Executing: uname -s stdout: Linux ================================================================================ ================================================================================ Starting configure run at Sat, 29 May 2021 16:22:04 -0400 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --CFLAGS="-fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4" --CXXFLAGS="-fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14" --COPTFLAGS=-O0 --CXXOPTFLAGS=-O0 --CUDAFLAGS="-Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4" --with-ssl=0 --with-batch=0 --with-cxx=mpicxx --with-mpiexec="jsrun -g1 " --with-openmp=0 --with-cuda=1 --with-cuda-gencodearch=70 --with-cudac="nvcc -ccbin=pgc++" --download-p4est=1 --download-zlib --prefix=/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda --download-triangle --with-blaslapack-lib="-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64 -lblas -llapack" --with-cc=mpicc --with-fc=0 --with-shared-libraries=1 --with-x=0 --with-64-bit-indices=0 --with-debugging=1 --download-kokkos --with-ctable=0 --with-make-np=8 --download-kokkos-kernels --with-kokkos-kernels-tpl=0 --download-kokkos-cmake-arguments="-DKokkos_ENABLE_AGGRESSIVE_VECTORIZATION=ON -DKokkos_ARCH_POWER9=ON" PETSC_ARCH=arch-summit-opt-pgi-kokkos-notpl-cuda10 Working directory: /gpfs/alpine/csc314/scratch/adams/petsc Machine platform: ('Linux', 'login4', '4.14.0-115.21.2.el7a.ppc64le', '#1 SMP Thu May 7 22:22:31 UTC 2020', 'ppc64le', 'ppc64le') Python version: 2.7.5 (default, Feb 26 2020, 09:25:01) [GCC 4.8.5 20150623 (Red Hat 4.8.5-36)] ================================================================================ Environmental variables LMOD_FAMILY_MPI=spectrum-mpi XL_LINKER=/sw/summit/xalt/1.2.1/bin/ld __LMOD_REF_COUNT_MODULEPATH=/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/spectrum-mpi/10.3.1.2-20200121-zy6l7p3/pgi/19.9:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/pgi-extensions:1;/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/pgi/19.9:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core:1;/sw/summit/modulefiles/core:1 LMOD_SETTARG_FULL_SUPPORT=no PAMI_IBV_ADAPTER_AFFINITY=1 CUDA_DIR=/sw/summit/cuda/10.1.243 SHELL=/bin/bash LMOD_MPI_VERSION=10.3.1.2-20200121-zy6l7p3 HISTSIZE=100 OLCF_FAMILY_MPI=spectrum-mpi MANPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/share/man:/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/man:/sw/summit/cuda/10.1.243/doc/man:/sw/sources/hpss/man:/sw/summit/lmod/8.2.10/share/man:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/man::/opt/puppetlabs/puppet/share/man XDG_RUNTIME_DIR=/run/user/62983 PYTHONPATH=/sw/summit/xalt/1.2.1/site:/sw/summit/xalt/1.2.1/libexec __LMOD_REF_COUNT_LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/lib:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib:1 LMOD_FAMILY_COMPILER_VERSION=19.9 __LMOD_REF_COUNT_CMAKE_PREFIX_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656:1;/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc:1;/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43:1 __LMOD_REF_COUNT_NLSPATH=/sw/summit/xl/16.1.1-5/msg/en_US/%N:2;/sw/summit/xl/16.1.1-5/xlC/16.1.1/msg/en_US/%N:1;/sw/summit/xl/16.1.1-5/xlf/16.1.1/msg/en_US/%N:1 XDG_SESSION_ID=24271 LMOD_FAMILY_COMPILER=pgi OLCF_LMOD_ROOT=/sw/summit CXX=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/pgc++ OMPI_FC=pgfortran HOSTNAME=login4 JSM_JSRUN_NO_WARN_TOPOLOGY=1 DDT_HOME=/sw/summit/forge/20.0.1 _ModuleTable002_=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 PETSC_ARCH=arch-summit-opt-gnu-kokkos-notpl-cuda FC=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/pgfortran MAIL=/var/spool/mail/adams 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OMPI_MCA_io=romio321 __LMOD_REF_COUNT_MANPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/share/man:1;/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/man:1;/sw/summit/cuda/10.1.243/doc/man:1;/sw/sources/hpss/man:1;/sw/summit/lmod/8.2.10/share/man:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/man:1;/opt/puppetlabs/puppet/share/man:1 OLCF_NETLIB_LAPACK_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb OLCF_CUDA_ROOT=/sw/summit/cuda/10.1.243 LESSOPEN=||/usr/bin/lesspipe.sh %s LSF_BINDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin _ModuleTable008_=b2R1bGVmaWxlcy9zaXRlL2xpbnV4LXJoZWw3LXBwYzY0bGUvcGdpLzE5LjkiLCIvc3cvc3VtbWl0L21vZHVsZWZpbGVzL3NpdGUvbGludXgtcmhlbDctcHBjNjRsZS9Db3JlIiwiL3N3L3N1bW1pdC9tb2R1bGVmaWxlcy9jb3JlIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9zdy9zdW1taXQvbW9kdWxlZmlsZXMvc2l0ZS9saW51eC1yaGVsNy1wcGM2NGxlL0NvcmU6L3N3L3N1bW1pdC9tb2R1bGVmaWxlcy9jb3JlIix9 CPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/include:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/include:/sw/summit/cuda/10.1.243/include USER=adams LSF_ENVDIR=/opt/ibm/spectrumcomputing/lsf/conf PAMI_ENABLE_STRIPING=0 PS1=\A\[\033[;1m\]\[\033[35m\]$(ret=$?; [ $ret -ne 0 ] && echo -n " $ret")\[\033[;0m\] \[\033[34m\]$(__git_ps1 '%s') \[\033[32m\]\w\[\033[0m\]\$ OLCF_SPECTRUM_MPI_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656 __LMOD_REF_COUNT_LD_LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/lib:1;/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/lib:1;/sw/summit/cuda/10.1.243/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib:1 SHLVL=1 __LMOD_REF_COUNT_ACLOCAL_PATH=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/share/aclocal:1 DISPLAY=localhost:20.0 OLCF_FAMILY_COMPILER=pgi PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc OPAL_PREFIX=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656 LMOD_FAMILY_MPI_VERSION=10.3.1.2-20200121 MODULESHOME=/sw/summit/lmod/8.2.10 XALT_ETC_DIR=/sw/summit/xalt/1.2.1/etc 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PKG_CONFIG_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64/pkgconfig:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/pkgconfig BASH_ENV=/sw/summit/lmod/8.2.10/init/bash 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_=/ccs/home/adams/arch-summit-opt-pgi-kokkos.py MODULEPATH=/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/spectrum-mpi/10.3.1.2-20200121-zy6l7p3/pgi/19.9:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/pgi-extensions:/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/pgi/19.9:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core:/sw/summit/modulefiles/core SSH_CONNECTION=160.91.202.152 53198 128.219.134.74 22 OMP_NUM_THREADS=1 OLCF_FAMILY_MPI_VERSION=10.3.1.2-20200121 AUTOGEN_PARALLEL=1 LMOD_MPI_NAME=spectrum-mpi _LMFILES_=/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/hsi/5.0.2.p5.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/xalt/1.2.1.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/lsf-tools/2.0.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/darshan-runtime/3.1.7.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/DefApps.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cmake/3.20.2.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cuda/10.1.243:/sw/summit/modulefiles/core/forge/20.0.1:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/pgi/19.9.lua:/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/pgi/19.9/spectrum-mpi/10.3.1.2-20200121.lua:/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/pgi/19.9/netlib-lapack/3.8.0.lua OMPI_CXX=pgc++ __LMOD_REF_COUNT_LOADEDMODULES=hsi/5.0.2.p5:1;xalt/1.2.1:1;lsf-tools/2.0:1;darshan-runtime/3.1.7:1;DefApps:1;cmake/3.20.2:1;cuda/10.1.243:1;forge/20.0.1:1;pgi/19.9:1;spectrum-mpi/10.3.1.2-20200121:1;netlib-lapack/3.8.0:1 LMOD_DIR=/sw/summit/lmod/8.2.10/libexec GIT_PS1_SHOWDIRTYSTATE=1 PAMI_IBV_ENABLE_DCT=1 LMOD_PKG=/sw/summit/lmod/8.2.10 MODULEPATH_ROOT=/sw/summit/modulefiles HOME=/ccs/home/adams LD_LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/lib:/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/lib:/sw/summit/cuda/10.1.243/lib64:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib LSF_SERVERDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc CUDAPATH=/sw/summit/cuda/10.1.243 LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/lib:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib LMOD_SYSTEM_NAME=summit __LMOD_REF_COUNT__LMFILES_=/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/hsi/5.0.2.p5.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/xalt/1.2.1.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/lsf-tools/2.0.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/darshan-runtime/3.1.7.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/DefApps.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cmake/3.20.2.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cuda/10.1.243:1;/sw/summit/modulefiles/core/forge/20.0.1:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/pgi/19.9.lua:1;/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/pgi/19.9/spectrum-mpi/10.3.1.2-20200121.lua:1;/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/pgi/19.9/netlib-lapack/3.8.0.lua:1 GIT_PS1_SHOWUPSTREAM=auto CUDA_TOOLKIT_ROOT_DIR=/sw/summit/cuda/10.1.243 _ModuleTable_Sz_=8 OLCF_MODULEPATH_ROOT=/sw/summit/modulefiles OMPI_CC=pgcc __Init_Default_Modules=1 CC=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/pgcc __LMOD_REF_COUNT_CPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/include:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/include:1;/sw/summit/cuda/10.1.243/include:1 OLCF_PGI_ROOT=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc LMOD_CMD=/sw/summit/lmod/8.2.10/libexec/lmod PROJWORK=/gpfs/alpine/proj-shared _ModuleTable005_=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 BASH_FUNC_module()=() { eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh) } F77=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/pgfortran XLSF_UIDDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib/uid OLCF_DARSHAN_RUNTIME_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43 SSH_TTY=/dev/pts/108 CVS_RSH=ssh _ModuleTable006_=b2FkT3JkZXIiXT05LHByb3BUPXt9LFsic3RhY2tEZXB0aCJdPTAsWyJzdGF0dXMiXT0iYWN0aXZlIixbInVzZXJOYW1lIl09InBnaSIsfSxbInNwZWN0cnVtLW1waSJdPXtbImZuIl09Ii9hdXRvZnMvbmNjcy1zdm0xX3N3L3N1bW1pdC9tb2R1bGVmaWxlcy9zaXRlL2xpbnV4LXJoZWw3LXBwYzY0bGUvcGdpLzE5Ljkvc3BlY3RydW0tbXBpLzEwLjMuMS4yLTIwMjAwMTIxLmx1YSIsWyJmdWxsTmFtZSJdPSJzcGVjdHJ1bS1tcGkvMTAuMy4xLjItMjAyMDAxMjEiLFsibG9hZE9yZGVyIl09MTAscHJvcFQ9e30sWyJzdGFja0RlcHRoIl09MCxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0ic3BlY3RydW0tbXBpIix9LHhhbHQ9e1siZm4iXT0iL3N3L3N1bW1pdC9tb2R1 OLDPWD=/gpfs/alpine/csc314/scratch/adams/petsc/src/ts/utils/dmplexlandau/tutorials/tput PAMI_IBV_ENABLE_OOO_AR=1 OMPI_LD_PRELOAD_PREPEND=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/libdarshan.so LMOD_SYSTEM_DEFAULT_MODULES=DefApps SSH_CLIENT=160.91.202.152 53198 22 LOGNAME=adams ACLOCAL_PATH=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/share/aclocal PATH=/sw/sources/lsf-tools/2.0/summit/bin:/sw/summit/xalt/1.2.1/bin:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin:/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin:/sw/summit/forge/20.0.1/bin:/sw/summit/cuda/10.1.243/bin:/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin:/sw/sources/hpss/bin:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin:/opt/ibm/csm/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibm/flightlog/bin:/opt/ibutils/bin:/opt/ibm/spectrum_mpi/jsm_pmix/bin:/opt/puppetlabs/bin:/usr/lpp/mmfs/bin TERM=xterm-256color CMAKE_PREFIX_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656:/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc:/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43 OPAL_LIBDIR=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/lib MEMBERWORK=/gpfs/alpine/scratch/adams LSF_LIBDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib OLCF_CMAKE_ROOT=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm _ModuleTable003_=L3N3L3N1bW1pdC9tb2R1bGVmaWxlcy9zaXRlL2xpbnV4LXJoZWw3LXBwYzY0bGUvQ29yZS9kYXJzaGFuLXJ1bnRpbWUvMy4xLjcubHVhIixbImZ1bGxOYW1lIl09ImRhcnNoYW4tcnVudGltZS8zLjEuNyIsWyJsb2FkT3JkZXIiXT00LHByb3BUPXt9LFsic3RhY2tEZXB0aCJdPTEsWyJzdGF0dXMiXT0iYWN0aXZlIixbInVzZXJOYW1lIl09ImRhcnNoYW4tcnVudGltZSIsfSxmb3JnZT17WyJmbiJdPSIvc3cvc3VtbWl0L21vZHVsZWZpbGVzL2NvcmUvZm9yZ2UvMjAuMC4xIixbImZ1bGxOYW1lIl09ImZvcmdlLzIwLjAuMSIsWyJsb2FkT3JkZXIiXT04LHByb3BUPXt9LFsic3RhY2tEZXB0aCJdPTAsWyJzdGF0dXMiXT0iYWN0aXZlIixbInVzZXJOYW1lIl09ImZvcmdlIix9LGhz XALT_OLCF=1 __LMOD_Priority_PATH=/sw/sources/lsf-tools/2.0/summit/bin:-9999;/sw/summit/xalt/1.2.1/bin:-9999 OMPI_DIR=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656 OLCF_FAMILY_COMPILER_VERSION=19.9 BASH_FUNC_ml()=() { eval $($LMOD_DIR/ml_cmd "$@") } PAMI_IBV_QP_SERVICE_LEVEL=8 MPI_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656 WORLDWORK=/gpfs/alpine/world-shared LMOD_sys=Linux LOADEDMODULES=hsi/5.0.2.p5:xalt/1.2.1:lsf-tools/2.0:darshan-runtime/3.1.7:DefApps:cmake/3.20.2:cuda/10.1.243:forge/20.0.1:pgi/19.9:spectrum-mpi/10.3.1.2-20200121:netlib-lapack/3.8.0 LMOD_ROOT=/sw/summit/lmod HISTCONTROL=ignoredups PWD=/gpfs/alpine/csc314/scratch/adams/petsc _ModuleTable004_=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 OLCF_HSI_ROOT=/sw/sources/hpss BINARY_TYPE_HPC= Files in path provided by default path /sw/sources/lsf-tools/2.0/summit/bin: bsub bjob showusage test_bsub /sw/summit/xalt/1.2.1/bin: jsrun ld xalt_helper_functions.sh /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin: shmemrun profile2mat.pl oshrun oshmem_info orterun orted orte-server orte-info orte-clean ompi_info ompi-server ompi-clean mpitool mpirun mpijob mpiexec jumpshot get_nl_setting efix alias.pl aggregate_profile.pl stock shmemfort shmemcxx shmemcc shmemc++ shmemCC oshfort oshcxx oshcc oshc++ oshCC ortecc opal_wrapper mpixlf mpixlc mpixlC mpipgifort mpipgicc mpipgic++ mpifort mpif90 mpif77 mpicxx mpicc mpic++ mpiCC mpip-jsrun /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin: localrc pgaccelerror pgimport pgacclnk pgaccelinfo pgnvd pgexplain.xml pgunzip pgzip pgsize pgipa pgicg pgextract pgappend pgprepro pgcpuid pgprofrc pgprof pgf901-llvm_ex pgf901-llvm pgf90-llvm_ex pgf902-llvm pggpp2ex-llvm pggpp2-llvm pggpp1-llvm pggdecode pgc-llvm_ex pgc-llvm pgfortran pgf90 pgc++ pgcc18 pgcc11 pgcc pgnvvm makelocalrc pgnvdlinpowerrc pgnvd64rc pgnvdrc .pgnvdrc acclinuxpower64rc acc1rc versionrc powerversionrc c++llvmrc pgllvmrc llvmrc linpoweriparc noiparc iparc pgftnrc pgf90linpowerrc pgc++linpowerrc pgcclinpowerrc linpowerrc powerrc cpprc ccrc fnativerc nativerc .pgfortranrc .pgf90rc .pgc++rc .pgcc18rc .pgcc11rc .pgccrc siterc /sw/summit/forge/20.0.1/bin: ddt-debugger-mps ddt ddt-debugger allinea-client ddt-mpirun forge-probe forge make-profiler-libraries ddt-debugger-ll map ddt-client /sw/summit/cuda/10.1.243/bin: cuobjdump cuda-gdb cuda-gdbserver gpu-library-advisor cuda-memcheck nsight nsight_ee_plugins_manage.sh nv-nsight-cu-cli bin2c crt cudafe++ fatbinary nvcc nvcc.profile nvlink ptxas nvdisasm nvprof nvprune computeprof nvvp cuda-install-samples-10.1.sh /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin: ccmake cmake ctest cpack /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin: darshan-mk-log-dirs.pl darshan-gen-cc.pl darshan-gen-cxx.pl darshan-gen-fortran.pl darshan-config /sw/sources/hpss/bin: htar 5.0.2.9 6.0.0.11 5.0.2.11 hsi 6.2.0.1 6.3 6.3.1 TA_Status test_TA /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc: esub esub.poe pim lsf_daemons rla elim.jsdl named esub.tv esub.openmp esub.mvapich esub.dprov sbatchd esub.bproc esub.openmpi esub.oldtvpoe esub.mpichp4 elim.frequency esub.tvlammpi esub.oldpoe lim esub.ls_dyna esub.tvmpich_gm esub.fluent nios esub.gold esub.mpich_gm esub.pvm esub.intelmpi esub.mpich_mx eauth.krb5 res tmp.elim.sa eauth esub.tvpoe mesub esub.mpich2 melim esub.lammpi /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin: brsvjob lspasswd bmgroup bpost btop bclusters lsplace bjdepinfo lsreghost brsvs bparams bgadd lsrun lsload breconfig lsfrestart bconf bmod bsub lsunlockhost bmodify bread bacct lsfrsv lsgrun bslots bapp bjobs lsmail lsfstartup lsmake4 lslockhost lsfshutdown bpeek lsrun.sh lslogin bimages bchkpnt bwait lsfhadoop.sh bsla brsvmod lsrtasks blimits busers bresources bqueues brequeue bmg lsrcp lseligible lshosts lsloadadj breboot lsacct lsclusters bugroup lsltasks lsadmin bstatus bgbroker bgdel bentags lsportcheck brsvsub lsf-start-spark.sh bqc bhpart lsf-spark-shell.sh lsmakerm lsf-spark-submit.sh brestart bswitch bjgroup lsreconfig lammpirun_wrapper lsf-stop-spark.sh badmin bbot bstop lsinfo brun bhist bhosts bgmod brsvadd bkill brlainfo brsvdel xagent bresize bmig lsmon lsid bgpinfo lsmake bresume blaunch lsacctmrg /opt/ibm/csm/bin: csm_bb_vg_create csm_node_find_job csm_cluster_query_state csm_allocation_create csm_ib_cable_update csm_allocation_query_active_all csm_bb_lv_delete csm_allocation_update_state csm_switch_attributes_update csm_soft_failure_recovery csm_diag_run_query csm_allocation_step_begin csm_bb_vg_delete csm_node_attributes_query_history csm_allocation_query_details csm_node_attributes_query_details csm_diag_run_query_details csm_ras_event_create csm_diag_run_begin csm_node_resources_query_all csm_allocation_query csm_ras_event_query_allocation csm_switch_attributes_query csm_node_attributes_query csm_switch_attributes_query_details csm_infrastructure_health_check csm_node_attributes_update csm_ras_msg_type_create csm_ras_msg_type_delete csm_ras_msg_type_query csm_node_query_state_history csm_switch_attributes_query_history csm_allocation_step_query_active_all csm_bb_lv_create csm_node_resources_query csm_allocation_delete csm_ras_event_query csm_allocation_resources_query csm_diag_result_create csm_node_delete csm_ras_msg_type_update csm_bb_vg_query csm_ib_cable_query_history csm_diag_run_end csm_allocation_step_query csm_allocation_step_query_details csm_allocation_update_history csm_allocation_step_end csm_ib_cable_query csm_jsrun_cmd csm_bb_lv_query /usr/local/bin: /usr/bin: singularity run-singularity sview strigger sstat sshare srun sreport squeue sprio smap sinfo sgather sdiag scontrol scancel sbcast sbatch sattach salloc sacctmgr sacct jobsub jobstat ctags diffstat rpmsign swig ccache-swig ocs cscope-indexer cscope doxygen unwrapdiff splitdiff rediff recountdiff lsdiff interdiff grepdiff flipdiff fixcvsdiff filterdiff espdiff editdiff dehtmldiff combinediff yacc byacc indent rlog rcsmerge rcsfreeze rcsdiff rcsclean rcs merge ident co ci svnversion svnsync svnserve svnrdump svnlook svndumpfilter svnadmin svn intltoolize intltool-update intltool-prepare intltool-merge intltool-extract gettextize autopoint stap-report stapsh staprun stap-merge stap-prep stap screen rhn_register whiptail subscription-manager rhsmcertd rhsm-debug rct consolehelper pyinotify easy_install-2.7 easy_install snmpwalk snmpvacm snmpusm snmptrap snmptranslate snmptls snmptest snmptable snmpstatus snmpset snmpnetstat snmpinform snmpgetnext snmpget snmpdf snmpdelta snmpbulkwalk snmpbulkget encode_keychange chardetect atopsar atopd atopconvert atop abrt-dump-oops abrt-action-save-kernel-data abrt-action-analyze-oops abrt-action-trim-files abrt-action-perform-ccpp-analysis abrt-action-list-dsos abrt-action-install-debuginfo abrt-action-generate-core-backtrace abrt-action-generate-backtrace abrt-action-analyze-vulnerability abrt-action-analyze-core abrt-action-analyze-ccpp-local abrt-action-analyze-c abrt-action-analyze-backtrace abrt-watch-log abrt-handle-upload abrt-action-save-package-data abrt-action-notify abrt-action-analyze-xorg reporter-ureport reporter-rhtsupport libtar satyr git git-receive-pack git-upload-archive git-upload-pack git-shell lex tset pk12util as lpr.cups speaker-test manpath hwloc-gather-topology hwloc-calc rev snmpconf sctp_darn trust nm fc-pattern ucs2any zforce groups gunzip tracepath rdma_xclient unalias db_upgrade dbus-uuidgen uuidgen uname df fc-match evim schemagen sessreg rdoc gdbus-codegen perl perl5.16.3 egrep mlxcables recode-sr-latin pkcheck GET rvim addr2line gsdj500 rpmbuild amixer unexpand ypchsh yppasswd ypchfn install cancel.cups msggrep mwm gcc-nm remunge ibgenperm thumbpdf nsenter clean-binary-files httpcfg mlnx_dump_parser ghci autoexpect ntpstat texluac dtestsrq lz4cat pkttyagent python2 pkla-admin-identities hpc tail size fc-query mkluatexfontdb dbus-cleanup-sockets nisdomainname ldapurl xsd startx crash mcdiff make gslp mktexfmt pmafm xdg-desktop-icon ldappasswd csh printenv vncconfig wqdump_ext gendiff mst_cable X mstvpd zmore db_hotbackup signver systemctl amsvis tbl xmessage servertool sn embedspu rview nohup grops geoipupdate xfd rm infotocap pwscore eu-objdump mysql mailq.postfix ptx systemd-loginctl mstop rxe_cfg ar ccrewrite diff-jars python pmsocks migspeed xmbind objcopy alias dos2unix ca-legacy tclsh ofed_rpm_info hwloc-assembler-remote vimtutor lprm pygtk-demo jjs prtstat seq col pdcp eu-strip ib_acme resourcedump dirname fc-cache-64 lesskey date basename grep geoiplookup6 ssh-copy-id xterm svcutil libpng-config dvilualatex db_load systemd-notify dracut texconfig haddock xrandr umount xdg-mime prlimit ucx_info infokey pstree.x11 mono-test-install write geqn xdg-screensaver 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ps2pdfwr peekfd ib_atomic_bw preconv dtestx aria_dump_log gpg-error pmtrace allec post-grohtml tree net-snmp-create-v3-user bunzip2 zcat xzless lscpu xzmore udaddy alsamixer find2perl dtestcm iconv rpm2cpio desktop-file-edit ps2pdf13 ldapexop hwloc-assembler rpmquery ibv_umr chown pdsh gcc-ar pdb2mdb unshare db_replicate nsupdate cpio xmvn-builddep comm dbus-monitor automake-1.13 automake eu-stack runghc-7.6.3 xgettext chsh eqn gdb lualatex cpupower build-jar-repository gacutil2 gawk rftp kpsewhere c99 nvidia-smi reset xdg-open zip split mlx_fpga_ext catchsegv ghc-7.6.3 keytool aria_chk mlxreg mstregdump alsaucm mlxlink rename chktrust true db_recover mktexlsr xpr skill otflist gfortran gtroff uil jvmjar zgrep elfedit xclipboard passwd prove eu-nm openssl su kibitz kpsestat pgrep printf gtbl ib_read_lat zipdetails gtar jarsigner mysql_find_rows fold gconf-merge-tree munge ln tty uuclient stat chfn find-jar wish pmdiff mkocp lchsh jconsole luit diff rpmdb gcore rsync fc-list dmesg libtool mkfontscale zsoelim mstmcra pod2usage xjc uptime dump2slvl.pl ldapwhoami testrb alsatplg setarch dbus-test-tool msgfmt alsa-delay gview texconfig-dialog ps2pdf14 cairo-sphinx sctp_test ps2epsi pmlogconf dwz amidi updmap-sys compile_et man cmp hostnamectl dd tmon vdir pldd sctp_status iceauth getfacl xrdb runhaskell-ghc udpong hwloc-distances sh db_stat ib_write_bw fmt fc-validate mcs ibv_cc_pingpong base64 ibv_devinfo ibv_xsrq_pingpong mlxreg_ext sqlite3 ps2ps2 dapltest tar head ps2pdf ri serialver script pstree msgcomm finger fallocate xzdec whatis gencat perlthanks perlbug xconsole xclock wsdl mlxtrace aclocal aclocal-1.13 red readlink unix2mac vim zegrep certutil hwloc-info xinput hwloc-distrib gzip ypcat localedef emacs pmlogsummary mlnx_interface_mgr.sh mysql_config gpgsplit zipinfo unzip updatedb idn systemd-run pwd mailx xzdiff db_dump185 wish8.5 ibv_devices ls mcedit iptables-xml db_dump unlz4 xdg-icon-resource arecord kernel-install otftobdf sqlmetal mysqlslap lp dbus-run-session xcursorgen mremote gsbj ldapadd unpigz pigz ed gss-client ibdiagm.sh m4 systemd-path kpsetool cal raw_ethernet_burst_lat mpi-selector lprsetup.sh rvi mono xrefresh zipsplit lp.cups batch mysqladmin ib_write_lat ldapcompare lprm.cups which msginit oldfind toe unlink lz4c ppc64le-redhat-linux-g++ c++ g++ ppc64le-redhat-linux-c++ montage ghostscript diff3 dcgmi ibdiagpath pmfind free ghc-doc-index gpg-zip tcsh mconfig gpgv2 jdb pmpython allneeded icewmhint pinky rmid ebrowse lsblk xmlwf memhog ruby eu-findtextrel dislocate vncviewer less ibdev2netdev lsmem systemd-ask-password kpsereadlink lstopo-no-graphics bzcat python2-config cat ngettext gtk-query-immodules-3.0-64 apropos dimax_init icewmtray linux64 mstcongestion gdb-add-index who dviluatex xwud pstack ldapmodrdn bzgrep ucx_read_profile ionice bison rmic mktexpk ppc32 ranlib jhat slabtop x11perf systemd-cgtop wait catman xauth systemd-cat cancel bg env xkill pmlc numactl tnameserv pmdbg at convert Xvnc flint_ext strings soapsuds gstack msgcmp mkofm ssh-keygen sdiff HEAD ib_send_lat mkfontdir pgawk mysqlbinlog lppasswd dbus-daemon emacs-24.3 nroff locate setup-nsssysinit.sh igawk mlx_fs_dump gsdj tic lsinitrd weather gcov mono-boehm patch sudo ib_read_bw info dump2psl.pl xsetmode jrunscript kdumpctl lslocks gnroff shuf vmstat latex lslogins lua flex++ ssh-keyscan mlxtrace_ext msgattrib signtool rpmverify getent pmieconf ssh-agent xdg-desktop-menu ibdmchk ibnetsplit link gpg-agent pmlogcheck mlxlink_ext dbus-update-activation-environment bc nice raw mlxgearbox pmevent riostream wftopfa aserver mget_temp javadoc unxz ib_send_bw cpp desktop-file-install checksctp ucmatose gpg jsadebugd kpsewhich aria_read_log whereis systemd-tty-ask-password-agent pmerr mysqldump mstfwtrace java dvi2fax ibv_intf tzselect ibv_dctgt fmtutil gsoelim chmem ssh mstmtserver wsdl2 pmdate modutil vncserver pmval pmstore systemd-stdio-bridge paste xdg-email POST pod2text gacutil setpriv mandb lsattr tracepath6 xwd rdma_server desktop-file-validate mget_temp_ext nvidia-modprobe truncate numfmt mlnx_qos xbiff ppc64 lwp-request xgamma rmail mkfifo luac hsc2hs-ghc texconfig-sys systemd-detect-virt secon rebuild-jar-repository sim_client h2ph pminfo f95 bashbug-64 mktemp gneqn sum unbuffer newgrp mlxfwmanager allcm usleep etags ikdasm mac2unix sha384sum wsimport hwloc-patch ofed_info cvtsudoers krb5-config mstfwreset pdfetex dir sprof run_perftest_multi_devices cp ypwhich xset jstack sxpm pmclient chattr run-parts mstconfig gapplication extcheck mlxvpd ghc-pkg eu-elfcompress fribidi fc x11perfcomp logger watchgnupg dtest xeyes csslint-0.6 timeout makedb ibdump chcon aconnect ib_atomic_lat stream icewm-xdg-menu runhaskell msgunfmt lexgrog lsipc expect bashbug xz fmtutil-sys gettext.sh glib-compile-schemas pmstat javah ipcmk pstruct c2ph mtserver luatex cert-sync mlxmdio rdma_xserver pmlogger mountpoint eu-ranlib rmdir hostname pmap ipcalc zipnote lwp-dump pdf2ps gpasswd animate zsh python-config db_deadlock vpi_tcpdump jcmd migratepages resize showrgb captoinfo pax rstream jps ps systemd-cgls db_tuner systemd-inhibit [ ul snice rpmspec wc pod2html timed-read ibdiagnet lwp-download haddock-ghc-7.6.3 cmsutil updmap xvidtune last mlxprivhost top pmdumplog scriptreplay urlgrabber mstprivhost quotasync chgrp touch neqn fc-cat xmag msgen pack200 mount md5sum sudoreplay ps2ps gmake autom4te dircolors sha256sum pre-grohtml tsort getconf eu-elflint texlua db_log_verify fc-scan getopt pmie2col vi tload ibv_task_pingpong atrm gettext dc db_archive rdma_client xorg-x11-fonts-update-dirs fonttosfnt etex pf2afm aplaymidi mcookie jar nslookup setxkbmap ipmitool mlxdump hwloc-ls realpath ps2ascii ksh mlxmcg pdftex lpstat read dbus-send perldoc pkcs1-conv jdeps jstatd kpsexpand lwp-mirror mailq gnuplot kpsepath sort grep-changelog fgrep eu-readelf numastat shcomp sync flock timed-run cvt rpm composite autoheader setfacl db_printlog db_verify zcmp expand kpseaccess xmllint csplit bdftopcf ypdomainname soelim podselect kmod mono-heapviz alsaloop pmlogmv cut nvidia-bug-report.sh xzgrep pinentry lpstat.cups eu-ar dvired nettle-lfib-stream jinfo c89 mono-service runghc hwloc-bind gtf journalctl dbus-binding-tool check-binary-files hwloc-compress-dir icewm-set-gnomewm perf lpoptions msgconv printafm lpr tput keyctl ex bzless sha512sum withsctp ssh-add mesg findmnt gpgconf host agentxtrap umask raw_ethernet_fs_rate fipshmac gdbus mono-sgen-gdb.py gtester-report ibv_dcini lesspipe.sh mysqlshow piconv xload gtk-query-immodules-2.0-64 rmail.postfix dshbak localectl ipcs gex locale db_checkpoint i2c ldd gs arecordmidi msql2mysql autoupdate find chmod amsstat eu-addr2line rpcgen c++filt sndfile-resample hwloc-ps look ibdmtr genpmda curl-config pmprobe rksh pod2man xzcmp mlxfwreset zipgrep utmpdump more gdk-pixbuf-query-loaders-64 tc_wrap.py rmiregistry gpg-connect-agent xfontsel gsnd xkbcomp mprof-report mktextfm namei gsettings numademo mpi-selector-menu view icewmbg gcc-ranlib hesinfo cvs pckt_drop gnuplot-wx objdump mckey chrt unix-lpr.sh nail mlnx_qcn sss_ssh_knownhostsproxy ibv_uc_pingpong envsubst ghci-7.6.3 mkinitrd autoconf eu-unstrip mysqlcheck ipcrm pango-list lsns loginctl otfdump hwloc-diff mysql_waitpid uniq nvidia-xconfig gvimtutor setup-nsssysinit dvipdf wdctl tee killall cabal mcview ldapsearch sg flex runcon xzegrep gpg2 identify tac colcrt pmgenmap font2c nvidia-cuda-mps-server unpack200 readelf mlxi2c hexdump ssltap ibtopodiff cxpm msgcat update-mime-database pmloglabel mono-sgen xcutsel irb pmjson login factor linux32 machinectl lsb_release vimx gio wget troff busctl lastb pmclient_fg native2ascii mono-service2 ibv_srq_pingpong mknod strace sexp-conv time gio-querymodules-64 Mail du dconf mlnx_get_vfs.pl domainname alsabat systemd-tmpfiles strace-log-merge ibv_rc_pingpong python2.7 sleep cmtime pwdx lpunlock eject mdevices_info ifnames sha224sum koi8rxterm sed getopts xlogo mlxuptime newaliases.postfix aseqnet systemd-firstboot xargs nettle-hash python2.7-config ncursesw5-config pcre-config qperf eu-make-debug-archive newaliases chage build-classpath mysqlaccess bzdiff isosize mstmwrite expr pwmake systemd-escape ncurses5-config xsetroot ibnlparse lstopo lessecho autoreconf gslj orbd clear gctags vncpasswd icewm-session atq mysqlimport rpmkeys xxd xhost ibv_asyncwatch wsgen sotruss mstflint run_perftest_loopback watch net-snmp-config msgfilter systemd-hwdb lastlog slogin gconftool-2 ldapdelete test mst_ib_add pkexec zipcloak rsyslog-recover-qi.pl pkaction unix2dos groff shred itrace xmlcatalog texhash systemd-machine-id-setup flint ibdiagnet_csv2xml.py iecset hwloc-annotate eps2eps autoscan grotty colrm bash glib-gettextize yes lz4 epstopdf gpgparsemail spax pr kill bzcmp mlxdump_ext ypmatch ibv_ud_pingpong aria_ftdump w logname ksh93 od xmodmap gpic pmlogsize p11-kit systemd-nspawn m17n-conv bzip2 timedatectl gresource rping infocmp unmunge nl users minit idlj xstdcmap msgmerge a2p csharp mft_uninstall.sh testgdbm gdk-pixbuf-thumbnailer hsc2hs lpq glib-genmarshal tailf quota hca_self_test.ofed id stty update-ca-trust mlxconfig setreg xzfgrep mv fipscheck ftp-rfc disco sqlsharp join xsetpointer ppc rlogin-cwd vimdiff lchfn tr chacl echo netstat texlinks pkla-check-authorization display strip xdg-settings rpdcp mstdump mkpasswd ping6 mlxphyburn pydoc ps2pdf12 jstat gpgv eu-strings pphs eu-elfcmp jobs zfgrep systemd-delta update-gtk-immodules glib-compile-resources gsettings-data-convert pic mlx_fpga dotlockfile gobject-query redhat_lsb_init Xorg import sftp emacsclient raw_ethernet_lat zless aria_pack msgexec false crlutil nvidia-cuda-mps-control oclock dnsdomainname javac pcp mail fwtrace xdpr awk tclsh8.5 gprof xkibitz my_print_defaults rcopy passmass pod2latex freetype-config bzip2recover bdftruncate x0vncserver yum abs2rel geoiplookup pcp2csv build-classpath-directory otfview znew mstmread aplay gvim nvvs ldapmodify nv-hostengine pl2pm javap pango-view ibsim sss_ssh_authorizedkeys hostid create-jar-links mcra zdiff pathchk /usr/local/sbin: /usr/sbin: rhnsd rhn_check spacewalk-channel rhnreg_ks rhn_register rhn-channel rhn-profile-sync subscription-manager userhelper pifconfig pethtool virt-what abrt-install-ccpp-hook abrt-dbus abrt-configuration abrtd abrt-server abrt-auto-reporting vgcfgrestore selabel_digest resize2fs luserdel bootlist fdisk thin_trim e4defrag tracepath pwhistory_helper mkdumprd mke2fs mkfs.ext2 mkfs.ext3 mkfs.ext4 badblocks mii-diag lpc lgroupmod rpc.statd lsdevinfo ibfindnodesusing.pl ifup alsa-info ibdiscover.pl load_policy rtcwake thin_repair usermod xfs_freeze lvs xfs_mdrestore plipconfig groupmod fsck.xfs lsvpd unix_update readprofile vgreduce losetup sshd-keygen update-alternatives rtas_event_decode selabel_lookup_best_match cracklib-check ntptime partx agetty pvdisplay vmcore-dmesg show_irq_affinity_hints.sh mlnx_net_rules kexec cracklib-unpacker lsprop thin_dump alternatives vendor_pre_uninstall.sh yppoll swaplabel lvchange blockdev ibdatacounts dracut useradd zdump alsa-info.sh lparstat ctrlaltdel smpdump ss swapoff swapon zic ipmaddr sys-unconfig sldd.sh iconvconfig.ppc64le iconvconfig tcsd ibhosts dmsetup lid chcpu cache_dump ibchecknode ibroute depmod vgremove pseries_platform nvme getpcaps ppp-watch lscfg cache_repair xfs_logprint postlock serv_config dumpe2fs nvram udevadm parted lsmod tc ntpdate sestatus fsck.minix rpcinfo pmc groupmems srp_daemon.sh iptables-restore pwunconv routel postqueue ls-vdev lpasswd sysctl e2freefrag dmstats capsh sendmail xfs_db pam_timestamp_check chpasswd lvdisplay hwstamp_ctl lnewusers zramctl yptest quotacheck ibdatacounters lvcreate mkdict vgmknodes iptables-save fixfiles set_irq_affinity_cpulist.sh lspci xtables-multi blkdeactivate postlog fsck lsslot xfs_quota rdisc update_flash_nv srp_daemon bridge saquery ibswitches addpart smpquery sss_cache clockdiff ntpdc ypset runlevel sssd build-locale-archive ntpd nfsidmap ipmievd atrun postcat odp_stat.sh lvconvert e2fsck fsck.ext2 fsck.ext3 fsck.ext4 rtstat ibprintrt.pl ifconfig era_dump xfs_growfs sminfo lvmsadc ibclearcounters dmfilemapd restorecon thin_ls ldattach grpconv vendor_post_uninstall.sh ntpq nvsetenv era_check connectx_port_config postconf delpart try-from vpdupdate era_restore avcstat munged snmpd mountstats mklost+found lvmsar ls-veth snmptrapd route ibsrpdm ibstat phc2sys lvresize cracklib-packer new-kernel-pkg fsck.nfs irqbalance logrotate xfs_rtcp rpc.rquotad ibcacheedit genhomedircon genl exportfs xfs_bmap grpck alsactl cache_writeback newusers selabel_partial_match makedumpfile show_gids mlnx_affinity ofed_uninstall.sh vgexport lvmdump nslcd pvresize partprobe set_irq_affinity_bynode.sh show_irq_affinity.sh dump_fts errinjct hardlink matchpathcon fdformat vgextend fsfreeze ofpathname pwck dhclient postdrop sendmail.postfix vgcfgbackup sulogin hack-coff lpc.cups xfs_info ypbind nameif nstat mkfs.cramfs sim_server activate_firmware nfsstat opensm gssproxy ibaddr mkfs.xfs groupadd halt osmtest lvmpolld lsmcode pvs lvremove start-statd debugfs setpci selinuxexeccon ibportstate rtmon ibcheckerrors vgimportclone e2label tune2fs rtas_dump postfix lnstat dump_mfts.sh thin_restore check_lft_balance.pl ibidsverify.pl cma_roce_tos selabel_lookup ip6tables-save rmmod cache_metadata_size nsm run_srp_daemon runuser xfs_metadump getcap sefcontext_compile ip iptables glibc_post_upgrade.ppc64le fsadm iblinkinfo.pl ibqueryerrors.pl setfiles sys_ident dhclient-script tracepath6 findfs getsebool cbq e2image blkdiscard uuserver ifcfg shutdown smtp-source install-info set_nodedesc.sh xfs_repair rsyslogd rpcdebug lvm mkhomedir_helper pvscan logsave pwconv unsquashfs ntp-keygen e2undo blkmapd vgscan osd_login umount.nfs ibcheckerrs rpc.nfsd iblinkinfo ibtracert cfdisk common_irq_affinity.sh modinfo sasldblistusers2 rtpr selinuxconlist wrapper blkid ibclearerrors lvmconf xqmstats vgsplit postsuper thin_check filefrag adduser redhat_lsb_trigger.ppc64le dump_lfts.sh drmgr cache_check crond pvchange vendstat setenforce addgnupghome tcpdmatch reboot vipw rpc.gssd cracklib-format perfquery sln pivot_root create-cracklib-dict quotaon groupdel ptp4l mkfs xfs_estimate dmeventd gss-server usernetctl show_counters xfs_ncheck vgchange grpunconv quotastats iptunnel dkms resizepart sysctl_perf_tuning xfs_mkfile repquota ip6tables-restore lusermod wipefs sshd ifdown cache_restore arp pvremove clock tickadj ldconfig selinuxdefcon lvreduce vigr quot vgdisplay lchage arping ibacm ibcheckportstate smparquery insmod addnote lvmetad ibprintca.pl switch_root hwclock kpartx ifstat sysinfo-snapshot.py setsebool edquota killall5 pidof anacron service sfdisk vgimport vgrename sm-notify lvmdiskscan lvscan selinuxenabled nologin atd accessdb ibcheckstate userdel lsvio ibnodes weak-modules quotaoff setquota era_invalidate automount xfs_copy sosreport consoletype phc_ctl safe_finger ppc64_cpu mlnx_eswitch_set uesensor rpc.mountd ls-vscsi ibsysstat modprobe ibstatus lgroupadd vgs rtacct pdata_tools telinit setup_mr_cache.sh poweroff lsof slattach visudo ibcheckportwidth update-pciids nscd update_flash smtp-sink mkswap sushell lvmconfig mktree xfs_admin ctstat lvrename ibmirror pam_tally2 chkconfig pam_console_apply xfs_io ib2ib_setup nfsdcltrack mksquashfs umount.nfs4 arpd rtas_ibm_get_vpd setcap rtas_dbg chroot ibqueryerrors grubby timemaster ibchecknet installkernel vgmerge rpc.idmapd create-munge-key routef mount.nfs pvmove ip6tables postmulti ibnetdiscover key.dns_resolver request-key alsabat-test.sh genhostid ibswportwatch.pl postmap init ibprintswitch.pl ether-wake ifenslave selinux_restorecon fstrim xfs_fsr packer lgroupdel vgcreate mount.nfs4 ethtool fsck.cramfs postalias lvextend vgconvert saslpasswd2 netreport mkfs.minix cma_roce_mode ibcheckwidth thin_metadata_size faillock thin_rmap ibcheckport pvck postkick ibrouters pvcreate tcpd vgck rpcbind ping6 opal-prd thin_delta mii-tool showmount ibccquery devlink set_irq_affinity.sh ibping nfsiostat mlnx_tune hvcsadmin unix_chkpwd getenforce luseradd set_poweron_time semodule convertquota applygnupgdefaults fuser ibccconfig compat_gid_gen /opt/ibm/flightlog/bin: decoder /opt/ibutils/bin: ibmsquit ibis dump2slvl.pl ibdiagpath IBMgtSim dump2psl.pl ibdmchk mkSimNodeDir ibdiagui ibdiagnet RunSimTest ibdmtr ibtopodiff ibdmsh ibnlparse ibmssh /opt/ibm/spectrum_mpi/jsm_pmix/bin: jsrun jswait jskill query_env export_slurm_env jsm_simulator js_task_info admin jsproxy jslist export_smpi_env jsm stock /opt/puppetlabs/bin: hiera facter puppet facter-ng.bat /usr/lpp/mmfs/bin: mmtrace mmsysmon.py mmnfsfuncs mmcesnfsmonitor mmjob mmdelcallback tsdf tschfileset tslsdisk tslspolicy tslsfs tsdelsnapshot tslsfileset tsnsdaccess tscrsnapshot tslspool tssnapdir tsedquota tsusercmd tslssnapshot tsstatus mmcrnsd tsgetscsiinfo mmqosnice mmsetquota mmdelfileset tsprpreemptabort cleanupkeystonedb mmsdrfsdef.Linux mmcesuserauthcrservice mmdumpfilocks tschdisk tsaddpdisk tsctl tskafkaauth tsdbfs tscheckquota tsfsctl tsrpldisk tschpdisk tsrecgroupserver tscmd tsreclaimspace tscrrecgroup tschstoragepool tsrestripefs tsdefragfs tsfileid tsdsh tsdeldisk tsquotaon tschfs tsdefedquota tsunmount tsdelpdisk tsressnapshot tscrvdisk tsquotaoff tsexpelnode tslsvdisk tscrfs tschmgr tslsrecgroup tslsrecoverygroupevents tsdelvdisk tsnsddiscover tsdefquotaoff tscrfileset tsdelfs tsdbvdisk tsdelfileset tsadddisk tscachectl tsdefquotaon tschcarrier tsauth tslsqos tslspdisk tsnsdrediscover tsremount tsdelrecgroup tschpool tsrepquota tschqos tschrecgroup tsfsck tsdiag tssbrff mmlsfileset mmexectsmcmd mmgetkafkaspecinfo mmfs mmchconfig ces.snap.py mmperfmon tsgetacl clstrwatchcallbacks mmcessmblsconfig tslsattr mmcesmonitord .links mmnfsgrace mmhelp-apolicy mmpmon mmcesnfsdelexport mmchpolicy gui.snap.py tspcache perfmon.snap.py mmsdrquerydef mmlsqos mmxargs tschattr mmclidecode clstrwatchconsumermanager mmfsctl mmpsnap mmccrnv perf.snap.py mmcespnfsip mmnfsnodeback tsimgrestore mmcesuserauthckservice mmchnodeclass pymmcesnfslsexport.py mmdelacl mmumount mmcrnodeclass mmsysmonc tspcacheevict mmexecvfile sshwrap mmgetifconf mmfs-ppc64-rh4 sysmon.snap.py mmimgrestore mmcesobjaccesslinkfset mmchecksubsys mmcesop tspmon mmdefedquota mmdelsnapshot mmreclaimspace mmsysmoncontrol tsspectrumdiscover mmyfields mmchnode mmrestorefs mmcallhome mmexportfs mmcesnfsloadexport tslspool34 mmnfsmonitor mmsnmpagentd30 tsfindinode mmfsfuncs.Linux mmdumpperfdata mmcesobjcrbase mmdsh objmetric_count.py mmauditmount mmcessmblsexport mmdevdiscover mmlsnode mmautoload mmcesnfscrexport mmchnsd mmfileid mmcesnfsfuncs mmcesrecovernode mmsklmconfig mmlsfs mmcollectdebugdata tseditacl tsbuhelper tslinkfileset tspreparedisk mmrpldisk mmdelnode mmceslog mmcrfsc mmcesblockfuncs mmgensymtable mmfsd mmnfsinstall mmdspmsg mmclone mmchfs mmlsdisk mmnfstakeover tsyselect mmnfsup mmcessmbcrexport tsaddrmap mmnetverify mmchpool msgqueue.snap.py mmcesobjlscfg tsrestorefileset mmbuildgpl mmsmbman tsfindname mmcesloadmonitor mmcesobjaccess mmaddcallback mmcesobjpolicyfuncs mmcessmbdelexport msgqueueDaemonManager core.snap.py tsgskkm mmauth mmedquota mmshutdown tsdbmemleakparse mmadquery mmsdrcli mmccr mmcesobjchstoragepolicy mmcesnfschcfg tswatchmonitor mmmigratefs mmputacl mmlscluster commonsnap.py mmcesservice mmadddisk tslsmgr tssbrindex mmafmlocal mmlsperfdata mmnfsuninstall mmcmi mmcesobjs3 tspcachescan mmlsnsd mmchcluster mmunmount mmnfsquorumloss mmcesnetdeladdress mmlsquota mmces pymmcesnfsfuncs.py tsputacl mmchqos tsprshowfence gpfsrunlevel mmimgbackup mmsdrrestore tsqosnice mmsdrserv mmmsgqueue mmcesmmcdelexport mmlinkfileset mmrestoreconfig mmdelnodeclass mmsmbfuncs lxtrace-4.14.0-115.21.2.el7a.ppc64le mmcesobjcfgman mmfixcfg mmcesnfslsexport tsdbmemleak mmaudit mmcesnfslscfg mmsmbsupportedoptions mmafmconfig mmlscallback mmlsmgr tsbackup mmcesminfuncs mmfsmount mmcesmmcchexport tsrestripefile kdump mmimportfs mmcesobjcrring mmnfs mmcommon mmcesnetmvaddress mmsnmpagentd mmcesobjfuncs gui.callhome.py tsbackup33 lxtrace mmsdrfsdef mmsmb mmobj tsprclear mmceshdfsfuncs mmcesnetworkmonitor tspcacheutil mmqos mmlspolicy mmrestripefs mmcessmbfuncs mmaddnode mmblock mmcrfs mmmount tsprreadres tssklmconfig mmnsddiscover mmprotocoltrace mmglobfuncs tsprreadkeys mmnfsdown gpfs.snap object.snap.py mmcesnetaddaddress mmcesobjchcfg mmrsh mmcesobjmr mmeditacl auditConsumerManager mmlsconfig mmsync mmgetacl mmcesuserauthrmservice mmhealth tsdelacl mmremote mmpercentencode mmcloudfuncs daemonize mmcesnfschexport tsclone callhome.snap.py clstrwatchreplaymanager tsnetverify mmstartup mmcachectl mmgskkm mmdefragfs mmsnapdir tsapolicy mmrcmd mmexpelnode mmsdrquery ece.callhome.py mmchdisk mmcesnetdown mmlslicense mmrestripefile mmcrfileset mmnfscleanup kdump-4.14.0-115.21.2.el7a.ppc64le mmlogmsg mmcessmbexportacl mmchlicense mmsetrcmd tsclwatchrules mmdynamicmap tssetquota tsprreserve wftopics mmvaryonvg mmsnmpagentd10 mmbackupconfig mmdefquotaon mmlsattr mmcesfuncs mmfsadm mmcesmmccrexport runmmfs mmafmcmd ccrrestore mmunlinkfileset basicsnap.py mmafmhomeconfig auth.snap.py fab3.snap.py mmuserauth object.callhome.py mmlogsort mmdf mmcesobjcrstoragepolicy mmdefquotaoff mmtracectl mmdump tsprquery mmfsenv mmfsfuncs mmrepquota mmcesdr mmcesnode tslsquota mmdsm mmdelnsd mmnfsinit mmcrsnapshot mmlockf mmcesauthfuncs network.callhome.py mmglobfuncs.Linux tsprinquiry nfs.snap.py mmcesnetlsaddress mmapplypolicy mmdumpkthreads tswatchgpfsconduit mmcessmbchconfig perfmon.callhome.py mmauditpreunmount mmrcp scpwrap mmremotefs tsunlinkfileset mmcrcluster mmnfspreunmount mmcessmbchexport tsauditconsumer mmchattr mmdeldisk mmfsck smb.snap.py mmcesobjdepstoragepolicy mmcheckquota mmprodname mmdelfs mmcallhremote mmgetstate mmcesuserauthlsservice mmcesnetup mmremotecluster tsstarthelper mmcloudgateway mmgetconfdata tschpolicy mmchmgr tsloadikm mmcesnetchaddress mmsmbvalidoptions mmkeyserv mmchfileset mmwatch tsprregister mmstartpolicy hadoop.snap.py mmquotaoff mmcesmonitor mmquotaon msgqueueservicesmonitormanager mmlspool mmlsmount mmccrmonitor mmbackup mmlsnodeclass mmrefresh mmnfsrecovernode mmpercentdecode wftopichk tspcachesnapdiff mmdiag mmlssnapshot mmcesobjlsstoragepolicy mmafmctl mmstatdcallout mmksh sshscpwrap ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:1017) child config.utilities.macosFirewall 0.000004 ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Linux Checking for program /sw/sources/lsf-tools/2.0/summit/bin/gdb...not found Checking for program /sw/summit/xalt/1.2.1/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/gdb...not found Checking for program /sw/summit/forge/20.0.1/bin/gdb...not found Checking for program /sw/summit/cuda/10.1.243/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/gdb...not found Checking for program /sw/sources/hpss/bin/gdb...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/gdb...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/gdb...not found Checking for program /opt/ibm/csm/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Executing: uname -s stdout: Linux child config.utilities.debuggers 0.018112 ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 15 #define PETSC_VERSION_SUBMINOR 0 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.003134 ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000522 ============================================================================================= TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/git...not found Checking for program /sw/summit/xalt/1.2.1/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/git...not found Checking for program /sw/summit/forge/20.0.1/bin/git...not found Checking for program /sw/summit/cuda/10.1.243/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/git...not found Checking for program /sw/sources/hpss/bin/git...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/git...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/git...not found Checking for program /opt/ibm/csm/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 1.8.3.1 ============================================================================================= TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/hg...not found Checking for program /sw/summit/xalt/1.2.1/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/hg...not found Checking for program /sw/summit/forge/20.0.1/bin/hg...not found Checking for program /sw/summit/cuda/10.1.243/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/hg...not found Checking for program /sw/sources/hpss/bin/hg...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/hg...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/hg...not found Checking for program /opt/ibm/csm/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /usr/local/sbin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /opt/ibm/flightlog/bin/hg...not found Checking for program /opt/ibutils/bin/hg...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/hg...not found Checking for program /opt/puppetlabs/bin/hg...not found Checking for program /usr/lpp/mmfs/bin/hg...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/hg...not found child config.sourceControl 0.008686 ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.15.0-651-g79fd416 Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 79fd41609ac05432092d26d7e1a26f0629926855 Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2021-05-29 15:10:53 -0400 Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD'] stdout: adams/landau-mass-opt Defined "VERSION_GIT" to ""v3.15.0-651-g79fd416"" Defined "VERSION_DATE_GIT" to ""2021-05-29 15:10:53 -0400"" Defined "VERSION_BRANCH_GIT" to ""adams/landau-mass-opt"" child PETSc.options.petscclone 0.070504 ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set ============================================================================================= Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-summit-opt-pgi-kokkos-notpl-cuda10, ignoring environment: arch-summit-opt-gnu-kokkos-notpl-cuda ============================================================================================= No previous hashfile found Setting hashfile: arch-summit-opt-pgi-kokkos-notpl-cuda10/lib/petsc/conf/configure-hash Deleting configure hash file: arch-summit-opt-pgi-kokkos-notpl-cuda10/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-summit-opt-pgi-kokkos-notpl-cuda10/lib/petsc/conf/configure-hash child PETSc.options.arch 0.026450 ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:39) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:85) ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:78) ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:62) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-pgi-kokkos-notpl-cuda10/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:98) child PETSc.options.installDir 0.003125 ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000667 ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.000921 ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1973) CC (set to /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/pgcc) found in environment variables - ignoring since also set on command line CXX (set to /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/pgc++) found in environment variables - ignoring since also set on command line FC (set to /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/pgfortran) found in environment variables - ignoring since also set on command line ============================================================================================= ***** WARNING: F77 (set to /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/pgfortran) found in environment variables - ignoring use ./configure F77=$F77 if you really want to use that value ****** ============================================================================================= ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:2003) ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1943) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1964) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:542) Initialize the compiler and linker flags Initialized CFLAGS to -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Initialized CFLAGS to -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Initialized LDFLAGS to Initialized CUDAFLAGS to -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Initialized CUDAFLAGS to -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Initialized LDFLAGS to Initialized HIPFLAGS to Initialized HIPFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to -Wno-deprecated-gpu-targets Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:717) Locate a functional C compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/mpicc...found Defined make macro "CC" to "mpicc" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm: ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o Testing executable /tmp/petsc-7h9Q3B/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-7h9Q3B/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-7h9Q3B/config.setCompilers/conftest Executing: mpicc --version stdout: pgcc 19.9-0 linuxpower target on Linuxpower PGI Compilers and Tools Copyright (c) 2019, NVIDIA CORPORATION. All rights reserved. Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:756) Locate a functional C preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/mpicc...found Defined make macro "CPP" to "mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:792) Locate a functional CUDA compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/nvcc...not found Checking for program /sw/summit/forge/20.0.1/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/nvcc...found Defined make macro "CUDAC" to "nvcc -ccbin=pgc++" ===== Checking compiler Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Wno-deprecated-gpu-targets /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc -ccbin=pgc++ --version stdout: nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2019 NVIDIA Corporation Built on Sun_Jul_28_19:07:52_PDT_2019 Cuda compilation tools, release 10.1, V10.1.243 ============================================================================================= TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:832) Locate a functional CUDA preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/nvcc...not found Checking for program /sw/summit/forge/20.0.1/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/nvcc...found Defined make macro "CUDAPP" to "nvcc -ccbin=pgc++ -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include __global__ void testFunction() {return;}; Executing: nvcc -ccbin=pgc++ -E -I/tmp/petsc-7h9Q3B/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:866) Locate a functional HIP compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/hipcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/hipcc...not found Checking for program /sw/summit/forge/20.0.1/bin/hipcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/hipcc...not found Checking for program /sw/sources/hpss/bin/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/hipcc...not found Checking for program /opt/ibm/csm/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /usr/local/sbin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /opt/ibm/flightlog/bin/hipcc...not found Checking for program /opt/ibutils/bin/hipcc...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/hipcc...not found Checking for program /opt/puppetlabs/bin/hipcc...not found Checking for program /usr/lpp/mmfs/bin/hipcc...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/hipcc...not found Checking for program /sw/sources/lsf-tools/2.0/summit/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/opt/rocm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/opt/rocm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/forge/20.0.1/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/opt/rocm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/opt/rocm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/sources/hpss/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/csm/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/flightlog/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibutils/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/puppetlabs/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/lpp/mmfs/bin/opt/rocm/bin/hipcc...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found ============================================================================================= TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:902) Placeholder for now ============================================================================================= TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:923) Locate a functional SYCL compiler ============================================================================================= TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:949) Placeholder for now ============================================================================================= TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1036) Locate a functional Cxx compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicxx...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicxx...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/mpicxx...found Defined make macro "CXX" to "mpicxx" ===== Checking compiler Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm: ======== Checking running linked program ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o Testing executable /tmp/petsc-7h9Q3B/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-7h9Q3B/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-7h9Q3B/config.setCompilers/conftest Executing: mpicxx --version stdout: pgc++ 19.9-0 linuxpower target on Linuxpower PGI Compilers and Tools Copyright (c) 2019, NVIDIA CORPORATION. All rights reserved. ============================================================================================= TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1077) Locate a functional Cxx preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicxx...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicxx...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/mpicxx...found Defined make macro "CXXPP" to "mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicxx -E -I/tmp/petsc-7h9Q3B/config.setCompilers /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cc Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1176) Locate a functional Fortran compiler ============================================================================================= TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1382) ============================================================================================= TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1481) Check that the archiver exists and can make a library usable by the compiler Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ar...not found Checking for program /sw/summit/xalt/1.2.1/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/ar...not found Checking for program /sw/summit/forge/20.0.1/bin/ar...not found Checking for program /sw/summit/cuda/10.1.243/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ar...not found Checking for program /sw/sources/hpss/bin/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ar...not found Checking for program /opt/ibm/csm/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ranlib...not found Checking for program /sw/summit/xalt/1.2.1/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/ranlib...not found Checking for program /sw/summit/forge/20.0.1/bin/ranlib...not found Checking for program /sw/summit/cuda/10.1.243/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ranlib...not found Checking for program /sw/sources/hpss/bin/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ranlib...not found Checking for program /opt/ibm/csm/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-7h9Q3B/config.setCompilers/libconf1.a /tmp/petsc-7h9Q3B/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-7h9Q3B/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ar...not found Checking for program /sw/summit/xalt/1.2.1/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/ar...not found Checking for program /sw/summit/forge/20.0.1/bin/ar...not found Checking for program /sw/summit/cuda/10.1.243/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ar...not found Checking for program /sw/sources/hpss/bin/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ar...not found Checking for program /opt/ibm/csm/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ranlib...not found Checking for program /sw/summit/xalt/1.2.1/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/ranlib...not found Checking for program /sw/summit/forge/20.0.1/bin/ranlib...not found Checking for program /sw/summit/cuda/10.1.243/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ranlib...not found Checking for program /sw/sources/hpss/bin/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ranlib...not found Checking for program /opt/ibm/csm/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-7h9Q3B/config.setCompilers/libconf1.a /tmp/petsc-7h9Q3B/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-7h9Q3B/config.setCompilers/libconf1.a ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -L/tmp/petsc-7h9Q3B/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ============================================================================================= TESTING: checkArchiverRecipeArgfile from config.setCompilers(config/BuildSystem/config/setCompilers.py:1545) Checks if AR handles @ notation Executing: /usr/bin/ar cr checkRecipeArgfile.a @checkRecipeArgfile.args Defined make macro "AR_ARGFILE" to "yes" ============================================================================================= TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1625) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker mpicc using flags ['-shared'] Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/mpicc...found Defined make macro "LD_SHARED" to "mpicc" Executing: mpicc --help | head -n 20 Executing: mpicc -show stdout: pgcc -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/include -lpthread -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/lib -lmpiprofilesupport -lmpi_ibm Trying no specific compiler flag for PIC code since MPI compiler or current flags seem to provide such a flag with -fPIC Trying C compiler flag Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest -shared -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o Valid C linker flag -shared ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /tmp/petsc-7h9Q3B/config.setCompilers/libconftest.so -shared -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -L/tmp/petsc-7h9Q3B/config.setCompilers -lconftest Using shared linker mpicc with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux ============================================================================================= TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1325) Determine the PIC option for each compiler Executing: mpicxx --help | head -n 20 Executing: mpicxx -show stdout: pgc++ -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/include -lpthread -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/lib -lmpiprofilesupport -lmpi_ibm Trying Cxx compiler flag -PIC for PIC code Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -PIC /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: pgc++-Error-Unknown switch: -PIC Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -PIC pgc++-Error-Unknown switch: -PIC PETSc Error: No output file produced Rejecting compiler flag -PIC due to nonzero status from link Rejecting compiler flag -PIC due to pgc++-Error-Unknown switch: -PIC PETSc Error: No output file produced Rejected Cxx compiler flag -PIC because shared linker cannot handle it Trying Cxx compiler flag -fPIC for PIC code Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -fPIC /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC Added Cxx compiler flag -fPIC ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -fPIC /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /tmp/petsc-7h9Q3B/config.setCompilers/libconftest.so -shared -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o Accepted Cxx compiler flag -fPIC for PIC code Trying CUDA compiler flag -Xcompiler -fPIC for PIC code Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC Added CUDA compiler flag -Xcompiler -fPIC ===== Checking linker Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /tmp/petsc-7h9Q3B/config.setCompilers/libconftest.so -shared -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o Accepted CUDA compiler flag -Xcompiler -fPIC for PIC code ============================================================================================= TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1738) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Executing: uname -s stdout: Linux Executing: mpicc -V stdout: pgcc 19.9-0 linuxpower target on Linuxpower PGI Compilers and Tools Copyright (c) 2019, NVIDIA CORPORATION. All rights reserved. Trying C linker flag -Wl,-rpath, Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc Executing: uname -s stdout: Linux Executing: mpicc -V stdout: pgcc 19.9-0 linuxpower target on Linuxpower PGI Compilers and Tools Copyright (c) 2019, NVIDIA CORPORATION. All rights reserved. Trying Cxx linker flag -Wl,-rpath, Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -fPIC /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc Executing: uname -s stdout: Linux Executing: mpicc -V stdout: pgcc 19.9-0 linuxpower target on Linuxpower PGI Compilers and Tools Copyright (c) 2019, NVIDIA CORPORATION. All rights reserved. Trying CUDA linker flag -Wl,-rpath, Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc -ccbin=pgc++ -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lineinfo Rejecting linker flag -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc due to nonzero status from link Linker output before filtering: /usr/bin/ld: cannot find -lineinfo : Linker output after filtering: /usr/bin/ld: cannot find -lineinfo: Rejected CUDA linker flag -Wl,-rpath, Trying CUDA linker flag -R Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc -ccbin=pgc++ -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lineinfo Rejecting linker flag -R/gpfs/alpine/csc314/scratch/adams/petsc due to nonzero status from link Linker output before filtering: /usr/bin/ld: cannot find -lineinfo : Linker output after filtering: /usr/bin/ld: cannot find -lineinfo: Rejected CUDA linker flag -R Trying CUDA linker flag -rpath Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc -ccbin=pgc++ -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lineinfo Rejecting linker flag -rpath /gpfs/alpine/csc314/scratch/adams/petsc due to nonzero status from link Linker output before filtering: /usr/bin/ld: cannot find -lineinfo : Linker output after filtering: /usr/bin/ld: cannot find -lineinfo: Rejected CUDA linker flag -rpath Trying CUDA linker flag -Wl,-R, Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc -ccbin=pgc++ -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lineinfo Rejecting linker flag -Wl,-R,/gpfs/alpine/csc314/scratch/adams/petsc due to nonzero status from link Linker output before filtering: /usr/bin/ld: cannot find -lineinfo : Linker output after filtering: /usr/bin/ld: cannot find -lineinfo: Rejected CUDA linker flag -Wl,-R, ============================================================================================= TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1777) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Executing: mpicc -o /tmp/petsc-7h9Q3B/config.setCompilers/libconftest.so -shared -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ============================================================================================= TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1823) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker mpicc using flags ['-shared'] Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "mpicc" Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest -shared -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -ldl Valid C linker flag -shared ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: mpicc -o /tmp/petsc-7h9Q3B/config.setCompilers/libconftest.so -shared -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -ldl ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/tmp/petsc-7h9Q3B/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -ldl Using dynamic linker mpicc with flags ['-shared'] and library extension so ============================================================================================= TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1872) Output module data as defines and substitutions Substituting "CC" with "mpicc" Substituting "CFLAGS" with "-fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CUDAC" with "nvcc -ccbin=pgc++" Substituting "CUDAFLAGS" with "-Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC" Substituting "CUDAPP" with "nvcc -ccbin=pgc++ -E" Substituting "CUDAPPFLAGS" with "-Wno-deprecated-gpu-targets" Substituting "CXX" with "mpicxx" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "-fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "" Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 25.794930 ============================================================================================= TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.001905 ============================================================================================= TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:82) Get the default compiler flags Defined make macro "C_VERSION" to "pgcc 19.9-0 linuxpower target on Linuxpower " Ignoring default options which were overridden using --CFLAGS -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Trying C compiler flag -O0 Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 Added C compiler flag -O0 Defined make macro "Cxx_VERSION" to "pgc++ 19.9-0 linuxpower target on Linuxpower " Ignoring default options which were overridden using --CXXFLAGS -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 Trying Cxx compiler flag -O0 Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 Added Cxx compiler flag -O0 Defined make macro "CUDA_VERSION" to "nvcc: NVIDIA (R) Cuda compiler driver" Ignoring default options which were overridden using --CUDAFLAGS -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Trying CUDA compiler flag -g Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -Wno-deprecated-gpu-targets /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g Added CUDA compiler flag -g ============================================================================================= TESTING: checkIntelHardwareSupport from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:173) Use Linux/MacOS commands to determine what operations the hardware supports Executing: lscpu stdout: Architecture: ppc64le Byte Order: Little Endian CPU(s): 128 On-line CPU(s) list: 0-127 Thread(s) per core: 4 Core(s) per socket: 16 Socket(s): 2 NUMA node(s): 6 Model: 2.1 (pvr 004e 1201) Model name: POWER9, altivec supported CPU max MHz: 3800.0000 CPU min MHz: 2300.0000 L1d cache: 32K L1i cache: 32K L2 cache: 512K L3 cache: 10240K NUMA node0 CPU(s): 0-63 NUMA node8 CPU(s): 64-127 NUMA node252 CPU(s): NUMA node253 CPU(s): NUMA node254 CPU(s): NUMA node255 CPU(s): ============================================================================================= TESTING: checkCompilerMacros from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:164) Save the list of CPP macros defined by the C and C++ compiler, does not work for all compilers Executing: mpicc -c -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.compilerFlags/conftest.c -E -dM stdout: #define __STDC_HOSTED__ 1 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __power__ 1 #define __powerpc__ 1 #define __powerpc64__ 1 #define __PPC__ 1 #define __PPC64__ 1 #define __LP64__ 1 #define __LITTLE_ENDIAN__ 1 #define __CHAR_UNSIGNED__ 1 #define _CALL_ELF 2 #define __PGLLVM__ 1 #define __extension__ #define __linux__ 1 #define __linux 1 #define linux 1 #define __PIC__ 1 #define LANDAU_DIM 2 #define LANDAU_MAX_SPECIES 10 #define PETSC_HAVE_CUDA_ATOMIC 1 #define LANDAU_MAX_Q 4 #define __pgnu_vsn 40805 #define __PGI 1 #define __LINE__ 0 #define __FILE__ 1 #define __DATE__ "May 29 2021" #define __TIME__ "16:22:32" #define __STDC__ 1 #define __STDC_VERSION__ 199901L #define __PGIC__ 19 #define __PGIC_MINOR__ 9 #define __PGIC_PATCHLEVEL__ 0 # 1 "/tmp/petsc-7h9Q3B/config.compilerFlags/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.compilerFlags/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" // /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h:23 #define __STDC_HOSTED__ 1 # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" // /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h:26 #define __STDC_NO_ATOMICS__ 1 # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" // /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h:30 #define __STDC_NO_THREADS__ 1 # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" // /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h:42 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; // /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h:73 #define __builtin_extract_return_addr(x) ( x) #define __builtin_frob_return_addr(x) ( x) # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; // /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h:111 #define __builtin_va_list __pgi_va_list // /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h:115 #define __builtin_va_start(ap,param) ( __builtin_pgi_va_start( &( ap) , param )) #define __builtin_va_arg(ap,type) ( *( type* )__builtin_pgi_va_arg (& (ap ), ( type* )0 )) #define __builtin_va_copy(dst,src) ( (dst ) = ( src) ) // /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h:127 #define __builtin_va_end(ap) ( (void )0 ) # 1 "/tmp/petsc-7h9Q3B/config.compilerFlags/conftest.c" Executing: mpicxx -c -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC /tmp/petsc-7h9Q3B/config.compilerFlags/conftest.cc -E -dM stdout: # 1 "/tmp/petsc-7h9Q3B/config.compilerFlags/conftest.cc" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include-gcc48/_cplus_macros.h" 1 # 1 "/tmp/petsc-7h9Q3B/config.compilerFlags/conftest.cc" 2 # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_cplus_preinclude.h" 1 # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_cplus_preinclude.h" typedef struct __va_list_tag { void *__args; } *__pgi_va_list; extern "C" void __builtin_pgi_va_start(...); extern "C" void* __builtin_pgi_va_arg(...); typedef long double __float128; # 1 "/tmp/petsc-7h9Q3B/config.compilerFlags/conftest.cc" 2 child config.compilerFlags 1.897457 Executing: mpicc --help | head -n 20 ============================================================================================= TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1459) Check for -std=c99 or equivalent flag Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Output from compiling with -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 Accepted C99 compile flag: ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:158) Check for the C/CXX restrict keyword Executing: mpicc -V stdout: pgcc 19.9-0 linuxpower target on Linuxpower PGI Compilers and Tools Copyright (c) 2019, NVIDIA CORPORATION. All rights reserved. Detected PGI compiler Defined "C_RESTRICT" to " " compilers: PGI restrict word is broken cannot handle [restrict] C restrict keyword ============================================================================================= TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:413) Activate format string checking if using the GNU compilers ============================================================================================= TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:128) Check for C inline keyword ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.compilers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ============================================================================================= TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:424) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.compilers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.compilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.compilers/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ============================================================================================= TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:222) Determines the libraries needed to link with C compiled code ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.compilers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.compilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.compilers/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.compilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC /tmp/petsc-7h9Q3B/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: "/tmp/petsc-7h9Q3B/config.compilers/conftest.cc", line 5: warning: last line of file ends without a newline ^ Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicxx -o /tmp/petsc-7h9Q3B/config.compilers/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 /tmp/petsc-7h9Q3B/config.compilers/conftest.o /tmp/petsc-7h9Q3B/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1410) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Rejected C compiler flag -MMD -MP Trying C compiler flag -MMD Rejected C compiler flag -MMD because no dependency file (/tmp/petsc-7h9Q3B/config.setCompilers/conftest.d) was generated Trying C compiler flag -xMMD Rejected C compiler flag -xMMD Trying C compiler flag -qmakedep=gcc Rejected C compiler flag -qmakedep=gcc Trying C compiler flag -MD Rejected C compiler flag -MD because no dependency file (/tmp/petsc-7h9Q3B/config.setCompilers/conftest.d) was generated Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 -MMD -MP /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: pgcc-Error-Unknown switch: -MP Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 -MMD -MP pgcc-Error-Unknown switch: -MP PETSc Error: No output file produced Rejecting compiler flag -MMD -MP due to nonzero status from link Rejecting compiler flag -MMD -MP due to pgcc-Error-Unknown switch: -MP PETSc Error: No output file produced Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 -MMD /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 -MMD Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 -xMMD /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: pgcc-Error-Unknown switch: -xMMD Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 -xMMD pgcc-Error-Unknown switch: -xMMD PETSc Error: No output file produced Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to pgcc-Error-Unknown switch: -xMMD PETSc Error: No output file produced Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 -qmakedep=gcc /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: pgcc-Error-Unknown switch: -qmakedep=gcc Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 -qmakedep=gcc pgcc-Error-Unknown switch: -qmakedep=gcc PETSc Error: No output file produced Rejecting compiler flag -qmakedep=gcc due to nonzero status from link Rejecting compiler flag -qmakedep=gcc due to pgcc-Error-Unknown switch: -qmakedep=gcc PETSc Error: No output file produced Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 -MD /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 -MD Trying Cxx compiler flag -MMD -MP Rejected Cxx compiler flag -MMD -MP Trying Cxx compiler flag -MMD Rejected Cxx compiler flag -MMD because no dependency file (/tmp/petsc-7h9Q3B/config.setCompilers/conftest.d) was generated Trying Cxx compiler flag -xMMD Rejected Cxx compiler flag -xMMD Trying Cxx compiler flag -qmakedep=gcc Rejected Cxx compiler flag -qmakedep=gcc Trying Cxx compiler flag -MD Rejected Cxx compiler flag -MD because no dependency file (/tmp/petsc-7h9Q3B/config.setCompilers/conftest.d) was generated Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC -MMD -MP /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: pgc++-Error-Unknown switch: -MP Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -MMD -MP pgc++-Error-Unknown switch: -MP PETSc Error: No output file produced Rejecting compiler flag -MMD -MP due to nonzero status from link Rejecting compiler flag -MMD -MP due to pgc++-Error-Unknown switch: -MP PETSc Error: No output file produced Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC -MMD /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -MMD Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC -xMMD /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: pgc++-Error-Unknown switch: -xMMD Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -xMMD pgc++-Error-Unknown switch: -xMMD PETSc Error: No output file produced Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to pgc++-Error-Unknown switch: -xMMD PETSc Error: No output file produced Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC -qmakedep=gcc /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: pgc++-Error-Unknown switch: -qmakedep=gcc Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -qmakedep=gcc pgc++-Error-Unknown switch: -qmakedep=gcc PETSc Error: No output file produced Rejecting compiler flag -qmakedep=gcc due to nonzero status from link Rejecting compiler flag -qmakedep=gcc due to pgc++-Error-Unknown switch: -qmakedep=gcc PETSc Error: No output file produced Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC -MD /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -MD Trying CUDA compiler flag -MMD -MP Rejected CUDA compiler flag -MMD -MP Trying CUDA compiler flag -MMD Rejected CUDA compiler flag -MMD Trying CUDA compiler flag -xMMD Rejected CUDA compiler flag -xMMD Trying CUDA compiler flag -qmakedep=gcc Rejected CUDA compiler flag -qmakedep=gcc Trying CUDA compiler flag -MD Rejected CUDA compiler flag -MD Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -MMD -MP -Wno-deprecated-gpu-targets /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -MMD -MP nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Rejecting compiler flag -MMD -MP due to nonzero status from link Rejecting compiler flag -MMD -MP due to nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -MMD -Wno-deprecated-gpu-targets /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -MMD nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Rejecting compiler flag -MMD due to nonzero status from link Rejecting compiler flag -MMD due to nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -xMMD -Wno-deprecated-gpu-targets /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'xMMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -xMMD nvcc fatal : Unknown option 'xMMD' PETSc Error: No output file produced Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to nvcc fatal : Unknown option 'xMMD' PETSc Error: No output file produced Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -qmakedep=gcc -Wno-deprecated-gpu-targets /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'qmakedep' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -qmakedep=gcc nvcc fatal : Unknown option 'qmakedep' PETSc Error: No output file produced Rejecting compiler flag -qmakedep=gcc due to nonzero status from link Rejecting compiler flag -qmakedep=gcc due to nvcc fatal : Unknown option 'qmakedep' PETSc Error: No output file produced Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -MD -Wno-deprecated-gpu-targets /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -MD nvcc fatal : Unknown option 'MD' PETSc Error: No output file produced Rejecting compiler flag -MD due to nonzero status from link Rejecting compiler flag -MD due to nvcc fatal : Unknown option 'MD' PETSc Error: No output file produced Executing: mpicxx --help | head -n 20 ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:158) Check for the C/CXX restrict keyword Executing: mpicc -V stdout: pgcc 19.9-0 linuxpower target on Linuxpower PGI Compilers and Tools Copyright (c) 2019, NVIDIA CORPORATION. All rights reserved. Detected PGI compiler Defined "CXX_RESTRICT" to " " compilers: PGI restrict word is broken cannot handle [restrict] Cxx restrict keyword ============================================================================================= TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:471) Determine the CXX dialect supported by the compiler(language) [and correspoding compiler option - if any]. isGNU indicates if the compiler is g++. -with--dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 for Cxx with flag: Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: "/tmp/petsc-7h9Q3B/config.setCompilers/conftest.cc", line 22: warning: statement is unreachable return 0; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4) + (int)std::real(I); ; return 0; } Output from compiling with -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 "/tmp/petsc-7h9Q3B/config.setCompilers/conftest.cc", line 22: warning: statement is unreachable return 0; ^ ============================================================================================= TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:443) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Output from compiling with -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 ============================================================================================= TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:143) Check for C++ inline keyword ===== Checking compiler Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.compilers/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC /tmp/petsc-7h9Q3B/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ============================================================================================= TESTING: checkCxxComplexFix from config.compilers(config/BuildSystem/config/compilers.py:566) Determine if the CXX compiler supports utilities provided by petsccxxcomplexfix.h ===== Checking compiler Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.compilers/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC /tmp/petsc-7h9Q3B/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define Type int #define PetscReal double #define PetscComplex std::complex /* The two lines, from petsccxxcomplexfix.h, can cause the combination "C++14 + GCC-4.x libstdc++ library" to fail, complaining imag() is not marked const. If the compiler can compile these two lines, it should be able to compile other lines. */ static inline PetscComplex operator-(const Type& lhs, const PetscComplex& rhs) { return PetscReal(lhs) - const_cast(rhs); } static inline PetscComplex operator/(const Type& lhs, const PetscComplex& rhs) { return PetscReal(lhs) / const_cast(rhs); } int main() { Type x = 2; PetscComplex y(1.0,1.0),z,w; z = x - y; w = x / y; std::cout << z << w; ; return 0; } the CXX compiler supports petsccxxcomplexfix.h Defined "HAVE_CXX_COMPLEX_FIX" to "1" ============================================================================================= TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:595) Determines the libraries needed to link with C++ from C and Fortran ===== Checking compiler Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.compilers/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC /tmp/petsc-7h9Q3B/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.compilers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicc -o /tmp/petsc-7h9Q3B/config.compilers/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.compilers/conftest.o /tmp/petsc-7h9Q3B/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.compilers/confc.o: In function `asub()': /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:7: undefined reference to `__cxa_get_exception_ptr' /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-7h9Q3B/config.compilers/confc.o: In function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/lib/gcc/ppc64le-redhat-linux/4.8.5/../../../../include/c++/4.8.5/bits/basic_ios.h:152: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /tmp/petsc-7h9Q3B/config.compilers/confc.o: In function `__gnu_cxx::new_allocator::deallocate(int*, unsigned long)': /usr/lib/gcc/ppc64le-redhat-linux/4.8.5/../../../../include/c++/4.8.5/ext/new_allocator.h:110: undefined reference to `operator delete(void*)' /tmp/petsc-7h9Q3B/config.compilers/confc.o: In function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/lib/gcc/ppc64le-redhat-linux/4.8.5/../../../../include/c++/4.8.5/ostream:535: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, long)' /tmp/petsc-7h9Q3B/config.compilers/confc.o: In function `__sti___46__tmp_petsc_7h9Q3B_config_compilers_conftest_cc__Z4asubv': /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:74: undefined reference to `std::ios_base::Init::Init()' /tmp/petsc-7h9Q3B/config.compilers/confc.o:(.data+0x0): undefined reference to `typeinfo for int' /tmp/petsc-7h9Q3B/config.compilers/confc.o:(.toc+0x0): undefined reference to `typeinfo for int' /tmp/petsc-7h9Q3B/config.compilers/confc.o:(.toc+0x8): undefined reference to `std::cout' /tmp/petsc-7h9Q3B/config.compilers/confc.o:(.toc+0x10): undefined reference to `std::ios_base::Init::~Init()' /tmp/petsc-7h9Q3B/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.compilers/conftest' Linker output before filtering: /tmp/petsc-7h9Q3B/config.compilers/confc.o: In function `asub()': /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:7: undefined reference to `__cxa_get_exception_ptr' /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-7h9Q3B/config.compilers/confc.o: In function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/lib/gcc/ppc64le-redhat-linux/4.8.5/../../../../include/c++/4.8.5/bits/basic_ios.h:152: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /tmp/petsc-7h9Q3B/config.compilers/confc.o: In function `__gnu_cxx::new_allocator::deallocate(int*, unsigned long)': /usr/lib/gcc/ppc64le-redhat-linux/4.8.5/../../../../include/c++/4.8.5/ext/new_allocator.h:110: undefined reference to `operator delete(void*)' /tmp/petsc-7h9Q3B/config.compilers/confc.o: In function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/lib/gcc/ppc64le-redhat-linux/4.8.5/../../../../include/c++/4.8.5/ostream:535: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, long)' /tmp/petsc-7h9Q3B/config.compilers/confc.o: In function `__sti___46__tmp_petsc_7h9Q3B_config_compilers_conftest_cc__Z4asubv': /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:74: undefined reference to `std::ios_base::Init::Init()' /tmp/petsc-7h9Q3B/config.compilers/confc.o:(.data+0x0): undefined reference to `typeinfo for int' /tmp/petsc-7h9Q3B/config.compilers/confc.o:(.toc+0x0): undefined reference to `typeinfo for int' /tmp/petsc-7h9Q3B/config.compilers/confc.o:(.toc+0x8): undefined reference to `std::cout' /tmp/petsc-7h9Q3B/config.compilers/confc.o:(.toc+0x10): undefined reference to `std::ios_base::Init::~Init()' /tmp/petsc-7h9Q3B/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.compilers/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.compilers/confc.o: In function `asub()': /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:7: undefined reference to `__cxa_get_exception_ptr' /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-7h9Q3B/config.compilers/confc.o: In function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/lib/gcc/ppc64le-redhat-linux/4.8.5/../../../../include/c++/4.8.5/bits/basic_ios.h:152: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /tmp/petsc-7h9Q3B/config.compilers/confc.o: In function `__gnu_cxx::new_allocator::deallocate(int*, unsigned long)': /usr/lib/gcc/ppc64le-redhat-linux/4.8.5/../../../../include/c++/4.8.5/ext/new_allocator.h:110: undefined reference to `operator delete(void*)' /tmp/petsc-7h9Q3B/config.compilers/confc.o: In function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/lib/gcc/ppc64le-redhat-linux/4.8.5/../../../../include/c++/4.8.5/ostream:535: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, long)' /tmp/petsc-7h9Q3B/config.compilers/confc.o: In function `__sti___46__tmp_petsc_7h9Q3B_config_compilers_conftest_cc__Z4asubv': /tmp/petsc-7h9Q3B/config.compilers/conftest.cc:74: undefined reference to `std::ios_base::Init::Init()' /tmp/petsc-7h9Q3B/config.compilers/confc.o:(.data+0x0): undefined reference to `typeinfo for int' /tmp/petsc-7h9Q3B/config.compilers/confc.o:(.toc+0x0): undefined reference to `typeinfo for int' /tmp/petsc-7h9Q3B/config.compilers/confc.o:(.toc+0x8): undefined reference to `std::cout' /tmp/petsc-7h9Q3B/config.compilers/confc.o:(.toc+0x10): undefined reference to `std::ios_base::Init::~Init()' /tmp/petsc-7h9Q3B/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.compilers/conftest': Executing: uname -s stdout: Linux ===== Checking compiler Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.compilers/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC /tmp/petsc-7h9Q3B/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.compilers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicc -o /tmp/petsc-7h9Q3B/config.compilers/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.compilers/conftest.o /tmp/petsc-7h9Q3B/config.compilers/confc.o -lstdc++ -ldl compilers: C++ requires -lstdc++ to link with C compiler Executing: mpicxx -V stdout: pgc++ 19.9-0 linuxpower target on Linuxpower PGI Compilers and Tools Copyright (c) 2019, NVIDIA CORPORATION. All rights reserved. ============================================================================================= TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:471) Determine the CXX dialect supported by the compiler(language) [and correspoding compiler option - if any]. isGNU indicates if the compiler is g++. -with--dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 for CUDA with flag: Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -Wno-deprecated-gpu-targets /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 2 stderr: "/usr/lib/gcc/ppc64le-redhat-linux/4.8.5/../../../../include/c++/4.8.5/bits/c++ 0x_warning.h", line 32: catastrophic error: #error directive: This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4) + (int)std::real(I); ; return 0; } Output from compiling with -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g "/usr/lib/gcc/ppc64le-redhat-linux/4.8.5/../../../../include/c++/4.8.5/bits/c++ 0x_warning.h", line 32: catastrophic error: #error directive: This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu". Compilation terminated. PETSc Error: No output file produced Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to "/usr/lib/gcc/ppc64le-redhat-linux/4.8.5/../../../../include/c++/4.8.5/bits/c++ 0x_warning.h", line 32: catastrophic error: #error directive: This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu". Compilation terminated. PETSc Error: No output file produced checkCxxDialect: checking CXX14 for CUDA with flag: -std=c++14 Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -std=c++14 -Wno-deprecated-gpu-targets /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 2 stderr: nvcc warning : The -std=c++14 flag is not supported with the configured host compiler. Flag will be ignored. "/usr/lib/gcc/ppc64le-redhat-linux/4.8.5/../../../../include/c++/4.8.5/bits/c++ 0x_warning.h", line 32: catastrophic error: #error directive: This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4) + (int)std::real(I); ; return 0; } Output from compiling with -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -std=c++14 nvcc warning : The -std=c++14 flag is not supported with the configured host compiler. Flag will be ignored. "/usr/lib/gcc/ppc64le-redhat-linux/4.8.5/../../../../include/c++/4.8.5/bits/c++ 0x_warning.h", line 32: catastrophic error: #error directive: This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu". Compilation terminated. PETSc Error: No output file produced Rejecting compiler flag -std=c++14 due to nonzero status from link Rejecting compiler flag -std=c++14 due to nvcc warning : The -std=c++14 flag is not supported with the configured host compiler. Flag will be ignored. "/usr/lib/gcc/ppc64le-redhat-linux/4.8.5/../../../../include/c++/4.8.5/bits/c++ 0x_warning.h", line 32: catastrophic error: #error directive: This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu". Compilation terminated. PETSc Error: No output file produced checkCxxDialect: checking CXX11 for CUDA with flag: Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -Wno-deprecated-gpu-targets /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 2 stderr: "/usr/lib/gcc/ppc64le-redhat-linux/4.8.5/../../../../include/c++/4.8.5/bits/c++ 0x_warning.h", line 32: catastrophic error: #error directive: This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; ; return 0; } Output from compiling with -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g "/usr/lib/gcc/ppc64le-redhat-linux/4.8.5/../../../../include/c++/4.8.5/bits/c++ 0x_warning.h", line 32: catastrophic error: #error directive: This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu". Compilation terminated. PETSc Error: No output file produced Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to "/usr/lib/gcc/ppc64le-redhat-linux/4.8.5/../../../../include/c++/4.8.5/bits/c++ 0x_warning.h", line 32: catastrophic error: #error directive: This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu". Compilation terminated. PETSc Error: No output file produced checkCxxDialect: checking CXX11 for CUDA with flag: -std=c++11 Defined "HAVE_CUDA_DIALECT_CXX11" to "1" Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -std=c++11 -Wno-deprecated-gpu-targets /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; ; return 0; } Output from compiling with -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -std=c++11 ============================================================================================= TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1537) child config.compilers 12.304774 ============================================================================================= TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.closure/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 2 stderr: PGC-S-0037-Syntax error: Recovery attempted by deleting '^' (/tmp/petsc-7h9Q3B/config.utilities.closure/conftest.c: 6) PGC/power Linux 19.9-0: compilation completed with severe errors Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link child config.utilities.closure 0.114321 child config.compilersFortran 0.000021 ============================================================================================= TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:107) ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.headers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.headers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.headers/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.headers/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-7h9Q3B/config.headers/conftest to see if it can be run Executing: /tmp/petsc-7h9Q3B/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-7h9Q3B/config.headers/conftest ============================================================================================= TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:140) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c ============================================================================================= TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:175) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.headers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:197) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ============================================================================================= TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.headers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file dos.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file dos.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file dos.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file io.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file io.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file io.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file machine/endian.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file machine/endian.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file machine/endian.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file sys/systeminfo.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file sys/systeminfo.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file sys/systeminfo.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file direct.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file direct.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file direct.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file Ws2tcpip.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file Ws2tcpip.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file Ws2tcpip.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file WindowsX.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file WindowsX.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file WindowsX.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file ieeefp.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file ieeefp.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file ieeefp.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file immintrin.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file immintrin.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file immintrin.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file zmmintrin.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file zmmintrin.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file zmmintrin.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file dos.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file dos.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file dos.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file io.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file io.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file io.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file machine/endian.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file machine/endian.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file machine/endian.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file sys/systeminfo.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file sys/systeminfo.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file sys/systeminfo.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file direct.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file direct.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file direct.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file Ws2tcpip.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file Ws2tcpip.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file Ws2tcpip.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file WindowsX.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file WindowsX.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file WindowsX.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file ieeefp.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file ieeefp.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file ieeefp.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file immintrin.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file immintrin.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file immintrin.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file zmmintrin.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file zmmintrin.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file zmmintrin.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ============================================================================================= TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.headers/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 8.266099 ============================================================================================= TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.headers -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.utilities.cacheDetails/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.cacheDetails/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-7h9Q3B/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-7h9Q3B/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-7h9Q3B/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "32" child config.utilities.cacheDetails 0.817737 ============================================================================================= TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:42) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ============================================================================================= TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:48) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Possible ERROR while running compiler: exit code 2 stderr: PGC-S-0040-Illegal use of symbol, __int64 (/tmp/petsc-7h9Q3B/config.types/conftest.c: 11) PGC-W-0156-Type not specified, 'int' assumed (/tmp/petsc-7h9Q3B/config.types/conftest.c: 11) PGC/power Linux 19.9-0: compilation completed with severe errors Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ============================================================================================= TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:54) Checks for types associated with sizes, such as size_t. Checking for type: size_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ============================================================================================= TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:64) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ============================================================================================= TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:59) Checks for types associated with integers, such as int32_t. Checking for type: int32_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ============================================================================================= TESTING: checkPID from config.types(config/BuildSystem/config/types.py:70) Checks for pid_t, and defines it if necessary Checking for type: pid_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ============================================================================================= TESTING: checkUID from config.types(config/BuildSystem/config/types.py:74) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types /tmp/petsc-7h9Q3B/config.types/conftest.c ============================================================================================= TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:81) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.types/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_C99_COMPLEX" to "1" ============================================================================================= TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:92) Check for complex numbers in namespace std ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC /tmp/petsc-7h9Q3B/config.types/conftest.cc Possible ERROR while running compiler: stderr: "/tmp/petsc-7h9Q3B/config.types/conftest.cc", line 6: warning: variable "x" was declared but never referenced std::complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Executing: mpicxx -o /tmp/petsc-7h9Q3B/config.types/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ============================================================================================= TESTING: checkConst from config.types(config/BuildSystem/config/types.py:103) Checks for working const, and if not found defines it to empty string ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" Defined "USING_64BIT_PTR" to "1" ============================================================================================= TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:193) ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" ===== Checking compiler Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC /tmp/petsc-7h9Q3B/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" ============================================================================================= TESTING: checkMaxPathLen from config.types(config/BuildSystem/config/types.py:215) Determining PETSC_MAX_PATH_LEN ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types /tmp/petsc-7h9Q3B/config.types/conftest.c Defined "MAX_PATH_LEN" to "4096" child config.types 5.023891 ============================================================================================= TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.001062 ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lfpe Linker output before filtering: /usr/bin/ld: cannot find -lfpe : Linker output after filtering: /usr/bin/ld: cannot find -lfpe: ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lsocket Linker output before filtering: /usr/bin/ld: cannot find -lsocket : Linker output after filtering: /usr/bin/ld: cannot find -lsocket: ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lfpe Linker output before filtering: /usr/bin/ld: cannot find -lfpe : Linker output after filtering: /usr/bin/ld: cannot find -lfpe: ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lsocket Linker output before filtering: /usr/bin/ld: cannot find -lsocket : Linker output after filtering: /usr/bin/ld: cannot find -lsocket: ============================================================================================= TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lstdc++ -ldl CheckMath: using math library [] ============================================================================================= TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lstdc++ -ldl erf() found Defined "HAVE_ERF" to "1" ============================================================================================= TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lstdc++ -ldl tgamma() found Defined "HAVE_TGAMMA" to "1" ============================================================================================= TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lstdc++ -ldl lgamma() found Defined "HAVE_LGAMMA" to "1" ============================================================================================= TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_FENV_H" to "1" ============================================================================================= TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lstdc++ -ldl log2() found Defined "HAVE_LOG2" to "1" ============================================================================================= TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lstdc++ -ldl realtime functions are linked in by default ============================================================================================= TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -ldl -lstdc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 7.872934 ============================================================================================= TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:38) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Linker output before filtering: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest': Linker output before filtering: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest': Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest' Checking for functions [ADIOI_BGL_Open] in library [''] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest' *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ============================================================================================= TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:99) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 1.302135 child config.atomics 0.000007 ============================================================================================= TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SYSINFO" to "1" Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file sys/systeminfo.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file sys/systeminfo.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file sys/systeminfo.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Possible ERROR while running compiler: exit code 2 stderr: PGC-F-0249-#error -- "Cannot check sysinfo without special headers" (/tmp/petsc-7h9Q3B/config.functions/conftest.c: 9) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_SYS_SYSINFO_H # include #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ============================================================================================= TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ============================================================================================= TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MEMMOVE" to "1" ============================================================================================= TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.types -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC /tmp/petsc-7h9Q3B/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Executing: mpicxx -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Defined "SIGNAL_CAST" to " " ============================================================================================= TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Possible ERROR while running compiler: exit code 2 stderr: PGC-S-0094-Illegal type conversion required (/tmp/petsc-7h9Q3B/config.functions/conftest.c: 6) PGC/power Linux 19.9-0: compilation completed with severe errors Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VA_COPY" to "1" ============================================================================================= TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _access snprintf realpath dlsym bzero _getcwd _pipe getwd uname _lseek sleep _sleep lseek usleep dlclose gethostname clock access _snprintf dlerror fork getpagesize sbreak memalign getcwd gethostbyname readlink _set_output_format PXFGETARG strcasecmp dlopen fpresetsticky drand48 socket popen getrusage _mkdir time fpsetsticky stricmp] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _access(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char _pipe(); char getwd(); char uname(); char _lseek(); char sleep(); char _sleep(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char access(); char _snprintf(); char dlerror(); char fork(); char getpagesize(); char sbreak(); char memalign(); char getcwd(); char gethostbyname(); char readlink(); char _set_output_format(); char PXFGETARG(); char strcasecmp(); char dlopen(); char fpresetsticky(); char drand48(); char socket(); char popen(); char getrusage(); char _mkdir(); char time(); char fpsetsticky(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:119: warning: the `getwd' function is dangerous and should not be used. /tmp/petsc-7h9Q3B/config.functions/conftest.c:77: undefined reference to `_access' /tmp/petsc-7h9Q3B/config.functions/conftest.c:107: undefined reference to `_getcwd' /tmp/petsc-7h9Q3B/config.functions/conftest.c:113: undefined reference to `_pipe' /tmp/petsc-7h9Q3B/config.functions/conftest.c:131: undefined reference to `_lseek' /tmp/petsc-7h9Q3B/config.functions/conftest.c:143: undefined reference to `_sleep' /tmp/petsc-7h9Q3B/config.functions/conftest.c:185: undefined reference to `_snprintf' /tmp/petsc-7h9Q3B/config.functions/conftest.c:209: undefined reference to `sbreak' /tmp/petsc-7h9Q3B/config.functions/conftest.c:239: undefined reference to `_set_output_format' /tmp/petsc-7h9Q3B/config.functions/conftest.c:245: undefined reference to `PXFGETARG' /tmp/petsc-7h9Q3B/config.functions/conftest.c:263: undefined reference to `fpresetsticky' /tmp/petsc-7h9Q3B/config.functions/conftest.c:293: undefined reference to `_mkdir' /tmp/petsc-7h9Q3B/config.functions/conftest.c:305: undefined reference to `fpsetsticky' /tmp/petsc-7h9Q3B/config.functions/conftest.c:311: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' Linker output before filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:119: warning: the `getwd' function is dangerous and should not be used. /tmp/petsc-7h9Q3B/config.functions/conftest.c:77: undefined reference to `_access' /tmp/petsc-7h9Q3B/config.functions/conftest.c:107: undefined reference to `_getcwd' /tmp/petsc-7h9Q3B/config.functions/conftest.c:113: undefined reference to `_pipe' /tmp/petsc-7h9Q3B/config.functions/conftest.c:131: undefined reference to `_lseek' /tmp/petsc-7h9Q3B/config.functions/conftest.c:143: undefined reference to `_sleep' /tmp/petsc-7h9Q3B/config.functions/conftest.c:185: undefined reference to `_snprintf' /tmp/petsc-7h9Q3B/config.functions/conftest.c:209: undefined reference to `sbreak' /tmp/petsc-7h9Q3B/config.functions/conftest.c:239: undefined reference to `_set_output_format' /tmp/petsc-7h9Q3B/config.functions/conftest.c:245: undefined reference to `PXFGETARG' /tmp/petsc-7h9Q3B/config.functions/conftest.c:263: undefined reference to `fpresetsticky' /tmp/petsc-7h9Q3B/config.functions/conftest.c:293: undefined reference to `_mkdir' /tmp/petsc-7h9Q3B/config.functions/conftest.c:305: undefined reference to `fpsetsticky' /tmp/petsc-7h9Q3B/config.functions/conftest.c:311: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:119: warning: the `getwd' function is dangerous and should not be used. /tmp/petsc-7h9Q3B/config.functions/conftest.c:77: undefined reference to `_access' /tmp/petsc-7h9Q3B/config.functions/conftest.c:107: undefined reference to `_getcwd' /tmp/petsc-7h9Q3B/config.functions/conftest.c:113: undefined reference to `_pipe' /tmp/petsc-7h9Q3B/config.functions/conftest.c:131: undefined reference to `_lseek' /tmp/petsc-7h9Q3B/config.functions/conftest.c:143: undefined reference to `_sleep' /tmp/petsc-7h9Q3B/config.functions/conftest.c:185: undefined reference to `_snprintf' /tmp/petsc-7h9Q3B/config.functions/conftest.c:209: undefined reference to `sbreak' /tmp/petsc-7h9Q3B/config.functions/conftest.c:239: undefined reference to `_set_output_format' /tmp/petsc-7h9Q3B/config.functions/conftest.c:245: undefined reference to `PXFGETARG' /tmp/petsc-7h9Q3B/config.functions/conftest.c:263: undefined reference to `fpresetsticky' /tmp/petsc-7h9Q3B/config.functions/conftest.c:293: undefined reference to `_mkdir' /tmp/petsc-7h9Q3B/config.functions/conftest.c:305: undefined reference to `fpsetsticky' /tmp/petsc-7h9Q3B/config.functions/conftest.c:311: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest': Checking for functions [rand getdomainname realpath dlsym bzero uname usleep dlclose gethostname clock dlerror] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char dlerror(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_DLERROR" to "1" Checking for functions [fork getpagesize memalign gethostbyname readlink strcasecmp dlopen drand48 socket popen getrusage time] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char memalign(); char gethostbyname(); char readlink(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char popen(); char getrusage(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_access] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_access' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' Linker output before filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_access' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_access' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest': Checking for functions [snprintf] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_getcwd' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' Linker output before filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_getcwd' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_getcwd' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest': Checking for functions [_pipe] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_pipe' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' Linker output before filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_pipe' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_pipe' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest': Checking for functions [getwd] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. Linker output before filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. : Linker output after filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used.: Checking for functions [_lseek] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_lseek' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' Linker output before filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_lseek' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_lseek' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest': Checking for functions [sleep] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_sleep] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_sleep' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' Linker output before filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_sleep' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_sleep' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest': Checking for functions [lseek] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_snprintf' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' Linker output before filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_snprintf' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_snprintf' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest': Checking for functions [sbreak] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `sbreak' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' Linker output before filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `sbreak' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `sbreak' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest': Checking for functions [getcwd] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_set_output_format' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' Linker output before filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_set_output_format' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_set_output_format' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest': Checking for functions [PXFGETARG] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `PXFGETARG' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' Linker output before filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `PXFGETARG' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `PXFGETARG' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest': Checking for functions [fpresetsticky] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpresetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `fpresetsticky' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' Linker output before filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `fpresetsticky' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `fpresetsticky' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest': Checking for functions [_mkdir] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_mkdir' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' Linker output before filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_mkdir' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `_mkdir' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest': Checking for functions [fpsetsticky] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpsetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `fpsetsticky' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' Linker output before filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `fpsetsticky' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `fpsetsticky' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest': Checking for functions [stricmp] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' Linker output before filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.functions/conftest.o: In function `main': /tmp/petsc-7h9Q3B/config.functions/conftest.c:24: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.functions/conftest': ============================================================================================= TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.functions/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.functions/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 21.011399 ============================================================================================= TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() child config.utilities.getResidentSetSize 0.001019 child config.utilities.fortranCommandLine 0.000006 ============================================================================================= TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file sigfpe.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file sigfpe.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file sigfpe.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file fpxcp.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file fpxcp.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file fpxcp.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file floatingpoint.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file floatingpoint.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file floatingpoint.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: child config.utilities.FPTrap 0.262557 ============================================================================================= TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.functions -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 2 stderr: PGC-F-0206-Can't find include file sysctl.h (/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros/conftest.c: 4) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(exit, &info));; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 0.614262 ============================================================================================= TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ============================================================================================= TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ============================================================================================= TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ============================================================================================= TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: mpicxx -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.missing -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: mpicxx -o /tmp/petsc-7h9Q3B/config.utilities.missing/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 /tmp/petsc-7h9Q3B/config.utilities.missing/conftest.o -lstdc++ -ldl child config.utilities.missing 4.525195 ============================================================================================= TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:34) ============================================================================================= TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:49) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Executing: uname -s stdout: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Executing: mpicc -v Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ============================================================================================= TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:94) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ============================================================================================= TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:100) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ============================================================================================= TESTING: checkSymbolResolution from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:109) Checks that dladdr() works ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(exit, &info)); ; return 0; } Defined "HAVE_DLADDR" to "1" Checking for header: cxxabi.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file cxxabi.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file cxxabi.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file cxxabi.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: child PETSc.options.sharedLibraries 0.317441 ============================================================================================= TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/PETSc.options.scalarTypes/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNORMAL" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/PETSc.options.scalarTypes/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNAN" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/PETSc.options.scalarTypes/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISINF" to "1" ============================================================================================= TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Possible ERROR while running compiler: exit code 2 stderr: PGC-F-0206-Can't find include file quadmath.h (/tmp/petsc-7h9Q3B/config.libraries/conftest.c: 4) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 2.123295 ============================================================================================= TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mkdir...not found Checking for program /sw/summit/xalt/1.2.1/bin/mkdir...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/mkdir...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/mkdir...not found Checking for program /sw/summit/forge/20.0.1/bin/mkdir...not found Checking for program /sw/summit/cuda/10.1.243/bin/mkdir...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/mkdir...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/mkdir...not found Checking for program /sw/sources/hpss/bin/mkdir...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/mkdir...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/mkdir...not found Checking for program /opt/ibm/csm/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ============================================================================================= TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /sw/sources/lsf-tools/2.0/summit/bin/autoreconf...not found Checking for program /sw/summit/xalt/1.2.1/bin/autoreconf...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/autoreconf...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/autoreconf...not found Checking for program /sw/summit/forge/20.0.1/bin/autoreconf...not found Checking for program /sw/summit/cuda/10.1.243/bin/autoreconf...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/autoreconf...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/autoreconf...not found Checking for program /sw/sources/hpss/bin/autoreconf...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/autoreconf...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/autoreconf...not found Checking for program /opt/ibm/csm/bin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...found Executing: ['/usr/bin/autoreconf'] autoreconf test successful! Checking for program /sw/sources/lsf-tools/2.0/summit/bin/libtoolize...not found Checking for program /sw/summit/xalt/1.2.1/bin/libtoolize...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/libtoolize...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/libtoolize...not found Checking for program /sw/summit/forge/20.0.1/bin/libtoolize...not found Checking for program /sw/summit/cuda/10.1.243/bin/libtoolize...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/libtoolize...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/libtoolize...not found Checking for program /sw/sources/hpss/bin/libtoolize...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/libtoolize...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/libtoolize...not found Checking for program /opt/ibm/csm/bin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /usr/bin/libtoolize...found ============================================================================================= TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /sw/sources/lsf-tools/2.0/summit/bin/bash...not found Checking for program /sw/summit/xalt/1.2.1/bin/bash...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/bash...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/bash...not found Checking for program /sw/summit/forge/20.0.1/bin/bash...not found Checking for program /sw/summit/cuda/10.1.243/bin/bash...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/bash...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/bash...not found Checking for program /sw/sources/hpss/bin/bash...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/bash...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/bash...not found Checking for program /opt/ibm/csm/bin/bash...not found Checking for program /usr/local/bin/bash...not found Checking for program /usr/bin/bash...found Defined make macro "SHELL" to "/usr/bin/bash" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/sed...not found Checking for program /sw/summit/xalt/1.2.1/bin/sed...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/sed...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/sed...not found Checking for program /sw/summit/forge/20.0.1/bin/sed...not found Checking for program /sw/summit/cuda/10.1.243/bin/sed...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/sed...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/sed...not found Checking for program /sw/sources/hpss/bin/sed...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/sed...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/sed...not found Checking for program /opt/ibm/csm/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-7h9Q3B/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mv...not found Checking for program /sw/summit/xalt/1.2.1/bin/mv...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/mv...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/mv...not found Checking for program /sw/summit/forge/20.0.1/bin/mv...not found Checking for program /sw/summit/cuda/10.1.243/bin/mv...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/mv...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/mv...not found Checking for program /sw/sources/hpss/bin/mv...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/mv...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/mv...not found Checking for program /opt/ibm/csm/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/cp...not found Checking for program /sw/summit/xalt/1.2.1/bin/cp...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/cp...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/cp...not found Checking for program /sw/summit/forge/20.0.1/bin/cp...not found Checking for program /sw/summit/cuda/10.1.243/bin/cp...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cp...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/cp...not found Checking for program /sw/sources/hpss/bin/cp...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/cp...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/cp...not found Checking for program /opt/ibm/csm/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/grep...not found Checking for program /sw/summit/xalt/1.2.1/bin/grep...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/grep...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/grep...not found Checking for program /sw/summit/forge/20.0.1/bin/grep...not found Checking for program /sw/summit/cuda/10.1.243/bin/grep...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/grep...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/grep...not found Checking for program /sw/sources/hpss/bin/grep...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/grep...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/grep...not found Checking for program /opt/ibm/csm/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/rm...not found Checking for program /sw/summit/xalt/1.2.1/bin/rm...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/rm...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/rm...not found Checking for program /sw/summit/forge/20.0.1/bin/rm...not found Checking for program /sw/summit/cuda/10.1.243/bin/rm...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/rm...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/rm...not found Checking for program /sw/sources/hpss/bin/rm...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/rm...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/rm...not found Checking for program /opt/ibm/csm/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/diff...not found Checking for program /sw/summit/xalt/1.2.1/bin/diff...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/diff...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/diff...not found Checking for program /sw/summit/forge/20.0.1/bin/diff...not found Checking for program /sw/summit/cuda/10.1.243/bin/diff...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/diff...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/diff...not found Checking for program /sw/sources/hpss/bin/diff...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/diff...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/diff...not found Checking for program /opt/ibm/csm/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-7h9Q3B/config.programs/diff1" "/tmp/petsc-7h9Q3B/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of the specific search path Warning accessing /usr/ucb gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Warning accessing /usr/usb gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Defined make macro "PYTHON" to "/usr/bin/python" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/m4...not found Checking for program /sw/summit/xalt/1.2.1/bin/m4...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/m4...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/m4...not found Checking for program /sw/summit/forge/20.0.1/bin/m4...not found Checking for program /sw/summit/cuda/10.1.243/bin/m4...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/m4...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/m4...not found Checking for program /sw/sources/hpss/bin/m4...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/m4...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/m4...not found Checking for program /opt/ibm/csm/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 1.917823 ============================================================================================= TESTING: consistencyChecks from config.packages.make(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.make(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default ============================================================================================= TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:96) Check Guesses for GNU make Executing: gmake --version stdout: GNU Make 3.82 Built for powerpc64le-redhat-linux-gnu Copyright (C) 2010 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Checking for program /sw/sources/lsf-tools/2.0/summit/bin/gmake...not found Checking for program /sw/summit/xalt/1.2.1/bin/gmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/gmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/gmake...not found Checking for program /sw/summit/forge/20.0.1/bin/gmake...not found Checking for program /sw/summit/cuda/10.1.243/bin/gmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/gmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/gmake...not found Checking for program /sw/sources/hpss/bin/gmake...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/gmake...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/gmake...not found Checking for program /opt/ibm/csm/bin/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...found Defined make macro "MAKE" to "/usr/bin/gmake" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/make...not found Checking for program /sw/summit/xalt/1.2.1/bin/make...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/make...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/make...not found Checking for program /sw/summit/forge/20.0.1/bin/make...not found Checking for program /sw/summit/cuda/10.1.243/bin/make...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/make...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/make...not found Checking for program /sw/sources/hpss/bin/make...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/make...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/make...not found Checking for program /opt/ibm/csm/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE_USER" to "make" ============================================================================================= ***** WARNING: You have a version of GNU make older than 4.0. It will work, but may not support all the parallel testing options. You can install the latest GNU make with your package manager, such as brew or macports, or use the --download-make option to get the latest GNU make ***** ============================================================================================= ============================================================================================= TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:150) Setup other GNU make stuff Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ============================================================================================= TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:197) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 128 cores: using make_np = 59 using user-provided make_np = 8 Defined make macro "MAKE_NP" to "8" Defined make macro "MAKE_TEST_NP" to "49" Defined make macro "MAKE_LOAD" to "166.4" Defined make macro "NPMAX" to "128" child config.packages.make 0.016961 ============================================================================================= TESTING: consistencyChecks from config.packages.X(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.X(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.X 0.001233 ============================================================================================= TESTING: consistencyChecks from config.packages.hwloc(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.hwloc 0.001445 ============================================================================================= TESTING: consistencyChecks from config.packages.valgrind(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search VALGRIND: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['valgrind/valgrind.h'] in Compiler specific search VALGRIND: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file valgrind/valgrind.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file valgrind/valgrind.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file valgrind/valgrind.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/include'] Found header files [] in ['/usr/local/include'] Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types -I/usr/local/include /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file valgrind/valgrind.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file valgrind/valgrind.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file valgrind/valgrind.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/include'] Found header files [] in ['/usr/local/include'] Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types -I/usr/local/include /tmp/petsc-7h9Q3B/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 0 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 10 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 16 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 21 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 25 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 29 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 40 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 70 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" extern void * __builtin_return_address ( int ) ; extern void * __builtin_frame_address ( int ) ; # 79 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" # 83 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" typedef struct __va_list_tag { void * args ; } * __pgi_va_list ; # 108 "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/include/_c_macros.h" void __builtin_pgi_va_start ( ) ; void * __builtin_pgi_va_arg ( ) ; # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/confdefs.h" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 2 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" # 1 "/tmp/petsc-7h9Q3B/config.headers/conffix.h" # 3 "/tmp/petsc-7h9Q3B/config.headers/conftest.c" stderr: PGC-F-0206-Can't find include file valgrind/valgrind.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: PGC-F-0206-Can't find include file valgrind/valgrind.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted : Preprocess output after filtering: PGC-F-0206-Can't find include file valgrind/valgrind.h (/tmp/petsc-7h9Q3B/config.headers/conftest.c: 3) PGC/power Linux 19.9-0: compilation aborted: VALGRIND: SearchDir DirPath not found.. skipping: /opt/local Executing: uname -s stdout: Linux Detected Linux OS ============================================================================================= It appears you do not have valgrind installed on your system. We HIGHLY recommend you install it from www.valgrind.org Or install valgrind-devel or equivalent using your package manager. Then rerun ./configure ============================================================================================= child config.packages.valgrind 0.280103 ============================================================================================= TESTING: consistencyChecks from config.packages.thrust(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.thrust 0.001628 ============================================================================================= TESTING: consistencyChecks from config.packages.cuda(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.cuda(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.cuda(config/BuildSystem/config/packages/cuda.py:138) Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/nvcc...not found Checking for program /sw/summit/forge/20.0.1/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/nvcc...found Defined make macro "SYSTEMNVCC" to "/sw/summit/cuda/10.1.243/bin/nvcc -ccbin=pgc++" ================================================================================== Checking for a functional cuda Checking for library in Compiler specific search CUDA: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Linker output before filtering: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_cublasInit': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `cublasInit' /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_cufftDestroy': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:7: undefined reference to `cufftDestroy' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_cublasInit': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `cublasInit' /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_cufftDestroy': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:7: undefined reference to `cufftDestroy' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest': Checking for functions [cublasInit cufftDestroy] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } int main() { _check_cublasInit(); _check_cufftDestroy();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_cublasInit': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `cublasInit' /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_cufftDestroy': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:7: undefined reference to `cufftDestroy' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest' Checking for library in Compiler specific search CUDA: ['libcudart.a', 'libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Linker output before filtering: /usr/bin/ld: cannot find -lcudart /usr/bin/ld: cannot find -lcufft /usr/bin/ld: cannot find -lcublas /usr/bin/ld: cannot find -lcusparse /usr/bin/ld: cannot find -lcusolver /usr/bin/ld: cannot find -lcurand : Linker output after filtering: /usr/bin/ld: cannot find -lcudart /usr/bin/ld: cannot find -lcufft /usr/bin/ld: cannot find -lcublas /usr/bin/ld: cannot find -lcusparse /usr/bin/ld: cannot find -lcusolver /usr/bin/ld: cannot find -lcurand: Checking for functions [cublasInit cufftDestroy] in library ['libcudart.a', 'libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } int main() { _check_cublasInit(); _check_cufftDestroy();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find -lcudart /usr/bin/ld: cannot find -lcufft /usr/bin/ld: cannot find -lcublas /usr/bin/ld: cannot find -lcusparse /usr/bin/ld: cannot find -lcusolver /usr/bin/ld: cannot find -lcurand Checking for library in Compiler specific search CUDA: ['cudart.lib', 'cufft.lib', 'cublas.lib', 'cusparse.lib', 'cusolver.lib', 'curand.lib'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Linker output before filtering: /usr/bin/ld: cannot find cudart.lib: No such file or directory /usr/bin/ld: cannot find cufft.lib: No such file or directory /usr/bin/ld: cannot find cublas.lib: No such file or directory /usr/bin/ld: cannot find cusparse.lib: No such file or directory /usr/bin/ld: cannot find cusolver.lib: No such file or directory /usr/bin/ld: cannot find curand.lib: No such file or directory : Linker output after filtering: /usr/bin/ld: cannot find cudart.lib: No such file or directory /usr/bin/ld: cannot find cufft.lib: No such file or directory /usr/bin/ld: cannot find cublas.lib: No such file or directory /usr/bin/ld: cannot find cusparse.lib: No such file or directory /usr/bin/ld: cannot find cusolver.lib: No such file or directory /usr/bin/ld: cannot find curand.lib: No such file or directory: Checking for functions [cublasInit cufftDestroy] in library ['cudart.lib', 'cufft.lib', 'cublas.lib', 'cusparse.lib', 'cusolver.lib', 'curand.lib'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } int main() { _check_cublasInit(); _check_cufftDestroy();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o cudart.lib cufft.lib cublas.lib cusparse.lib cusolver.lib curand.lib -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /usr/bin/ld: cannot find cudart.lib: No such file or directory /usr/bin/ld: cannot find cufft.lib: No such file or directory /usr/bin/ld: cannot find cublas.lib: No such file or directory /usr/bin/ld: cannot find cusparse.lib: No such file or directory /usr/bin/ld: cannot find cusolver.lib: No such file or directory /usr/bin/ld: cannot find curand.lib: No such file or directory CUDA: DirPath not found.. skipping: /sw/summit/cuda/10.1.243/lib Checking for library in Package specific search directory CUDA: ['/sw/summit/cuda/10.1.243/lib64/libcudart.a', 'libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a'] Contents of /sw/summit/cuda/10.1.243: ['rpm', 'LICENSE', 'README', 'bin', 'compat', 'doc', 'extras', 'include', 'lib64', 'libnsight', 'libnvvp', 'nsightee_plugins', 'nvml', 'nvvm', 'samples', 'share', 'targets', 'tools', 'version.txt', 'nsight-systems', 'nsight-compute'] Contents /sw/summit/cuda/10.1.243/lib64: ['libcudart.so.10.1', 'libcudart.so.10.1.243', 'libcudadevrt.a', 'libcudart.so', 'libcudart_static.a', 'libculibos.a', 'libcufft.so.10', 'libcufft.so.10.1.1.243', 'libcufftw.so.10', 'libcufftw.so.10.1.1.243', 'libcufft.so', 'libcufft_static.a', 'libcufft_static_nocallback.a', 'libcufftw.so', 'libcufftw_static.a', 'stubs', 'libcurand.so.10', 'libcurand.so.10.1.1.243', 'libcurand.so', 'libcurand_static.a', 'libcusolver.so.10', 'libcusolver.so.10.2.0.243', 'libcusolverMg.so.10', 'libcusolverMg.so.10.2.0.243', 'libcusolver.so', 'libcusolverMg.so', 'libcusolver_static.a', 'liblapack_static.a', 'libmetis_static.a', 'libcusparse.so.10', 'libcusparse.so.10.3.0.243', 'libcusparse.so', 'libcusparse_static.a', 'libnppc.so.10', 'libnppc.so.10.2.0.243', 'libnppial.so.10', 'libnppial.so.10.2.0.243', 'libnppicc.so.10', 'libnppicc.so.10.2.0.243', 'libnppicom.so.10', 'libnppicom.so.10.2.0.243', 'libnppidei.so.10', 'libnppidei.so.10.2.0.243', 'libnppif.so.10', 'libnppif.so.10.2.0.243', 'libnppig.so.10', 'libnppig.so.10.2.0.243', 'libnppim.so.10', 'libnppim.so.10.2.0.243', 'libnppist.so.10', 'libnppist.so.10.2.0.243', 'libnppisu.so.10', 'libnppisu.so.10.2.0.243', 'libnppitc.so.10', 'libnppitc.so.10.2.0.243', 'libnpps.so.10', 'libnpps.so.10.2.0.243', 'libnppc.so', 'libnppc_static.a', 'libnppial.so', 'libnppial_static.a', 'libnppicc.so', 'libnppicc_static.a', 'libnppicom.so', 'libnppicom_static.a', 'libnppidei.so', 'libnppidei_static.a', 'libnppif.so', 'libnppif_static.a', 'libnppig.so', 'libnppig_static.a', 'libnppim.so', 'libnppim_static.a', 'libnppist.so', 'libnppist_static.a', 'libnppisu.so', 'libnppisu_static.a', 'libnppitc.so', 'libnppitc_static.a', 'libnpps.so', 'libnpps_static.a', 'libnvgraph.so.10', 'libnvgraph.so.10.1.243', 'libnvgraph.so', 'libnvgraph_static.a', 'libnvjpeg.so.10', 'libnvjpeg.so.10.3.0.243', 'libnvjpeg.so', 'libnvjpeg_static.a', 'libaccinj64.so', 'libaccinj64.so.10.1', 'libaccinj64.so.10.1.243', 'libcuinj64.so', 'libcuinj64.so.10.1', 'libcuinj64.so.10.1.243', 'libnvrtc-builtins.so', 'libnvrtc-builtins.so.10.1', 'libnvrtc-builtins.so.10.1.243', 'libnvrtc.so.10.1', 'libnvrtc.so.10.1.243', 'libnvrtc.so', 'libnvToolsExt.so', 'libnvToolsExt.so.1', 'libnvToolsExt.so.1.0.0', 'libcublas.so', 'libcublas.so.10', 'libcublas.so.10.2.1.243', 'libcublasLt.so', 'libcublasLt.so.10', 'libcublasLt.so.10.2.1.243', 'libcublasLt_static.a', 'libcublas_static.a', 'libcudnn.so', 'libnvblas.so', 'libnvblas.so.10', 'libnvblas.so.10.2.1.243', 'libcudnn.so.8', 'libcudnn.so.8.0.5', 'libcudnn_adv_infer.so', 'libcudnn_adv_infer.so.8', 'libcudnn_adv_infer.so.8.0.5', 'libcudnn_adv_train.so', 'libcudnn_adv_train.so.8', 'libcudnn_adv_train.so.8.0.5', 'libcudnn_cnn_infer.so', 'libcudnn_cnn_infer.so.8', 'libcudnn_cnn_infer.so.8.0.5', 'libcudnn_cnn_train.so', 'libcudnn_cnn_train.so.8', 'libcudnn_cnn_train.so.8.0.5', 'libcudnn_ops_infer.so', 'libcudnn_ops_infer.so.8', 'libcudnn_ops_infer.so.8.0.5', 'libcudnn_ops_train.so', 'libcudnn_ops_train.so.8', 'libcudnn_ops_train.so.8.0.5', 'libcudnn_static.a', 'libnccl.so.2.8.3', 'libnccl.so.2', 'pkgconfig', 'libnccl.so', 'libnccl_static.a'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [cublasInit cufftDestroy] in library ['/sw/summit/cuda/10.1.243/lib64/libcudart.a', 'libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } int main() { _check_cublasInit(); _check_cufftDestroy();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -Wl,-rpath,/sw/summit/cuda/10.1.243/lib64 -L/sw/summit/cuda/10.1.243/lib64 -lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand -lstdc++ -ldl Defined "HAVE_LIBCUDART" to "1" Defined "HAVE_LIBCUFFT" to "1" Defined "HAVE_LIBCUBLAS" to "1" Defined "HAVE_LIBCUSPARSE" to "1" Defined "HAVE_LIBCUSOLVER" to "1" Defined "HAVE_LIBCURAND" to "1" Checking for functions [cusolverDnDpotri] in library ['/sw/summit/cuda/10.1.243/lib64/libcudart.a', 'libcufft.a', 'libcublas.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cusolverDnDpotri(); static void _check_cusolverDnDpotri() { cusolverDnDpotri(); } int main() { _check_cusolverDnDpotri();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -Wl,-rpath,/sw/summit/cuda/10.1.243/lib64 -L/sw/summit/cuda/10.1.243/lib64 -lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand -lstdc++ -ldl Defined "HAVE_CUSOLVERDNDPOTRI" to "1" Checking for optional headers [] in Package specific search directory CUDA: ['/sw/summit/cuda/10.1.243/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/sw/summit/cuda/10.1.243/include'] Found header files [] in ['/sw/summit/cuda/10.1.243/include'] Checking for headers ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'curand.h', 'thrust/version.h'] in Package specific search directory CUDA: ['/sw/summit/cuda/10.1.243/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'curand.h', 'thrust/version.h'] in ['/sw/summit/cuda/10.1.243/include'] Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types -I/sw/summit/cuda/10.1.243/include /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types -I/sw/summit/cuda/10.1.243/include /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types -I/sw/summit/cuda/10.1.243/include /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types -I/sw/summit/cuda/10.1.243/include /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types -I/sw/summit/cuda/10.1.243/include /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types -I/sw/summit/cuda/10.1.243/include /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'curand.h', 'thrust/version.h'] in ['/sw/summit/cuda/10.1.243/include'] Checking for size of type: teststruct ===== Checking compiler Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -std=c++11 -Wno-deprecated-gpu-targets -std=c++11 /tmp/petsc-7h9Q3B/config.types/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include typedef struct {double a; int b;} teststruct; char assert_sizeof[(sizeof(teststruct)==16)*2-1]; Checking for size of type: teststruct ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include typedef struct {double a; int b;} teststruct; char assert_sizeof[(sizeof(teststruct)==16)*2-1]; Checking if sizeof(void*) in CUDA is the same as with regular compiler Checking for size of type: void * ===== Checking compiler Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.types/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -std=c++11 -Wno-deprecated-gpu-targets -std=c++11 /tmp/petsc-7h9Q3B/config.types/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "CUDA_GENERATION" to "70" Defined "HAVE_CUDA" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "cuda.h" ;petscpkgver(CUDA_VERSION); Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.packages.cuda -I/tmp/petsc-7h9Q3B/config.types -I/sw/summit/cuda/10.1.243/include /tmp/petsc-7h9Q3B/config.packages.cuda/conftest.c For cuda need 7.5 <= 10.1 <= Executing: nvcc -ccbin=pgc++ -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -std=c++11 -gencode arch=compute_70,code=sm_70 --dryrun dummy.cu 2>&1 | grep D__CUDACC__ | head -1 | cut -f2 -d" " stdout: pgc++ Determined the compiler nvcc uses is pgc++ PETSc C compiler mpicc PETSc C++ compiler mpicxx No CUDA_CXXFLAGS available Defined make macro "CUDA_CXX" to "pgc++" ============================================================================================= TESTING: checkVersion from config.packages.cuda(config/BuildSystem/config/package.py:1031) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "cuda.h" ;petscpkgver(CUDA_VERSION); Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.cuda -I/sw/summit/cuda/10.1.243/include /tmp/petsc-7h9Q3B/config.packages.cuda/conftest.c For cuda need 7.5 <= 10.1 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.cuda(config/BuildSystem/config/package.py:960) By default we don't care about checking if the library is shared child config.packages.cuda 9.456572 ============================================================================================= TESTING: consistencyChecks from config.packages.OpenMPI(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.001468 ============================================================================================= TESTING: consistencyChecks from config.packages.MPICH(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.001387 ============================================================================================= TESTING: consistencyChecks from config.packages.MPI(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:704) ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lstdc++ -ldl Checking for optional headers [] in Compiler specific search MPI: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['mpi.h'] in Compiler specific search MPI: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.packages.cuda /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['mpi.h'] in [] Defined "HAVE_MPI_F90MODULE_VISIBILITY" to "1" ============================================================================================= TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:550) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: PGC-S-0074-Non-constant expression in initializer (/tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c: 4) PGC-W-0093-Type cast required for this conversion of constant (/tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c: 4) PGC/power Linux 19.9-0: compilation completed with severe errors Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: PGC-S-0074-Non-constant expression in initializer (/tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c: 4) PGC/power Linux 19.9-0: compilation completed with severe errors Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: PGC-S-0074-Non-constant expression in initializer (/tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c: 4) PGC/power Linux 19.9-0: compilation completed with severe errors Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: PGC-S-0074-Non-constant expression in initializer (/tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c: 4) PGC/power Linux 19.9-0: compilation completed with severe errors Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.packages.cuda -I/tmp/petsc-7h9Q3B/config.packages.MPI /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Defined "HAVE_OMPI_MAJOR_VERSION" to "10" Defined "HAVE_OMPI_MINOR_VERSION" to "03" Defined "HAVE_OMPI_RELEASE_VERSION" to "01" ============================================================================================= TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:332) Check for functions added to the interface in MPI-2 ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={MPI_INT,MPI_DOUBLE}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -lstdc++ -ldl ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -lstdc++ -ldl ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -lstdc++ -ldl ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_ONE_SIDED" to "1" ============================================================================================= TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:379) Check for functions added to the interface in MPI-3 ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Win_allocate(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_attach(win,baseptr,size)); if (MPI_Win_create_dynamic(MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_FEATURE_DYNAMIC_WINDOW" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MPIX_CUDA_AWARE_SUPPORT) && MPIX_CUDA_AWARE_SUPPORT #else #error This OpenMPI is not CUDA-aware #endif int main() { ; return 0; } Defined "HAVE_MPI_GPU_AWARE" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_RGET" to "1" ============================================================================================= TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:177) Checking for location of mpiexec Checking for program /sw/sources/lsf-tools/2.0/summit/bin/jsrun...not found Checking for program /sw/summit/xalt/1.2.1/bin/jsrun...found Defined make macro "MPIEXEC" to "jsrun -g1" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/jsrun...not found Checking for program /sw/summit/xalt/1.2.1/bin/jsrun...found Defined make macro "MPIEXECEXECUTABLE" to "/sw/summit/xalt/1.2.1/bin/jsrun -g1" Running Executable with threads to time it out at 120 Executing: jsrun -g1 -n 1 printenv Unable to run jsrun -g1 with option "-n 1 printenv" This could be ok, some MPI implementations such as SGI produce a non-zero status with non-MPI programs Error: It is only possible to use js commands within a job allocation unless CSM is running 05-29-2021 16:24:01:502 51286 main: Error initializing RM connection. Exiting. Defined make macro "MPIEXEC" to "jsrun -g1" Checking for program /usr/libexec/ApplicationFirewall/socketfilterfw...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/socketfilterfw...not found Unable to find programs ['socketfilterfw'] providing listing of the specific search path Warning accessing /usr/libexec/ApplicationFirewall gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Checking for program /sw/sources/lsf-tools/2.0/summit/bin/hostname...not found Checking for program /sw/summit/xalt/1.2.1/bin/hostname...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/hostname...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/hostname...not found Checking for program /sw/summit/forge/20.0.1/bin/hostname...not found Checking for program /sw/summit/cuda/10.1.243/bin/hostname...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/hostname...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/hostname...not found Checking for program /sw/sources/hpss/bin/hostname...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/hostname...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/hostname...not found Checking for program /opt/ibm/csm/bin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/bin/hostname...found Defined make macro "HOSTNAME" to "hostname" Running Executable with threads to time it out at 60 Executing: hostname stdout: login4 Return code from hostname: 0 Hostname works, running network checks Checking for program /sbin/ping...not found Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ping...not found Checking for program /sw/summit/xalt/1.2.1/bin/ping...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/ping...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/ping...not found Checking for program /sw/summit/forge/20.0.1/bin/ping...not found Checking for program /sw/summit/cuda/10.1.243/bin/ping...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/ping...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ping...not found Checking for program /sw/sources/hpss/bin/ping...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ping...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ping...not found Checking for program /opt/ibm/csm/bin/ping...not found Checking for program /usr/local/bin/ping...not found Checking for program /usr/bin/ping...found Defined make macro "PING" to "ping" Executing: uname -s stdout: Linux Running Executable with threads to time it out at 60 Executing: ping -c 2 login4 Exception: while running ping skipping ping check Checking for program /sw/sources/lsf-tools/2.0/summit/bin/host...not found Checking for program /sw/summit/xalt/1.2.1/bin/host...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/host...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/host...not found Checking for program /sw/summit/forge/20.0.1/bin/host...not found Checking for program /sw/summit/cuda/10.1.243/bin/host...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/host...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/host...not found Checking for program /sw/sources/hpss/bin/host...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/host...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/host...not found Checking for program /opt/ibm/csm/bin/host...not found Checking for program /usr/local/bin/host...not found Checking for program /usr/bin/host...found Defined make macro "HOST" to "host" Running Executable with threads to time it out at 60 Executing: host login4 stdout: Host login4 not found: 3(NXDOMAIN) Exception: while running host skipping host check Checking for program /usr/sbin/traceroute...not found Checking for program /sw/sources/lsf-tools/2.0/summit/bin/traceroute...not found Checking for program /sw/summit/xalt/1.2.1/bin/traceroute...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/traceroute...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/traceroute...not found Checking for program /sw/summit/forge/20.0.1/bin/traceroute...not found Checking for program /sw/summit/cuda/10.1.243/bin/traceroute...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/traceroute...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/traceroute...not found Checking for program /sw/sources/hpss/bin/traceroute...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/traceroute...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/traceroute...not found Checking for program /opt/ibm/csm/bin/traceroute...not found Checking for program /usr/local/bin/traceroute...not found Checking for program /usr/bin/traceroute...not found Checking for program /usr/local/sbin/traceroute...not found Checking for program /usr/sbin/traceroute...not found Checking for program /opt/ibm/flightlog/bin/traceroute...not found Checking for program /opt/ibutils/bin/traceroute...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/traceroute...not found Checking for program /opt/puppetlabs/bin/traceroute...not found Checking for program /usr/lpp/mmfs/bin/traceroute...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/traceroute...not found Unable to find programs ['traceroute'] providing listing of the specific search path Warning accessing /usr/sbin gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects ============================================================================================= ***** WARNING: mpiexec may not work on your system due to network issues. Perhaps you have VPN running whose network settings may not work with mpiexec or your network is misconfigured ============================================================================================= ============================================================================================= ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-7h9Q3B/config.packages.MPI/conftest to see if it can be run Executing: jsrun -g1 -n 1 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest Running Executable with threads to time it out at 120 Executing: jsrun -g1 -n 1 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest ERROR while running executable: Could not execute "['jsrun -g1 -n 1 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest']": Error: It is only possible to use js commands within a job allocation unless CSM is running 05-29-2021 16:24:02:798 51546 main: Error initializing RM connection. Exiting. ============================================================================================= TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:432) Checking for MPI Datatype handles ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_LONG_DOUBLE" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.MPI -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_INT64_T" to "1" ============================================================================================= TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:478) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest' Linker output before filtering: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest': SGI MPI test failure ============================================================================================= TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:488) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 -fPIC /tmp/petsc-7h9Q3B/config.libraries/conftest.cc Possible ERROR while running compiler: stderr: "/tmp/petsc-7h9Q3B/config.libraries/conftest.cc", line 5: warning: variable "ierr" was set but never used static void _check_MPI_Finalize() { int ierr; ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Executing: mpicxx -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -std=c++14 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:504) Make sure fortran include [mpif.h] and library symbols are found ============================================================================================= TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:526) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPIIO" to "1" ============================================================================================= TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:630) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS Executing: mpicc -show stdout: pgcc -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/include -lpthread -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/lib -lmpiprofilesupport -lmpi_ibm compilers: Checking arg pgcc compilers: Checking arg -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/include compilers: Found include option: -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/include Executing: nvcc -ccbin=pgc++ -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -std=c++11 -gencode arch=compute_70,code=sm_70 -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/include -Wno-deprecated-gpu-targets -std=c++11 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Xcompiler -lineinfo -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -g -std=c++11 -gencode arch=compute_70,code=sm_70 -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/include Added CUDA compiler flag -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/include compilers: Checking arg -lpthread compilers: Checking arg -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/lib compilers: Checking arg -lmpiprofilesupport compilers: Checking arg -lmpi_ibm Defined make macro "CUDA_CXXFLAGS" to " -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/include " ============================================================================================= TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:679) Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ============================================================================================= TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:1031) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" ;petscpkgver(MPI_VERSION); Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.packages.cuda -I/tmp/petsc-7h9Q3B/config.packages.MPI /tmp/petsc-7h9Q3B/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:960) By default we don't care about checking if the library is shared child config.packages.MPI 19.362012 ============================================================================================= TESTING: consistencyChecks from config.packages.zstd(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.zstd 0.001574 ============================================================================================= TESTING: consistencyChecks from config.packages.yaml(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.001368 ============================================================================================= TESTING: consistencyChecks from config.packages.sycl(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sycl(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.sycl 0.001230 ============================================================================================= TESTING: consistencyChecks from config.packages.ssl(config/BuildSystem/config/packages/ssl.py:31) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.001423 ============================================================================================= TESTING: consistencyChecks from config.packages.sprng(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.001361 Not a clone of PETSc or no Fortran compiler or fortran-bindings disabled, don't need Sowing child config.packages.sowing 0.000230 ============================================================================================= TESTING: consistencyChecks from config.packages.revolve(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.001364 ============================================================================================= TESTING: consistencyChecks from config.packages.radau5(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.001360 ============================================================================================= TESTING: consistencyChecks from config.packages.pami(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.001227 ============================================================================================= TESTING: consistencyChecks from config.packages.opengles(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.001210 ============================================================================================= TESTING: consistencyChecks from config.packages.opencl(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.001217 ============================================================================================= TESTING: consistencyChecks from config.packages.muparser(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.001360 ============================================================================================= TESTING: consistencyChecks from config.packages.mpe(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.001370 ============================================================================================= TESTING: consistencyChecks from config.packages.memkind(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.001220 ============================================================================================= TESTING: consistencyChecks from config.packages.libmesh(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:76) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.001656 ============================================================================================= TESTING: consistencyChecks from config.packages.moose(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.001266 ============================================================================================= TESTING: consistencyChecks from config.packages.libjpeg(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.001348 Checking for program /sw/sources/lsf-tools/2.0/summit/bin/lgrind...not found Checking for program /sw/summit/xalt/1.2.1/bin/lgrind...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/lgrind...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/lgrind...not found Checking for program /sw/summit/forge/20.0.1/bin/lgrind...not found Checking for program /sw/summit/cuda/10.1.243/bin/lgrind...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/lgrind...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/lgrind...not found Checking for program /sw/sources/hpss/bin/lgrind...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/lgrind...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/lgrind...not found Checking for program /opt/ibm/csm/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /usr/local/sbin/lgrind...not found Checking for program /usr/sbin/lgrind...not found Checking for program /opt/ibm/flightlog/bin/lgrind...not found Checking for program /opt/ibutils/bin/lgrind...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/lgrind...not found Checking for program /opt/puppetlabs/bin/lgrind...not found Checking for program /usr/lpp/mmfs/bin/lgrind...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/lgrind...not found child config.packages.lgrind 0.001256 ============================================================================================= TESTING: consistencyChecks from config.packages.hip(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hip(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.hip 0.001240 child config.packages.gmsh 0.000177 ============================================================================================= TESTING: consistencyChecks from config.packages.gmp(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.001360 ============================================================================================= TESTING: consistencyChecks from config.packages.mpfr(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.001386 ============================================================================================= TESTING: consistencyChecks from config.packages.giflib(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.001386 ============================================================================================= TESTING: consistencyChecks from config.packages.cub(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cub(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.cub 0.001340 ============================================================================================= TESTING: consistencyChecks from config.packages.ctetgen(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.ctetgen 0.001364 ============================================================================================= TESTING: consistencyChecks from config.packages.concurrencykit(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.001354 ============================================================================================= TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:30) Looking for default C2html executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/c2html...not found Checking for program /sw/summit/xalt/1.2.1/bin/c2html...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/c2html...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/c2html...not found Checking for program /sw/summit/forge/20.0.1/bin/c2html...not found Checking for program /sw/summit/cuda/10.1.243/bin/c2html...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/c2html...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/c2html...not found Checking for program /sw/sources/hpss/bin/c2html...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/c2html...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/c2html...not found Checking for program /opt/ibm/csm/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /usr/local/sbin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /opt/ibm/flightlog/bin/c2html...not found Checking for program /opt/ibutils/bin/c2html...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/c2html...not found Checking for program /opt/puppetlabs/bin/c2html...not found Checking for program /usr/lpp/mmfs/bin/c2html...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/c2html...not found child config.packages.c2html 0.001839 ============================================================================================= TESTING: consistencyChecks from config.packages.boost(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.001372 ============================================================================================= TESTING: consistencyChecks from config.packages.silo(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.001357 ============================================================================================= TESTING: consistencyChecks from config.packages.Random123(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.001340 ============================================================================================= TESTING: consistencyChecks from config.packages.PARTY(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.001344 ============================================================================================= TESTING: consistencyChecks from config.packages.NVSHMEM(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.NVSHMEM(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.NVSHMEM 0.001207 ============================================================================================= TESTING: consistencyChecks from config.packages.Matlab(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.001122 ============================================================================================= TESTING: consistencyChecks from config.packages.MatlabEngine(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.001210 ============================================================================================= TESTING: consistencyChecks from config.packages.Mathematica(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.001214 ============================================================================================= TESTING: consistencyChecks from config.packages.regex(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lstdc++ -ldl Checking for optional headers [] in Compiler specific search REGEX: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['regex.h'] in Compiler specific search REGEX: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.cuda -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.packages.MPI /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['regex.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:1031) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:960) By default we don't care about checking if the library is shared child config.packages.regex 0.773120 ============================================================================================= TESTING: consistencyChecks from config.packages.libceed(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.001569 Defined "PYTHON_EXE" to ""/usr/bin/python"" Executing: /usr/bin/python -c "import Cython" Executing: /usr/bin/python -c "import numpy" child config.packages.python 0.032212 ============================================================================================= TESTING: consistencyChecks from config.packages.petsc4py(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:131) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] Defined make rule "petsc4pytest" with dependencies "" and code [] child config.packages.petsc4py 0.001936 ============================================================================================= TESTING: consistencyChecks from config.packages.mpi4py(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:79) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] child config.packages.mpi4py 0.001757 ============================================================================================= TESTING: consistencyChecks from config.packages.slepc(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.slepc(config/BuildSystem/config/packages/slepc.py:97) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc 0.001656 ============================================================================================= TESTING: consistencyChecks from config.packages.opengl(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.001230 ============================================================================================= TESTING: consistencyChecks from config.packages.glut(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.001203 ============================================================================================= TESTING: consistencyChecks from config.packages.GLVis(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.GLVis(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.GLVis 0.001340 ============================================================================================= TESTING: consistencyChecks from config.packages.CoDiPack(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.001336 ============================================================================================= TESTING: consistencyChecks from config.packages.adblaslapack(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.001360 child config.packages.cxxlibs 0.000014 ============================================================================================= TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:51) Looking for default CMake executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/cmake...not found Checking for program /sw/summit/xalt/1.2.1/bin/cmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/cmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/cmake...not found Checking for program /sw/summit/forge/20.0.1/bin/cmake...not found Checking for program /sw/summit/cuda/10.1.243/bin/cmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake...found Defined make macro "CMAKE" to "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake" Looking for default CTest executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ctest...not found Checking for program /sw/summit/xalt/1.2.1/bin/ctest...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/spectrum-mpi-10.3.1.2-20200121-zy6l7p3w4q2ns7i2zutzng7ex3drw656/bin/ctest...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.9-6rlh73dtf3lmbm6v7r3fkh7tnbeq53hc/linuxpower/19.9/bin/ctest...not found Checking for program /sw/summit/forge/20.0.1/bin/ctest...not found Checking for program /sw/summit/cuda/10.1.243/bin/ctest...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/ctest...found Defined make macro "CTEST" to "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/ctest" Executing: /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.20.2-24ualfzy6em6ws5sbiu7rlgcuionodrm/bin/cmake --version stdout: cmake version 3.20.2 CMake suite maintained and supported by Kitware (kitware.com/cmake). cmake version found 3.20.2 child config.packages.cmake 0.015379 ============================================================================================= TESTING: consistencyChecks from config.packages.unittestcpp(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp 0.001629 ============================================================================================= TESTING: consistencyChecks from config.packages.googletest(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.001380 ============================================================================================= TESTING: consistencyChecks from config.packages.eigen(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.eigen 0.001361 ============================================================================================= TESTING: consistencyChecks from config.packages.szlib(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.szlib(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.szlib 0.001347 ============================================================================================= TESTING: consistencyChecks from config.packages.zlib(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.zlib(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.zlib(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional zlib Looking for ZLIB at git.zlib, hg.zlib or a directory starting with ['zlib'] Found a copy of ZLIB in zlib-1.2.11 Makefile /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-pgi-kokkos-notpl-cuda10/lib/petsc/conf/pkg.conf.zlib has correct checksum Do not need to rebuild ZLIB Checking for library in Download ZLIB: ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/lib/libz.a'] Contents of /gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda: ['include', 'bin', 'etc', 'lib', 'share'] Contents /gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/lib: ['libsc-2.0.so', 'libtriangle.a', 'libp4est.a', 'libz.a', 'libp4est-2.0.7-1727.so', 'libz.so.1', 'libsc.la', 'libsc.so', 'libsc.a', 'libp4est.so', 'libz.so', 'libp4est.la', 'pkgconfig', 'libz.so.1.2.11'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [compress uncompress] in library ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/lib/libz.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char compress(); static void _check_compress() { compress(); } char uncompress(); static void _check_uncompress() { uncompress(); } int main() { _check_compress(); _check_uncompress();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -Wl,-rpath,/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/lib -L/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/lib -lz -lstdc++ -ldl Defined "HAVE_LIBZ" to "1" Checking for optional headers [] in Download ZLIB: ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] Found header files [] in ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] Checking for headers ['zlib.h'] in Download ZLIB: ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['zlib.h'] in ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] Checking include with compiler flags var CPPFLAGS ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.cuda -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['zlib.h'] in ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] ============================================================================================= TESTING: checkVersion from config.packages.zlib(config/BuildSystem/config/package.py:1031) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "zlib.h" ;petscpkgver(ZLIB_VERSION); Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.cuda -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.zlib -I/tmp/petsc-7h9Q3B/config.headers -I/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include /tmp/petsc-7h9Q3B/config.packages.zlib/conftest.c For zlib need <= 1.2.11 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.zlib(config/BuildSystem/config/package.py:960) By default we don't care about checking if the library is shared child config.packages.zlib 0.926483 child config.packages.mathlib 0.000017 ============================================================================================= TESTING: consistencyChecks from config.packages.tetgen(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.tetgen 0.001566 ============================================================================================= TESTING: consistencyChecks from config.packages.tchem(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.tchem 0.001357 ============================================================================================= TESTING: consistencyChecks from config.packages.saws(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.saws 0.001354 ============================================================================================= TESTING: consistencyChecks from config.packages.libpng(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.libpng 0.001364 ============================================================================================= TESTING: consistencyChecks from config.packages.combblas(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.combblas(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.combblas 0.001369 ============================================================================================= TESTING: consistencyChecks from config.packages.Triangle(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.Triangle(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.Triangle(config/BuildSystem/config/packages/Triangle.py:127) ================================================================================== Checking for a functional Triangle Looking for TRIANGLE at git.triangle, hg.triangle or a directory starting with ['petsc-pkg-triangle', 'Triangle'] Found a copy of TRIANGLE in git.triangle Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v1.3-p2^{commit}'] Executing: ['git', 'rev-parse', 'v1.3-p2'] stdout: 83097fb451da7944460445a6f55008c3de0fae8b Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing make.inc Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '83097fb451da7944460445a6f55008c3de0fae8b'] Executing: uname -s stdout: Linux Makefile /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-pgi-kokkos-notpl-cuda10/lib/petsc/conf/pkg.conf.triangle has correct checksum Commit file /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-pgi-kokkos-notpl-cuda10/lib/petsc/conf/pkg.gitcommit.triangle has correct checksum Do not need to rebuild TRIANGLE Checking for library in Download TRIANGLE: ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/lib/libtriangle.a'] Contents of /gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda: ['include', 'bin', 'etc', 'lib', 'share'] Contents /gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/lib: ['libsc-2.0.so', 'libtriangle.a', 'libp4est.a', 'libz.a', 'libp4est-2.0.7-1727.so', 'libz.so.1', 'libsc.la', 'libsc.so', 'libsc.a', 'libp4est.so', 'libz.so', 'libp4est.la', 'pkgconfig', 'libz.so.1.2.11'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [triangulate] in library ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/lib/libtriangle.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char triangulate(); static void _check_triangulate() { triangulate(); } int main() { _check_triangulate();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -Wl,-rpath,/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/lib -L/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/lib -ltriangle -lstdc++ -ldl Defined "HAVE_LIBTRIANGLE" to "1" Checking for optional headers [] in Download TRIANGLE: ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] Found header files [] in ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] Checking for headers ['triangle.h'] in Download TRIANGLE: ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['triangle.h'] in ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] Checking include with compiler flags var CPPFLAGS ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.cuda -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.zlib -I/tmp/petsc-7h9Q3B/config.headers -I/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['triangle.h'] in ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] ============================================================================================= TESTING: checkVersion from config.packages.Triangle(config/BuildSystem/config/package.py:1031) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:960) By default we don't care about checking if the library is shared child config.packages.Triangle 0.851257 ============================================================================================= TESTING: consistencyChecks from config.packages.metis(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.metis(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.metis 0.001925 ============================================================================================= TESTING: consistencyChecks from config.packages.pragmatic(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.pragmatic 0.001650 ============================================================================================= TESTING: consistencyChecks from config.packages.parmetis(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.parmetis 0.001629 ============================================================================================= TESTING: consistencyChecks from config.packages.Chaco(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.Chaco 0.001625 Executing: uname -s stdout: Linux ============================================================================================= TESTING: consistencyChecks from config.packages.hdf5(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.hdf5 0.007154 ============================================================================================= TESTING: consistencyChecks from config.packages.med(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.med(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.med 0.001364 ============================================================================================= TESTING: consistencyChecks from config.packages.cgns(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.cgns 0.001217 ============================================================================================= TESTING: consistencyChecks from config.packages.ascem-io(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.ascem-io 0.001346 ============================================================================================= TESTING: consistencyChecks from config.packages.pflotran(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.pflotran 0.001350 ============================================================================================= TESTING: consistencyChecks from config.packages.alquimia(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.alquimia 0.001360 ============================================================================================= TESTING: consistencyChecks from config.packages.SAMRAI(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SAMRAI(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.SAMRAI 0.001348 child config.packages.flibs 0.000014 ============================================================================================= TESTING: consistencyChecks from config.packages.pnetcdf(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.pnetcdf 0.001348 ============================================================================================= TESTING: consistencyChecks from config.packages.netcdf(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.netcdf 0.001341 ============================================================================================= TESTING: consistencyChecks from config.packages.exodusii(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.exodusii 0.001340 ============================================================================================= TESTING: consistencyChecks from config.packages.fblaslapack(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.fblaslapack(config/BuildSystem/config/packages/fblaslapack.py:27) The Apple Accelerate library uses threads that valgrind cannot handle child config.packages.fblaslapack 0.001248 ============================================================================================= TESTING: consistencyChecks from config.packages.pthread(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.pthread(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:20) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -lstdc++ -ldl Checking for optional headers [] in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['pthread.h'] in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.cuda -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.zlib -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['pthread.h'] in [] ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.pthread/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.pthread -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.pthread/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Defined "HAVE_PTHREAD_BARRIER_T" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.pthread/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.libraries -I/tmp/petsc-7h9Q3B/config.packages.pthread -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.pthread/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Defined "HAVE_SCHED_CPU_SET_T" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.cuda -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.zlib -I/tmp/petsc-7h9Q3B/config.packages.pthread -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.packages.pthread/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSCTL_H" to "1" ============================================================================================= TESTING: checkVersion from config.packages.pthread(config/BuildSystem/config/package.py:1031) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:960) By default we don't care about checking if the library is shared child config.packages.pthread 1.116436 ============================================================================================= TESTING: consistencyChecks from config.packages.egads(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.egads(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.egads 0.001590 ============================================================================================= TESTING: consistencyChecks from config.packages.PTScotch(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.PTScotch 0.001353 ============================================================================================= TESTING: consistencyChecks from config.packages.mmg(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mmg(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.mmg 0.001362 ============================================================================================= TESTING: consistencyChecks from config.packages.parmmg(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.parmmg(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.parmmg 0.001364 ============================================================================================= TESTING: consistencyChecks from config.packages.Zoltan(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Zoltan(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.Zoltan 0.001346 ============================================================================================= TESTING: consistencyChecks from config.packages.ADIOS(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADIOS(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS 0.001349 ============================================================================================= TESTING: consistencyChecks from config.packages.openmp(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openmp(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.openmp 0.001202 ============================================================================================= TESTING: consistencyChecks from config.packages.viennacl(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.viennacl 0.001336 ============================================================================================= TESTING: consistencyChecks from config.packages.ColPack(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ColPack(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.ColPack 0.001349 ============================================================================================= TESTING: consistencyChecks from config.packages.ADOLC(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.001358 ============================================================================================= TESTING: consistencyChecks from config.packages.openblas(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openblas(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.openblas 0.001352 ============================================================================================= TESTING: consistencyChecks from config.packages.blis(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.blis(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.blis 0.001344 ============================================================================================= TESTING: consistencyChecks from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.f2cblaslapack 0.001254 ============================================================================================= TESTING: consistencyChecks from config.packages.BlasLapack(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.BlasLapack(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:455) ================================================================================ Checking for BLAS and LAPACK in User specified BLAS/LAPACK library ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:110) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling unchanged on BLAS/LAPACK Linker output before filtering: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_ddot': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `ddot' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_ddot': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `ddot' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest': Checking for functions [ddot] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64', '-lblas', '-llapack'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.pthread -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64 -lblas -llapack -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_ddot': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `ddot' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest' Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64', '-lblas', '-llapack'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.pthread -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64 -lblas -llapack -lstdc++ -ldl Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBLAPACK" to "1" Checking for functions [dgetrs_] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64', '-lblas', '-llapack'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.pthread -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } int main() { _check_dgetrs_();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64 -lblas -llapack -lstdc++ -ldl Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBLAPACK" to "1" Checking for functions [dgeev_] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64', '-lblas', '-llapack'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.pthread -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } int main() { _check_dgeev_();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64 -lblas -llapack -lstdc++ -ldl Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBLAPACK" to "1" Found underscore name mangling on BLAS/LAPACK Defined "BLASLAPACK_UNDERSCORE" to "1" ============================================================================================= TESTING: checkMKL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:552) Check for Intel MKL library Linker output before filtering: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_mkl_set_num_threads': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `mkl_set_num_threads' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_mkl_set_num_threads': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `mkl_set_num_threads' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest': Checking for functions [mkl_set_num_threads] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64', '-lblas', '-llapack'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.pthread -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64 -lblas -llapack -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_mkl_set_num_threads': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `mkl_set_num_threads' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest' ============================================================================================= TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:597) Check for the IBM ESSL library Linker output before filtering: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_iessl': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `iessl' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_iessl': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `iessl' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest': Checking for functions [iessl] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64', '-lblas', '-llapack'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.pthread -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64 -lblas -llapack -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_iessl': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `iessl' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest' ============================================================================================= TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:605) Check for the IBM PESSL library - and error out - if used instead of ESSL Linker output before filtering: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_ipessl': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `ipessl' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest' : Linker output after filtering: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_ipessl': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `ipessl' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest': Checking for functions [ipessl] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64', '-lblas', '-llapack'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.pthread -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64 -lblas -llapack -lstdc++ -ldl Possible ERROR while running linker: exit code 2 stderr: /tmp/petsc-7h9Q3B/config.libraries/conftest.o: In function `_check_ipessl': /tmp/petsc-7h9Q3B/config.libraries/conftest.c:5: undefined reference to `ipessl' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-7h9Q3B/config.libraries/conftest' ============================================================================================= TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:630) Check for missing LAPACK routines Checking for functions [dgelss_ dgerfs_ dgges_ dhgeqz_ dhseqr_ dorgqr_ dormqr_ dstebz_ dstegr_ dstein_ dsteqr_ dsytri_ dtgsen_ dtrsen_ dtrtrs_ dgeqp3_] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64', '-lblas', '-llapack'] ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64', '-lblas', '-llapack'] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.pthread -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgelss_(); static void _check_dgelss_() { dgelss_(); } char dgerfs_(); static void _check_dgerfs_() { dgerfs_(); } char dgges_(); static void _check_dgges_() { dgges_(); } char dhgeqz_(); static void _check_dhgeqz_() { dhgeqz_(); } char dhseqr_(); static void _check_dhseqr_() { dhseqr_(); } char dorgqr_(); static void _check_dorgqr_() { dorgqr_(); } char dormqr_(); static void _check_dormqr_() { dormqr_(); } char dstebz_(); static void _check_dstebz_() { dstebz_(); } char dstegr_(); static void _check_dstegr_() { dstegr_(); } char dstein_(); static void _check_dstein_() { dstein_(); } char dsteqr_(); static void _check_dsteqr_() { dsteqr_(); } char dsytri_(); static void _check_dsytri_() { dsytri_(); } char dtgsen_(); static void _check_dtgsen_() { dtgsen_(); } char dtrsen_(); static void _check_dtrsen_() { dtrsen_(); } char dtrtrs_(); static void _check_dtrtrs_() { dtrtrs_(); } char dgeqp3_(); static void _check_dgeqp3_() { dgeqp3_(); } int main() { _check_dgelss_(); _check_dgerfs_(); _check_dgges_(); _check_dhgeqz_(); _check_dhseqr_(); _check_dorgqr_(); _check_dormqr_(); _check_dstebz_(); _check_dstegr_(); _check_dstein_(); _check_dsteqr_(); _check_dsytri_(); _check_dtgsen_(); _check_dtrsen_(); _check_dtrtrs_(); _check_dgeqp3_();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64 -lblas -llapack -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64 -lblas -llapack -lstdc++ -ldl Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBLAPACK" to "1" ============================================================================================= TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:646) Do the BLAS/LAPACK libraries have a valid lsame() function with correct binding. Checking for functions [lsame_] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64', '-lblas', '-llapack'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.pthread -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } int main() { _check_lsame_();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64 -lblas -llapack -lstdc++ -ldl Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBLAPACK" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.pthread -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.pthread -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }Executing: mpicc -o /tmp/petsc-7h9Q3B/config.setCompilers/libconftest.so -shared -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.setCompilers/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64 -lblas -llapack -lblas -llapack -lstdc++ -ldl ============================================================================================= TESTING: checkRuntimeIssues from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:705) Determines if BLAS/LAPACK routines use 32 or 64 bit integers ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.packages.BlasLapack/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.pthread -I/tmp/petsc-7h9Q3B/config.packages.BlasLapack -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { FILE *output = fopen("runtimetestoutput","w"); extern double ddot_(const int*,const double*,const int *,const double*,const int*); double x1mkl[4] = {3.0,5.0,7.0,9.0}; int one1mkl = 1,nmkl = 2; double dotresultmkl = 0; dotresultmkl = ddot_(&nmkl,x1mkl,&one1mkl,x1mkl,&one1mkl); fprintf(output, "-known-64-bit-blas-indices=%d",dotresultmkl != 34);; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.packages.BlasLapack/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.packages.BlasLapack/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64 -lblas -llapack -lstdc++ -ldl Testing executable /tmp/petsc-7h9Q3B/config.packages.BlasLapack/conftest to see if it can be run Executing: /tmp/petsc-7h9Q3B/config.packages.BlasLapack/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-7h9Q3B/config.packages.BlasLapack/conftest Checking for 64 bit blas indices: result 0 ============================================================================================= TESTING: checkCHeaders from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:530) Check for cblas.h and lapacke.h ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['cblas.h', 'lapacke.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.cuda -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.zlib -I/tmp/petsc-7h9Q3B/config.packages.pthread -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.cuda -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.zlib -I/tmp/petsc-7h9Q3B/config.packages.pthread -I/tmp/petsc-7h9Q3B/config.headers /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['cblas.h', 'lapacke.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.BlasLapack(config/BuildSystem/config/package.py:1031) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.BlasLapack(config/BuildSystem/config/package.py:960) By default we don't care about checking if the library is shared child config.packages.BlasLapack 8.155559 ============================================================================================= TESTING: consistencyChecks from config.packages.sundials2(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sundials2(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.sundials2 0.001565 ============================================================================================= TESTING: consistencyChecks from config.packages.spai(config/BuildSystem/config/packages/spai.py:53) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.spai(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.spai 0.001567 ============================================================================================= TESTING: consistencyChecks from config.packages.pARMS(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pARMS(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.pARMS 0.001357 ============================================================================================= TESTING: consistencyChecks from config.packages.p4est(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.p4est(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional p4est Looking for P4EST at git.p4est, hg.p4est or a directory starting with ['p4est'] Found a copy of P4EST in git.p4est Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', '1727693b446ee0c987be701320db0cd5de617cfc^{commit}'] Executing: ['git', 'rev-parse', '1727693b446ee0c987be701320db0cd5de617cfc'] stdout: 1727693b446ee0c987be701320db0cd5de617cfc Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing Doxyfile Removing Makefile Removing Makefile.in Removing Makefile.p4est.mk Removing Makefile.p4est.pre Removing aclocal.m4 Removing autom4te.cache/ Removing build-aux/ar-lib Removing build-aux/compile Removing build-aux/config.guess Removing build-aux/config.sub Removing build-aux/depcomp Removing build-aux/install-sh Removing build-aux/ltmain.sh Removing build-aux/missing Removing build-aux/test-driver Removing config.log Removing config.status Removing config/libtool.m4 Removing config/ltoptions.m4 Removing config/ltsugar.m4 Removing config/ltversion.m4 Removing config/lt~obsolete.m4 Removing configure Removing example/balance_seeds/.deps/ Removing example/balance_seeds/.dirstamp Removing example/balance_seeds/.libs/ Removing example/balance_seeds/balance_seeds2.o Removing example/balance_seeds/balance_seeds3.o Removing example/balance_seeds/p4est_balance_seeds Removing example/balance_seeds/p8est_balance_seeds Removing example/mesh/.deps/ Removing example/mesh/.dirstamp Removing example/mesh/.libs/ Removing example/mesh/mesh2.o Removing example/mesh/mesh3.o Removing example/mesh/p4est_mesh Removing example/mesh/p8est_mesh Removing example/mesh/p8est_periodicity Removing example/mesh/periodicity3.o Removing example/points/.deps/ Removing example/points/.dirstamp Removing example/points/.libs/ Removing example/points/p4est_points Removing example/points/p8est_points Removing example/points/points2.o Removing example/points/points3.o Removing example/simple/.deps/ Removing example/simple/.dirstamp Removing example/simple/.libs/ Removing example/simple/p4est_simple Removing example/simple/p8est_simple Removing example/simple/simple2.o Removing example/simple/simple3.o Removing example/steps/.deps/ Removing example/steps/.dirstamp Removing example/steps/.libs/ Removing example/steps/p4est_step1 Removing example/steps/p4est_step1.o Removing example/steps/p4est_step2 Removing example/steps/p4est_step2.o Removing example/steps/p4est_step3 Removing example/steps/p4est_step3.o Removing example/steps/p4est_step4 Removing example/steps/p4est_step4.o Removing example/steps/p8est_step1 Removing example/steps/p8est_step1.o Removing example/steps/p8est_step2 Removing example/steps/p8est_step2.o Removing example/steps/p8est_step3 Removing example/steps/p8est_step3.o Removing example/steps/p8est_step4 Removing example/steps/p8est_step4.o Removing example/tetgen/.deps/ Removing example/tetgen/.dirstamp Removing example/tetgen/.libs/ Removing example/tetgen/p4est_read_conn Removing example/tetgen/p4est_write_conn Removing example/tetgen/p8est_read_conn Removing example/tetgen/p8est_read_tetgen Removing example/tetgen/p8est_write_conn Removing example/tetgen/read_conn2.o Removing example/tetgen/read_conn3.o Removing example/tetgen/read_tetgen.o Removing example/tetgen/write_conn2.o Removing example/tetgen/write_conn3.o Removing example/timings/.deps/ Removing example/timings/.dirstamp Removing example/timings/.libs/ Removing example/timings/bricks2.o Removing example/timings/bricks3.o Removing example/timings/loadconn2.o Removing example/timings/loadconn3.o Removing example/timings/p4est_bricks Removing example/timings/p4est_loadconn Removing example/timings/p4est_timings Removing example/timings/p8est_bricks Removing example/timings/p8est_loadconn Removing example/timings/p8est_timings Removing example/timings/p8est_tsearch Removing example/timings/timings2.o Removing example/timings/timings3.o Removing example/timings/tsearch3.o Removing libtool Removing p4est.petscconf Removing pkg.gitcommit Removing src/.deps/ Removing src/.dirstamp Removing src/.libs/ Removing src/libp4est.la Removing src/p4est_config.h Removing src/pre_config.h Removing src/pre_config.h.in Removing src/src_libp4est_la-p4est.lo Removing src/src_libp4est_la-p4est.o Removing src/src_libp4est_la-p4est_algorithms.lo Removing src/src_libp4est_la-p4est_algorithms.o Removing src/src_libp4est_la-p4est_balance.lo Removing src/src_libp4est_la-p4est_balance.o Removing src/src_libp4est_la-p4est_base.lo Removing src/src_libp4est_la-p4est_base.o Removing src/src_libp4est_la-p4est_bits.lo Removing src/src_libp4est_la-p4est_bits.o Removing src/src_libp4est_la-p4est_communication.lo Removing src/src_libp4est_la-p4est_communication.o Removing src/src_libp4est_la-p4est_connectivity.lo Removing src/src_libp4est_la-p4est_connectivity.o Removing src/src_libp4est_la-p4est_connrefine.lo Removing src/src_libp4est_la-p4est_connrefine.o Removing src/src_libp4est_la-p4est_geometry.lo Removing src/src_libp4est_la-p4est_geometry.o Removing src/src_libp4est_la-p4est_ghost.lo Removing src/src_libp4est_la-p4est_ghost.o Removing src/src_libp4est_la-p4est_io.lo Removing 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src/src_libp4est_la-p6est_ghost.lo Removing src/src_libp4est_la-p6est_ghost.o Removing src/src_libp4est_la-p6est_lnodes.lo Removing src/src_libp4est_la-p6est_lnodes.o Removing src/src_libp4est_la-p6est_profile.lo Removing src/src_libp4est_la-p6est_profile.o Removing src/src_libp4est_la-p6est_vtk.lo Removing src/src_libp4est_la-p6est_vtk.o Removing src/src_libp4est_la-p8est.lo Removing src/src_libp4est_la-p8est.o Removing src/src_libp4est_la-p8est_algorithms.lo Removing src/src_libp4est_la-p8est_algorithms.o Removing src/src_libp4est_la-p8est_balance.lo Removing src/src_libp4est_la-p8est_balance.o Removing src/src_libp4est_la-p8est_bits.lo Removing src/src_libp4est_la-p8est_bits.o Removing src/src_libp4est_la-p8est_communication.lo Removing src/src_libp4est_la-p8est_communication.o Removing src/src_libp4est_la-p8est_connectivity.lo Removing src/src_libp4est_la-p8est_connectivity.o Removing src/src_libp4est_la-p8est_connrefine.lo Removing src/src_libp4est_la-p8est_connrefine.o Removing src/src_libp4est_la-p8est_geometry.lo Removing src/src_libp4est_la-p8est_geometry.o Removing src/src_libp4est_la-p8est_ghost.lo Removing src/src_libp4est_la-p8est_ghost.o Removing src/src_libp4est_la-p8est_io.lo Removing src/src_libp4est_la-p8est_io.o Removing src/src_libp4est_la-p8est_iterate.lo Removing src/src_libp4est_la-p8est_iterate.o Removing src/src_libp4est_la-p8est_lnodes.lo Removing src/src_libp4est_la-p8est_lnodes.o Removing src/src_libp4est_la-p8est_mesh.lo Removing src/src_libp4est_la-p8est_mesh.o Removing src/src_libp4est_la-p8est_nodes.lo Removing src/src_libp4est_la-p8est_nodes.o Removing src/src_libp4est_la-p8est_plex.lo Removing src/src_libp4est_la-p8est_plex.o Removing src/src_libp4est_la-p8est_points.lo Removing src/src_libp4est_la-p8est_points.o Removing src/src_libp4est_la-p8est_search.lo Removing src/src_libp4est_la-p8est_search.o Removing src/src_libp4est_la-p8est_tets_hexes.lo Removing src/src_libp4est_la-p8est_tets_hexes.o Removing src/src_libp4est_la-p8est_vtk.lo Removing src/src_libp4est_la-p8est_vtk.o Removing src/src_libp4est_la-p8est_wrap.lo Removing src/src_libp4est_la-p8est_wrap.o Removing src/stamp-h1 Removing test/.deps/ Executing: ['git', 'checkout', '-f', '1727693b446ee0c987be701320db0cd5de617cfc'] Looking for P4EST at git.p4est, hg.p4est or a directory starting with ['p4est'] Found a copy of P4EST in git.p4est Executing: ['git', 'submodule', 'update', '--init'] Makefile /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-pgi-kokkos-notpl-cuda10/lib/petsc/conf/pkg.conf.p4est has correct checksum Commit file /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-pgi-kokkos-notpl-cuda10/lib/petsc/conf/pkg.gitcommit.p4est has correct checksum Do not need to rebuild P4EST Checking for library in Download P4EST: ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/lib/libp4est.a', 'libsc.a'] Contents of /gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda: ['include', 'bin', 'etc', 'lib', 'share'] Contents /gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/lib: ['libsc-2.0.so', 'libtriangle.a', 'libp4est.a', 'libz.a', 'libp4est-2.0.7-1727.so', 'libz.so.1', 'libsc.la', 'libsc.so', 'libsc.a', 'libp4est.so', 'libz.so', 'libp4est.la', 'pkgconfig', 'libz.so.1.2.11'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [p4est_init] in library ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/lib/libp4est.a', 'libsc.a'] ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/lib/libz.a', '-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64', '-lblas', '-llapack'] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-7h9Q3B/config.libraries/conftest.o -I/tmp/petsc-7h9Q3B/config.compilerFlags -I/tmp/petsc-7h9Q3B/config.compilers -I/tmp/petsc-7h9Q3B/config.utilities.closure -I/tmp/petsc-7h9Q3B/config.headers -I/tmp/petsc-7h9Q3B/config.utilities.cacheDetails -I/tmp/petsc-7h9Q3B/config.functions -I/tmp/petsc-7h9Q3B/config.utilities.featureTestMacros -I/tmp/petsc-7h9Q3B/config.utilities.missing -I/tmp/petsc-7h9Q3B/PETSc.options.sharedLibraries -I/tmp/petsc-7h9Q3B/PETSc.options.scalarTypes -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.pthread -I/tmp/petsc-7h9Q3B/config.packages.BlasLapack -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.libraries -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char p4est_init(); static void _check_p4est_init() { p4est_init(); } int main() { _check_p4est_init();; return 0; } Executing: mpicc -o /tmp/petsc-7h9Q3B/config.libraries/conftest -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O0 /tmp/petsc-7h9Q3B/config.libraries/conftest.o -Wl,-rpath,/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/lib -L/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/lib -lp4est -lsc -Wl,-rpath,/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/lib -L/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/lib -lz -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/pgi-19.9/netlib-lapack-3.8.0-osgnhlqnprebssng2vsxn3dtgmwfutbb/lib64 -lblas -llapack -lstdc++ -ldl Defined "HAVE_LIBP4EST" to "1" Defined "HAVE_LIBSC" to "1" Checking for optional headers [] in Download P4EST: ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] Found header files [] in ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] Checking for headers ['p4est_bits.h'] in Download P4EST: ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['p4est_bits.h'] in ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] Checking include with compiler flags var CPPFLAGS ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include', '/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-7h9Q3B/config.setCompilers -I/tmp/petsc-7h9Q3B/config.types -I/tmp/petsc-7h9Q3B/config.packages.cuda -I/tmp/petsc-7h9Q3B/config.packages.MPI -I/tmp/petsc-7h9Q3B/config.packages.zlib -I/tmp/petsc-7h9Q3B/config.packages.pthread -I/tmp/petsc-7h9Q3B/config.headers -I/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include -I/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include /tmp/petsc-7h9Q3B/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['p4est_bits.h'] in ['/gpfs/alpine/world-shared/geo127/petsc/arch-opt-pgi-kokkos-cuda/include'] ============================================================================================= TESTING: checkVersion from config.packages.p4est(config/BuildSystem/config/package.py:1031) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.p4est(config/BuildSystem/config/package.py:960) By default we don't care about checking if the library is shared child config.packages.p4est 1.163630 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/packages/mkl_sparse_optimize.py:48) ============================================================================================= TESTING: checkVersion from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:1031) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:960) By default we don't care about checking if the library is shared child config.packages.mkl_sparse_optimize 0.002126 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_sparse(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.mkl_sparse(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.mkl_sparse(config/BuildSystem/config/packages/mkl_sparse.py:21) ============================================================================================= TESTING: checkVersion from config.packages.mkl_sparse(config/BuildSystem/config/package.py:1031) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.mkl_sparse(config/BuildSystem/config/package.py:960) By default we don't care about checking if the library is shared child config.packages.mkl_sparse 0.001982 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_cpardiso(config/BuildSystem/config/packages/mkl_cpardiso.py:20) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(config/BuildSystem/config/package.py:964) Called if --with-packagename=0; does nothing by default child config.packages.mkl_cpardiso 0.001372 ============================================================================================= TESTING: consistencyChecks from config.packages.kokkos(config/BuildSystem/config/package.py:968) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.kokkos(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.kokkos(config/BuildSystem/config/packages/kokkos.py:169) ================================================================================== Checking for a functional kokkos Looking for KOKKOS at git.kokkos, hg.kokkos or a directory starting with ['kokkos'] Found a copy of KOKKOS in git.kokkos Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'd4ed86ffb1b156faaa0f936ce839cfd6d3282478^{commit}'] Executing: ['git', 'rev-parse', 'd4ed86ffb1b156faaa0f936ce839cfd6d3282478'] stdout: d4ed86ffb1b156faaa0f936ce839cfd6d3282478 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', 'd4ed86ffb1b156faaa0f936ce839cfd6d3282478'] Removing configure arguments ['-DCMAKE_CXX_COMPILER="mpicxx"'] **** Configure header /tmp/petsc-7h9Q3B/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_Alignx(a,b) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CUDA_GENERATION 70 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CUDA 1 #define PETSC_HAVE_CUDA_DIALECT_CXX11 1 #define PETSC_HAVE_CUSOLVERDNDPOTRI 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX_FIX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_DLADDR 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1 #define PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_GPU_AWARE 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_OMPI_MAJOR_VERSION 10 #define PETSC_HAVE_OMPI_MINOR_VERSION 03 #define PETSC_HAVE_OMPI_RELEASE_VERSION 01 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SCHED_CPU_SET_T 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 16 #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_PYTHON_EXE "/usr/bin/python" #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_VERSION_BRANCH_GIT "adams/landau-mass-opt" #define PETSC_VERSION_DATE_GIT "2021-05-29 15:10:53 -0400" #define PETSC_VERSION_GIT "v3.15.0-651-g79fd416" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #endif **** C specific Configure header /tmp/petsc-7h9Q3B/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Kokkos requires C++14 but the CUDAcompiler only supports C++11 ******************************************************************************* File "/gpfs/alpine/csc314/scratch/adams/petsc/config/configure.py", line 458, in petsc_configure framework.configure(out = sys.stdout) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 1339, in configure self.processChildren() File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 1327, in processChildren self.serialEvaluation(self.childGraph) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 1302, in serialEvaluation child.configure() File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/package.py", line 1151, in configure self.executeTest(self.configureLibrary) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/base.py", line 138, in executeTest ret = test(*args,**kargs) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/packages/kokkos.py", line 171, in configureLibrary config.package.CMakePackage.configureLibrary(self) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/package.py", line 904, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/package.py", line 478, in generateGuesses d = self.checkDownload() File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/package.py", line 612, in checkDownload return self.getInstallDir() File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/package.py", line 367, in getInstallDir installDir = self.Install() File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/package.py", line 1771, in Install args = self.formCMakeConfigureArgs() File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/packages/kokkos.py", line 162, in formCMakeConfigureArgs raise RuntimeError('Kokkos requires '+self.kokkos_cxxdialect+' but the '+lang.upper()+ 'compiler only supports '+langdialect) ================================================================================ Finishing configure run at Sat, 29 May 2021 16:24:21 -0400 ================================================================================