<div dir="ltr">And I found that this C++ code calls PetscIntiialize from Fortran code. Hence the Fortran library in the call stack.<div><br></div><div>F90 tests work but our tests are pure Fortran.</div><div><br></div><div>Should they be using nvcc_wrapper (a Kokkos version) as a linker?</div><div><br></div><div>Thanks,</div><div>Mark</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Fri, Aug 27, 2021 at 6:05 PM Mark Adams <<a href="mailto:mfadams@lbl.gov">mfadams@lbl.gov</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div dir="ltr"><br></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Fri, Aug 27, 2021 at 5:03 PM Junchao Zhang <<a href="mailto:junchao.zhang@gmail.com" target="_blank">junchao.zhang@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">I don't understand the configure options<div><br><div>--with-cc=/gpfs/alpine/world-shared/phy122/lib/install/summit/kokkos/nvhpc21.7/bin/<b><font color="#ff0000">nvcc_wrapper</font></b> --with-cxx=/gpfs/alpine/world-shared/phy122/lib/install/summit/kokkos/nvhpc21.7/bin/nvcc_wrapper --with-fc=/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/spectrum-mpi-10.4.0.3-20210112-nv7jd363ym3n4zpgornfbq6bh4tqjyak/bin/mpifort COPTFLAGS="-g -fast" CXXOPTFLAGS="-g -fast" FOPTFLAGS="-g -fast" CUDAFLAGS="-ccbin nvc++" --with-ssl=0 --with-batch=0 --with-mpiexec="jsrun -g 1" <b><font color="#ff0000">--with-cuda=0</font></b> --with-cudac=/gpfs/alpine/world-shared/phy122/lib/install/summit/kokkos/nvhpc21.7/bin/nvcc_wrapper --with-cuda-gencodearch=70 --download-metis --download-parmetis --with-x=0 --with-debugging=0 PETSC_ARCH=arch-summit-opt-nvhpc --prefix=/gpfs/alpine/world-shared/phy122/lib/install/summit/petsc/current/opt-nvhpc21.7b</div><div><br></div><div>Why do you need to use nvcc_wrapper if you do not want to use cuda? </div></div></div></blockquote><div><br></div><div>That code that is having a problem links with nvcc_wrapper.</div><div>They get a segv that I sent earlier, in PetscInitialize so I figure I should use the same compiler / linker.</div><div>They use CUDA, but we don't need PETSc to use CUDA now.</div><div> <br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div><div>In addition, nvcc_wrapper is a C++ compiler. Using it for --with-cc=, you also need --with-clanguage=c++ </div></div></div></blockquote><div><br></div><div>I rebuilt PETSc with mpicc, mpiCC, mpif90 and <span style="color:rgb(80,0,80)">--with-nvcc=nvcc_wrapper and </span>that built make check works. I gave it to them to test.</div><div><br></div><div>Thanks,</div><div>Mark</div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div><div><br clear="all"><div><div dir="ltr"><div dir="ltr">--Junchao Zhang</div></div></div><br></div></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Fri, Aug 27, 2021 at 3:28 PM Mark Adams <<a href="mailto:mfadams@lbl.gov" target="_blank">mfadams@lbl.gov</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div dir="ltr"><br></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Fri, Aug 27, 2021 at 3:56 PM Junchao Zhang <<a href="mailto:junchao.zhang@gmail.com" target="_blank">junchao.zhang@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="auto"><div><br><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Fri, Aug 27, 2021, 1:52 PM Mark Adams <<a href="mailto:mfadams@lbl.gov" target="_blank">mfadams@lbl.gov</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">I think the problem is that I build with MPICC and they use <span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px;font-variant-ligatures:no-common-ligatures;background-color:rgb(220,255,239)">nvcc_</span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px;font-variant-ligatures:no-common-ligatures;background-color:rgb(220,255,239)">wrapper. I could just try building PETSc with CC=</span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px;font-variant-ligatures:no-common-ligatures;background-color:rgb(220,255,239)">nvcc_</span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px;font-variant-ligatures:no-common-ligatures;background-color:rgb(220,255,239)">wrapper, but it was not clear if this was the way to go.</span></div></blockquote></div></div><div dir="auto">--with-nvcc=nvcc_wrapper</div></div></blockquote><div><br></div><div>What do I specify for cc and CC?</div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="auto"><div dir="auto"><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px;font-variant-ligatures:no-common-ligatures;background-color:rgb(220,255,239)">I will try it.</span></div><div><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px;font-variant-ligatures:no-common-ligatures;background-color:rgb(220,255,239)">Thanks,</span></div><div><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px;font-variant-ligatures:no-common-ligatures;background-color:rgb(220,255,239)">Mark</span></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Fri, Aug 27, 2021 at 10:50 AM Junchao Zhang <<a href="mailto:junchao.zhang@gmail.com" rel="noreferrer" target="_blank">junchao.zhang@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div dir="ltr"><br><br></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Fri, Aug 27, 2021 at 7:06 AM Mark Adams <<a href="mailto:mfadams@lbl.gov" rel="noreferrer" target="_blank">mfadams@lbl.gov</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">I have a user (cc'ed) that has a C++ code and is using a PETSc that I built. He is getting this runtime error.<div><br><div>'make check' runs clean and I built snes/tutorial/ex1 manually, to get a link line, and it ran fine.</div><div>I appended the users link line and my test.<br></div><div><br></div><div>I see that they are using Kokkos' "<span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px;font-variant-ligatures:no-common-ligatures;background-color:rgb(220,255,239)">nvcc_</span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px;font-variant-ligatures:no-common-ligatures;background-color:rgb(220,255,239)">wrapper</span>". Should I rebuild PETSc using that, maybe we just need to make sure we are both using the same underlying compiler or should they use mpiCC?</div></div></div></blockquote><div>It looks like they used nvcc_wrapper to replace nvcc.  You can ask them to use nvcc directly to see what happens. But the error happened in petsc initialization, <span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px;font-variant-ligatures:no-common-ligatures;background-color:rgb(220,255,239)">petscsys_</span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px;font-variant-ligatures:no-common-ligatures;background-color:rgb(220,255,239)">petscinitializenohelp, </span>so I doubt it helps.  The easy way is to just attach a debugger. </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div><div> </div><div>Thanks,</div><div>Mark</div><div><br><div><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures;background-color:rgb(29,226,223)"><br>[</span><span style="font-variant-ligatures:no-common-ligatures">e13n16:591873</span><span style="font-variant-ligatures:no-common-ligatures;background-color:rgb(29,226,223)">]</span><span style="font-variant-ligatures:no-common-ligatures"> *** Process received signal ***</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591873] Signal: Segmentation fault (11)</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591873] Signal code: Invalid permissions (2)</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591873] Failing at address: 0x102c87e0</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591873] [ 0] linux-vdso64.so.1(__kernel_sigtramp_rt64+0x0)[0x2000000504d8]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591873] [ 1] [e13n16:591872] *** Process received signal ***</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591872] Signal: Segmentation fault (11)</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591872] Signal code: Invalid permissions (2)</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591872] Failing at address: 0x102c87e0</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591872] [ 0] linux-vdso64.so.1(__kernel_sigtramp_rt64+0x0)[0x2000000504d8]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591872] [ 1] [e13n16:591871] *** Process received signal ***</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591871] Signal: Segmentation fault (11)</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591871] Signal code: Invalid permissions (2)</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591871] Failing at address: 0x102c87e0</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591871] [ 0] linux-vdso64.so.1(__kernel_sigtramp_rt64+0x0)[0x2000000504d8]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591871] [ 1] /autofs/nccs-svm1_sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/compilers/lib/libnvf.so(pgf90_str_copy_klen+0x1fc)[0x200004a79ee4]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591871] [ 2] [e13n16:591874] *** Process received signal ***</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591874] Signal: Segmentation fault (11)</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591874] Signal code: Invalid permissions (2)</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591874] Failing at address: 0x102c87e0</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591874] [ 0] linux-vdso64.so.1(__kernel_sigtramp_rt64+0x0)[0x2000000504d8]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591874] [ 1] /autofs/nccs-svm1_sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/compilers/lib/libnvf.so(pgf90_str_copy_klen+0x1fc)[0x200004a79ee4]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591874] [ 2] /gpfs/alpine/world-shared/phy122/lib/install/summit/petsc/current/opt-nvhpc21.7b/lib/libpetsc.so.3.015(petscsys_petscinitializenohelp_+0xf4)[0x20000097b3ec]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591874] [ 3] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x10131dd8]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591874] [ 4] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x10015c60]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591874] [ 5] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x1005a8b0]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591874] [ 6] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x10015b14]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591874] [ 7] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x10014cd0]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591874] [ 8] /gpfs/alpine/world-shared/phy122/lib/install/summit/petsc/current/opt-nvhpc21.7b/lib/libpetsc.so.3.015(petscsys_petscinitializenohelp_+0xf4)[0x20000097b3ec]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591871] [ 3] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x10131dd8]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591871] [ 4] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x10015c60]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591871] [ 5] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x1005a8b0]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591871] [ 6] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x10015b14]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591871] [ 7] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x10014cd0]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591871] [ 8] /usr/lib/gcc/ppc64le-redhat-linux/8/../../../../lib64/power9/libc.so.6(+0x24078)[0x200005934078]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591871] [ 9] /usr/lib/gcc/ppc64le-redhat-linux/8/../../../../lib64/power9/libc.so.6(__libc_start_main+0xb4)[0x200005934264]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591871] *** End of error message ***</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">/usr/lib/gcc/ppc64le-redhat-linux/8/../../../../lib64/power9/libc.so.6(+0x24078)[0x200005934078]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591874] [ 9] /usr/lib/gcc/ppc64le-redhat-linux/8/../../../../lib64/power9/libc.so.6(__libc_start_main+0xb4)[0x200005934264]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591874] *** End of error message ***</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">/autofs/nccs-svm1_sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/compilers/lib/libnvf.so(pgf90_str_copy_klen+0x1fc)[0x200004a79ee4]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591872] [ 2] /gpfs/alpine/world-shared/phy122/lib/install/summit/petsc/current/opt-nvhpc21.7b/lib/libpetsc.so.3.015(petscsys_petscinitializenohelp_+0xf4)[0x20000097b3ec]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591872] [ 3] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x10131dd8]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591872] [ 4] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x10015c60]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591872] [ 5] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x1005a8b0]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591872] [ 6] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x10015b14]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591872] [ 7] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x10014cd0]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591872] [ 8] /usr/lib/gcc/ppc64le-redhat-linux/8/../../../../lib64/power9/libc.so.6(+0x24078)[0x200005934078]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591872] [ 9] /usr/lib/gcc/ppc64le-redhat-linux/8/../../../../lib64/power9/libc.so.6(__libc_start_main+0xb4)[0x200005934264]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591872] *** End of error message ***</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">/autofs/nccs-svm1_sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/compilers/lib/libnvf.so(pgf90_str_copy_klen+0x1fc)[0x200004a79ee4]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591873] [ 2] /gpfs/alpine/world-shared/phy122/lib/install/summit/petsc/current/opt-nvhpc21.7b/lib/libpetsc.so.3.015(petscsys_petscinitializenohelp_+0xf4)[0x20000097b3ec]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591873] [ 3] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x10131dd8]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591873] [ 4] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x10015c60]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591873] [ 5] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x1005a8b0]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591873] [ 6] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x10015b14]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591873] [ 7] /ccs/home/scheinberg/new_install/build/bin/xgc-es-cpp[0x10014cd0]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591873] [ 8] /usr/lib/gcc/ppc64le-redhat-linux/8/../../../../lib64/power9/libc.so.6(+0x24078)[0x200005934078]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591873] [ 9] /usr/lib/gcc/ppc64le-redhat-linux/8/../../../../lib64/power9/libc.so.6(__libc_start_main+0xb4)[0x200005934264]</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">[e13n16:591873] *** End of error message ***</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures"></span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures">ERROR:  One or more process (first noticed rank 1) terminated with signal 11 (core dumped)</span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures"><br></span></p><p style="font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;margin:0px;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures"><br></span></p><div dir="ltr"><p style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures"><br>/gpfs/alpine/world-shared/phy122/lib/install/summit/kokkos/nvhpc21.7/bin/nvcc_wrapper -arch=sm_70 CMakeFiles/xgc-es-cpp.dir/xgc-es-cpp_build_info.F90.o -o bin/xgc-es-cpp  -Wl,-rpath,/gpfs/alpine/world-shared/phy122/lib/install/summit/petsc/current/opt-nvhpc21.7b/lib:/gpfs/alpine/world-shared/phy122/lib/install/summit/adios2/devel/nvhpc/lib64 liblibxgc-es-cpp.a /sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/netlib-lapack-3.9.1-b5iqtudpwjumes5gsdol3bzsh7qlv7mf/lib64/liblapack.so /sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/netlib-lapack-3.9.1-b5iqtudpwjumes5gsdol3bzsh7qlv7mf/lib64/libblas.so /gpfs/alpine/world-shared/phy122/lib/install/summit/petsc/current/opt-nvhpc21.7b/lib/libpetsc.so /gpfs/alpine/world-shared/phy122/lib/install/summit/petsc/current/opt-nvhpc21.7b/lib/libparmetis.so /gpfs/alpine/world-shared/phy122/lib/install/summit/petsc/current/opt-nvhpc21.7b/lib/libmetis.so /sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/fftw-3.3.9-bzi7deue27ijd7xm4zn7pt22u4sj47g4/lib/libfftw3.so libs/pspline/libpspline.a libs/camtimers/libtimers.a /autofs/nccs-svm1_sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/compilers/lib/libacchost.so /gpfs/alpine/world-shared/phy122/lib/install/summit/adios2/devel/nvhpc/lib64/libadios2_fortran_mpi.so.2.7.1 /gpfs/alpine/world-shared/phy122/lib/install/summit/adios2/devel/nvhpc/lib64/libadios2_fortran.so.2.7.1 /gpfs/alpine/world-shared/phy122/lib/install/summit/kokkos/DEFAULT/install/lib64/libkokkoscontainers.a /gpfs/alpine/world-shared/phy122/lib/install/summit/kokkos/DEFAULT/install/lib64/libkokkoscore.a /usr/lib64/libcuda.so /autofs/nccs-svm1_sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/cuda/11.0/lib64/libcudart.so /usr/lib64/libdl.so -lmpi_ibm_usempif08 -lmpi_ibm_usempi_ignore_tkr -lmpi_ibm_mpifh -lnvf -Wl,-rpath-link,/gpfs/alpine/world-shared/phy122/lib/install/summit/adios2/devel/nvhpc/lib64</span></p><p style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures"><br></span></p><p style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);background-color:rgb(220,255,239)"><span style="font-variant-ligatures:no-common-ligatures"><br></span></p><div>19:39 main= /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ make PETSC_DIR=/gpfs/alpine/world-shared/phy122/lib/install/summit/petsc/current/opt-nvhpc21.7 PETSC_ARCH="" ex1<br><b>mpicc</b> -fPIC -g -fast  -fPIC -g -fast    -I/gpfs/alpine/world-shared/phy122/lib/install/summit/petsc/current/opt-nvhpc21.7/include     ex1.c  -Wl,-rpath,/gpfs/alpine/world-shared/phy122/lib/install/summit/petsc/current/opt-nvhpc21.7/lib -L/gpfs/alpine/world-shared/phy122/lib/install/summit/petsc/current/opt-nvhpc21.7/lib -Wl,-rpath,/gpfs/alpine/world-shared/phy122/lib/install/summit/petsc/current/opt-nvhpc21.7/lib -L/gpfs/alpine/world-shared/phy122/lib/install/summit/petsc/current/opt-nvhpc21.7/lib -Wl,-rpath,/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/spectrum-mpi-10.4.0.3-20210112-nv7jd363ym3n4zpgornfbq6bh4tqjyak/lib -L/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/spectrum-mpi-10.4.0.3-20210112-nv7jd363ym3n4zpgornfbq6bh4tqjyak/lib -Wl,-rpath,/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/hdf5-1.10.7-nfhjvzsshg5qihqv44y5ji6ihsqpd73v/lib -L/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/hdf5-1.10.7-nfhjvzsshg5qihqv44y5ji6ihsqpd73v/lib -Wl,-rpath,/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/netlib-lapack-3.9.1-b5iqtudpwjumes5gsdol3bzsh7qlv7mf/lib64 -L/sw/summit/spack-envs/base/opt/linux-rhel8-ppc64le/nvhpc-21.7/netlib-lapack-3.9.1-b5iqtudpwjumes5gsdol3bzsh7qlv7mf/lib64 -Wl,-rpath,/autofs/nccs-svm1_sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/compilers/lib -L/autofs/nccs-svm1_sw/summit/nvhpc_sdk/rhel8/Linux_ppc64le/21.7/compilers/lib -Wl,-rpath,/usr/lib/gcc/ppc64le-redhat-linux/8 -L/usr/lib/gcc/ppc64le-redhat-linux/8 -lpetsc -llapack -lblas -lparmetis -lmetis -lstdc++ -ldl -lpthread -lmpiprofilesupport -lmpi_ibm_usempif08 -lmpi_ibm_usempi_ignore_tkr -lmpi_ibm_mpifh -lmpi_ibm -lnvf -lnvomp -latomic -lnvhpcatm -lnvcpumath -lnvc -lrt -lm -lgcc_s -lstdc++ -ldl -o ex1<br>19:40 main= /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ <b>mpicc --version</b><br><br><b>nvc 21.7-0 linuxpower target on Linuxpower</b><br>NVIDIA Compilers and Tools<br>Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES.  All rights reserved.<br></div><div>19:40 main= /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ jsrun -n 1 ./ex1 -ksp_monitor<br>    0 KSP Residual norm 6.041522986797e+00<br>    1 KSP Residual norm 1.042493382631e+00<br>    2 KSP Residual norm 7.950907844730e-16<br>    0 KSP Residual norm 4.786756692342e+00<br>    1 KSP Residual norm 1.426392207750e-01<br>    2 KSP Residual norm 1.801079604472e-15<br>    0 KSP Residual norm 2.986456323228e+00<br>    1 KSP Residual norm 7.669888809223e-02<br>    2 KSP Residual norm 3.744083117256e-16<br>    0 KSP Residual norm 2.306244667700e-01<br>    1 KSP Residual norm 1.355550749587e-02<br>    2 KSP Residual norm 5.845524837731e-17<br>    0 KSP Residual norm 1.936314002654e-03<br>    1 KSP Residual norm 2.125593590819e-04<br>    2 KSP Residual norm 6.987141455073e-20<br>    0 KSP Residual norm 1.435593531990e-07<br>    1 KSP Residual norm 2.588271385567e-08<br>    2 KSP Residual norm 3.942196167935e-23</div></div><div style="outline:none;padding:10px 0px;width:22px;margin:2px 0px 0px"><br></div></div></div></div></div>
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