vncviewer delv less ibdev2netdev lsmem systemd-ask-password kpsereadlink lstopo-no-graphics bzcat python2-config cat ngettext gtk-query-immodules-3.0-64 apropos dimax_init linux64 mstcongestion gdb-add-index who dviluatex xwud pstack ldapmodrdn bzgrep ucx_read_profile ionice bison rmic mktexpk ppc32 ranlib perl5.26.3 perl jhat guile slabtop x11perf systemd-cgtop zstdcat wait catman xauth luatex53 systemd-cat xpath cancel bg env gst-stats-1.0 xkill pmlc numactl tnameserv pmdbg at Xvnc flint_ext strings soapsuds gstack msgcmp unversioned-python mkofm ssh-keygen sdiff HEAD ib_send_lat mkfontdir mysqlbinlog dbus-daemon 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captoinfo pax rstream jps ps systemd-cgls db_tuner systemd-inhibit [ ul semodule_unpackage snice rpmspec wc ld timed-read ibdiagnet lwp-download guile2-tools git-upload-archive updmap xvidtune last mlxprivhost top pmdumplog scriptreplay mstprivhost quotasync chgrp touch updmap-user neqn fc-cat xmag msgen mono-package-runtime pack200 hsdb mount md5sum sudoreplay ps2ps pslog gmake autom4te jfr brotli fmtutil-user dircolors newuidmap sha256sum pre-grohtml run-on-binaries-in resolvectl tsort getconf eu-elflint texlua db_log_verify fc-scan getopt pmie2col vi tload ibv_task_pingpong atrm gettext ncursesw6-config dc db_archive rdma_client xorg-x11-fonts-update-dirs fonttosfnt dnf etex aplaymidi mcookie jar nslookup setxkbmap fincore ipmitool mlxdump hwloc-ls realpath ps2ascii ksh policytool mlxmcg pdftex lpstat read dbus-send perldoc jdeps jstatd kpsexpand enchant-lsmod-2 lwp-mirror mailq tclsh8.6 gnuplot kpsepath modulemd-validator-v1 pip3.6 sort encguess fgrep eu-readelf numastat shcomp 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dconf mlnx_get_vfs.pl domainname systemd-tmpfiles strace-log-merge vncserver_wrapper ibv_rc_pingpong python2.7 sleep cmtime pwdx spell lpunlock eject mdevices_info ifnames sha224sum koi8rxterm sed getopts xlogo mlxuptime newaliases.postfix aseqnet ulimit dirmngr-client systemd-firstboot guild icesound xargs python2.7-config pcre-config qperf eu-make-debug-archive newaliases chage mysqlaccess bzdiff isosize mstmwrite expr pwmake systemd-escape wish8.6 xsetroot ibnlparse lstopo lessecho autoreconf orbd clear gctags vncpasswd icewm-session atq mysqlimport rpmkeys xxd xhost ibv_asyncwatch wsgen sotruss mstflint run_perftest_loopback watch msgfilter systemd-hwdb lastlog ldapdelete gdbm_dump test mst_ib_add zipcloak rsyslog-recover-qi.pl unix2dos groff shred unzstd itrace xmlcatalog glxinfo texhash systemd-machine-id-setup grub2-script-check base32 flint ibdiagnet_csv2xml.py iecset hwloc-annotate eps2eps hardened autoscan bzfgrep newgidmap grotty colrm bash glib-gettextize yes epstopdf gpgparsemail spax pr kill bzcmp mlxdump_ext pkgconf ypmatch ibv_ud_pingpong w logname ksh93 od xmodmap gpic pmlogsize axfer p11-kit m17n-conv bzip2 timedatectl gresource rping infocmp unmunge pydoc3.6 nl users minit idlj xstdcmap msgmerge csharp git-shell mft_uninstall.sh gdk-pixbuf-thumbnailer lpq glib-genmarshal quota hca_self_test.ofed id stty update-ca-trust mlxconfig setreg xzfgrep mv fipscheck ftp-rfc disco sqlsharp join xsetpointer ppc rlogin-cwd vimdiff lchfn tr chacl echo netstat texlinks rpcbind strip xdg-settings mstdump mkpasswd mlxphyburn fips-mode-setup ps2pdf12 jstat libwacom-list-local-devices gpgv alt-java eu-strings eu-elfcmp jobs zfgrep g13 systemd-delta update-gtk-immodules glib-compile-resources pic mlx_fpga dotlockfile gobject-query redhat_lsb_init Xorg sftp emacsclient raw_ethernet_lat zless msgexec false nvidia-cuda-mps-control oclock dnsdomainname javac pcp mail fwtrace xdpr awk dnf-3 grub2-mkpasswd-pbkdf2 gprof xkibitz rcopy passmass pod2latex freetype-config bzip2recover guile2 x0vncserver yum pcp2csv otfview znew mstmread dirmngr aplay gvim ldapmodify nv-hostengine mariadb_config javap WebKitWebDriver pango-view preunzip enchant-2 ibsim sss_ssh_authorizedkeys hostid mcra zdiff pathchk /usr/local/sbin: /usr/sbin: rhnsd rhn_check rhn_check-3.6 rhn-profile-sync rhn-profile-sync-3.6 subscription-manager pifconfig pethtool syspurpose userhelper virt-what nft xtables-nft-multi xtables-monitor iptables-translate iptables-save iptables-restore-translate iptables-restore iptables-apply iptables ip6tables-translate ip6tables-save ip6tables-restore-translate ip6tables-restore ip6tables atopacctd abrt-install-ccpp-hook abrt-dbus abrt-configuration abrtd abrt-server abrt-auto-reporting vgcfgrestore selabel_digest resize2fs luserdel bootlist fdisk thin_trim e4defrag tracepath pwhistory_helper mkdumprd mke2fs mkfs.ext2 mkfs.ext3 mkfs.ext4 badblocks nsec3hash mii-diag lpc lgroupmod rpc.statd lsdevinfo tsig-keygen ibfindnodesusing.pl ifup ibdiscover.pl load_policy rtcwake thin_repair usermod xfs_freeze lvs xfs_mdrestore plipconfig rfkill groupmod fsck.xfs lsvpd unix_update readprofile vgreduce losetup update-alternatives rtas_event_decode dnssec-settime selabel_lookup_best_match cracklib-check partx agetty pvdisplay vmcore-dmesg show_irq_affinity_hints.sh kexec cracklib-unpacker dnssec-checkds lsprop thin_dump alternatives vendor_pre_uninstall.sh yppoll swaplabel grub2-set-password lvchange blockdev ibdatacounts useradd zdump alsa-info.sh lparstat ctrlaltdel grub2-set-default smpdump ss swapoff ping swapon zic ipmaddr sldd.sh iconvconfig ibhosts dmsetup lid chcpu cache_dump ibchecknode ibroute depmod vgremove pseries_platform nvme getpcaps lscfg cache_repair xfs_logprint postlock serv_config e2mmpstatus dumpe2fs nvram udevadm parted lsmod sestatus dnssec-keygen named-compilezone fsck.minix rpcinfo pmc groupmems srp_daemon.sh grub2-set-bootflag pwunconv routel postqueue ls-vdev lpasswd sysctl e2freefrag dmstats capsh sendmail mlnx_bf_configure xfs_db isc-hmac-fixup pam_timestamp_check grub2-install chpasswd lvdisplay hwstamp_ctl lnewusers zramctl yptest quotacheck ibdatacounters lvcreate vgmknodes fixfiles set_irq_affinity_cpulist.sh lspci blkdeactivate postlog fsck lsslot xfs_quota rdisc update_flash_nv srp_daemon grub2-reboot bridge saquery ibswitches addpart smpquery sss_cache clockdiff ypset runlevel blkzone tipc sssd build-locale-archive nfsidmap atrun dnssec-keyfromlabel postcat odp_stat.sh lvconvert e2fsck fsck.ext2 fsck.ext3 fsck.ext4 rtstat ibprintrt.pl ifconfig era_dump xfs_growfs sminfo lvmsadc ibclearcounters dmfilemapd restorecon thin_ls chgpasswd ldattach grpconv vendor_post_uninstall.sh nvsetenv era_check connectx_port_config postconf delpart vpdupdate era_restore avcstat munged snmpd mountstats mklost+found lvmsar ls-veth snmptrapd route ibsrpdm ibstat phc2sys dnssec-coverage lvresize cracklib-packer fsck.nfs irqbalance logrotate xfs_rtcp ibcacheedit genhomedircon genl fix-info-dir exportfs xfs_bmap grpck alsactl cache_writeback newusers selabel_partial_match makedumpfile show_gids mlnx_affinity ofed_uninstall.sh vgexport lvmdump nslcd pvresize partprobe set_irq_affinity_bynode.sh show_irq_affinity.sh dump_fts errinjct matchpathcon fdformat vgextend fsfreeze ofpathname nfsconvert pwck xfs_spaceman dhclient postdrop sendmail.postfix vgcfgbackup sulogin lpc.cups xfs_info ypbind nameif nstat fuse2fs mkfs.cramfs sim_server activate_firmware nfsstat opensm gssproxy ibaddr mkfs.xfs groupadd halt osmtest lvmpolld lsmcode pvs lvremove start-statd debugfs setpci selinuxexeccon ibportstate rtmon ibcheckerrors vgimportclone e2label tune2fs rtas_dump postfix lnstat dump_mfts.sh thin_restore check_lft_balance.pl ibidsverify.pl cma_roce_tos selabel_lookup rmmod cache_metadata_size nsm run_srp_daemon runuser xfs_metadump getcap sefcontext_compile ip fsadm iblinkinfo.pl ibqueryerrors.pl setfiles sys_ident dhclient-script tracepath6 findfs getsebool e2image blkdiscard uuserver ifcfg restorecon_xattr shutdown smtp-source install-info set_nodedesc.sh grub2-probe xfs_repair rsyslogd rpcdebug grub2-ofpathname lvm mkhomedir_helper pvscan logsave pwconv unsquashfs e2undo rdma blkmapd vgscan nfsref mlnx-sf umount.nfs ibcheckerrs rpc.nfsd iblinkinfo ibtracert cfdisk common_irq_affinity.sh modinfo sasldblistusers2 rtpr g13-syshelp selinuxconlist blkid ibclearerrors xqmstats vgsplit postsuper grub2-rpm-sort thin_check filefrag adduser redhat_lsb_trigger.ppc64le dump_lfts.sh drmgr selinux_check_access cache_check named-checkzone crond pvchange resolvconf vendstat e4crypt setenforce addgnupghome reboot vipw ddns-confgen rpc.gssd cracklib-format perfquery pivot_root create-cracklib-dict quotaon groupdel ptp4l mkfs xfs_estimate dmeventd gss-server usernetctl show_counters xfs_ncheck vgchange grpunconv grub2-mkconfig quotastats iptunnel dkms resizepart sysctl_perf_tuning xfs_mkfile repquota lusermod wipefs grub2-get-kernel-settings dnssec-revoke sshd ifdown cache_restore dnssec-dsfromkey arp grub2-setpassword pvremove clock ldconfig selinuxdefcon lvreduce vigr quot vgdisplay lchage arping ibacm ibcheckportstate smparquery insmod ibprintca.pl switch_root hwclock ifstat sysinfo-snapshot.py setsebool edquota pidof anacron service sfdisk vgimport vgrename sm-notify lvmdiskscan lvscan selinuxenabled nologin atd accessdb grub2-switch-to-blscfg ibcheckstate userdel lsvio ibnodes weak-modules quotaoff setquota era_invalidate automount xfs_copy sosreport consoletype phc_ctl ppc64_cpu uesensor rpc.mountd ls-vscsi ibsysstat modprobe ibstatus lgroupadd vgs rtacct pdata_tools telinit setup_mr_cache.sh poweroff slattach visudo ibcheckportwidth genrandom update-pciids nscd update_flash smtp-sink mkswap lvmconfig xfs_admin ctstat lvrename ibmirror chkconfig pam_console_apply xfs_io ib2ib_setup nfsdcltrack mksquashfs umount.nfs4 arpd yp_dump_binding rtas_ibm_get_vpd setcap rtas_dbg chroot ibqueryerrors grubby timemaster ibchecknet installkernel vgmerge rpc.idmapd create-munge-key routef mount.nfs pvmove postmulti ibnetdiscover dnssec-keymgr key.dns_resolver request-key alsabat-test.sh genhostid ibswportwatch.pl postmap init ibprintswitch.pl ether-wake ifenslave fstrim xfs_fsr lgroupdel vgcreate mount.nfs4 ethtool fsck.cramfs postalias lvextend vgconvert saslpasswd2 mkfs.minix dnssec-signzone cma_roce_mode dnssec-verify ibcheckwidth thin_metadata_size faillock nfsconf paperconfig thin_rmap ibcheckport pvck postkick ibrouters pvcreate vgck rpcbind ping6 opal-prd thin_delta mii-tool showmount ibccquery devlink set_irq_affinity.sh ibping nfsiostat mlnx_tune hvcsadmin unix_chkpwd getenforce luseradd dnssec-importkey set_poweron_time semodule convertquota applygnupgdefaults fuser ibccconfig compat_gid_gen /opt/ibm/flightlog/bin: decoder /opt/ibm/jsm/bin: jsrun jswait pevent jskill query_env pmix_info export_slurm_env plookup jsm_simulator jsm_is_server_ready js_task_info jsinfo admin jsproxy jslist export_smpi_env jsm pps stock /opt/puppetlabs/bin: hiera facter puppet facter-ng.bat /usr/lpp/mmfs/bin: mmtrace mmsysmon.py mmnfsfuncs mmcesnfsmonitor mmjob mmdelcallback tsdf tschfileset tslsdisk tslspolicy tslsfs tsdelsnapshot tslsfileset tsnsdaccess tscrsnapshot tslspool tssnapdir tsedquota tsusercmd tslssnapshot tsstatus mmcrnsd tsgetscsiinfo mmqosnice mmsetquota mmdelfileset tsprpreemptabort cleanupkeystonedb mmsdrfsdef.Linux mmcesuserauthcrservice mmdumpfilocks tschdisk tsaddpdisk tsctl tskafkaauth tsdbfs tscheckquota tsfsctl tsrpldisk tschpdisk tsrecgroupserver tscmd tsreclaimspace tscrrecgroup tschstoragepool tsrestripefs tsdefragfs tsfileid tsdsh tsdeldisk tsquotaon tschfs tsdefedquota tsunmount tsdelpdisk tsressnapshot tscrvdisk tsquotaoff tsexpelnode tslsvdisk tscrfs tschmgr tslsrecgroup tslsrecoverygroupevents tsdelvdisk tsnsddiscover tsdefquotaoff tscrfileset tsdelfs tsdbvdisk tsdelfileset tsadddisk tscachectl tsdefquotaon tschcarrier tsauth tslsqos tslspdisk tsnsdrediscover tsremount tsdelrecgroup tschpool tsrepquota tschqos tschrecgroup tsfsck tsdiag tssbrff mmlsfileset mmexectsmcmd mmgetkafkaspecinfo mmfs mmchconfig ces.snap.py mmperfmon tsgetacl clstrwatchcallbacks mmcessmblsconfig tslsattr mmcesmonitord .links mmnfsgrace mmhelp-apolicy mmpmon mmcesnfsdelexport mmchpolicy gui.snap.py tspcache perfmon.snap.py mmsdrquerydef mmlsqos mmxargs tschattr mmclidecode clstrwatchconsumermanager mmfsctl mmpsnap mmccrnv perf.snap.py mmcespnfsip mmnfsnodeback tsimgrestore mmcesuserauthckservice mmchnodeclass pymmcesnfslsexport.py mmdelacl mmumount mmcrnodeclass mmsysmonc tspcacheevict mmexecvfile sshwrap mmgetifconf mmfs-ppc64-rh4 sysmon.snap.py mmimgrestore mmcesobjaccesslinkfset mmchecksubsys nfsdebug.snap.py mmcesop tspmon mmdefedquota mmdelsnapshot mmreclaimspace mmsysmoncontrol tsspectrumdiscover mmyfields mmchnode mmrestorefs bsshwrap mmcallhome mmexportfs mmcesnfsloadexport tslspool34 mmnfsmonitor mmsnmpagentd30 tsfindinode mmfsfuncs.Linux mmdumpperfdata mmcesobjcrbase mmdsh objmetric_count.py mmauditmount mmcessmblsexport mmdevdiscover mmlsnode mmautoload mmcesnfscrexport mmchnsd mmfileid mmcesnfsfuncs mmcesrecovernode mmsklmconfig mmlsfs mmcollectdebugdata tseditacl bsshscpwrap tsbuhelper tslinkfileset tspreparedisk mmrpldisk mmdelnode mmceslog mmcrfsc mmcesblockfuncs mmgensymtable mmfsd mmnfsinstall mmdspmsg mmclone mmchfs mmlsdisk mmnfstakeover tsyselect mmnfsup mmcessmbcrexport tsaddrmap mmnetverify mmchpool msgqueue.snap.py mmcesobjlscfg tsrestorefileset mmbuildgpl mmsmbman tsfindname mmcesloadmonitor mmcesobjaccess mmaddcallback mmcesobjpolicyfuncs mmcessmbdelexport msgqueueDaemonManager core.snap.py tsgskkm mmauth mmedquota mmshutdown tsdbmemleakparse mmadquery mmsdrcli mmccr mmcesobjchstoragepolicy mmcesnfschcfg tswatchmonitor mmmigratefs mmputacl mmlscluster commonsnap.py mmcesservice mmadddisk tslsmgr tssbrindex mmafmlocal mmlsperfdata mmnfsuninstall mmcmi mmcesobjs3 tspcachescan mmlsnsd mmchcluster mmunmount mmnfsquorumloss mmcesnetdeladdress mmlsquota mmces pymmcesnfsfuncs.py tsputacl mmchqos tsprshowfence gpfsrunlevel copyutil mmimgbackup mmsdrrestore tsqosnice mmsdrserv mmmsgqueue mmcesmmcdelexport mmlinkfileset mmrestoreconfig mmdelnodeclass mmsmbfuncs mmcesobjcfgman mmfixcfg mmcesnfslsexport tsdbmemleak mmaudit mmcesnfslscfg mmsmbsupportedoptions mmafmconfig mmlscallback mmlsmgr tsbackup mmcesminfuncs mmfsmount mmcesmmcchexport tsrestripefile kdump mmimportfs mmcesobjcrring mmnfs mmcommon mmcesnetmvaddress mmsnmpagentd mmcesobjfuncs gui.callhome.py tsbackup33 lxtrace mmsdrfsdef mmsmb mmobj tsprclear mmceshdfsfuncs mmcesnetworkmonitor tspcacheutil mmqos mmlspolicy mmrestripefs lxtrace-4.18.0-193.46.1.el8_2.ppc64le mmcessmbfuncs mmaddnode mmblock mmcrfs mmmount tsprreadres tssklmconfig mmnsddiscover mmprotocoltrace mmglobfuncs tsprreadkeys mmnfsdown gpfs.snap object.snap.py mmcesnetaddaddress mmcesobjchcfg mmrsh mmcesobjmr mmeditacl auditConsumerManager mmlsconfig mmsync mmgetacl mmcesuserauthrmservice mmhealth tsdelacl mmremote mmpercentencode mmcloudfuncs daemonize mmcesnfschexport tsclone callhome.snap.py clstrwatchreplaymanager tsnetverify mmstartup mmcachectl mmgskkm mmdefragfs mmsnapdir tsapolicy mmrcmd mmexpelnode mmsdrquery ece.callhome.py tscp mmchdisk mmcesnetdown mmlslicense mmrestripefile mmcrfileset mmnfscleanup mmlogmsg mmcessmbexportacl mmchlicense mmsetrcmd tsclwatchrules mmdynamicmap tssetquota tsprreserve wftopics mmvaryonvg mmsnmpagentd10 mmbackupconfig mmdefquotaon mmlsattr mmcesfuncs mmfsadm mmcesmmccrexport runmmfs mmafmcmd ccrrestore mmunlinkfileset basicsnap.py mmafmhomeconfig auth.snap.py fab3.snap.py kdump-4.18.0-193.46.1.el8_2.ppc64le mmuserauth object.callhome.py mmlogsort mmdf mmcesobjcrstoragepolicy mmdefquotaoff mmtracectl mmdump tsprquery mmfsenv mmfsfuncs mmrepquota mmcesdr mmcesnode tslsquota mmdsm mmdelnsd mmnfsinit mmcrsnapshot mmlockf mmcesauthfuncs network.callhome.py mmglobfuncs.Linux tsprinquiry nfs.snap.py mmcesnetlsaddress mmapplypolicy mmdumpkthreads bscpwrap tswatchgpfsconduit mmcessmbchconfig perfmon.callhome.py mmauditpreunmount mmrcp scpwrap mmremotefs tsunlinkfileset mmcrcluster mmnfspreunmount mmcessmbchexport tsauditconsumer mmchattr mmdeldisk mmfsck smb.snap.py mmcesobjdepstoragepolicy mmcheckquota mmprodname mmdelfs mmcallhremote mmgetstate mmcesuserauthlsservice mmcesnetup mmremotecluster tsstarthelper mmcloudgateway mmgetconfdata tschpolicy mmchmgr tsloadikm mmcesnetchaddress mmsmbvalidoptions mmkeyserv mmchfileset mmwatch tsprregister mmstartpolicy hadoop.snap.py mmquotaoff mmcesmonitor mmquotaon msgqueueservicesmonitormanager mmlspool mmlsmount mmccrmonitor mmbackup mmlsnodeclass mmrefresh mmnfsrecovernode mmpercentdecode wftopichk tspcachesnapdiff mmdiag mmlssnapshot mmcesobjlsstoragepolicy mmafmctl mmstatdcallout mmksh sshscpwrap ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:1019) serialEvaluation: initial cxxDialectRanges ('c++03', 'c++17') serialEvaluation: new cxxDialectRanges ('c++03', 'c++17') child config.utilities.macosFirewall 0.000003 ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Linux Checking for program /sw/summit/xalt/1.2.1/bin/gdb...not found Checking for program /sw/sources/lsf-tools/2.0/summit/bin/gdb...not found Checking for program /sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/hdf5-1.10.7-nfhjvzsshg5qihqv44y5ji6ihsqpd73v/bin/gdb...not found Checking for program /sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/spectrum-mpi-10.4.0.3-20210112-nv7jd363ym3n4zpgornfbq6bh4tqjyak/bin/gdb...not found Checking for program /sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/compilers/bin/gdb...not found Checking for program /sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/cuda/bin/gdb...not found Checking for program /sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/gcc-8.3.1/cmake-3.20.2-5h4momgjnhes6fukxf3476n7qgkazefi/bin/gdb...not found Checking for program /sw/summit/python/3.8/anaconda3/2020.07-rhel8/bin/gdb...not found Checking for program /sw/summit/forge/21.0.3/bin/gdb...not found Checking for program /sw/sources/hpss/bin/gdb...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.11/linux3.10-glibc2.17-ppc64le-csm/etc/gdb...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.11/linux3.10-glibc2.17-ppc64le-csm/bin/gdb...not found Checking for program /opt/ibm/csm/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Executing: uname -s stdout: Linux child config.utilities.debuggers 0.046748 ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 15 #define PETSC_VERSION_SUBMINOR 3 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.062036 ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.004492 ============================================================================================= TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /sw/summit/xalt/1.2.1/bin/git...not found Checking for program /sw/sources/lsf-tools/2.0/summit/bin/git...not found Checking for program /sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/hdf5-1.10.7-nfhjvzsshg5qihqv44y5ji6ihsqpd73v/bin/git...not found Checking for program /sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/spectrum-mpi-10.4.0.3-20210112-nv7jd363ym3n4zpgornfbq6bh4tqjyak/bin/git...not found Checking for program /sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/compilers/bin/git...not found Checking for program /sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/cuda/bin/git...not found Checking for program /sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/gcc-8.3.1/cmake-3.20.2-5h4momgjnhes6fukxf3476n7qgkazefi/bin/git...not found Checking for program /sw/summit/python/3.8/anaconda3/2020.07-rhel8/bin/git...not found Checking for program /sw/summit/forge/21.0.3/bin/git...not found Checking for program /sw/sources/hpss/bin/git...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.11/linux3.10-glibc2.17-ppc64le-csm/etc/git...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.11/linux3.10-glibc2.17-ppc64le-csm/bin/git...not found Checking for program /opt/ibm/csm/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.18.4 ============================================================================================= TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /sw/summit/xalt/1.2.1/bin/hg...not found Checking for program /sw/sources/lsf-tools/2.0/summit/bin/hg...not found Checking for program /sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/hdf5-1.10.7-nfhjvzsshg5qihqv44y5ji6ihsqpd73v/bin/hg...not found Checking for program /sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/spectrum-mpi-10.4.0.3-20210112-nv7jd363ym3n4zpgornfbq6bh4tqjyak/bin/hg...not found Checking for program /sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/compilers/bin/hg...not found Checking for program /sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/cuda/bin/hg...not found Checking for program /sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/gcc-8.3.1/cmake-3.20.2-5h4momgjnhes6fukxf3476n7qgkazefi/bin/hg...not found Checking for program /sw/summit/python/3.8/anaconda3/2020.07-rhel8/bin/hg...not found Checking for program /sw/summit/forge/21.0.3/bin/hg...not found Checking for program /sw/sources/hpss/bin/hg...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.11/linux3.10-glibc2.17-ppc64le-csm/etc/hg...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.11/linux3.10-glibc2.17-ppc64le-csm/bin/hg...not found Checking for program /opt/ibm/csm/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /usr/local/sbin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /opt/ibm/flightlog/bin/hg...not found Checking for program /opt/ibm/jsm/bin/hg...not found Checking for program /opt/puppetlabs/bin/hg...not found Checking for program /usr/lpp/mmfs/bin/hg...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/hg...not found child config.sourceControl 0.024552 ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.15.3-691-g9b3f0822b7 Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 9b3f0822b7d41dfd890685eade7e02d89f19158d Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2021-08-24 03:59:04 +0000 Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD'] stdout: main Defined "VERSION_GIT" to ""v3.15.3-691-g9b3f0822b7"" Defined "VERSION_DATE_GIT" to ""2021-08-24 03:59:04 +0000"" Defined "VERSION_BRANCH_GIT" to ""main"" child PETSc.options.petscclone 0.215666 ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set ============================================================================================= Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-summit-opt-nvhpc, ignoring environment: arch-summit-dbg-gnu-cuda ============================================================================================= No previous hashfile found Setting hashfile: arch-summit-opt-nvhpc/lib/petsc/conf/configure-hash Deleting configure hash file: arch-summit-opt-nvhpc/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-summit-opt-nvhpc/lib/petsc/conf/configure-hash child PETSc.options.arch 0.068082 ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:39) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/gpfs/alpine/world-shared/phy122/lib/install/summit/petsc/current/opt-nvhpc21.7b" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:85) ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:78) ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:62) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-nvhpc/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:98) child PETSc.options.installDir 0.019814 ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.003075 ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.003192 ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:2049) CC (set to /sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/compilers/bin/nvc) found in environment variables - ignoring since also set on command line CXX (set to /sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/compilers/bin/nvc++) found in environment variables - ignoring since also set on command line FC (set to /sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/compilers/bin/nvfortran) found in environment variables - ignoring since also set on command line ============================================================================================= ***** WARNING: F77 (set to /sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/compilers/bin/nvfortran) found in environment variables - ignoring use ./configure F77=$F77 if you really want to use that value ****** ============================================================================================= ============================================================================================= ***** WARNING: F90 (set to /sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/compilers/bin/nvfortran) found in environment variables - ignoring use ./configure F90=$F90 if you really want to use that value ****** ============================================================================================= ============================================================================================= ***** WARNING: CPP (set to cpp) found in environment variables - ignoring use ./configure CPP=$CPP if you really want to use that value ****** ============================================================================================= ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:2079) ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:2019) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:2040) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:574) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to -ccbin nvc++ Initialized CUDAFLAGS to -ccbin nvc++ Initialized LDFLAGS to Initialized HIPFLAGS to Initialized HIPFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:749) Locate a functional C compiler Checking for program /gpfs/alpine/world-shared/phy122/lib/install/summit/kokkos/nvhpc21.7/bin/nvcc_wrapper...found Defined make macro "CC" to "/gpfs/alpine/world-shared/phy122/lib/install/summit/kokkos/nvhpc21.7/bin/nvcc_wrapper" ===== Checking compiler Executing: /gpfs/alpine/world-shared/phy122/lib/install/summit/kokkos/nvhpc21.7/bin/nvcc_wrapper -c -o /tmp/petsc-ec3vdqws/config.setCompilers/conftest.o -I/tmp/petsc-ec3vdqws/config.setCompilers /tmp/petsc-ec3vdqws/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : No input files specified; use option --help for more information Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Error testing C compiler: Cannot compile C with /gpfs/alpine/world-shared/phy122/lib/install/summit/kokkos/nvhpc21.7/bin/nvcc_wrapper. Deleting "CC" ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- C compiler you provided with -with-cc=/gpfs/alpine/world-shared/phy122/lib/install/summit/kokkos/nvhpc21.7/bin/nvcc_wrapper cannot be found or does not work. Cannot compile C with /gpfs/alpine/world-shared/phy122/lib/install/summit/kokkos/nvhpc21.7/bin/nvcc_wrapper. ******************************************************************************* File "/gpfs/alpine/csc314/scratch/adams/petsc/config/configure.py", line 461, in petsc_configure framework.configure(out = sys.stdout) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 1376, in configure self.processChildren() File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 1364, in processChildren self.serialEvaluation(self.childGraph) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 1339, in serialEvaluation child.configure() File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py", line 2110, in configure self.executeTest(self.checkCCompiler) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/base.py", line 138, in executeTest ret = test(*args,**kargs) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py", line 754, in checkCCompiler for compiler in self.generateCCompilerGuesses(): File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/setCompilers.py", line 694, in generateCCompilerGuesses raise RuntimeError('C compiler you provided with -with-cc='+self.argDB['with-cc']+' cannot be found or does not work.'+'\n'+self.mesg) ================================================================================ Finishing configure run at Fri, 27 Aug 2021 16:23:23 -0400 ================================================================================