Executing: uname -s stdout: Linux ================================================================================ ================================================================================ Starting configure run at Sun, 16 May 2021 03:54:37 -0700 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-mpi-dir=/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc --with-cuda-dir=/usr/common/software/sles15_cgpu/cuda/11.1.1 CFLAGS=" -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4" CXXFLAGS=" -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4" FFLAGS=" -g " COPTFLAGS=" -O2" CXXOPTFLAGS=" -O2" FOPTFLAGS=" -O2" --CUDAFLAGS="-Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4" --CUDAOPTFLAGS=-O3 --CUDALIBS=-lnvToolsExt --download-fblaslapack=1 --with-debugging=0 --download-kokkos --download-kokkos-kernels --with-kokkos-kernels-tpl=0 --download-kokkos-cmake-arguments=-DKokkos_ENABLE_AGGRESSIVE_VECTORIZATION=ON --with-make-np=8 --with-ctable=0 --with-mpiexec="srun -G 1 -c 10" --with-batch=0 PETSC_ARCH=arch-cori-gpu-opt-kokkos-gcc --with-cuda=1 --download-p4est=1 --with-zlib=1 --with-fortran-interface=0 Working directory: /global/u2/m/madams/petsc Machine platform: ('Linux', 'cgpu11', '4.12.14-lp150.12.82-default', '#1 SMP Tue Nov 12 16:32:38 UTC 2019 (c939e24)', 'x86_64', 'x86_64') Python version: 2.7.14 (default, Oct 12 2017, 15:50:02) [GCC] ================================================================================ Environmental variables OLDPWD=/global/homes/m/madams PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS_GNU= CRAY_LIBSCI_BASE_DIR=/opt/cray/pe/libsci/19.06.1 CPU=x86_64 PE_PETSC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/petsc/3.11.2.0/complex/@PRGENV@/@PE_PETSC_DEFAULT_GENCOMPS@/@PE_PETSC_DEFAULT_TARGET@/lib/pkgconfig PE_LIBSCI_GENCOMPILERS_CRAY_x86_64=9.0 PE_FFTW_DEFAULT_TARGET_share=share HISTSIZE=100 PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_x86_64=190 ATP_HOME=/opt/cray/pe/atp/2.1.3 PE_LIBSCI_GENCOMPS_CRAYCLANG_x86_64=90 SLURM_CPU_BIND_VERBOSE=quiet craype_already_loaded=0 KMP_AFFINITY=balanced PE_LIBSCI_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/libsci/19.06.1/@PRGENV@/@PE_LIBSCI_GENCOMPS@/@PE_LIBSCI_TARGET@/lib/pkgconfig FPATH=:/opt/cray/pe/modules/3.2.11.4/init/sh_funcs/no_redirect:/opt/cray/pe/modules/3.2.11.4/init/sh_funcs/no_redirect:/opt/cray/pe/modules/3.2.11.4/init/sh_funcs/no_redirect PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/netcdf-hdf5parallel/4.6.3.2/@PRGENV@/@PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig SLURM_PTY_PORT=64021 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_x86_skylake=8.2 7.1 PE_HDF5_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/hdf5/1.10.5.2/@PRGENV@/@PE_HDF5_DEFAULT_GENCOMPS@/lib/pkgconfig ZAP_LIBPATH=/opt/ovis/lib64/ovis-ldms XDG_SESSION_ID=100825 PE_TRILINOS_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/trilinos/12.14.1.0/@PRGENV@/@PE_TRILINOS_DEFAULT_GENCOMPS@/@PE_TRILINOS_DEFAULT_TARGET@/lib/pkgconfig NVHPC_VERSION=20.11 PE_FFTW_DEFAULT_TARGET_x86_skylake=x86_skylake SLURM_PRIO_PROCESS=0 PE_SMA_DEFAULT_DIR_PGI_DEFAULT64=64 CSCRATCH=/global/cscratch1/sd/madams KSH_AUTOLOAD=1 SLURM_LOCALID=0 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAYCLANG_haswell=9.0 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_haswell=8.2 7.1 CSHEDIT=emacs PE_TRILINOS_DEFAULT_GENCOMPILERS_INTEL_x86_64=19.0 CPP=cpp CRAY_UDREG_INCLUDE_OPTS=-I/opt/cray/udreg/2.3.2-7.0.1.1_3.49__g8175d3d.ari/include USER=madams PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_x86_skylake=19.0 PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_x86_64=160 PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 7.1 JDK_HOME=/usr/lib64/jvm/java SLURM_JOB_CPUS_PER_NODE_PACK_GROUP_0=10 PE_HDF5_DEFAULT_GENCOMPS_GNU= PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_x86_64=19.0 CRAY_LIBSCI_DIR=/opt/cray/pe/libsci/19.06.1 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_x86_64=19.0 PE_HDF5_PARALLEL_DEFAULT_GENCOMPILERS_GNU=8.2 7.1 PE_TPSL_DEFAULT_GENCOMPILERS_CRAYCLANG_haswell=9.0 PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_skylake=190 PE_LIBSCI_DEFAULT_OMP_REQUIRES= PE_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/netcdf/4.6.3.2/@PRGENV@/@PE_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig PE_LIBSCI_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_64=90 PE_MPICH_DEFAULT_FIXED_PRGENV=INTEL PE_HDF5_PARALLEL_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_sandybridge=90 TMPDIR=/tmp PE_PKGCONFIG_PRODUCTS_DEFAULT=PE_PAPI PE_TPSL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/tpsl/19.06.1/@PRGENV@/@PE_TPSL_DEFAULT_GENCOMPS@/@PE_TPSL_DEFAULT_TARGET@/lib/pkgconfig PE_GA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/ga/5.3.0.10/@PRGENV@/@PE_GA_DEFAULT_GENCOMPS@/lib/pkgconfig PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_GNU= _LMFILES_=/opt/cray/pe/modulefiles/modules/3.2.11.4:/global/common/software/nersc/cle7/extra_modulefiles/esslurm:/global/common/software/nersc/cle7/extra_modulefiles/cgpu/1.0:/global/common/software/nersc/sles15_cgpu/extra_modulefiles/gcc/8.3.0:/global/common/software/nersc/sles15_cgpu/extra_modulefiles/cuda/11.1.1:/global/common/software/nersc/sles15_cgpu/extra_modulefiles/hpcsdk/20.11:/global/common/software/nersc/sles15_cgpu/extra_modulefiles/openmpi/4.0.3:/opt/cray/pe/modulefiles/craype/2.6.2:/opt/cray/pe/craype-targets/default/modulefiles/craype-network-aries:/opt/cray/pe/modulefiles/cray-libsci/19.06.1:/opt/cray/ari/modulefiles/udreg/2.3.2-7.0.1.1_3.49__g8175d3d.ari:/opt/cray/ari/modulefiles/ugni/6.0.14.0-7.0.1.1_7.51__ge78e5b0.ari:/opt/cray/pe/modulefiles/pmi/5.0.14:/opt/cray/ari/modulefiles/dmapp/7.1.1-7.0.1.1_4.62__g38cf134.ari:/opt/cray/ari/modulefiles/gni-headers/5.0.12.0-7.0.1.1_6.40__g3b1768f.ari:/opt/cray/ari/modulefiles/xpmem/2.2.20-7.0.1.1_4.21__g0475745.ari:/opt/cray/ari/modulefiles/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari:/opt/cray/ari/modulefiles/dvs/2.12_2.2.167-7.0.1.1_17.2__ge473d3a2:/opt/cray/ari/modulefiles/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari:/opt/cray/ari/modulefiles/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari:/opt/cray/pe/modulefiles/atp/2.1.3:/opt/cray/pe/modulefiles/PrgEnv-gnu/6.0.5:/global/common/software/nersc/cle7/extra_modulefiles/cmake/3.18.2 MODULE_VERSION=3.2.11.4 LIBSCI_VERSION=19.06.1 CRAY_XPMEM_INCLUDE_OPTS=-I/opt/cray/xpmem/2.2.20-7.0.1.1_4.21__g0475745.ari/include PE_MPICH_DEFAULT_DIR_CRAYCLANG_DEFAULT64=64 FC=/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/nvfortran CUDA_VERSION=11.1.1 PE_MPICH_DEFAULT_GENCOMPS_GNU=82 81 71 HOME=/global/homes/m/madams LS_OPTIONS=-N --color=none -T 0 PE_LIBSCI_GENCOMPS_INTEL_x86_64=160 SLURM_JOB_QOS=gpu_interactive PE_GA_DEFAULT_FIXED_PRGENV=CRAY INTEL DVS_MAXNODES=1__ PE_GA_DEFAULT_GENCOMPILERS_GNU=8.2 7.3 OPENMPI_DIR=/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc SLURM_PROCID=0 PE_PAPI_DEFAULT_ACCEL_LIBS_nvidia35=,-lcupti,-lcudart,-lcuda ATP_IGNORE_SIGTERM=1 HOST=cori05 PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU LAND_LIB=-L/lib64 -littnotify SLURM_CPUS_ON_NODE=10 PE_MPICH_DEFAULT_GENCOMPILERS_GNU=8.2 8.1 7.1 CRAY_LIBSCI_VERSION=19.06.1 MAN_POSIXLY_CORRECT=1 PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_x86_skylake=90 PE_FFTW_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/fftw/3.3.8.4/@PE_FFTW_DEFAULT_TARGET@/lib/pkgconfig PE_PETSC_DEFAULT_GENCOMPS_INTEL_haswell=190 NERSC_HOST=cori PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.11.1.1/@PRGENV@/@PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig SLURM_STEP_ID=0 JRE_HOME=/usr/lib64/jvm/java SLURMD_NODENAME=cgpu11 PE_MPICH_DEFAULT_GENCOMPILERS_CRAYCLANG=9.0 PE_FFTW_DEFAULT_TARGET_x86_cascadelake=x86_cascadelake PE_LIBSCI_DEFAULT_GENCOMPS_GNU_x86_64=81 71 PE_LIBSCI_REQUIRED_PRODUCTS=PE_MPICH PE_HDF5_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL LIBGL_ALWAYS_INDIRECT=1 PE_SMA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.7.10/gni/sma@PE_SMA_DEFAULT_DIR_DEFAULT64@/lib64/pkgconfig PE_TPSL_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 CRAYCLANG CRAYCLANG64 GNU GNU64 INTEL INTEL64 SLURM_TOPOLOGY_ADDR=cgpu11 SLURM_PTY_WIN_ROW=102 SLURM_DISTRIBUTION=block NVHPC=/usr/common/software/sles15_cgpu/hpcsdk/20.11 PE_TPSL_64_DEFAULT_GENCOMPS_CRAYCLANG_sandybridge=90 PE_MPICH_PKGCONFIG_VARIABLES=PE_MPICH_NV_LIBS_@accelerator@:PE_MPICH_ALTERNATE_LIBS_@multithreaded@:PE_MPICH_ALTERNATE_LIBS_@dpm@ LIBSCI_BASE_DIR=/opt/cray/pe/libsci/19.06.1 PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_skylake=82 71 SLURM_SUBMIT_HOST=cori05 UCX_NET_DEVICES=mlx5_0:1,mlx5_2:1,mlx5_4:1,mlx5_6:1 ATP_POST_LINK_OPTS=-Wl,-L/opt/cray/pe/atp/2.1.3/libApp/ PE_TRILINOS_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_HDF5_PARALLEL:PE_NETCDF_HDF5PARALLEL:PE_LIBSCI:PE_TPSL PE_TPSL_64_DEFAULT_GENCOMPS_GNU_sandybridge=82 71 PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/hdf5-parallel/1.10.5.2/@PRGENV@/@PE_HDF5_PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig PE_GA_DEFAULT_VOLATILE_PRGENV=GNU PE_FFTW_DEFAULT_TARGET_broadwell=broadwell LOADEDMODULES=modules/3.2.11.4:esslurm:cgpu/1.0:gcc/8.3.0:cuda/11.1.1:hpcsdk/20.11:openmpi/4.0.3:craype/2.6.2:craype-network-aries:cray-libsci/19.06.1:udreg/2.3.2-7.0.1.1_3.49__g8175d3d.ari:ugni/6.0.14.0-7.0.1.1_7.51__ge78e5b0.ari:pmi/5.0.14:dmapp/7.1.1-7.0.1.1_4.62__g38cf134.ari:gni-headers/5.0.12.0-7.0.1.1_6.40__g3b1768f.ari:xpmem/2.2.20-7.0.1.1_4.21__g0475745.ari:job/2.2.4-7.0.1.1_3.48__g36b56f4.ari:dvs/2.12_2.2.167-7.0.1.1_17.2__ge473d3a2:alps/6.6.58-7.0.1.1_6.20__g437d88db.ari:rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari:atp/2.1.3:PrgEnv-gnu/6.0.5:cmake/3.18.2 PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_x86_64=9.0 PE_PETSC_DEFAULT_GENCOMPS_INTEL_sandybridge=190 PE_PAPI_DEFAULT_PKGCONFIG_VARIABLES=PE_PAPI_ACCEL_LIBS_@accelerator@ PE_PAPI_ACCEL_FAMILY_LIBS_@accelerator_family@ PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_sandybridge=19.0 CRAY_LD_LIBRARY_PATH=/opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/lib64:/opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/lib64:/opt/cray/xpmem/2.2.20-7.0.1.1_4.21__g0475745.ari/lib64:/opt/cray/dmapp/7.1.1-7.0.1.1_4.62__g38cf134.ari/lib64:/opt/cray/pe/pmi/5.0.14/lib64:/opt/cray/ugni/6.0.14.0-7.0.1.1_7.51__ge78e5b0.ari/lib64:/opt/cray/udreg/2.3.2-7.0.1.1_3.49__g8175d3d.ari/lib64:/opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib PE_TRILINOS_DEFAULT_VOLATILE_PRGENV=CRAYCLANG GNU INTEL CFS=/global/cfs/cdirs PE_LIBSCI_DEFAULT_VOLATILE_PRGENV=CRAY CRAYCLANG GNU INTEL PE_PAPI_DEFAULT_ACCEL_LIBS= PYTHONPATH=/opt/mods/lib/python3.6/site-packages:/opt/ovis/lib/python3.6/site-packages LESS=-M -I -R PE_LIBSCI_GENCOMPILERS_GNU_x86_64=8.1 7.1 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_x86_64=9.0 CRAYPE_NETWORK_TARGET=aries USERMODULES=PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi:acml:alps:apprentice:apprentice2:atp:blcr:cce:chapel:cray-ccdb:cray-fftw:cray-ga:cray-hdf5:cray-hdf5-parallel:cray-lgdb:cray-libsci:cray-libsci_acc:cray-mpich:cray-mpich-compat:cray-mpich2:cray-netcdf:cray-netcdf-hdf5parallel:cray-parallel-netcdf:cray-petsc:cray-petsc-complex:cray-shmem:cray-snplauncher:cray-tpsl:cray-trilinos:craypat:craype:craypkg-gen:cudatoolkit:ddt:fftw:ga:gcc:hdf5:hdf5-parallel:intel:iobuf:java:lgdb:libfast:libsci_acc:mpich1:netcdf:netcdf-hdf5parallel:netcdf-nofsync:netcdf-nofsync-hdf5parallel:ntk:onesided:papi:parallel-netcdf:pathscale:perftools:perftools-lite:petsc:petsc-complex:pgi:pmi:stat:totalview:tpsl:trilinos:xt-asyncpe:xt-craypat:xt-lgdb:xt-libsci:xt-mpich2:xt-mpt:xt-papi:xt-shmem:xt-totalview XKEYSYMDB=/usr/X11R6/lib/X11/XKeysymDB SLURM_JOB_USER=madams PAT_RT_HWPC=1 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_x86_skylake=8.2 7.1 SLURM_PTY_WIN_COL=304 PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_x86_skylake=190 SLURM_STEPID=0 PE_PKGCONFIG_PRODUCTS=PE_LIBSCI PE_LIBSCI_MODULE_NAME=cray-libsci/19.06.1 PE_FFTW_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PELOCAL_PRGENV=true SLURM_UMASK=0007 TARGETMODULES=craype-abudhabi:craype-abudhabi-cu:craype-accel-host:craype-accel-nvidia20:craype-accel-nvidia30:craype-accel-nvidia35:craype-barcelona:craype-broadwell:craype-haswell:craype-hugepages128K:craype-hugepages128M:craype-hugepages16M:craype-hugepages256M:craype-hugepages2M:craype-hugepages32M:craype-hugepages4M:craype-hugepages512K:craype-hugepages512M:craype-hugepages64M:craype-hugepages8M:craype-intel-knc:craype-interlagos:craype-interlagos-cu:craype-istanbul:craype-ivybridge:craype-mc12:craype-mc8:craype-mic-knl:craype-network-aries:craype-network-gemini:craype-network-infiniband:craype-network-none:craype-network-seastar:craype-sandybridge:craype-shanghai:craype-target-compute_node:craype-target-local_host:craype-target-native:craype-xeon:xtpe-barcelona:xtpe-interlagos:xtpe-interlagos-cu:xtpe-istanbul:xtpe-mc12:xtpe-mc8:xtpe-network-gemini:xtpe-network-seastar:xtpe-shanghai:xtpe-target-native:xtpe-xeon PE_PAPI_DEFAULT_ACCEL_FAMILY_LIBS_nvidia=,-lcupti,-lcudart,-lcuda OMPI_FC=gfortran CRAY_DMAPP_POST_LINK_OPTS=-L/opt/cray/dmapp/7.1.1-7.0.1.1_4.62__g38cf134.ari/lib64 SLURM_JOB_NAME=sh PE_TPSL_DEFAULT_GENCOMPS_CRAYCLANG_sandybridge=90 PE_TPSL_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 LS_COLORS=no=00:fi=00:di=01;34:ln=00;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=41;33;01:ex=00;32:*.cmd=00;32:*.exe=01;32:*.com=01;32:*.bat=01;32:*.btm=01;32:*.dll=01;32:*.tar=00;31:*.tbz=00;31:*.tgz=00;31:*.rpm=00;31:*.deb=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.lzma=00;31:*.zip=00;31:*.zoo=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.tb2=00;31:*.tz2=00;31:*.tbz2=00;31:*.xz=00;31:*.avi=01;35:*.bmp=01;35:*.dl=01;35:*.fli=01;35:*.gif=01;35:*.gl=01;35:*.jpg=01;35:*.jpeg=01;35:*.mkv=01;35:*.mng=01;35:*.mov=01;35:*.mp4=01;35:*.mpg=01;35:*.pcx=01;35:*.pbm=01;35:*.pgm=01;35:*.png=01;35:*.ppm=01;35:*.svg=01;35:*.tga=01;35:*.tif=01;35:*.webm=01;35:*.webp=01;35:*.wmv=01;35:*.xbm=01;35:*.xcf=01;35:*.xpm=01;35:*.aiff=00;32:*.ape=00;32:*.au=00;32:*.flac=00;32:*.m4a=00;32:*.mid=00;32:*.mp3=00;32:*.mpc=00;32:*.ogg=00;32:*.voc=00;32:*.wav=00;32:*.wma=00;32:*.wv=00;32: PE_SMA_DEFAULT_COMPFLAG= PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_64=82 71 SLURM_SUBMIT_DIR=/global/u2/m/madams/petsc PE_TPSL_DEFAULT_GENCOMPS_CRAY_sandybridge=90 CPATH=/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/comm_libs/nvshmem/include:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/comm_libs/nccl/include:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/math_libs/include MODULE_VERSION_STACK=3.2.11.4 CMAKE_PREFIX_PATH=/usr/common/software/sles15_cgpu/cuda/11.1.1 PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_sandybridge=19.0 SLURM_JOB_NODELIST=cgpu11 SLURM_CLUSTER_NAME=escori PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_skylake=82 71 SHLVL=3 PE_MPICH_DEFAULT_GENCOMPS_CRAY=90 PE_MPICH_DEFAULT_DIR_CRAY_DEFAULT64=64 PE_LIBSCI_PKGCONFIG_VARIABLES=PE_LIBSCI_OMP_REQUIRES_@openmp@:PE_SCI_EXT_LIBPATH:PE_SCI_EXT_LIBNAME PE_PETSC_DEFAULT_GENCOMPS_CRAY_sandybridge=90 CRAY_XPMEM_POST_LINK_OPTS=-L/opt/cray/xpmem/2.2.20-7.0.1.1_4.21__g0475745.ari/lib64 PETSC_DIR=/global/homes/m/madams/petsc PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_sandybridge=9.0 PE_ATP_PKGCONFIG_VARIABLES=ATP_CFLAGS_@prgenv@_@language@ PE_PETSC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI:PE_HDF5_PARALLEL:PE_TPSL XTPE_NETWORK_TARGET=aries PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_x86_skylake=9.0 PE_TPSL_64_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_64=190 BASH_ENV=/global/homes/m/madams/.bashrc MODULEPATH=/global/common/software/nersc/sles15_cgpu/extra_modulefiles:/opt/cray/ari/modulefiles:/opt/cray/pe/craype-targets/default/modulefiles:/opt/cray/pe/modulefiles:/opt/cray/modulefiles:/opt/modulefiles:/global/common/software/nersc/cle7/modulefiles:/global/common/software/nersc/cle7/extra_modulefiles:/usr/common/ftg/modulefiles PE_HDF5_DEFAULT_GENCOMPILERS_GNU=8.2 7.1 PE_TPSL_DEFAULT_GENCOMPS_CRAYCLANG_x86_skylake=90 PE_TPSL_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_skylake=9.0 PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_sandybridge=190 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAYCLANG_sandybridge=9.0 PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_x86_64=90 OMPI_CXX=g++ PE_PETSC_DEFAULT_GENCOMPS_CRAYCLANG_x86_skylake=90 INTEL_LICENSE_FILE=28518@crayintel.licenses.nersc.gov:28518@intel.licenses.nersc.gov CRAY_RCA_INCLUDE_OPTS=-I/opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/include -I/opt/cray/krca/2.2.6-7.0.1.1_5.46__gb641b12.ari/include -I/opt/cray-hss-devel/9.0.0/include PE_TRILINOS_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 7.1 CRAY_ALPS_INCLUDE_OPTS=-I/opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/include UCX_TLS=rc,cuda_copy,gdr_copy,cuda_ipc,sm,dc,self SLURM_JOB_CPUS_PER_NODE=10 HUGETLB_VERBOSE=0 PE_FFTW_DEFAULT_TARGET_ivybridge=ivybridge PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_haswell=19.0 DVS_INCLUDE_OPTS=-I/opt/cray/dvs/2.12_2.2.167-7.0.1.1_17.2__ge473d3a2/include CRAY_UGNI_POST_LINK_OPTS=-L/opt/cray/ugni/6.0.14.0-7.0.1.1_7.51__ge78e5b0.ari/lib64 SHMEM_ABORT_ON_ERROR=1 PKG_CONFIG_PATH_DEFAULT=/opt/cray/pe/papi/5.7.0.2/lib64/pkgconfig LESSOPEN=lessopen.sh %s PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_skylake=8.2 7.1 PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_x86_skylake=9.0 SSH_TTY=/dev/pts/95 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_sandybridge=8.2 7.1 SRUN_DEBUG=3 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_haswell=19.0 PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_x86_64=9.0 PE_TRILINOS_DEFAULT_GENCOMPS_GNU_x86_64=82 71 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 PE_PARALLEL_NETCDF_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL SLURM_STEP_NODELIST=cgpu11 PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_64=82 71 SSH_CLIENT=128.55.210.212 52220 22 LOGNAME=madams PE_MPICH_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.7.10/gni/mpich-@PRGENV@@PE_MPICH_DEFAULT_DIR_DEFAULT64@/@PE_MPICH_DEFAULT_GENCOMPS@/lib/pkgconfig PATH=/global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin:/opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin:/opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin:/opt/cray/alps/default/bin:/opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin:/opt/cray/pe/craype/2.6.2/bin:/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin:/usr/common/software/sles15_cgpu/cuda/11.1.1/bin:/usr/common/software/sles15_cgpu/gcc/8.3.0/bin:/opt/esslurm/bin:/opt/cray/pe/modules/3.2.11.4/bin:/usr/common/software/bin:/usr/common/nsg/bin:/opt/ovis/bin:/opt/ovis/sbin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/opt/cray/pe/bin PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_haswell=190 PE_HDF5_PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_x86_skylake=19.0 PE_FFTW2_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PE_LIBSCI_OMP_REQUIRES= PE_INTEL_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.11.1.1/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/netcdf-hdf5parallel/4.6.3.2/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/netcdf/4.6.3.2/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/mpt/7.7.10/gni/mpich-INTEL/16.0/lib/pkgconfig:/opt/cray/pe/hdf5-parallel/1.10.5.2/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/hdf5/1.10.5.2/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/ga/5.3.0.10/INTEL/18.0/lib/pkgconfig SLURM_WORKING_CLUSTER=escori:corique01-144:6820:8960:109 SLURM_STEP_TASKS_PER_NODE=1 PE_SMA_DEFAULT_PKGCONFIG_VARIABLES=PE_SMA_COMPFLAG_@prgenv@ PE_PETSC_DEFAULT_GENCOMPS_CRAYCLANG_haswell=90 PE_PAPI_DEFAULT_ACCELL_FAMILY_LIBS= PE_PKGCONFIG_LIBS=AtpSigHandler:cray-rca:libsci_mpi:libsci TMOUT=1800 PE_SMA_DEFAULT_DIR_CRAY_DEFAULT64=64 ATP_CFLAGS= PE_LIBSCI_DEFAULT_GENCOMPILERS_GNU_x86_64=8.1 7.1 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_x86_skylake=9.0 CRAYPE_DIR=/opt/cray/pe/craype/2.6.2 PE_CRAYCLANG_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.11.1.1/CRAYCLANG/9.0/lib/pkgconfig:/opt/cray/pe/netcdf-hdf5parallel/4.6.3.2/CRAYCLANG/9.0/lib/pkgconfig:/opt/cray/pe/netcdf/4.6.3.2/CRAYCLANG/9.0/lib/pkgconfig:/opt/cray/pe/hdf5-parallel/1.10.5.2/CRAYCLANG/9.0/lib/pkgconfig:/opt/cray/pe/hdf5/1.10.5.2/CRAYCLANG/9.0/lib/pkgconfig XDG_DATA_DIRS=/usr/share SLURM_NODELIST=cgpu11 PE_MPICH_TARGET_VAR_nvidia35=-lcudart CRAY_PMI_INCLUDE_OPTS=-I/opt/cray/pe/pmi/5.0.14/include MANPATH=/opt/cray/pe/atp/2.1.3/man:/opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/man:/opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/man:/opt/cray/pe/pmi/5.0.14/man:/opt/cray/pe/libsci/19.06.1/man:/opt/cray/pe/man/csmlversion:/opt/cray/pe/craype/2.6.2/man:/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/share:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/man:/usr/common/software/sles15_cgpu/cuda/11.1.1/doc/man:/usr/common/software/sles15_cgpu/gcc/8.3.0/share/man:/opt/cray/pe/modules/3.2.11.4/share/man:/usr/common/software/man:/usr/common/nsg/man:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/opt/cray/share/man:/opt/cray/share/man:/opt/cray/pe/man PE_TPSL_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 7.1 PROFILEREAD=true PE_PETSC_DEFAULT_GENCOMPS_GNU_sandybridge=82 71 PE_NETCDF_HDF5PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5_PARALLEL PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_skylake=9.0 ATP_CFLAGS_GNU_FORTRAN=-fno-backtrace GCC_ROOT=/usr/common/software/sles15_cgpu/gcc/8.3.0 SLURM_STEP_LAUNCHER_PORT=64022 DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/13302/bus PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_haswell=9.0 PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_64=90 HOSTNAME=cori05 PE_FFTW_DEFAULT_TARGET_mic_knl=mic_knl PETSC_ARCH=arch-cori-cuda11-opt-gcc PE_FFTW_DEFAULT_TARGET_sandybridge=sandybridge PE_TPSL_DEFAULT_GENCOMPS_INTEL_sandybridge=190 MACHTYPE=x86_64-suse-linux PE_PETSC_DEFAULT_GENCOMPILERS_CRAYCLANG_haswell=9.0 PE_NETCDF_HDF5PARALLEL_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL BASH_FUNC_module%%=() { eval `/opt/cray/pe/modules/3.2.11.4/bin/modulecmd bash $*` } MINICOM=-c on PE_TPSL_64_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI PE_MPICH_NV_LIBS= CVS_RSH=ssh PKGCONFIG_ENABLED=1 PE_TPSL_64_DEFAULT_GENCOMPS_GNU_haswell=82 71 PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPILERS_GNU=8.2 7.1 SLURM_JOB_NUM_NODES=1 DVS_VERSION=0.9.0 LIBRARYMODULES=acml:alps:cray-dwarf:cray-fftw:cray-ga:cray-hdf5:cray-hdf5-parallel:cray-libsci:cray-libsci_acc:cray-mpich:cray-mpich-abi:cray-mpich2:cray-netcdf:cray-netcdf-hdf5parallel:cray-parallel-netcdf:cray-petsc:cray-petsc-complex:cray-shmem:cray-tpsl:cray-trilinos:cudatoolkit:fftw:ga:hdf5:hdf5-parallel:iobuf:libfast:netcdf:netcdf-hdf5parallel:ntk:onesided:papi:petsc:petsc-complex:pmi:tpsl:trilinos:xt-libsci:xt-mpich2:xt-mpt:xt-papi MODULESHOME=/opt/cray/pe/modules/3.2.11.4 PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAY_x86_64=9.0 PE_TPSL_DEFAULT_GENCOMPS_CRAY_haswell=90 GCC_VERSION=8.3.0 PE_PETSC_DEFAULT_GENCOMPS_CRAY_haswell=90 PE_MPICH_NV_LIBS_nvidia35=-lcudart PE_LIBSCI_GENCOMPS_CRAY_x86_64=90 XDG_CONFIG_DIRS=/etc/xdg PE_TPSL_64_DEFAULT_GENCOMPS_CRAYCLANG_haswell=90 PE_TRILINOS_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 PE_NETCDF_DEFAULT_GENCOMPS_GNU= OMPI_MCA_pml=ucx PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_haswell=8.2 7.1 PAGER=less PE_TPSL_64_DEFAULT_GENCOMPS_CRAYCLANG_x86_skylake=90 PE_GA_DEFAULT_GENCOMPS_GNU=82 73 LIBGL_DEBUG=quiet CRAY_PMI_POST_LINK_OPTS=-L/opt/cray/pe/pmi/5.0.14/lib64 ATP_MRNET_COMM_PATH=/opt/cray/pe/atp/2.1.3/libexec/atp_mrnet_commnode_wrapper PE_LIBSCI_GENCOMPILERS_INTEL_x86_64=16.0 SLURM_CPUS_PER_TASK=10 LD_LIBRARY_PATH=/opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/lib64:/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib:/usr/common/software/sles15_cgpu/ucx/1.8.1/lib:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/comm_libs/nvshmem/lib:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/comm_libs/nccl/lib:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/math_libs/lib64:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/lib:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/lib64:/usr/common/software/sles15_cgpu/cuda/11.1.1/extras/CUPTI/lib64:/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64:/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64/compat:/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64:/opt/esslurm/lib64:/usr/lib64:/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64/stubs SLURM_TASK_PID=54327 G_BROKEN_FILENAMES=1 GIT_PS1_SHOWUPSTREAM=auto F90=/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/nvfortran OMPI_CC=gcc CUDA_ROOT=/usr/common/software/sles15_cgpu/cuda/11.1.1 CC=/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/nvc PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_sandybridge=8.2 7.1 PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_skylake=90 PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_skylake=90 SLURM_JOB_PARTITION=gpu SLURM_CPU_BIND_TYPE=mask_cpu: PE_LIBSCI_VOLATILE_PRGENV=CRAY CRAYCLANG GNU INTEL GPG_TTY=/dev/pts/1 IPM_REPORT=full FROM_HEADER= LESSCLOSE=lessclose.sh %s %s SLURM_SRUN_COMM_HOST=128.55.144.135 CRAY_ALPS_POST_LINK_OPTS=-L/opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/lib64 PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_haswell=9.0 PE_MPICH_DEFAULT_GENCOMPILERS_CRAY=9.0 MORE=-sl PE_LIBSCI_DEFAULT_OMP_REQUIRES_openmp=_mp GNU_VERSION=8.3.0 SLURM_JOBID=1921749 HOSTTYPE=x86_64 CRAYPE_VERSION=2.6.2 SLURM_JOB_ACCOUNT=m1759 CRAY_PRGENVGNU=loaded SLURM_CPU_BIND_LIST=0x0000000F800000000F80 TERM=xterm-256color PE_MPICH_ALTERNATE_LIBS_multithreaded=_mt PE_TPSL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI CRAY_GNI_HEADERS_INCLUDE_OPTS=-I/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.40__g3b1768f.ari/include PE_PKG_CONFIG_PATH=/opt/cray/pe/valgrind4hpc/2.8.1/lib/pkgconfig:/opt/cray/pe/cti/1.0.9/lib/pkgconfig:/opt/cray/pe/cti/1.0.7/lib/pkgconfig:/opt/cray/pe/cti/2.8.1/lib/pkgconfig:/opt/cray/pe/atp/3.8.1/lib/pkgconfig PE_CRAY_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.11.1.1/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/netcdf-hdf5parallel/4.6.3.2/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/netcdf/4.6.3.2/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/hdf5-parallel/1.10.5.2/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/hdf5/1.10.5.2/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/ga/5.3.0.10/CRAY/8.6/lib/pkgconfig PE_FFTW_DEFAULT_TARGET_x86_64=x86_64 PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_haswell=19.0 LESSKEY=/etc/lesskey.bin SLURM_JOB_GID=1013302 PWD=/global/homes/m/madams/petsc PE_PKGCONFIG__PRODUCTS=PE_ATP PE_TPSL_DEFAULT_GENCOMPILERS_CRAYCLANG_sandybridge=9.0 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_haswell=9.0 SLURM_STEP_RESV_PORTS=64353-64354 PE_SMA_DEFAULT_COMPFLAG_GNU=-fcray-pointer PE_MPICH_NV_LIBS_nvidia60=-lcudart SLURM_NODE_ALIASES=(null) PE_LIBSCI_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/libsci/19.06.1/@PRGENV@/@PE_LIBSCI_DEFAULT_GENCOMPS@/@PE_LIBSCI_DEFAULT_TARGET@/lib/pkgconfig PE_FFTW_DEFAULT_TARGET_haswell=haswell PE_PETSC_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 PE_LIBSCI_PKGCONFIG_LIBS=libsci_mpi:libsci SHELL=/bin/bash PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU PE_MPICH_DEFAULT_GENCOMPS_CRAYCLANG=90 PE_PETSC_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 CRAYCLANG CRAYCLANG64 GNU GNU64 INTEL INTEL64 LESS_ADVANCED_PREPROCESSOR=no PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_64=190 PE_HDF5_DEFAULT_VOLATILE_PRGENV=GNU PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_sandybridge=9.0 SLURM_TASKS_PER_NODE=1 SVN_EDITOR=vim PRGENVMODULES=PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pgi DMAPP_ABORT_ON_ERROR=1 XDG_RUNTIME_DIR=/run/user/13302 CUDA_PATH=/usr/common/software/sles15_cgpu/cuda/11.1.1 PE_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_sandybridge=9.0 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_sandybridge=8.2 7.1 MPICH_ABORT_ON_ERROR=1 PE_ENV=GNU PE_PRODUCT_LIST=CRAY_RCA:CRAY_ALPS:DVS:CRAY_XPMEM:CRAY_DMAPP:CRAY_PMI:CRAY_UGNI:CRAY_UDREG:CRAY_LIBSCI:CRAYPE:GNU:GCC PE_PETSC_DEFAULT_GENCOMPS_CRAYCLANG_sandybridge=90 PE_PETSC_DEFAULT_GENCOMPS_GNU_haswell=82 71 SDK_HOME=/usr/lib64/jvm/java SLURM_CPU_BIND=quiet,mask_cpu:0x0000000F800000000F80 CXX=/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/nvc++ SLURM_SRUN_COMM_PORT=64022 CRAY_RCA_POST_LINK_OPTS=-L/opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/lib64 -lrca PE_MPICH_TARGET_VAR_nvidia20=-lcudart PE_PETSC_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_skylake=9.0 CSHRCREAD=true SSH_CONNECTION=128.55.210.212 52220 128.55.209.23 22 SLURM_GTIDS=0 TOOLMODULES=apprentice:apprentice2:atp:chapel:cray-lgdb:cray-snplauncher:craypat:craypkg-gen:ddt:gdb:iobuf:papi:perftools:perftools-lite:stat:totalview:xt-craypat:xt-lgdb:xt-papi:xt-totalview SLURM_LAUNCH_NODE_IPADDR=128.55.144.135 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_haswell=8.2 7.1 PE_TPSL_DEFAULT_GENCOMPS_CRAYCLANG_haswell=90 SLURM_STEP_NUM_NODES=1 PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_x86_64=90 SLURM_JOB_UID=13302 CRAY_UGNI_INCLUDE_OPTS=-I/opt/cray/ugni/6.0.14.0-7.0.1.1_7.51__ge78e5b0.ari/include PE_PKGCONFIG_DEFAULT_PRODUCTS=PE_TRILINOS:PE_TPSL_64:PE_TPSL:PE_PETSC:PE_PARALLEL_NETCDF:PE_NETCDF_HDF5PARALLEL:PE_NETCDF:PE_MPICH:PE_LIBSCI:PE_HDF5_PARALLEL:PE_HDF5:PE_GA:PE_FFTW2:PE_FFTW PE_PETSC_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 MAIL=/var/spool/mail/madams PKG_CONFIG_PATH=/opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/lib64/pkgconfig:/opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/lib64/pkgconfig:/opt/cray/xpmem/2.2.20-7.0.1.1_4.21__g0475745.ari/lib64/pkgconfig:/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.40__g3b1768f.ari/lib64/pkgconfig:/opt/cray/dmapp/7.1.1-7.0.1.1_4.62__g38cf134.ari/lib64/pkgconfig:/opt/cray/pe/pmi/5.0.14/lib64/pkgconfig:/opt/cray/ugni/6.0.14.0-7.0.1.1_7.51__ge78e5b0.ari/lib64/pkgconfig:/opt/cray/udreg/2.3.2-7.0.1.1_3.49__g8175d3d.ari/lib64/pkgconfig:/opt/cray/pe/craype/2.6.2/pkg-config:/opt/cray/pe/iobuf/2.0.9/lib/pkgconfig:/opt/cray/pe/fftw/2.1.5.9/lib/pkgconfig:/opt/cray/pe/atp/3.8.1/lib/pkgconfig:/opt/cray/pe/atp/2.1.3/lib/pkgconfig XNLSPATH=/usr/share/X11/nls _=../arch-cori-gpu-opt-kokkos-gcc.py SLURM_STEP_NUM_TASKS=1 PE_PETSC_DEFAULT_GENCOMPILERS_CRAYCLANG_sandybridge=9.0 WINDOWMANAGER=/usr/bin/gnome PE_TPSL_DEFAULT_GENCOMPS_GNU_haswell=82 71 MPICH_MPIIO_DVS_MAXNODES=28 COLORTERM=1 CRAY_DMAPP_INCLUDE_OPTS=-I/opt/cray/dmapp/7.1.1-7.0.1.1_4.62__g38cf134.ari/include -I/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.35__g3b1768f.ari/include PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_sandybridge=19.0 GIT_PS1_SHOWDIRTYSTATE=1 PE_MPICH_ALTERNATE_LIBS_dpm=_dpm QT_SYSTEM_DIR=/usr/share/desktop-data PE_MPICH_NV_LIBS_nvidia20=-lcudart DISPLAY=cori05:32.0 PE_NETCDF_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL LIBRARY_PATH=/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 PE_TPSL_DEFAULT_GENCOMPS_INTEL_haswell=190 SLURM_GPUS=1 PE_LIBSCI_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH OSTYPE=linux PE_NETCDF_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5 PE_LIBSCI_GENCOMPILERS_CRAYCLANG_x86_64=9.0 PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS_GNU= PE_PETSC_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 7.1 PE_TRILINOS_DEFAULT_GENCOMPS_INTEL_x86_64=190 MPICH_GNI_ROUTING_MODE=ADAPTIVE_3 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_x86_skylake=19.0 PE_HDF5_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH gcc_already_loaded=1 F77=/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/nvfortran SLURM_NODEID=0 PE_TPSL_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 SLURM_NNODES=1 PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_x86_64=19.0 autologout=30 LDMSD_PLUGIN_LIBPATH=/opt/ovis/lib64/ovis-ldms PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_skylake=82 71 PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_haswell=90 CRAY_LIBSCI_PREFIX_DIR=/opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64 SLURM_TOPOLOGY_ADDR_PATTERN=node PE_TRILINOS_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 TZ=US/Pacific PE_PARALLEL_NETCDF_DEFAULT_GENCOMPILERS_GNU=8.2 7.3 PE_TPSL_64_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/tpsl/19.06.1/@PRGENV@64/@PE_TPSL_64_DEFAULT_GENCOMPS@/@PE_TPSL_64_DEFAULT_TARGET@/lib/pkgconfig PE_LIBSCI_GENCOMPS_GNU_x86_64=81 71 PE_MPICH_DEFAULT_VOLATILE_PRGENV=GNU CRAYCLANG CRAY CUDA_HOME=/usr/common/software/sles15_cgpu/cuda/11.1.1 PE_TPSL_64_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 CRAYCLANG CRAYCLANG64 GNU GNU64 INTEL INTEL64 PE_LIBSCI_DEFAULT_GENCOMPILERS_INTEL_x86_64=16.0 PE_LIBSCI_OMP_REQUIRES_openmp=_mp LAND_INC=-DHAVE_VTUNE -I/include -I/include SSH_AUTH_SOCK=/tmp/ssh-Swn8Oq40d9/agent.42495 PE_NETCDF_DEFAULT_GENCOMPILERS_GNU=8.2 7.1 CRAY_SITE_LIST_DIR=/etc/opt/cray/pe/modules RCLOCAL_PRGENV=true PE_TPSL_DEFAULT_GENCOMPS_GNU_sandybridge=82 71 SCRATCH=/global/cscratch1/sd/madams PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_64=82 71 PE_LIBSCI_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_DEFAULT_OMP_REQUIRES_@openmp@:PE_SCI_EXT_LIBPATH:PE_SCI_EXT_LIBNAME SLURM_JOB_ID=1921749 PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_skylake=190 CRAY_UDREG_POST_LINK_OPTS=-L/opt/cray/udreg/2.3.2-7.0.1.1_3.49__g8175d3d.ari/lib64 Files in path provided by default path /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin: ctest tput toe tic infocmp cpack cmake infotocap reset tset ncurses6-config tabs ccmake clear captoinfo ncursesw6-config Warning accessing /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin gives errors: [Errno 2] No such file or directory: '/opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin' Warning accessing /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin gives errors: [Errno 2] No such file or directory: '/opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin' Warning accessing /opt/cray/alps/default/bin gives errors: [Errno 2] No such file or directory: '/opt/cray/alps/default/bin' /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin: jattach jdetach jkill jsethid jstat jwait /opt/cray/pe/craype/2.6.2/bin: 2.25.0.craype.ld CC cc driver ftn /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin: mpirun orte-clean mpifort orterun mpiCC mpicc mpicxx ompi_info ompi-server aggregate_profile.pl mpif77 profile2mat.pl mpif90 ompi-clean mpiexec orted mpic++ ortecc orte-server opal_wrapper orte-info /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin: .nvcrc pgzip nv-nsight-cu-cli nvunzip cudarc nvc++ nvsize nvcpuid .nsysrc .nsightrc pgsize pgcpuid .nvccrc .nvprofrc tools pgprepro nvcc nvprof .cuda-gdbrc nvcudainit pgf90 nvfortran nsys pgaccelinfo nvprepro pgf77 makelocalrc pgc++ pgcudainit rcfiles license.nvcompiler pgfortran pgaccelerror cuda-gdb .nvc++rc pgcc nvzip pgf95 localrc .ncurc nsight-sys nvaccelerror addlocalrc ncu nvaccelinfo nvdecode pgunzip .nvfortranrc nvextract nvc /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin: nvlink cuda-gdbserver crt cuda-memcheck nvdisasm nvcc.profile ptxas nvcc cudafe++ nvprof cuobjdump nvprune computeprof cuda-gdb bin2c cuda-uninstaller fatbinary nvvp /usr/common/software/sles15_cgpu/cuda/11.1.1/bin: nvlink cuda-gdbserver crt nv-nsight-cu-cli nsys-ui nsys-exporter cuda-memcheck nvdisasm nvcc.profile ncu-ui ptxas nvcc cudafe++ nsight_ee_plugins_manage.sh nvprof cuobjdump nvprune nsys nv-nsight-cu computeprof cuda-gdb bin2c nsight-sys cuda-uninstaller cuda-install-samples-11.1.sh ncu fatbinary nvvp compute-sanitizer /usr/common/software/sles15_cgpu/gcc/8.3.0/bin: x86_64-pc-linux-gnu-gcc-ranlib g++ cpp x86_64-pc-linux-gnu-gcc-nm gcov-tool gcc-nm gfortran x86_64-pc-linux-gnu-gcc-8.3.0 gcc-ar x86_64-pc-linux-gnu-c++ x86_64-pc-linux-gnu-gcc gcov-dump c++ gcc-ranlib gcov x86_64-pc-linux-gnu-gfortran gcc x86_64-pc-linux-gnu-g++ x86_64-pc-linux-gnu-gcc-ar /opt/esslurm/bin: sacct sacctmgr salloc sattach sbatch sbcast scancel scontrol sdiag sgather sinfo sprio squeue sreport srun sshare sstat strigger sview /opt/cray/pe/modules/3.2.11.4/bin: add.modules mkroot modulecmd /usr/common/software/bin: usgrsu list-ssh-certs wheres_my_job.py ftp prjdirs tape_stats stripe_large check-hybrid.cce.cmem check-hybrid.intel.cmem hpss_get_sorted_files.py~ hpss_target_directory_creation.py getnim dirquota meshcoords cmark-ivb lmstat fixdots2 check-hybrid.gnu.cmem take find_and_kill check-mpi.cce.cori bbcp mk_pip_cabundle.sh nids_to_ranges sw_support stripe_medium lspkg fix_perms gperf fix_usg check-mpi.cce.cmem burp dotmgr.test emptydots hpss_file_sorter.script check-mpi.intel.cori sqs1 prjbdirs linkinfo.sh stripe_medium.backup sqs2 hpssquota check-mpi.intel.cmem mods hpss_file_sorter.py o:q! check-hybrid.intel.cori findemptydirs sshproxy.sh check-mpi.gnu.cori sqs.old sqs stripe_large.backup jobstats cmnquota upinter check-mpi.pgi.cmem prjquota give pe_changes.py prjaquota sqs.new hpss_avail check_license.sh susw xcmap gen_nodelist.sh svnlook esl.sh fixdots home_over check-hybrid.gnu.cori hpss_file_sorter.py~ nc stripe_small.backup static_linking_ddt_md_th swcats nedit check-hybrid.cce.cori iris stripe_small dotmgr hold_prjquota home_usage mynersc_wrappers static_linking_ddt_md wheres_my_job.py.bak hpss_get_sorted_files.py module_restore.sh tape_order tedi ndots nersc_host cfsquota not_used run-and-watch.sh generate_sorted_list_for_hpss.py cmark check-mpi.gnu.cmem check-hybrid.pgi.cmem findtouch Warning accessing /usr/common/nsg/bin gives errors: [Errno 2] No such file or directory: '/usr/common/nsg/bin' /opt/ovis/bin: check_mmr_configurable envldms.sh ldms-csv-anonymize ldms-csv-export-sos ldms-l2_test.sh ldms-meminfo.sh ldms-pedigree ldms-plugins.sh ldms-py-rename.sh ldms-py-subset_test.sh ldms-py-syslog.sh ldms-py-varset.sh ldms-static-test.sh ldms_ban.sh ldms_dstat_schema_name ldms_local_opa2test.sh ldmsd-check-env ldmsd_controller lmq lsdate ods_dump ovis-roll-over.py sos-db sos-import-csv sos-monitor sos-part sos-schema sos_cmd sos_part_create sos_part_delete sos_part_export sos_part_index sos_part_modify sos_part_move sos_part_query /opt/ovis/sbin: .ldms-wrapper hello_cat_publisher hello_publisher ldms-aggd ldms_ls ldmsaggctl ldmsctl ldmsd ldmsd_sos_init ldmsd_stream_publish ldmsd_stream_subscribe ovis_json_test /usr/local/bin: cray-docker-auth cray-docker-storage-setup qaucli /usr/bin: .hmac256.hmac .hsi-4.0.1.3.exe .hsi-5.0.2.p12.exe .htar-4.0.1.3.exe .htar-5.0.2.p12.exe .pftp-client-7.3.exe .pftp-client-7.4.exe 411toppm BackGround Backarrow2BackSpace Backarrow2Delete DcgmProfTesterKernels.ptx Mail NIMUsageRelay Signature_conversion WebKitWebDriver X X11 Xdmx Xephyr Xnest Xorg Xvfb Xvnc [ a4toa5 aa-enabled aa-exec ab ab2 ac aclocal aclocal-1.15 aconnect acpi_validate acpibin acpiexamples acpiexec acpihelp acpinames acpisrc acpixtract activation-client addr2line affixcompress afs5log agent_cli agentxtrap all_notes_off allcm allec allneeded alsaloop alsamixer alsatplg alsaucm amidi amixer amuFormat.sh analyze animate annotate ansible ansible-doc ansible-galaxy ansible-playbook ansible-pull ansible-vault ant antRun antlr antlr-config anytopnm apache2-find-directives aplay aplaymidi appdata2solv applydeltaiso applydeltarpm apropos ar arch arecord arecordmidi aria_chk aria_dump_log aria_ftdump aria_pack aria_read_log arpaname as asciitopgm aseqdump aseqnet asn1Coding asn1Decoding asn1Parser at atktopbm atq atrm attr audit2allow audit2why auditparse aulast aulastlog ausyscall autoconf autoexpect autoheader autom4te automake automake-1.15 autopoint autoreconf autoscan autoupdate auvirt avstopam awk b2sum base32 base64 basename bashbug batch bbox bc bdftogd bdftruncate bgp_btoa bibtex binhex.pl bioradtopgm bison blkiomon blkrawverify bmptopnm bmptoppm bno_plot.py bonnie bonobo-activation-run-query bonobo-slay bootctl broadwayd brushtopbm btrecord btreplay btrfs-map-logical btt build-classpath build-classpath-directory build-jar-repository bunzip2 busctl busybox busybox.install bwrap bzcat bzcmp bzdiff bzegrep bzfgrep bzgrep bzip2 bzip2recover bzless bzmore bznew c++ c++filt c3270 c_rehash cal call-browser callgrind_annotate callgrind_control cameratopam cancel capinfos captoinfo captype card_eventmgr cardos-tool cat catatonit catchsegv catman cc ccmake ccmakedep certtool cg_annotate cg_diff cg_merge chacl chage chardetect chardetect-2.7 chardetect-3.6 chattr chcat chcon check-binary-files check_events check_forensic check_forensic2 checkmodule checkpolicy chfn chgrp chkconfig chkstat chmem chmod chmorph chooser chown chronyc chroot chrp-addnote chrt chsh chvt ci cifscreds cifsdd cifsiostat cistopbm cksum clamav-config clambc clamconf clamdscan clamdtop clamscan clean-binary-files cleanlinks clear clrunimap clubak clubak-3.6 cluset cluset-3.6 clush clush-3.6 clusterdb cmake cmp cmtime cmuwmtopbm cnf co col colcrt collabsu colrm column combinedeltarpm comm command-not-found compare compile_et composite comps2solv conjure convert convmv coredumpctl corelist cp cpack cpan cpio cpp cpp-7 cpupcstat cpupower crc32 create-jar-links createdb createrepo createrepo_yum createuser crontab cryptdir cryptoflex-tool csh csplit ctags ctags-exuberant ctest cups-config cupstestdsc cupstestppd curl curl-config cut cvs cvsbug cvslock cvt cygdb cygdb-3.6 cyrus_sasl_sample_client cyrus_sasl_sample_server cython cython-3.6 cythonize cythonize-3.6 danetool dapltest dasher date db48_archive db48_checkpoint db48_deadlock db48_dump db48_hotbackup db48_load db48_printlog db48_recover db48_sql db48_stat db48_upgrade db48_verify db_archive db_checkpoint db_deadlock db_dump db_hotbackup db_load db_printlog db_recover db_sql db_stat db_upgrade db_verify dbilogstrip dbiprof dbiproxy dbmmanage dbmmanage2 dbus-cleanup-sockets dbus-daemon dbus-launch dbus-launch.nox11 dbus-launch.x11 dbus-monitor dbus-run-session dbus-send dbus-test-tool dbus-update-activation-environment dbus-uuidgen dbwrap_tool dc dcgmi dcgmproftester10 dcgmproftester11 dcmipower.awk dconf dd dd_rescue ddbugtopbm deallocvt debinhex.pl decryptdir deltainfoxml2solv delv desktop-file-edit desktop-file-install desktop-file-validate desktop-launch devdump df dftest dialog diff diff-jars diff3 diffpp dig dimax_init dir dircolors dirmngr dirmngr-client dirmngr_ldap dirname disable-paste dislocate display display-buttons display-coords dkimsign.pl dkimverify.pl dltest dm_date dm_zdump dmesg dmxaddinput dmxaddscreen dmxinfo dmxreconfig dmxresize dmxrminput dmxrmscreen dmxtodmx dmxwininfo dnie-tool dnsdomainname docker docker-compose docker-init docker-proxy dockerd domainname dos2unix doxygen dracut driverless dropdb dropuser drpmsync dshbak dtest dtestcm dtestsrq dtestx du dump2psl.pl dump2slvl.pl dumpcap dumpkeys dumpsexp dumpsolv dvi2fax dviasm dvibook dviconcat dvidvi dvigif dvilualatex dviluatex dvipdf dvipng dvired dviselect dvisvgm dvitodvi dwp dwz easy_install easy_install-2.7 easy_install-3.6 ebrowse echo echo-client-2 ecpg ed edit edit-xml-catalog edit-xml-catalog.sh editcap egk-tool egrep egview egvim eidenv eject elfedit emacs emacs-gtk emacs-x11 emacsclient embedspu enc2xs encguess encode_keychange enscript enscript.bin env envsubst eog eps2eps epsffit eqn erb erb.ruby2.5 escp2topbm espeak etags etex eu-addr2line eu-ar eu-elfcmp eu-elfcompress eu-elflint eu-findtextrel eu-make-debug-archive eu-nm eu-objdump eu-ranlib eu-readelf eu-size eu-stack eu-strings eu-strip eu-unstrip event_rpcgen.py eventlogadm eview evim evince evince-previewer evince-thumbnailer evt2raw ex expand expect expiry expr extlinux extractres eyuvtoppm f2py f2py2 f2py2.7 f2py3 f2py3.6 factor fallocate false fastjar fc-cache fc-cache32 fc-cat fc-cat32 fc-list fc-list32 fc-match fc-match32 fc-pattern fc-query fc-scan fc-validate fdupes fetchmail fgconsole fgrep fiascotopnm file file-roller filesize fillup fincore find find-jar findmnt findsmb fips_standalone_hmac firewall-cmd firewall-offline-cmd firewallctl fitstopnm fixdlsrps fixfmps fixmacps fixproc fixpsditps fixpspps fixqt4headers.pl fixscribeps fixtpps fixwfwps fixwpps fixwwps fiz flask flask-2.7 flask-3.6 flex flex++ flint flint_ext flock fluent-binlog-reader fluent-binlog-reader-1.5.2 fluent-binlog-reader.ruby2.5 fluent-binlog-reader.ruby2.5-1.5.2 fluent-ca-generate fluent-ca-generate-1.5.2 fluent-ca-generate.ruby2.5 fluent-ca-generate.ruby2.5-1.5.2 fluent-cat fluent-cat-1.5.2 fluent-cat.ruby2.5 fluent-cat.ruby2.5-1.5.2 fluent-debug fluent-debug-1.5.2 fluent-debug.ruby2.5 fluent-debug.ruby2.5-1.5.2 fluent-gem fluent-gem-1.5.2 fluent-gem.ruby2.5 fluent-gem.ruby2.5-1.5.2 fluent-plugin-config-format fluent-plugin-config-format-1.5.2 fluent-plugin-config-format.ruby2.5 fluent-plugin-config-format.ruby2.5-1.5.2 fluent-plugin-generate fluent-plugin-generate-1.5.2 fluent-plugin-generate.ruby2.5 fluent-plugin-generate.ruby2.5-1.5.2 fluentd fluentd-1.5.2 fluentd.ruby2.5 fluentd.ruby2.5-1.5.2 fmt fmtutil fmtutil-sys fmtutil-user fold foomatic-rip formail fragiso free freetype-config freshclam fribidi fsfs-access-map fstopgm ftp ftp-rfc funzip funzip-plain fuser fusermount fwtrace g++ g++-7 g-ir-annotation-tool g-ir-compiler g-ir-doc-tool g-ir-generate g-ir-inspect g-ir-scanner g13 g2r gapplication gawk gcc gcc-7 gcc-ar gcc-ar-7 gcc-nm gcc-nm-7 gcc-ranlib gcc-ranlib-7 gccmakedep gconf-editor gconf-merge-tree gconftool-2 gconftool-rebuild gcore gcov gcov-7 gcov-dump gcov-dump-7 gcov-tool gcov-tool-7 gd2copypal gd2togif gd2topng gdb gdb-add-index gdbm_dump gdbm_load gdbmtool gdbserver gdbus gdbus-codegen gdcmpgif gdialog gdk-pixbuf-csource gdk-pixbuf-pixdata gdk-pixbuf-query-loaders-64 gdm gdm-screenshot gdmflexiserver gdparttopng gdtopng gedi gedit gem gem.ruby2.5 gem2rpm gem2rpm-0.10.1 gem2rpm.ruby2.5 gem2rpm.ruby2.5-0.10.1 gemtopbm gemtopnm genDDNSkey gencat gendiff genscript gensslcert geqn get-versions get_kernel_version getafm getcifsacl getconf getdelays getent getfacl getfattr gethostip getkeycodes getopt gettext gettext.sh gettextize getunimap gex gids-tool giftogd2 giftopnm gio gio-querymodules-64 git git-lfs git-new-workdir git-receive-pack git-shell git-upload-archive git-upload-pack gkbd-keyboard-display glib-compile-resources glib-compile-schemas glib-genmarshal glib-gettextize glib-mkenums globus-domainname globus-gass-cache globus-gass-cache-destroy globus-gass-cache-util globus-hostname globus-job-cancel globus-job-clean globus-job-get-output globus-job-get-output-helper globus-job-run globus-job-status globus-job-submit globus-personal-gatekeeper globus-sh-exec globus-url-copy globus-version globusrun gmake gnome gnome-control-center gnome-help gnome-keyring gnome-keyring-3 gnome-keyring-daemon gnome-open gnome-session gnome-session-inhibit gnome-session-quit gnome-shell gnome-shell-extension-prefs gnome-terminal gnome-text-editor gnomesu gnomevfs-cat gnomevfs-copy gnomevfs-df gnomevfs-info gnomevfs-ls gnomevfs-mkdir gnomevfs-monitor gnomevfs-mv gnomevfs-rm gnuctags gnuplot gnutls-cli gnutls-cli-debug gnutls-serv gobject-query gouldtoppm gpasswd gpg gpg-agent gpg-connect-agent gpg-error gpg-error-config gpg-wks-server gpg-zip gpg2 gpgconf gpgme-tool gpgparsemail gpgrt-config gpgscm gpgsm gpgtar gpgv gpgv2 gpm-root gprof grep grepjar gresource grid-cert-diagnostics grid-cert-info grid-cert-request grid-change-pass-phrase grid-proxy-destroy grid-proxy-info grid-proxy-init groff grog grops grotty groups grub2-editenv grub2-emu grub2-emu-lite grub2-file grub2-fstest grub2-glue-efi grub2-kbdcomp grub2-menulst2cfg grub2-mkfont grub2-mkimage grub2-mklayout grub2-mknetdir grub2-mkpasswd-pbkdf2 grub2-mkrelpath grub2-mkrescue grub2-mkstandalone grub2-mount grub2-render-label grub2-script-check grub2-syslinux2cfg gs gsbj gsdj gsdj500 gsettings gsettings-data-convert gsftopk gslj gslp gsnd gst-device-monitor-1.0 gst-discoverer-1.0 gst-play-1.0 gstack gtbl gtester gtester-report gtf gtk-builder-convert gtk-builder-tool gtk-demo gtk-encode-symbolic-svg gtk-launch gtk-query-immodules-2.0-64 gtk-query-immodules-3.0-64 gtk-query-settings gtk-update-icon-cache gtk-update-icon-cache-2.0 gtk-update-icon-cache-3.0 gtk3-demo gtk3-demo-application gtk3-icon-browser gtk3-widget-factory guess_encoding guild guile guile-tools gunicorn gunicorn-2.7 gunicorn-3.6 gunicorn_paster gunicorn_paster-2.7 gunicorn_paster-3.6 gunzip gv gv-update-userconfig gvfs-cat gvfs-copy gvfs-info gvfs-less gvfs-ls gvfs-mime gvfs-mkdir gvfs-monitor-dir gvfs-monitor-file gvfs-mount gvfs-move gvfs-open gvfs-rename gvfs-rm gvfs-save gvfs-set-attribute gvfs-trash gvfs-tree gvi gview gvim gvimdiff gvimtutor gzexe gzip h2ph h2xs hardlink hattrib hca_self_test.ofed hcd hcopy hdel hdifftopam hdir hdisk.pl head hexdump hformat hipstopgm hls hltest hmac256 hmkdir hmount host hostid hostname hostnamectl hpwd hrename hrmdir hsi htar htdbm htdbm2 htdigest htdigest2 htpasswd htpasswd2 httxt2dbm hugeadm hugectl hugeedit humount hunspell hunzip hvol hwloc-annotate hwloc-assembler hwloc-assembler-remote hwloc-bind hwloc-calc hwloc-compress-dir hwloc-diff hwloc-distances hwloc-distrib hwloc-gather-topology hwloc-info hwloc-ls hwloc-patch hwloc-ps hzip i2c i386 iasecc-tool iasl ib_acme ib_atomic_bw ib_atomic_lat ib_read_bw ib_read_lat ib_send_bw ib_send_lat ib_write_bw ib_write_lat ibcongest ibdev2netdev ibdiagm.sh ibdiagnet ibdiagnet_csv2xml.py ibdiagpath ibdmchk ibdmtr ibgenperm ibnetsplit ibnlparse ibtopodiff ibv_asyncwatch ibv_devices ibv_devinfo ibv_rc_pingpong ibv_srq_pingpong ibv_uc_pingpong ibv_ud_pingpong ibv_xsrq_pingpong iceauth icesh icesh-lite icewm icewm-lite icewm-session icewm-session-lite icewmbg icewmbg-lite icewmhint icewmhint-lite icontopbm iconv icu-config id ident identify idl2wrs iecset ifconfig ifnames ilbmtoppm imake imgtoppm import includeres info infocmp infotocap infotopam initdb initex initviocons innochecksum install install-catalog install-catalog.sh install-dtd.sh install-info installation_sources installcheck instmodsh iokit-config iokit-gather-stats iokit-libecho iokit-lstats iokit-parse-ior iokit-plot-obdfilter iokit-plot-ost iokit-plot-sgpdd ionice ior-survey iostat iowatcher ipcmk ipcount ipcrm ipcs ipf-mod.pl ipmitool ipmitool.awk ippfind ipptool iptab iptables-xml irb irb.ruby2.5 isodebug isodump isohybrid isohybrid.pl isoinfo isolinux-config isosize isovfy ispellaff2myspell isql itox itrace iusql jaotc jar jarsigner java javac javadoc javap jbigtopnm jcmd jconsole jdb jdeprscan jdeps jhsdb jimage jinfo jjs jlink jmacs jmap jmod joe join journalctl jpeg2ktopam jpegtopnm jpico jps jq jrunscript jshell json_pp jsonschema jsonschema-2.7 jsonschema-3.6 jstack jstar jstat jstatd kbd kbd_mode kbdinfo kbdrate kbxutil kdumpid kernel-install keyctl keygen keytab-lilo keytool kibitz kill killall kinit klist kmod kmp-install koi8rxterm kpseaccess kpsepath kpsereadlink kpsestat kpsetool kpsewhere kpsewhich kpsexpand ksh lacheck last lastb lastcomm lastlog latex ld ld.bfd ldapadd ldapcompare ldapdelete ldapexop ldapmodify ldapmodrdn ldappasswd ldapsearch ldapurl ldapwhoami ldd leaftoppm less lessclose.sh lessecho lesskey lessopen.sh lex lexgrog lfs lfs_migrate lftp lftp_wrapper lftpget libgcrypt-config libnetcfg libpng-config libpng16-config libtool libtoolize linc-cleanup-sockets line link linux32 linux64 lispmtopgm lksh llobdstat llstat ln lndir lnstat loadkeys loadunimap locale localectl localedef locate lockfile log_server_status log_server_status2 logger loginctl logname lognormalizer logresolve logresolve2 look lp lpoptions lpq lpr lprm lprsetup.sh lpstat lpunlock ls lsar lsattr lsb-release lsb_release lsblk lscpu lsdev lsinitrd lsipc lslocks lslogins lsmem lsmod lsns lsof lss16toppm lsscsi lstopo lstopo-no-graphics lsusb lsusb.py ltrace lua lua5.3 luac luac5.3 luajittex lualatex luaotfload-tool luatex luit luitx lustre_exporter lwp-download lwp-dump lwp-mirror lwp-request lz lz4 lz4c lz4cat lzcat lzcmp lzdiff lzegrep lzfgrep lzgrep lzless lzma lzmadec lzmainfo lzmore m17n-db m4 mac2unix macptopbm magick magick-script mail mailq mailstat mailx make make_method makealias makedeltaiso makedeltarpm makedepend makedumpfile makedumpfile-R.pl makeg makeindex makeinfo man mandb manpath manweb mapscrn mariabackup mariadb-service-convert mariadb_config mattrib mbadblocks mbstream mcat mcd mcheck mckey mclasserase mcomp mcookie mcopy mcra md5pass md5sum mdatopbm mdel mdeltree mdevices_info mdig mdir mds-survey mdu memdiskfind memhog memkind-hbw-nodes merge merge-pciids mergecap mergelib mergerepo mergerepo_yum mergesolv mesg mev mformat mft_uninstall.sh mget_temp mget_temp_ext mgrtopbm migratepages migspeed minfo minit mk_cmds mkafmmap mkdir mkdirhier mkdiskimage mkfifo mkfontdir mkfontscale mkhpsstok.pl mkhtmlindex mkhybrid mkindex mkinfodir mkisofs mkmanifest mknod mkocp mkofm mkpasswd mksh mksquashfs mktemp mktexfmt mktexlsr mktexmf mktexpk mktextfm mkzftree mkzimage_cmdline mlabel mlnx_dump_parser mlnx_get_vfs.pl mlnx_perf mlnx_qcn mlnx_qos mlx_fpga mlx_fpga_ext mlx_fs_dump mlxburn mlxcables mlxcables_ext mlxconfig mlxdump mlxdump_ext mlxfwmanager mlxfwreset mlxgearbox mlxi2c mlxlink mlxlink_ext mlxmcg mlxmdio mlxpci mlxphyburn mlxprivhost mlxreg mlxreg_ext mlxtrace mlxtrace_ext mlxuptime mlxvpd mmd mmount mmove mmroff moc-qt5 modhash modifyrepo modifyrepo_yum modsign-verify mof_compiler mof_compiler-2.7 mogrify mongo montage more mount mountpoint mouse-test mpartition mpi-selector mpi-selector-menu mpicalc mpstat mrd mremote mren mrftopbm ms_print msgattrib msgcat msgcmp msgcomm msgconv msgen msgexec msgfilter msgfmt msggrep msginit msgmerge msgunfmt msguniq mshortname mshowfat msql2mysql mst mst_cable mst_ib_add mstconfig mstcongestion mstdump mstflint mstfwreset mstfwtrace mstmcra mstmread mstmtserver mstmwrite mstop mstprivhost mstregdump mstvpd mtools mtoolstest mtserver mtvtoppm mtype multixterm munch munge mutt mutter mv mvxattr mxtar my_print_defaults mydvichk myisam_ftdump myisamchk myisamlog myisampack myproxy-change-pass-phrase myproxy-destroy myproxy-get-delegation myproxy-get-trustroots myproxy-info myproxy-init myproxy-logon myproxy-retrieve myproxy-store myquota myrocks_hotbackup mysql mysql_config mysql_convert_table_format mysql_embedded mysql_find_rows mysql_fix_extensions mysql_install_db mysql_ldb mysql_plugin mysql_secure_installation mysql_setpermission mysql_tzinfo_to_sql mysql_upgrade mysqlaccess mysqladmin mysqlanalyze mysqlbinlog mysqlcheck mysqld_multi mysqld_safe mysqld_safe_helper mysqldump mysqldumpslow mysqlhotcopy mysqlimport mysqloptimize mysqlrepair mysqlshow mzip namei nc ncurses6-config ncursesw6-config neotoppm neqn net net-server net-snmp-cert net-snmp-config net-snmp-create-v3-user netaddr-2.7 netcat netkey-tool netstat networkctl newaliases newgidmap newgrp newuidmap ngettext nice nisdomainname nl nm nmap nmblookup nmbstatus node_exporter nodeset nodeset-3.6 nohup notify-send npa-tool nproc nroff nsenter nslookup nstat nsupdate ntlm_auth numactl numademo numastat numfmt nv-fabricmanager nv-hostengine nvidia-bug-report.sh nvidia-cuda-mps-control nvidia-cuda-mps-server nvidia-debugdump nvidia-modprobe nvidia-persistenced nvidia-settings nvidia-smi nvidia-xconfig nvidia_gpu_exporter nvswitch-audit oLschema2ldif obdfilter-survey objcopy objdump oci-image-tool ocount ocsptool od odbc_config odbcinst odd2even ofed_info ofed_rpm_info ofl oid2name old omshell op-check-perfevents opannotate oparchive openpgp-tool opensc-asn1 opensc-explorer opensc-notify opensc-tool openssl openvt operf opgprof ophelp opimport opjitconv opreport oprofile_map_events.pl oprofile_start.sh ost-survey outpsfheader over p11-kit p11tool pack200 pagesize palmtopnm pamaddnoise pamarith pambackground pambayer pamchannel pamcomp pamcrater pamcut pamdeinterlace pamdepth pamdice pamditherbw pamedge pamendian pamenlarge pamexec pamfile pamfix pamfixtrunc pamflip pamfunc pamgauss pamgradient pamlookup pammasksharpen pammixinterlace pammosaicknit pamoil pampaintspill pamperspective pampick pampop9 pamrecolor pamrgbatopng pamrubber pamscale pamseq pamshadedrelief pamsharpmap pamsharpness pamsistoaglyph pamslice pamsplit pamstack pamstereogram pamstretch pamstretch-gen pamsumm pamsummcol pamtable pamthreshold pamtilt pamtoavs pamtodjvurle pamtofits pamtogif pamtohdiff pamtohtmltbl pamtojpeg2k pamtompfont pamtooctaveimg pamtopam pamtopdbimg pamtopfm pamtopng pamtopnm pamtosrf pamtosvg pamtotga pamtotiff pamtouil pamtowinicon pamtoxvmini pamundice pamunlookup pamvalidate pamwipeout pamx parse-sgml-catalog.sh passmass passwd paste patch pathchk pax pbmclean pbmlife pbmmake pbmmask pbmminkowski pbmpage pbmpscale pbmreduce pbmtext pbmtextps pbmto10x pbmto4425 pbmtoascii pbmtoatk pbmtobbnbg pbmtocis pbmtocmuwm pbmtodjvurle pbmtoepsi pbmtoepson pbmtoescp2 pbmtog3 pbmtogem pbmtogo pbmtoibm23xx pbmtoicon pbmtolj pbmtoln03 pbmtolps pbmtomacp pbmtomatrixorbital pbmtomda pbmtomgr pbmtomrf pbmtonokia pbmtopgm pbmtopi3 pbmtopk pbmtoplot pbmtoppa pbmtopsg3 pbmtoptx pbmtosunicon pbmtowbmp pbmtox10bm pbmtoxbm pbmtoybm pbmtozinc pbmupc pc1toppm pckt_drop pcre-config pcre2-config pcregrep pcretest pcxtoppm pdbedit pdbimgtopam pdcp pdf2dsc pdf2ps pdfdetach pdfetex pdffonts pdfimages pdfinfo pdflatex pdfseparate pdfsig pdftex pdftexi2dvi pdftocairo pdftohtml pdftoppm pdftops pdftotext pdfunite pdksh pdsh peekfd perl perl5.26.1 perlbug perldoc perlivp perlthanks perror pf2afm pfbtopfa pfmtopam pftp pg_archivecleanup pg_basebackup pg_config pg_controldata pg_ctl pg_dump pg_dumpall pg_isready pg_receivewal pg_recvlogical pg_resetwal pg_restore pg_rewind pg_standby pg_test_fsync pg_test_timing pg_upgrade pg_waldump pgbench pgmabel pgmbentley pgmcrater pgmdeshadow pgmedge pgmenhance pgmhist pgmkernel pgmmake pgmmedian pgmminkowski pgmmorphconv pgmnoise pgmnorm pgmoil pgmramp pgmslice pgmtexture pgmtofs pgmtolispm pgmtopbm pgmtopgm pgmtoppm pgmtosbig pgmtost4 pgpewrap pgpring pgrep pi1toppm pi3topbm pic piconv pidstat pigz pinentry pinentry-curses pinentry-tty ping ping6 pinky pirb pirb-1.0.3 pirb.ruby2.5 pirb.ruby2.5-1.0.3 piv-tool pjtoppm pkaction pkcheck pkcs11-tool pkcs11_eventmgr pkcs11_inspect pkcs11_listcerts pkcs11_make_hash_link pkcs11_setup pkcs15-crypt pkcs15-init pkcs15-tool pkexec pkg-config pki pkill pklogin_finder pktopbm pkttyagent pl2pm plot-llstat pmap pngtogd pngtogd2 pngtopam pngtopnm pnmalias pnmarith pnmcat pnmcolormap pnmcomp pnmconvol pnmcrop pnmcut pnmdepth pnmenlarge pnmfile pnmflip pnmgamma pnmhisteq pnmhistmap pnmindex pnminterp pnminvert pnmmargin pnmmercator pnmmontage pnmnlfilt pnmnoraw pnmnorm pnmpad pnmpaste pnmpsnr pnmquant pnmquantall pnmremap pnmrotate pnmscale pnmscalefixed pnmshear pnmsmooth pnmsplit pnmstitch pnmtile pnmtoddif pnmtofiasco pnmtofits pnmtojbig pnmtojpeg pnmtopalm pnmtopclxl pnmtoplainpnm pnmtopng pnmtopnm pnmtops pnmtorast pnmtorle pnmtosgi pnmtosir pnmtotiff pnmtotiffcmyk pnmtoxwd pod2html pod2man pod2texi pod2text pod2usage pod_cover podchecker podselect postgres postmaster pphs ppm3d ppmbrighten ppmchange ppmcie ppmcolormask ppmcolors ppmdcfont ppmddumpfont ppmdim ppmdist ppmdither ppmdmkfont ppmdraw ppmfade ppmflash ppmforge ppmglobe ppmhist ppmlabel ppmmake ppmmix ppmnorm ppmntsc ppmpat ppmquant ppmquantall ppmrainbow ppmrelief ppmrough ppmshadow ppmshift ppmspread ppmtoacad ppmtoapplevol ppmtoarbtxt ppmtoascii ppmtobmp ppmtoeyuv ppmtogif ppmtoicr ppmtoilbm ppmtojpeg ppmtoleaf ppmtolj ppmtolss16 ppmtomap ppmtomitsu ppmtoneo ppmtopcx ppmtopgm ppmtopi1 ppmtopict ppmtopj ppmtopjxl ppmtoppm ppmtopuzz ppmtorgb3 ppmtosixel ppmtospu ppmtoterm ppmtotga ppmtouil ppmtowinicon ppmtoxpm ppmtoyuv ppmtoyuvsplit ppmtv ppmwheel pr pr3287 prctl preconv printafm printenv printf prjaquota prjquota prlimit procinfo procmail profiles protoc prove prtstat pruby pruby-1.0.3 pruby.ruby2.5 pruby.ruby2.5-1.0.3 ps ps2ascii ps2eps ps2epsi ps2frag ps2pdf ps2pdf12 ps2pdf13 ps2pdf14 ps2pdfwr ps2ps ps2ps2 psbook psfaddtable psfgettable psfstriptable psfxtable psidtopgm psktool pslatex pslog psmerge psnup psql psresize psselect pstops pstree pstree.x11 pt-tls-client ptar ptardiff ptargrep ptked ptksh ptx purge pwd pwdx pxelinux-options pybabel pybabel-2.7 pybabel-3.6 pydoc pydoc3 pydoc3.6 python python-config python2 python2-config python2.7 python2.7-config python3 python3-config python3.6 python3.6-config python3.6m python3.6m-config pyvenv pyvenv-3.6 pywbemcli pywbemcli-2.7 qlalr qmake-qt5 qperf qrttoppm quota quotasync rake rake.ruby.ruby2.5 rake.ruby2.5 randpkt ranlib rasttopnm raw_ethernet_burst_lat raw_ethernet_bw raw_ethernet_fs_rate raw_ethernet_lat rawshark rawtopgm rawtoppm rbash rcc-qt5 rcopy rcs rcs2log rcsclean rcsdiff rcsmerge rdma_client rdma_server rdma_xclient rdma_xserver rdoc rdoc.ruby.ruby2.5 rdoc.ruby2.5 re2c readelf readlink realpath rebuild-jar-repository recode-sr-latin red redis-benchmark redis-check-aof redis-check-rdb redis-cli redis-trib.rb regdiff regpatch regshell regtree reindexdb remunge rename renice reordercap replace repo2solv repo2solv.sh repomdxml2solv rescan-scsi-bus.sh reset resize resizecons resolve_stack_dump resolveip resourcedump rev revpath rftp rgb3toppm rgview rgvim ri ri.ruby.ruby2.5 ri.ruby2.5 riostream rjoe rlatopam rletopnm rlog rlogin-cwd rm rmdir rmic rmid rmiregistry route routef routel rpcclient rpcgen rpdcp rping rpm rpm2cpio rpmbuild rpmdb rpmdb2solv rpmgraph rpmkeys rpmlocate rpmmd2solv rpmqpack rpmquery rpms2solv rpmsign rpmspec rpmverify rrdcgi rrdcreate rrdinfo rrdtool rrdupdate rstream rsync rsyncstats ruby ruby-find-versioned ruby.ruby2.5 run_perftest_loopback run_perftest_multi_devices runcon rview rvim rxe_cfg s3270 sa-awl sa-check_spamd sa-compile sa-learn sa-update sacct sacctmgr sadf safe-rm safe-rmdir salloc samba-regedit samba-tool sandbox sar sattach sbatch sbcast sbigtopgm sc-hsm-tool scancel scdaemon scons scons-3.0.1 scons-configure-cache scons-configure-cache-3.0.1 scons-time scons-time-3.0.1 sconsign sconsign-3.0.1 scontrol scout scp screen screendump script scriptreplay scsi_logging_level scsi_mandat scsi_readcap scsi_ready scsi_satl scsi_start scsi_stop scsi_temperature sdiag sdiff secon secure-forward-ca-generate secure-forward-ca-generate-0.4.5 secure-forward-ca-generate.ruby2.5 secure-forward-ca-generate.ruby2.5-0.4.5 sed sedismod sedispol semodule_deps semodule_expand semodule_link semodule_package semodule_unpackage sensors sensors-conf-convert sepolgen-ifgen sepolgen-ifgen-attr-helper sepolicy seq serialver sessreg set_default_volume setarch setcifsacl setfacl setfattr setfont setkeycodes setleds setlogcons setmetamode setpalette setpriv setserial setsid setterm setvesablank setvtrgb setxkbmap sftp sg sg_bg_ctl sg_compare_and_write sg_copy_results sg_dd sg_decode_sense sg_emc_trespass sg_format sg_get_config sg_get_lba_status sg_ident sg_inq sg_logs sg_luns sg_map sg_map26 sg_modes sg_opcodes sg_persist sg_prevent sg_raw sg_rbuf sg_rdac sg_read sg_read_attr sg_read_block_limits sg_read_buffer sg_read_long sg_readcap sg_reassign sg_referrals sg_rep_zones sg_requests sg_reset sg_reset_wp sg_rmsn sg_rtpg sg_safte sg_sanitize sg_sat_identify sg_sat_phy_event sg_sat_read_gplog sg_sat_set_features sg_scan sg_seek sg_senddiag sg_ses sg_ses_microcode sg_start sg_stpg sg_stream_ctl sg_sync sg_test_rwbuf sg_timestamp sg_turs sg_unmap sg_verify sg_vpd sg_wr_mode sg_write_buffer sg_write_long sg_write_same sg_write_verify sg_write_x sg_xcopy sg_zone sgather sginfo sgitopnm sgm_dd sgml-register-catalog sgml2xmlcat.sh sgmlcat2x.sh sgp_dd sgpdd-survey sgqlc-codegen sh sha1pass sha1sum sha224sum sha256sum sha384sum sha512sum shade-jar shar sharesec sharkd shasum shifter shifterimg showchar showconsolefont showevtinfo showkey showrgb shred shuf sigtool simpdftex sinfo sirtopnm size skill skopeo slabtop sldtoppm sleep slencheck sliceprint slptool slurm_exporter smbcacls smbclient smbcontrol smbcquotas smbget smbinfo smbpasswd smbprngenpdf smbspool smbstatus smbtar smbtree smicache smidiff smidump smilint smime_keys smiquery smistrip smixlate smoketest smtpd.py snice snmp-bridge-mib snmpbulkget snmpbulkwalk snmpcheck snmpconf snmpdelta snmpdf snmpget snmpgetnext snmpinform snmpkey snmpnetstat snmpset snmpstatus snmptable snmptest snmptls snmptranslate snmptrap snmpusm snmpvacm snmpwalk socklist sockperf soelim sort spamassassin spamc spawn_console spawn_login spax spctoppm speaker-test splain split split-logfile split-logfile2 spottopgm sprio sprof sputoppm sqlite3 sqlite3_analyzer squeue squidclient sreport srftopam srptool srun ss ssh ssh-add ssh-agent ssh-copy-id ssh-keygen ssh-keyscan sshare sss_ssh_authorizedkeys sss_ssh_knownhostsproxy sst_dump sstat st4topgm stap stap-merge stap-report stapbpf staprun stapsh star startx stat states stdbuf stdlogctl strace strace-graph strace-log-merge stream strigger strings strip stty su sudo sudoedit sudoreplay sudosh sudosh-replay sum sunicontopnm suse-update-mime-defaults susetags2solv svgtopam sview svn svn-bench svn-populate-node-origins-index svn_apply_autoprops.py svnadmin svnauthz svnauthz-validate svnbench svndiff svndumpfilter svnfsfs svngrep svnlook svnmucc svnraisetreeconflict svnrdump svnserve svnsync svnversion swig sync syncqt.pl syslinux syslinux-mtools syslinux2ansi systemctl systemd-analyze systemd-ask-password systemd-cat systemd-cgls systemd-cgtop systemd-delta systemd-detect-virt systemd-escape systemd-firstboot systemd-hwdb systemd-inhibit systemd-machine-id-setup systemd-mount systemd-notify systemd-path systemd-run systemd-socket-activate systemd-stdio-bridge systemd-sysusers systemd-tmpfiles systemd-tty-ask-password-agent systemd-umount systool tabs tac tack tail tapestat tar targetcli targetcli-3.6 targetctl targetctl-3.6 tartest taskset tbl tc_wrap.py tcl3270 tclsh tclsh8.6 tcsh tee telnet termprobes test test_igmpv3_join testparm testsaslauthd testsolv tethereal tex texconfig texconfig-dialog texconfig-sys texhash texi2any texi2dvi texi2pdf texindex texlinks texlua texluac texluajit texluajitc text2pcap tftp tgatoppm tgz thinkjettopbm thumbpdf tic tidy_changelog tifftopnm time timed-read timed-run timedatectl timeout tkcon tkjpeg tkmib tknewsbiff tload tmux toe top touch tpm_sealdata tpm_unsealdata tput tr tracepath tracepath6 traptoemail tree troff true truncate trust tset tshark tsort tty turbostat tzselect ucmatose ucs2any ucx_info ucx_perftest ucx_read_profile udaddy udevadm udpong uic-qt5 uil ul ulockmgr_server umoci umount uname uname26 unar unbuffer uncompress unexpand unicode_start unicode_stop uniq unix-lpr.sh unix2dos unix2mac unlink unlz4 unlzma unmunch unmunge unpack200 unpigz unrar unrar_wrapper unshar unshare unsquashfs unxz unzip unzip-plain unzipsfx unzipsfx-plain update-desktop-database update-mime-database update-xml-catalog updatedb updateinfoxml2solv updmap updmap-sys updmap-user uptime urlgrabber usb-devices usbhid-dump users ustar utmpdump uudecode uuencode uuidgen uuidparse uxterm uz vacuumdb vacuumlo valgrind valgrind-di-server valgrind-listener vdir vdltodmx vdpauinfo verify_blkparse vgdb vi view vim vim-nox11 vimdiff vimtutor vitmp vkcube vkcubepp vlock vma_stats vmstat vncconfig vncpasswd vncpasswd.arg vncserver vttest vtysh vulkaninfo w w3m w3mman wall watch watchgnupg wayland-scanner wbemcli.py wbemcli.py-2.7 wbinfo wbmptopbm wc wdctl webpng westcos-tool wget whatis whereis which who whoami whois widget winicontopam winicontoppm wish wish8.6 wmidump wmixtract wordforms wordlist2hunspell wqdump wqdump_ext write wsdump.py wsdump.py-2.7 x026 x0vncserver x3270 x3270if x86_64 x86_64-suse-linux-gnu-pkg-config x86_energy_perf_policy xargs xauth xbmtopbm xconsole xconv.pl xdg-desktop-icon xdg-desktop-menu xdg-email xdg-icon-resource xdg-mime xdg-open xdg-screensaver xdg-settings xdg-su xdg-terminal xdg_menu xdg_menu_su xdm xdmxconfig xf86debug xgettext xhost ximtoppm xinit xkbcomp xkibitz xli xlito xloadimage xmessage xmkmf xml2-config xml_grep xml_merge xml_pp xml_spellcheck xml_split xmlcatalog xmllint xmlwf xmodmap xorg-backtrace xpath xpmtoppm xprop xpstat xrdb xscreensaver xscreensaver-command xscreensaver-demo xscreensaver-gl-helper xset xsetbg xsetroot xslt-config xsltproc xsubpp xterm xtermset xview xvminitoppm xwdtopnm xxd xz xzcat xzcmp xzdec xzdiff xzegrep xzfgrep xzgrep xzless xzmore xznew yacc yat2m ybmtopbm yelp yes ypcat ypchfn ypchsh ypdomainname ypmatch yppasswd ypwhich yuvsplittoppm yuvtoppm yuy2topam yzpper zcat zcmp zdiff zegrep zeisstopnm zenity zfgrep zforce zgrep zip zipcloak zipdetails zipgrep zipgrep-plain zipinfo zipnote zipsplit zless zmore znew zoo zsh zypp-CheckAccessDeleted zypp-NameReqPrv zypper /bin: arch awk basename bash blkparse blktrace btrace cat chgrp chmod chown chvt clrunimap cp cpio cray csh date dbus-cleanup-sockets dbus-daemon dbus-monitor dbus-send dbus-test-tool dbus-update-activation-environment dbus-uuidgen dd dd_rescue deallocvt df dmesg dnsdomainname domainname dumpkeys echo ed egrep ex false fgconsole fgrep fillup find findmnt fsync fuser gawk getkeycodes getunimap grep guess_encoding gunzip gzip hostname ifconfig initviocons ip kbd_mode kbdinfo kbdrate keyctl kill ksh lksh ln loadkeys loadunimap logger login ls lsblk lsmod mail mapscrn md5sum mkdir mknod mksh mktemp mlnx_conf_mgr.sh mlnx_interface_mgr.sh more mount mv netstat nisdomainname openvt outpsfheader pdksh pgrep pidof ping ping6 pkill ps psfaddtable psfgettable psfstriptable psfxtable pwd readlink resizecons rm rmdir route rpm screendump sed setfont setkeycodes setleds setlogcons setmetamode setpalette setvesablank setvtrgb sh showconsolefont showkey sleep sort spawn_console spawn_login stat stty su sync systemctl systemd systemd-ask-password tar tcsh touch tracepath tracepath6 true umount uname unicode_start unicode_stop usleep vi vim ypdomainname zcat zsh /usr/lib/mit/bin: gss-client k5srvutil kadmin kdestroy kinit klist kpasswd krb5-config ksu kswitch ktutil kvno sclient sim_client uuclient /usr/lib/mit/sbin: krb5-send-pr /opt/cray/pe/bin: csmlversion pe_cleanup_callback.sh pe_postmount_callback.sh pe_setup_callback.sh set-gcc-libs set_default set_default_master setup_shell_rcs.sh ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:988) child config.utilities.macosFirewall 0.000004 ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Linux Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/gdb...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/gdb...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/gdb...not found Checking for program /opt/cray/alps/default/bin/gdb...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/gdb...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/gdb...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/gdb...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/gdb...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/gdb...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/gdb...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/gdb...not found Checking for program /opt/esslurm/bin/gdb...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/gdb...not found Checking for program /usr/common/software/bin/gdb...not found Checking for program /usr/common/nsg/bin/gdb...not found Checking for program /opt/ovis/bin/gdb...not found Checking for program /opt/ovis/sbin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Executing: uname -s stdout: Linux child config.utilities.debuggers 0.052924 ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 15 #define PETSC_VERSION_SUBMINOR 0 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.002845 ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000535 ============================================================================================= TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/git...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/git...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/git...not found Checking for program /opt/cray/alps/default/bin/git...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/git...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/git...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/git...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/git...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/git...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/git...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/git...not found Checking for program /opt/esslurm/bin/git...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/git...not found Checking for program /usr/common/software/bin/git...not found Checking for program /usr/common/nsg/bin/git...not found Checking for program /opt/ovis/bin/git...not found Checking for program /opt/ovis/sbin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.16.4 ============================================================================================= TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/hg...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/hg...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/hg...not found Checking for program /opt/cray/alps/default/bin/hg...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/hg...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/hg...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/hg...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/hg...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/hg...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/hg...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/hg...not found Checking for program /opt/esslurm/bin/hg...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/hg...not found Checking for program /usr/common/software/bin/hg...not found Checking for program /usr/common/nsg/bin/hg...not found Checking for program /opt/ovis/bin/hg...not found Checking for program /opt/ovis/sbin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/lib/mit/bin/hg...not found Checking for program /usr/lib/mit/sbin/hg...not found Checking for program /opt/cray/pe/bin/hg...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/hg...not found child config.sourceControl 0.020789 ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.15.0-501-ge792467277 Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: e79246727751d5282d60d3b5c33b013f495bca66 Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2021-05-15 12:22:00 -0700 Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD'] stdout: adams/cusparse-cpu-solve Defined "VERSION_GIT" to ""v3.15.0-501-ge792467277"" Defined "VERSION_DATE_GIT" to ""2021-05-15 12:22:00 -0700"" Defined "VERSION_BRANCH_GIT" to ""adams/cusparse-cpu-solve"" child PETSc.options.petscclone 0.111262 ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set ============================================================================================= Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-cori-gpu-opt-kokkos-gcc, ignoring environment: arch-cori-cuda11-opt-gcc ============================================================================================= No previous hashfile found Setting hashfile: arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/configure-hash Deleting configure hash file: arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/configure-hash child PETSc.options.arch 0.025649 ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:39) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:85) ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:78) ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:62) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:98) child PETSc.options.installDir 0.001563 ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000524 ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.000778 ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1973) ============================================================================================= ***** WARNING: CC (set to /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/nvc) found in environment variables - ignoring use ./configure CC=$CC if you really want to use that value ****** ============================================================================================= ============================================================================================= ***** WARNING: CXX (set to /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/nvc++) found in environment variables - ignoring use ./configure CXX=$CXX if you really want to use that value ****** ============================================================================================= ============================================================================================= ***** WARNING: FC (set to /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/nvfortran) found in environment variables - ignoring use ./configure FC=$FC if you really want to use that value ****** ============================================================================================= ============================================================================================= ***** WARNING: F77 (set to /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/nvfortran) found in environment variables - ignoring use ./configure F77=$F77 if you really want to use that value ****** ============================================================================================= ============================================================================================= ***** WARNING: F90 (set to /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/nvfortran) found in environment variables - ignoring use ./configure F90=$F90 if you really want to use that value ****** ============================================================================================= ============================================================================================= ***** WARNING: CPP (set to cpp) found in environment variables - ignoring use ./configure CPP=$CPP if you really want to use that value ****** ============================================================================================= ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:2003) ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1943) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1964) OpenMPI wrappers require LD_LIBRARY_PATH set Adding to LD_LIBRARY_PATH /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:542) Initialize the compiler and linker flags Initialized CFLAGS to -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Initialized CFLAGS to -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Initialized LDFLAGS to Initialized CUDAFLAGS to -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Initialized CUDAFLAGS to -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Initialized LDFLAGS to Initialized HIPFLAGS to Initialized HIPFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to -g Initialized FFLAGS to -g Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to -Wno-deprecated-gpu-targets Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:717) Locate a functional C compiler Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpiicc...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/mpiicc...not found Unable to find programs ['mpiicc'] providing listing of the specific search path Warning accessing /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc...found Defined make macro "CC" to "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.o ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status: ======== Checking running linked program ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.o Testing executable /tmp/petsc-QOJMfI/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-QOJMfI/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-QOJMfI/config.setCompilers/conftest Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc --version stdout: gcc (GCC) 8.3.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:756) Locate a functional C preprocessor Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc...found Defined make macro "CPP" to "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:792) Locate a functional CUDA compiler Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc...found Defined make macro "CUDAC" to "/usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Wno-deprecated-gpu-targets /tmp/petsc-QOJMfI/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc --version stdout: nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2020 NVIDIA Corporation Built on Mon_Oct_12_20:09:46_PDT_2020 Cuda compilation tools, release 11.1, V11.1.105 Build cuda_11.1.TC455_06.29190527_0 ============================================================================================= TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:832) Locate a functional CUDA preprocessor Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc...found Defined make macro "CUDAPP" to "/usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include __global__ void testFunction() {return;}; Executing: /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc -E -I/tmp/petsc-QOJMfI/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-QOJMfI/config.setCompilers/conftest.cu Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:866) Locate a functional HIP compiler Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/hipcc...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/hipcc...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/hipcc...not found Checking for program /opt/cray/alps/default/bin/hipcc...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/hipcc...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/hipcc...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/hipcc...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/hipcc...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/hipcc...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/hipcc...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/hipcc...not found Checking for program /opt/esslurm/bin/hipcc...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/hipcc...not found Checking for program /usr/common/software/bin/hipcc...not found Checking for program /usr/common/nsg/bin/hipcc...not found Checking for program /opt/ovis/bin/hipcc...not found Checking for program /opt/ovis/sbin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /bin/hipcc...not found Checking for program /usr/lib/mit/bin/hipcc...not found Checking for program /usr/lib/mit/sbin/hipcc...not found Checking for program /opt/cray/pe/bin/hipcc...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/hipcc...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/opt/rocm/bin/hipcc...not found Checking for program /opt/cray/alps/default/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/esslurm/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/common/software/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/common/nsg/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ovis/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ovis/sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /bin/opt/rocm/bin/hipcc...not found Checking for program /usr/lib/mit/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/lib/mit/sbin/opt/rocm/bin/hipcc...not found Checking for program /opt/cray/pe/bin/opt/rocm/bin/hipcc...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found ============================================================================================= TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:902) Placeholder for now ============================================================================================= TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:923) Locate a functional SYCL compiler ============================================================================================= TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:949) Placeholder for now ============================================================================================= TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1036) Locate a functional Cxx compiler Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpiicpc...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/mpiicpc...not found Unable to find programs ['mpiicpc'] providing listing of the specific search path Warning accessing /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpiicpc...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/mpiicpc...not found Unable to find programs ['mpiicpc'] providing listing of the specific search path Warning accessing /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpiicpc...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/mpiicpc...not found Unable to find programs ['mpiicpc'] providing listing of the specific search path Warning accessing /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx...found Defined make macro "CXX" to "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.o ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status: ======== Checking running linked program ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.o Testing executable /tmp/petsc-QOJMfI/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-QOJMfI/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-QOJMfI/config.setCompilers/conftest Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx --version stdout: g++ (GCC) 8.3.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ============================================================================================= TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1077) Locate a functional Cxx preprocessor Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx...found Defined make macro "CXXPP" to "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -E -I/tmp/petsc-QOJMfI/config.setCompilers /tmp/petsc-QOJMfI/config.setCompilers/conftest.cc Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1176) Locate a functional Fortran compiler Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpiifort...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/mpiifort...not found Unable to find programs ['mpiifort'] providing listing of the specific search path Warning accessing /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90...found Defined make macro "FC" to "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g /tmp/petsc-QOJMfI/config.setCompilers/conftest.F90 Successful compile: Source: program main end ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g /tmp/petsc-QOJMfI/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -g /tmp/petsc-QOJMfI/config.setCompilers/conftest.o ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g /tmp/petsc-QOJMfI/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -g /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status: ======== Checking running linked program ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g /tmp/petsc-QOJMfI/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -g /tmp/petsc-QOJMfI/config.setCompilers/conftest.o Testing executable /tmp/petsc-QOJMfI/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-QOJMfI/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-QOJMfI/config.setCompilers/conftest Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 --version stdout: GNU Fortran (GCC) 8.3.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ============================================================================================= TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1213) Locate a functional Fortran preprocessor Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90...found Defined make macro "FPP" to "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -E" Deleting "FPP" Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90...found Defined make macro "FPP" to "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 --use cpp32" Deleting "FPP" ============================================================================================= TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1235) Make sure fortran comment "!" works ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g /tmp/petsc-QOJMfI/config.setCompilers/conftest.F90 Successful compile: Source: program main ! comment end Fortran comments can use ! in column 1 ============================================================================================= TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1382) ============================================================================================= TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1481) Check that the archiver exists and can make a library usable by the compiler Executing: ar -V stdout: GNU ar (GNU Binutils; openSUSE Leap 15.0) 2.32.0.20190909-lp150.10 Copyright (C) 2019 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils; openSUSE Leap 15.0) 2.32.0.20190909-lp150.10 Copyright (C) 2019 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/ar...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/ar...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/ar...not found Checking for program /opt/cray/alps/default/bin/ar...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/ar...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/ar...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/ar...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/ar...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/ar...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/ar...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/ar...not found Checking for program /opt/esslurm/bin/ar...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/ar...not found Checking for program /usr/common/software/bin/ar...not found Checking for program /usr/common/nsg/bin/ar...not found Checking for program /opt/ovis/bin/ar...not found Checking for program /opt/ovis/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/ranlib...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/ranlib...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/ranlib...not found Checking for program /opt/cray/alps/default/bin/ranlib...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/ranlib...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/ranlib...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/ranlib...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/ranlib...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/ranlib...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/ranlib...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/ranlib...not found Checking for program /opt/esslurm/bin/ranlib...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/ranlib...not found Checking for program /usr/common/software/bin/ranlib...not found Checking for program /usr/common/nsg/bin/ranlib...not found Checking for program /opt/ovis/bin/ranlib...not found Checking for program /opt/ovis/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-QOJMfI/config.setCompilers/libconf1.a /tmp/petsc-QOJMfI/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-QOJMfI/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar (GNU Binutils; openSUSE Leap 15.0) 2.32.0.20190909-lp150.10 Copyright (C) 2019 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils; openSUSE Leap 15.0) 2.32.0.20190909-lp150.10 Copyright (C) 2019 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/ar...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/ar...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/ar...not found Checking for program /opt/cray/alps/default/bin/ar...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/ar...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/ar...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/ar...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/ar...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/ar...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/ar...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/ar...not found Checking for program /opt/esslurm/bin/ar...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/ar...not found Checking for program /usr/common/software/bin/ar...not found Checking for program /usr/common/nsg/bin/ar...not found Checking for program /opt/ovis/bin/ar...not found Checking for program /opt/ovis/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/ranlib...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/ranlib...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/ranlib...not found Checking for program /opt/cray/alps/default/bin/ranlib...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/ranlib...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/ranlib...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/ranlib...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/ranlib...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/ranlib...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/ranlib...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/ranlib...not found Checking for program /opt/esslurm/bin/ranlib...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/ranlib...not found Checking for program /usr/common/software/bin/ranlib...not found Checking for program /usr/common/nsg/bin/ranlib...not found Checking for program /opt/ovis/bin/ranlib...not found Checking for program /opt/ovis/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-QOJMfI/config.setCompilers/libconf1.a /tmp/petsc-QOJMfI/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-QOJMfI/config.setCompilers/libconf1.a ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -L/tmp/petsc-QOJMfI/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ============================================================================================= TESTING: checkArchiverRecipeArgfile from config.setCompilers(config/BuildSystem/config/setCompilers.py:1545) Checks if AR handles @ notation Executing: /usr/bin/ar cr checkRecipeArgfile.a @checkRecipeArgfile.args Defined make macro "AR_ARGFILE" to "yes" ============================================================================================= TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1625) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc using flags ['-shared'] Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc...found Defined make macro "LD_SHARED" to "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc" Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -show stdout: gcc -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -pthread -march=skylake-avx512 -Wl,-rpath -Wl,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,--enable-new-dtags -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi Trying C compiler flag -fPIC Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC Added C compiler flag -fPIC Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.o Valid C linker flag -shared ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/libconftest.so -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.o ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -L/tmp/petsc-QOJMfI/config.setCompilers -lconftest Using shared linker /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux ============================================================================================= TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1325) Determine the PIC option for each compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -show stdout: g++ -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -pthread -march=skylake-avx512 -Wl,-rpath -Wl,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,--enable-new-dtags -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi Trying Cxx compiler flag -fPIC for PIC code Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC Added Cxx compiler flag -fPIC ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/libconftest.so -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.o Accepted Cxx compiler flag -fPIC for PIC code Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 --help | head -n 20 stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -show stdout: gfortran -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -pthread -march=skylake-avx512 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,-rpath -Wl,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,--enable-new-dtags -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi Trying FC compiler flag -fPIC for PIC code Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -g -fPIC Added FC compiler flag -fPIC ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/libconftest.so -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.o Accepted FC compiler flag -fPIC for PIC code Trying CUDA compiler flag -Xcompiler -fPIC for PIC code Executing: /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-QOJMfI/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC Added CUDA compiler flag -Xcompiler -fPIC ===== Checking linker Executing: /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-QOJMfI/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/libconftest.so -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.o Accepted CUDA compiler flag -Xcompiler -fPIC for PIC code ============================================================================================= TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1738) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Executing: uname -s stdout: Linux Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -V Trying C linker flag -Wl,-rpath, Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -Wl,-rpath,/global/u2/m/madams/petsc -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/global/u2/m/madams/petsc Executing: uname -s stdout: Linux Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -Wl,-rpath,/global/u2/m/madams/petsc -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 /tmp/petsc-QOJMfI/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/global/u2/m/madams/petsc Executing: uname -s stdout: Linux Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -V Trying FC linker flag -Wl,-rpath, Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -Wl,-rpath,/global/u2/m/madams/petsc -g -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/global/u2/m/madams/petsc Executing: uname -s stdout: Linux Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -V Trying CUDA linker flag -Wl,-rpath, Executing: /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -Wno-deprecated-gpu-targets /tmp/petsc-QOJMfI/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.o Valid CUDA linker flag -Wl,-rpath,/global/u2/m/madams/petsc ============================================================================================= TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1777) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/libconftest.so -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ============================================================================================= TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1823) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc using flags ['-shared'] Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc" Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -ldl Valid C linker flag -shared ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/libconftest.so -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -ldl ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/tmp/petsc-QOJMfI/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -ldl Using dynamic linker /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc with flags ['-shared'] and library extension so ============================================================================================= TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1872) Output module data as defines and substitutions Substituting "CC" with "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc" Substituting "CFLAGS" with "-g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CUDAC" with "/usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc" Substituting "CUDAFLAGS" with "-Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC" Substituting "CUDAPP" with "/usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc -E" Substituting "CUDAPPFLAGS" with "-Wno-deprecated-gpu-targets" Substituting "CXX" with "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "-g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90" Substituting "FFLAGS" with "-g -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 8.535438 ============================================================================================= TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.000697 ============================================================================================= TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:82) Get the default compiler flags Defined make macro "C_VERSION" to "gcc (GCC) 8.3.0" Ignoring default options which were overridden using --CFLAGS -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Trying C compiler flag -O2 Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 Added C compiler flag -O2 Defined make macro "Cxx_VERSION" to "g++ (GCC) 8.3.0" Ignoring default options which were overridden using --CXXFLAGS -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Trying Cxx compiler flag -O2 Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 Added Cxx compiler flag -O2 Defined make macro "FC_VERSION" to "GNU Fortran (GCC) 8.3.0" Ignoring default options which were overridden using --FFLAGS -g Trying FC compiler flag -O2 Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -g -fPIC -O2 /tmp/petsc-QOJMfI/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -g -fPIC -O2 Added FC compiler flag -O2 Defined make macro "CUDA_VERSION" to "nvcc: NVIDIA (R) Cuda compiler driver" Ignoring default options which were overridden using --CUDAFLAGS -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 Trying CUDA compiler flag -O3 Executing: /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -O3 -Wno-deprecated-gpu-targets /tmp/petsc-QOJMfI/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -O3 Added CUDA compiler flag -O3 ============================================================================================= TESTING: checkIntelHardwareSupport from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:173) Use Linux/MacOS commands to determine what operations the hardware supports Executing: lscpu stdout: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 80 On-line CPU(s) list: 0-79 Thread(s) per core: 2 Core(s) per socket: 20 Socket(s): 2 NUMA node(s): 2 Vendor ID: GenuineIntel CPU family: 6 Model: 85 Model name: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz Stepping: 4 CPU MHz: 2400.000 CPU max MHz: 3700.0000 CPU min MHz: 1000.0000 BogoMIPS: 4800.00 Virtualization: VT-x L1d cache: 32K L1i cache: 32K L2 cache: 1024K L3 cache: 28160K NUMA node0 CPU(s): 0-19,40-59 NUMA node1 CPU(s): 20-39,60-79 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc art arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm 3dnowprefetch cpuid_fault epb cat_l3 cdp_l3 invpcid_single pti intel_ppin ssbd mba ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm mpx rdt_a avx512f avx512dq rdseed adx smap clflushopt clwb intel_pt avx512cd avx512bw avx512vl xsaveopt xsavec xgetbv1 xsaves cqm_llc cqm_occup_llc cqm_mbm_total cqm_mbm_local dtherm ida arat pln pts pku ospke md_clear flush_l1d ============================================================================================= TESTING: checkCompilerMacros from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:164) Save the list of CPP macros defined by the C and C++ compiler, does not work for all compilers Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilerFlags -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.compilerFlags/conftest.c -E -dM stdout: #define __DBL_MIN_EXP__ (-1021) #define __FLT32X_MAX_EXP__ 1024 #define __UINT_LEAST16_MAX__ 0xffff #define __ATOMIC_ACQUIRE 2 #define __FLT128_MAX_10_EXP__ 4932 #define __FLT_MIN__ 1.17549435082228750796873653722224568e-38F #define __GCC_IEC_559_COMPLEX 2 #define __UINT_LEAST8_TYPE__ unsigned char #define __SIZEOF_FLOAT80__ 16 #define __INTMAX_C(c) c ## L #define __CHAR_BIT__ 8 #define __UINT8_MAX__ 0xff #define __WINT_MAX__ 0xffffffffU #define __FLT32_MIN_EXP__ (-125) #define __ORDER_LITTLE_ENDIAN__ 1234 #define __SIZE_MAX__ 0xffffffffffffffffUL #define __WCHAR_MAX__ 0x7fffffff #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __DBL_DENORM_MIN__ ((double)4.94065645841246544176568792868221372e-324L) #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_IEC_559 2 #define LANDAU_MAX_SPECIES 10 #define __FLT32X_DECIMAL_DIG__ 17 #define __FLT_EVAL_METHOD__ 0 #define __unix__ 1 #define __FLT64_DECIMAL_DIG__ 17 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __x86_64 1 #define __UINT_FAST64_MAX__ 0xffffffffffffffffUL #define __SIG_ATOMIC_TYPE__ int #define __DBL_MIN_10_EXP__ (-307) #define __FINITE_MATH_ONLY__ 0 #define __GNUC_PATCHLEVEL__ 0 #define __FLT32_HAS_DENORM__ 1 #define __UINT_FAST8_MAX__ 0xff #define __has_include(STR) __has_include__(STR) #define __DEC64_MAX_EXP__ 385 #define __INT8_C(c) c #define __INT_LEAST8_WIDTH__ 8 #define __UINT_LEAST64_MAX__ 0xffffffffffffffffUL #define __SHRT_MAX__ 0x7fff #define __LDBL_MAX__ 1.18973149535723176502126385303097021e+4932L #define __FLT64X_MAX_10_EXP__ 4932 #define __UINT_LEAST8_MAX__ 0xff #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __FLT128_DENORM_MIN__ 6.47517511943802511092443895822764655e-4966F128 #define __UINTMAX_TYPE__ long unsigned int #define __linux 1 #define __DEC32_EPSILON__ 1E-6DF #define __FLT_EVAL_METHOD_TS_18661_3__ 0 #define __OPTIMIZE__ 1 #define __unix 1 #define __UINT32_MAX__ 0xffffffffU #define __LDBL_MAX_EXP__ 16384 #define __FLT128_MIN_EXP__ (-16381) #define __WINT_MIN__ 0U #define __linux__ 1 #define __FLT128_MIN_10_EXP__ (-4931) #define __INT_LEAST16_WIDTH__ 16 #define __SCHAR_MAX__ 0x7f #define __FLT128_MANT_DIG__ 113 #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define __INT64_C(c) c ## L #define __DBL_DIG__ 15 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __FLT64X_MANT_DIG__ 64 #define __SIZEOF_INT__ 4 #define __SIZEOF_POINTER__ 8 #define __USER_LABEL_PREFIX__ #define __FLT64X_EPSILON__ 1.08420217248550443400745280086994171e-19F64x #define __STDC_HOSTED__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __FLT32_DIG__ 6 #define __FLT_EPSILON__ 1.19209289550781250000000000000000000e-7F #define __SHRT_WIDTH__ 16 #define __LDBL_MIN__ 3.36210314311209350626267781732175260e-4932L #define __STDC_UTF_16__ 1 #define LANDAU_DIM 2 #define __DEC32_MAX__ 9.999999E96DF #define __FLT64X_DENORM_MIN__ 3.64519953188247460252840593361941982e-4951F64x #define __FLT32X_HAS_INFINITY__ 1 #define __INT32_MAX__ 0x7fffffff #define __INT_WIDTH__ 32 #define __SIZEOF_LONG__ 8 #define __STDC_IEC_559__ 1 #define __STDC_ISO_10646__ 201706L #define __UINT16_C(c) c #define __PTRDIFF_WIDTH__ 64 #define __DECIMAL_DIG__ 21 #define __FLT64_EPSILON__ 2.22044604925031308084726333618164062e-16F64 #define __gnu_linux__ 1 #define __INTMAX_WIDTH__ 64 #define __has_include_next(STR) __has_include_next__(STR) #define __FLT64X_MIN_10_EXP__ (-4931) #define __LDBL_HAS_QUIET_NAN__ 1 #define __FLT64_MANT_DIG__ 53 #define __GNUC__ 8 #define __MMX__ 1 #define __FLT_HAS_DENORM__ 1 #define __SIZEOF_LONG_DOUBLE__ 16 #define __BIGGEST_ALIGNMENT__ 16 #define __FLT64_MAX_10_EXP__ 308 #define __DBL_MAX__ ((double)1.79769313486231570814527423731704357e+308L) #define __INT_FAST32_MAX__ 0x7fffffffffffffffL #define __DBL_HAS_INFINITY__ 1 #define __DEC32_MIN_EXP__ (-94) #define __INTPTR_WIDTH__ 64 #define __FLT32X_HAS_DENORM__ 1 #define __INT_FAST16_TYPE__ long int #define __LDBL_HAS_DENORM__ 1 #define __FLT128_HAS_INFINITY__ 1 #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __INT_LEAST32_MAX__ 0x7fffffff #define __DEC32_MIN__ 1E-95DF #define __DBL_MAX_EXP__ 1024 #define __WCHAR_WIDTH__ 32 #define __FLT32_MAX__ 3.40282346638528859811704183484516925e+38F32 #define __DEC128_EPSILON__ 1E-33DL #define __SSE2_MATH__ 1 #define __ATOMIC_HLE_RELEASE 131072 #define __PTRDIFF_MAX__ 0x7fffffffffffffffL #define __amd64 1 #define __STDC_NO_THREADS__ 1 #define __ATOMIC_HLE_ACQUIRE 65536 #define __FLT32_HAS_QUIET_NAN__ 1 #define __LONG_LONG_MAX__ 0x7fffffffffffffffLL #define __SIZEOF_SIZE_T__ 8 #define __FLT64X_MIN_EXP__ (-16381) #define __SIZEOF_WINT_T__ 4 #define __LONG_LONG_WIDTH__ 64 #define PETSC_HAVE_CUDA_ATOMIC 1 #define __FLT32_MAX_EXP__ 128 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __GXX_ABI_VERSION 1013 #define __FLT_MIN_EXP__ (-125) #define __FLT64X_HAS_QUIET_NAN__ 1 #define __INT_FAST64_TYPE__ long int #define __FLT64_DENORM_MIN__ 4.94065645841246544176568792868221372e-324F64 #define __DBL_MIN__ ((double)2.22507385850720138309023271733240406e-308L) #define __LP64__ 1 #define __FLT32X_EPSILON__ 2.22044604925031308084726333618164062e-16F32x #define __DECIMAL_BID_FORMAT__ 1 #define __FLT64_MIN_EXP__ (-1021) #define __FLT64_MIN_10_EXP__ (-307) #define __FLT64X_DECIMAL_DIG__ 21 #define __DEC128_MIN__ 1E-6143DL #define __REGISTER_PREFIX__ #define __UINT16_MAX__ 0xffff #define __DBL_HAS_DENORM__ 1 #define __FLT32_MIN__ 1.17549435082228750796873653722224568e-38F32 #define __UINT8_TYPE__ unsigned char #define __FLT_MANT_DIG__ 24 #define __LDBL_DECIMAL_DIG__ 21 #define __VERSION__ "8.3.0" #define __UINT64_C(c) c ## UL #define _STDC_PREDEF_H 1 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __FLT128_MAX_EXP__ 16384 #define __FLT32_MANT_DIG__ 24 #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __STDC_IEC_559_COMPLEX__ 1 #define __FLT128_HAS_DENORM__ 1 #define __FLT128_DIG__ 33 #define __SCHAR_WIDTH__ 8 #define __INT32_C(c) c #define __DEC64_EPSILON__ 1E-15DD #define __ORDER_PDP_ENDIAN__ 3412 #define __DEC128_MIN_EXP__ (-6142) #define __FLT32_MAX_10_EXP__ 38 #define __INT_FAST32_TYPE__ long int #define __UINT_LEAST16_TYPE__ short unsigned int #define __FLT64X_HAS_INFINITY__ 1 #define unix 1 #define __INT16_MAX__ 0x7fff #define __SIZE_TYPE__ long unsigned int #define __UINT64_MAX__ 0xffffffffffffffffUL #define __FLT64X_DIG__ 18 #define __INT8_TYPE__ signed char #define __ELF__ 1 #define __GCC_ASM_FLAG_OUTPUTS__ 1 #define __FLT_RADIX__ 2 #define __INT_LEAST16_TYPE__ short int #define __LDBL_EPSILON__ 1.08420217248550443400745280086994171e-19L #define __UINTMAX_C(c) c ## UL #define __SSE_MATH__ 1 #define __k8 1 #define __SIG_ATOMIC_MAX__ 0x7fffffff #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __SIZEOF_PTRDIFF_T__ 8 #define __FLT32X_MANT_DIG__ 53 #define __x86_64__ 1 #define LANDAU_MAX_Q 4 #define __FLT32X_MIN_EXP__ (-1021) #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __INT_FAST16_MAX__ 0x7fffffffffffffffL #define __FLT64_DIG__ 15 #define __UINT_FAST32_MAX__ 0xffffffffffffffffUL #define __UINT_LEAST64_TYPE__ long unsigned int #define __FLT_HAS_QUIET_NAN__ 1 #define __FLT_MAX_10_EXP__ 38 #define __LONG_MAX__ 0x7fffffffffffffffL #define __FLT64X_HAS_DENORM__ 1 #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __FLT_HAS_INFINITY__ 1 #define __UINT_FAST16_TYPE__ long unsigned int #define __DEC64_MAX__ 9.999999999999999E384DD #define __INT_FAST32_WIDTH__ 64 #define __CHAR16_TYPE__ short unsigned int #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SIZE_WIDTH__ 64 #define __SEG_FS 1 #define __INT_LEAST16_MAX__ 0x7fff #define __DEC64_MANT_DIG__ 16 #define __INT64_MAX__ 0x7fffffffffffffffL #define __UINT_LEAST32_MAX__ 0xffffffffU #define __SEG_GS 1 #define __FLT32_DENORM_MIN__ 1.40129846432481707092372958328991613e-45F32 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __SIG_ATOMIC_WIDTH__ 32 #define __INT_LEAST64_TYPE__ long int #define __INT16_TYPE__ short int #define __INT_LEAST8_TYPE__ signed char #define __STDC_VERSION__ 201710L #define __DEC32_MAX_EXP__ 97 #define __INT_FAST8_MAX__ 0x7f #define __FLT128_MAX__ 1.18973149535723176508575932662800702e+4932F128 #define __INTPTR_MAX__ 0x7fffffffffffffffL #define linux 1 #define __FLT64_HAS_QUIET_NAN__ 1 #define __FLT32_MIN_10_EXP__ (-37) #define __SSE2__ 1 #define __FLT32X_DIG__ 15 #define __LDBL_MANT_DIG__ 64 #define __DBL_HAS_QUIET_NAN__ 1 #define __FLT64_HAS_INFINITY__ 1 #define __FLT64X_MAX__ 1.18973149535723176502126385303097021e+4932F64x #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __code_model_small__ 1 #define __k8__ 1 #define __INTPTR_TYPE__ long int #define __UINT16_TYPE__ short unsigned int #define __WCHAR_TYPE__ int #define __SIZEOF_FLOAT__ 4 #define __pic__ 2 #define __UINTPTR_MAX__ 0xffffffffffffffffUL #define __INT_FAST64_WIDTH__ 64 #define __DEC64_MIN_EXP__ (-382) #define __FLT32_DECIMAL_DIG__ 9 #define __INT_FAST64_MAX__ 0x7fffffffffffffffL #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __FLT_DIG__ 6 #define __FLT32_HAS_INFINITY__ 1 #define __FLT64X_MAX_EXP__ 16384 #define __UINT_FAST64_TYPE__ long unsigned int #define __INT_MAX__ 0x7fffffff #define __amd64__ 1 #define __INT64_TYPE__ long int #define __FLT_MAX_EXP__ 128 #define __ORDER_BIG_ENDIAN__ 4321 #define __DBL_MANT_DIG__ 53 #define __SIZEOF_FLOAT128__ 16 #define __INT_LEAST64_MAX__ 0x7fffffffffffffffL #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __DEC64_MIN__ 1E-383DD #define __WINT_TYPE__ unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __SIZEOF_SHORT__ 2 #define __SSE__ 1 #define __LDBL_MIN_EXP__ (-16381) #define __FLT64_MAX__ 1.79769313486231570814527423731704357e+308F64 #define __WINT_WIDTH__ 32 #define __INT_LEAST8_MAX__ 0x7f #define __FLT32X_MAX_10_EXP__ 308 #define __SIZEOF_INT128__ 16 #define __LDBL_MAX_10_EXP__ 4932 #define __ATOMIC_RELAXED 0 #define __DBL_EPSILON__ ((double)2.22044604925031308084726333618164062e-16L) #define __FLT128_MIN__ 3.36210314311209350626267781732175260e-4932F128 #define _LP64 1 #define __UINT8_C(c) c #define __FLT64_MAX_EXP__ 1024 #define __INT_LEAST32_TYPE__ int #define __SIZEOF_WCHAR_T__ 4 #define __UINT64_TYPE__ long unsigned int #define __FLT128_HAS_QUIET_NAN__ 1 #define __INT_FAST8_TYPE__ signed char #define __FLT64X_MIN__ 3.36210314311209350626267781732175260e-4932F64x #define __GNUC_STDC_INLINE__ 1 #define __FLT64_HAS_DENORM__ 1 #define __FLT32_EPSILON__ 1.19209289550781250000000000000000000e-7F32 #define __DBL_DECIMAL_DIG__ 17 #define __STDC_UTF_32__ 1 #define __INT_FAST8_WIDTH__ 8 #define __FXSR__ 1 #define __DEC_EVAL_METHOD__ 2 #define __FLT32X_MAX__ 1.79769313486231570814527423731704357e+308F32x #define __UINT32_C(c) c ## U #define __INTMAX_MAX__ 0x7fffffffffffffffL #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLT_DENORM_MIN__ 1.40129846432481707092372958328991613e-45F #define __INT8_MAX__ 0x7f #define __LONG_WIDTH__ 64 #define __PIC__ 2 #define __UINT_FAST32_TYPE__ long unsigned int #define __CHAR32_TYPE__ unsigned int #define __FLT_MAX__ 3.40282346638528859811704183484516925e+38F #define __INT32_TYPE__ int #define __SIZEOF_DOUBLE__ 8 #define __FLT_MIN_10_EXP__ (-37) #define __FLT64_MIN__ 2.22507385850720138309023271733240406e-308F64 #define __INT_LEAST32_WIDTH__ 32 #define __INTMAX_TYPE__ long int #define __DEC128_MAX_EXP__ 6145 #define __FLT32X_HAS_QUIET_NAN__ 1 #define __ATOMIC_CONSUME 1 #define __GNUC_MINOR__ 3 #define __INT_FAST16_WIDTH__ 64 #define __UINTMAX_MAX__ 0xffffffffffffffffUL #define __DEC32_MANT_DIG__ 7 #define __FLT32X_DENORM_MIN__ 4.94065645841246544176568792868221372e-324F32x #define __DBL_MAX_10_EXP__ 308 #define __LDBL_DENORM_MIN__ 3.64519953188247460252840593361941982e-4951L #define __INT16_C(c) c #define __STDC__ 1 #define __PTRDIFF_TYPE__ long int #define __ATOMIC_SEQ_CST 5 #define __UINT32_TYPE__ unsigned int #define __FLT32X_MIN_10_EXP__ (-307) #define __UINTPTR_TYPE__ long unsigned int #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __LDBL_MIN_10_EXP__ (-4931) #define __FLT128_EPSILON__ 1.92592994438723585305597794258492732e-34F128 #define __SIZEOF_LONG_LONG__ 8 #define __FLT128_DECIMAL_DIG__ 36 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __FLT32X_MIN__ 2.22507385850720138309023271733240406e-308F32x #define __LDBL_DIG__ 18 #define __FLT_DECIMAL_DIG__ 9 #define __UINT_FAST16_MAX__ 0xffffffffffffffffUL #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __INT_LEAST64_WIDTH__ 64 #define __UINT_FAST8_TYPE__ unsigned char #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_RELEASE 3 Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilerFlags -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.compilerFlags/conftest.cc -E -dM stdout: #define __DBL_MIN_EXP__ (-1021) #define __FLT32X_MAX_EXP__ 1024 #define __cpp_attributes 200809 #define __UINT_LEAST16_MAX__ 0xffff #define __ATOMIC_ACQUIRE 2 #define __FLT128_MAX_10_EXP__ 4932 #define __FLT_MIN__ 1.17549435082228750796873653722224568e-38F #define __GCC_IEC_559_COMPLEX 2 #define __cpp_aggregate_nsdmi 201304 #define __UINT_LEAST8_TYPE__ unsigned char #define __SIZEOF_FLOAT80__ 16 #define __INTMAX_C(c) c ## L #define __CHAR_BIT__ 8 #define __UINT8_MAX__ 0xff #define __WINT_MAX__ 0xffffffffU #define __FLT32_MIN_EXP__ (-125) #define __cpp_static_assert 200410 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __SIZE_MAX__ 0xffffffffffffffffUL #define __WCHAR_MAX__ 0x7fffffff #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __DBL_DENORM_MIN__ double(4.94065645841246544176568792868221372e-324L) #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_IEC_559 2 #define LANDAU_MAX_SPECIES 10 #define __FLT32X_DECIMAL_DIG__ 17 #define __FLT_EVAL_METHOD__ 0 #define __unix__ 1 #define __cpp_binary_literals 201304 #define __FLT64_DECIMAL_DIG__ 17 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __x86_64 1 #define __cpp_variadic_templates 200704 #define __UINT_FAST64_MAX__ 0xffffffffffffffffUL #define __SIG_ATOMIC_TYPE__ int #define __DBL_MIN_10_EXP__ (-307) #define __FINITE_MATH_ONLY__ 0 #define __cpp_variable_templates 201304 #define __GNUC_PATCHLEVEL__ 0 #define __FLT32_HAS_DENORM__ 1 #define __UINT_FAST8_MAX__ 0xff #define __has_include(STR) __has_include__(STR) #define __DEC64_MAX_EXP__ 385 #define __INT8_C(c) c #define __INT_LEAST8_WIDTH__ 8 #define __UINT_LEAST64_MAX__ 0xffffffffffffffffUL #define __SHRT_MAX__ 0x7fff #define __LDBL_MAX__ 1.18973149535723176502126385303097021e+4932L #define __FLT64X_MAX_10_EXP__ 4932 #define __UINT_LEAST8_MAX__ 0xff #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __FLT128_DENORM_MIN__ 6.47517511943802511092443895822764655e-4966F128 #define __UINTMAX_TYPE__ long unsigned int #define __linux 1 #define __DEC32_EPSILON__ 1E-6DF #define __FLT_EVAL_METHOD_TS_18661_3__ 0 #define __OPTIMIZE__ 1 #define __unix 1 #define __UINT32_MAX__ 0xffffffffU #define __GXX_EXPERIMENTAL_CXX0X__ 1 #define __LDBL_MAX_EXP__ 16384 #define __FLT128_MIN_EXP__ (-16381) #define __WINT_MIN__ 0U #define __linux__ 1 #define __FLT128_MIN_10_EXP__ (-4931) #define __INT_LEAST16_WIDTH__ 16 #define __SCHAR_MAX__ 0x7f #define __FLT128_MANT_DIG__ 113 #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define __INT64_C(c) c ## L #define __DBL_DIG__ 15 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __FLT64X_MANT_DIG__ 64 #define __SIZEOF_INT__ 4 #define __SIZEOF_POINTER__ 8 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __USER_LABEL_PREFIX__ #define __FLT64X_EPSILON__ 1.08420217248550443400745280086994171e-19F64x #define __STDC_HOSTED__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __FLT32_DIG__ 6 #define __FLT_EPSILON__ 1.19209289550781250000000000000000000e-7F #define __GXX_WEAK__ 1 #define __SHRT_WIDTH__ 16 #define __LDBL_MIN__ 3.36210314311209350626267781732175260e-4932L #define LANDAU_DIM 2 #define __DEC32_MAX__ 9.999999E96DF #define __cpp_threadsafe_static_init 200806 #define __FLT64X_DENORM_MIN__ 3.64519953188247460252840593361941982e-4951F64x #define __FLT32X_HAS_INFINITY__ 1 #define __INT32_MAX__ 0x7fffffff #define __INT_WIDTH__ 32 #define __SIZEOF_LONG__ 8 #define __STDC_IEC_559__ 1 #define __STDC_ISO_10646__ 201706L #define __UINT16_C(c) c #define __PTRDIFF_WIDTH__ 64 #define __DECIMAL_DIG__ 21 #define __FLT64_EPSILON__ 2.22044604925031308084726333618164062e-16F64 #define __gnu_linux__ 1 #define __INTMAX_WIDTH__ 64 #define __FLT64_MIN_EXP__ (-1021) #define __has_include_next(STR) __has_include_next__(STR) #define __FLT64X_MIN_10_EXP__ (-4931) #define __LDBL_HAS_QUIET_NAN__ 1 #define __FLT64_MANT_DIG__ 53 #define __GNUC__ 8 #define __GXX_RTTI 1 #define __MMX__ 1 #define __cpp_delegating_constructors 200604 #define __FLT_HAS_DENORM__ 1 #define __SIZEOF_LONG_DOUBLE__ 16 #define __BIGGEST_ALIGNMENT__ 16 #define __STDC_UTF_16__ 1 #define __FLT64_MAX_10_EXP__ 308 #define __FLT32_HAS_INFINITY__ 1 #define __DBL_MAX__ double(1.79769313486231570814527423731704357e+308L) #define __cpp_raw_strings 200710 #define __INT_FAST32_MAX__ 0x7fffffffffffffffL #define __DBL_HAS_INFINITY__ 1 #define __DEC32_MIN_EXP__ (-94) #define __INTPTR_WIDTH__ 64 #define __FLT32X_HAS_DENORM__ 1 #define __INT_FAST16_TYPE__ long int #define __LDBL_HAS_DENORM__ 1 #define __cplusplus 201402L #define __cpp_ref_qualifiers 200710 #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __INT_LEAST32_MAX__ 0x7fffffff #define __DEC32_MIN__ 1E-95DF #define __DEPRECATED 1 #define __cpp_rvalue_references 200610 #define __DBL_MAX_EXP__ 1024 #define __WCHAR_WIDTH__ 32 #define __FLT32_MAX__ 3.40282346638528859811704183484516925e+38F32 #define __DEC128_EPSILON__ 1E-33DL #define __SSE2_MATH__ 1 #define __ATOMIC_HLE_RELEASE 131072 #define __PTRDIFF_MAX__ 0x7fffffffffffffffL #define __amd64 1 #define __STDC_NO_THREADS__ 1 #define __ATOMIC_HLE_ACQUIRE 65536 #define __FLT32_HAS_QUIET_NAN__ 1 #define __GNUG__ 8 #define __LONG_LONG_MAX__ 0x7fffffffffffffffLL #define __SIZEOF_SIZE_T__ 8 #define __cpp_rvalue_reference 200610 #define __cpp_nsdmi 200809 #define __FLT64X_MIN_EXP__ (-16381) #define __SIZEOF_WINT_T__ 4 #define __LONG_LONG_WIDTH__ 64 #define __cpp_initializer_lists 200806 #define PETSC_HAVE_CUDA_ATOMIC 1 #define __FLT32_MAX_EXP__ 128 #define __cpp_hex_float 201603 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __GXX_ABI_VERSION 1013 #define __FLT128_HAS_INFINITY__ 1 #define __FLT_MIN_EXP__ (-125) #define __cpp_lambdas 200907 #define __FLT64X_HAS_QUIET_NAN__ 1 #define __INT_FAST64_TYPE__ long int #define __FLT64_DENORM_MIN__ 4.94065645841246544176568792868221372e-324F64 #define __DBL_MIN__ double(2.22507385850720138309023271733240406e-308L) #define __LP64__ 1 #define __FLT32X_EPSILON__ 2.22044604925031308084726333618164062e-16F32x #define __DECIMAL_BID_FORMAT__ 1 #define __FLT64_MIN_10_EXP__ (-307) #define __FLT64X_DECIMAL_DIG__ 21 #define __DEC128_MIN__ 1E-6143DL #define __REGISTER_PREFIX__ #define __UINT16_MAX__ 0xffff #define __DBL_HAS_DENORM__ 1 #define __FLT32_MIN__ 1.17549435082228750796873653722224568e-38F32 #define __UINT8_TYPE__ unsigned char #define __FLT_MANT_DIG__ 24 #define __LDBL_DECIMAL_DIG__ 21 #define __VERSION__ "8.3.0" #define __UINT64_C(c) c ## UL #define __cpp_unicode_characters 200704 #define _STDC_PREDEF_H 1 #define __cpp_decltype_auto 201304 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __FLT128_MAX_EXP__ 16384 #define __FLT32_MANT_DIG__ 24 #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __STDC_IEC_559_COMPLEX__ 1 #define __FLT128_HAS_DENORM__ 1 #define __FLT128_DIG__ 33 #define __SCHAR_WIDTH__ 8 #define __INT32_C(c) c #define __DEC64_EPSILON__ 1E-15DD #define __ORDER_PDP_ENDIAN__ 3412 #define __DEC128_MIN_EXP__ (-6142) #define __FLT32_MAX_10_EXP__ 38 #define __INT_FAST32_TYPE__ long int #define __UINT_LEAST16_TYPE__ short unsigned int #define __FLT64X_HAS_INFINITY__ 1 #define unix 1 #define __INT16_MAX__ 0x7fff #define __cpp_rtti 199711 #define __SIZE_TYPE__ long unsigned int #define __UINT64_MAX__ 0xffffffffffffffffUL #define __FLT64X_DIG__ 18 #define __INT8_TYPE__ signed char #define __cpp_digit_separators 201309 #define __ELF__ 1 #define __GCC_ASM_FLAG_OUTPUTS__ 1 #define __FLT_RADIX__ 2 #define __INT_LEAST16_TYPE__ short int #define __LDBL_EPSILON__ 1.08420217248550443400745280086994171e-19L #define __UINTMAX_C(c) c ## UL #define __GLIBCXX_BITSIZE_INT_N_0 128 #define __k8 1 #define __SIG_ATOMIC_MAX__ 0x7fffffff #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __SIZEOF_PTRDIFF_T__ 8 #define __FLT32X_MANT_DIG__ 53 #define __x86_64__ 1 #define LANDAU_MAX_Q 4 #define __FLT32X_MIN_EXP__ (-1021) #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __INT_FAST16_MAX__ 0x7fffffffffffffffL #define __FLT64_DIG__ 15 #define __UINT_FAST32_MAX__ 0xffffffffffffffffUL #define __UINT_LEAST64_TYPE__ long unsigned int #define __FLT_HAS_QUIET_NAN__ 1 #define __FLT_MAX_10_EXP__ 38 #define __LONG_MAX__ 0x7fffffffffffffffL #define __FLT64X_HAS_DENORM__ 1 #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __FLT_HAS_INFINITY__ 1 #define __cpp_unicode_literals 200710 #define __UINT_FAST16_TYPE__ long unsigned int #define __DEC64_MAX__ 9.999999999999999E384DD #define __INT_FAST32_WIDTH__ 64 #define __CHAR16_TYPE__ short unsigned int #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SIZE_WIDTH__ 64 #define __SEG_FS 1 #define __INT_LEAST16_MAX__ 0x7fff #define __DEC64_MANT_DIG__ 16 #define __INT64_MAX__ 0x7fffffffffffffffL #define __UINT_LEAST32_MAX__ 0xffffffffU #define __SEG_GS 1 #define __FLT32_DENORM_MIN__ 1.40129846432481707092372958328991613e-45F32 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __SIG_ATOMIC_WIDTH__ 32 #define __INT_LEAST64_TYPE__ long int #define __INT16_TYPE__ short int #define __INT_LEAST8_TYPE__ signed char #define __DEC32_MAX_EXP__ 97 #define __INT_FAST8_MAX__ 0x7f #define __FLT128_MAX__ 1.18973149535723176508575932662800702e+4932F128 #define __INTPTR_MAX__ 0x7fffffffffffffffL #define __cpp_sized_deallocation 201309 #define linux 1 #define __cpp_range_based_for 200907 #define __FLT64_HAS_QUIET_NAN__ 1 #define __FLT32_MIN_10_EXP__ (-37) #define __SSE2__ 1 #define __EXCEPTIONS 1 #define __LDBL_MANT_DIG__ 64 #define __DBL_HAS_QUIET_NAN__ 1 #define __FLT64_HAS_INFINITY__ 1 #define __FLT64X_MAX__ 1.18973149535723176502126385303097021e+4932F64x #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __code_model_small__ 1 #define __cpp_return_type_deduction 201304 #define __k8__ 1 #define __INTPTR_TYPE__ long int #define __UINT16_TYPE__ short unsigned int #define __WCHAR_TYPE__ int #define __SIZEOF_FLOAT__ 4 #define __pic__ 2 #define __UINTPTR_MAX__ 0xffffffffffffffffUL #define __INT_FAST64_WIDTH__ 64 #define __DEC64_MIN_EXP__ (-382) #define __cpp_decltype 200707 #define __FLT32_DECIMAL_DIG__ 9 #define __INT_FAST64_MAX__ 0x7fffffffffffffffL #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __FLT_DIG__ 6 #define __FLT64X_MAX_EXP__ 16384 #define __UINT_FAST64_TYPE__ long unsigned int #define __INT_MAX__ 0x7fffffff #define __amd64__ 1 #define __INT64_TYPE__ long int #define __FLT_MAX_EXP__ 128 #define __ORDER_BIG_ENDIAN__ 4321 #define __DBL_MANT_DIG__ 53 #define __cpp_inheriting_constructors 201511 #define __SIZEOF_FLOAT128__ 16 #define __INT_LEAST64_MAX__ 0x7fffffffffffffffL #define __DEC64_MIN__ 1E-383DD #define __WINT_TYPE__ unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __SIZEOF_SHORT__ 2 #define __SSE__ 1 #define __LDBL_MIN_EXP__ (-16381) #define __FLT64_MAX__ 1.79769313486231570814527423731704357e+308F64 #define __WINT_WIDTH__ 32 #define __INT_LEAST8_MAX__ 0x7f #define __FLT32X_MAX_10_EXP__ 308 #define __SIZEOF_INT128__ 16 #define __LDBL_MAX_10_EXP__ 4932 #define __ATOMIC_RELAXED 0 #define __DBL_EPSILON__ double(2.22044604925031308084726333618164062e-16L) #define __FLT128_MIN__ 3.36210314311209350626267781732175260e-4932F128 #define _LP64 1 #define __UINT8_C(c) c #define __FLT64_MAX_EXP__ 1024 #define __INT_LEAST32_TYPE__ int #define __SIZEOF_WCHAR_T__ 4 #define __FLT128_HAS_QUIET_NAN__ 1 #define __INT_FAST8_TYPE__ signed char #define __FLT64X_MIN__ 3.36210314311209350626267781732175260e-4932F64x #define __GNUC_STDC_INLINE__ 1 #define __FLT64_HAS_DENORM__ 1 #define __FLT32_EPSILON__ 1.19209289550781250000000000000000000e-7F32 #define __DBL_DECIMAL_DIG__ 17 #define __STDC_UTF_32__ 1 #define __INT_FAST8_WIDTH__ 8 #define __FXSR__ 1 #define __DEC_EVAL_METHOD__ 2 #define __FLT32X_MAX__ 1.79769313486231570814527423731704357e+308F32x #define __cpp_runtime_arrays 198712 #define __UINT64_TYPE__ long unsigned int #define __UINT32_C(c) c ## U #define __INTMAX_MAX__ 0x7fffffffffffffffL #define __cpp_alias_templates 200704 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLT_DENORM_MIN__ 1.40129846432481707092372958328991613e-45F #define __INT8_MAX__ 0x7f #define __LONG_WIDTH__ 64 #define __PIC__ 2 #define __UINT_FAST32_TYPE__ long unsigned int #define __CHAR32_TYPE__ unsigned int #define __FLT_MAX__ 3.40282346638528859811704183484516925e+38F #define __cpp_constexpr 201304 #define __INT32_TYPE__ int #define __SIZEOF_DOUBLE__ 8 #define __cpp_exceptions 199711 #define __FLT_MIN_10_EXP__ (-37) #define __FLT64_MIN__ 2.22507385850720138309023271733240406e-308F64 #define __INT_LEAST32_WIDTH__ 32 #define __INTMAX_TYPE__ long int #define __DEC128_MAX_EXP__ 6145 #define __FLT32X_HAS_QUIET_NAN__ 1 #define __ATOMIC_CONSUME 1 #define __GNUC_MINOR__ 3 #define __GLIBCXX_TYPE_INT_N_0 __int128 #define __INT_FAST16_WIDTH__ 64 #define __UINTMAX_MAX__ 0xffffffffffffffffUL #define __DEC32_MANT_DIG__ 7 #define __FLT32X_DENORM_MIN__ 4.94065645841246544176568792868221372e-324F32x #define __DBL_MAX_10_EXP__ 308 #define __LDBL_DENORM_MIN__ 3.64519953188247460252840593361941982e-4951L #define __INT16_C(c) c #define __cpp_generic_lambdas 201304 #define __STDC__ 1 #define __FLT32X_DIG__ 15 #define __PTRDIFF_TYPE__ long int #define __ATOMIC_SEQ_CST 5 #define __UINT32_TYPE__ unsigned int #define __FLT32X_MIN_10_EXP__ (-307) #define __UINTPTR_TYPE__ long unsigned int #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __LDBL_MIN_10_EXP__ (-4931) #define __FLT128_EPSILON__ 1.92592994438723585305597794258492732e-34F128 #define __SSE_MATH__ 1 #define __SIZEOF_LONG_LONG__ 8 #define __cpp_user_defined_literals 200809 #define __FLT128_DECIMAL_DIG__ 36 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __FLT32X_MIN__ 2.22507385850720138309023271733240406e-308F32x #define __LDBL_DIG__ 18 #define __FLT_DECIMAL_DIG__ 9 #define __UINT_FAST16_MAX__ 0xffffffffffffffffUL #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __INT_LEAST64_WIDTH__ 64 #define __UINT_FAST8_TYPE__ unsigned char #define _GNU_SOURCE 1 #define __cpp_init_captures 201304 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_RELEASE 3 child config.compilerFlags 1.204465 Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler ============================================================================================= TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1430) Check for -std=c99 or equivalent flag Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 Accepted C99 compile flag: ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:158) Check for the C/CXX restrict keyword Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -V ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:413) Activate format string checking if using the GNU compilers ============================================================================================= TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:128) Check for C inline keyword ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ============================================================================================= TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:424) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.compilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ============================================================================================= TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:222) Determines the libraries needed to link with C compiled code ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.compilers/conftest -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.o /tmp/petsc-QOJMfI/config.compilers/confc.o -ldl C libraries are not needed when using Fortran linker ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -o /tmp/petsc-QOJMfI/config.compilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.o /tmp/petsc-QOJMfI/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1381) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -MMD -MP /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -MMD -MP Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -MMD -MP /tmp/petsc-QOJMfI/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -MMD -MP Trying CUDA compiler flag -MMD -MP Defined make macro "CUDA_DEPFLAGS" to "-MMD -MP" Executing: /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -O3 -MMD -MP -Wno-deprecated-gpu-targets /tmp/petsc-QOJMfI/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -O3 -MMD -MP Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:158) Check for the C/CXX restrict keyword Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -V ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:471) Determine the CXX dialect supported by the compiler(language) [and correspoding compiler option - if any]. isGNU indicates if the compiler is g++. -with--dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 for Cxx with flag: Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4) + (int)std::real(I); ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 ============================================================================================= TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:443) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 ============================================================================================= TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:143) Check for C++ inline keyword ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ============================================================================================= TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:566) Determines the libraries needed to link with C++ from C and Fortran ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.compilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.o /tmp/petsc-QOJMfI/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/confc.o: in function `asub()': /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `std::cout' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/confc.o: in function `__static_initialization_and_destruction_0': /global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/include/c++/8.3.0/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/bin/ld: /global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/include/c++/8.3.0/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/confc.o:(.data.rel.local.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/confc.o:(.data.rel.local.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/confc.o: in function `asub()': /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `std::cout' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/confc.o: in function `__static_initialization_and_destruction_0': /global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/include/c++/8.3.0/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/bin/ld: /global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/include/c++/8.3.0/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/confc.o:(.data.rel.local.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/confc.o:(.data.rel.local.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/confc.o: in function `asub()': /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `std::cout' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/confc.o: in function `__static_initialization_and_destruction_0': /global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/include/c++/8.3.0/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/bin/ld: /global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/include/c++/8.3.0/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/confc.o:(.data.rel.local.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/confc.o:(.data.rel.local.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' collect2: error: ld returned 1 exit status: Executing: uname -s stdout: Linux ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.compilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.o /tmp/petsc-QOJMfI/config.compilers/confc.o -lstdc++ -ldl compilers: C++ requires -lstdc++ to link with C compiler ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.compilers/conftest -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.o /tmp/petsc-QOJMfI/config.compilers/confc.o -lstdc++ -ldl C++ libraries are not needed when using FC linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -V ============================================================================================= TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:873) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS Testing Fortran mangling type underscore with code void d1chk_(void){return;} ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.compilers/conftest -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.o /tmp/petsc-QOJMfI/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 --version stdout: GNU Fortran (GCC) 8.3.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran8plus compiler Defined "FORTRAN_CHARLEN_T" to "size_t" ============================================================================================= TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:911) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.compilers/conftest -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.o /tmp/petsc-QOJMfI/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.o: in function `MAIN__': /tmp/petsc-QOJMfI/config.compilers/conftest.F90:2: undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.o: in function `MAIN__': /tmp/petsc-QOJMfI/config.compilers/conftest.F90:2: undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.o: in function `MAIN__': /tmp/petsc-QOJMfI/config.compilers/conftest.F90:2: undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:921) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.F90 Successful compile: Source: program main #include call MPI_Allreduce() end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.compilers/conftest -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.o -lstdc++ -ldl ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.F90 Successful compile: Source: subroutine asub() print*,'testing' call MPI_Allreduce() return end ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern void asub_(void); int main(int argc,char **args) { asub_(); return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.compilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.o /tmp/petsc-QOJMfI/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/confc.o: in function `asub_': /tmp/petsc-QOJMfI/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.F90:2: undefined reference to `_gfortran_transfer_character_write' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write_done' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.F90:3: undefined reference to `mpi_allreduce_' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/confc.o: in function `asub_': /tmp/petsc-QOJMfI/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.F90:2: undefined reference to `_gfortran_transfer_character_write' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write_done' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.F90:3: undefined reference to `mpi_allreduce_' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/confc.o: in function `asub_': /tmp/petsc-QOJMfI/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.F90:2: undefined reference to `_gfortran_transfer_character_write' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write_done' /usr/bin/ld: /tmp/petsc-QOJMfI/config.compilers/conftest.F90:3: undefined reference to `mpi_allreduce_' collect2: error: ld returned 1 exit status: Fortran code cannot directly be linked with C linker, therefore will determine needed Fortran libraries Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.F90 Successful compile: Source: program main end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.compilers/conftest -v -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: Driving: /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/gfortran -o /tmp/petsc-QOJMfI/config.compilers/conftest -v -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.o -lstdc++ -ldl -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -pthread -march=skylake-avx512 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,-rpath -Wl,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,--enable-new-dtags -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -l gfortran -l m -shared-libgcc Using built-in specs. COLLECT_GCC=/usr/common/software/sles15_cgpu/gcc/8.3.0/bin/gfortran COLLECT_LTO_WRAPPER=/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/lto-wrapper Target: x86_64-pc-linux-gnu Configured with: ./configure --prefix=/usr/common/software/sles15_cgpu/gcc/8.3.0 --enable-languages=c,c++,fortran --disable-multilib Thread model: posix gcc version 8.3.0 (GCC) Reading specs from /usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/../lib64/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-QOJMfI/config.compilers/conftest' '-v' '-g' '-fPIC' '-O2' '-I' '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include' '-pthread' '-march=skylake-avx512' '-I' '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib' '-L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib' '-shared-libgcc' COMPILER_PATH=/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/:/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/ LIBRARY_PATH=/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0/:/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/:/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/../lib64/:/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/bin/../lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/:/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/bin/../lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-QOJMfI/config.compilers/conftest' '-v' '-g' '-fPIC' '-O2' '-I' '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include' '-pthread' '-march=skylake-avx512' '-I' '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib' '-L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib' '-shared-libgcc' /usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/collect2 -plugin /usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/liblto_plugin.so -plugin-opt=/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/lto-wrapper -plugin-opt=-fresolution=/tmp/cc2IJb9Q.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lpthread -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o /tmp/petsc-QOJMfI/config.compilers/conftest /usr/lib/../lib64/crt1.o /usr/lib/../lib64/crti.o /usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0/crtbegin.o -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/../lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/bin/../lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/bin/../lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../.. /tmp/petsc-QOJMfI/config.compilers/conftest.o -lstdc++ -ldl -rpath /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib --enable-new-dtags -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lpthread -lc -lgcc_s -lgcc /usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0/crtend.o /usr/lib/../lib64/crtn.o COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-QOJMfI/config.compilers/conftest' '-v' '-g' '-fPIC' '-O2' '-I' '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include' '-pthread' '-march=skylake-avx512' '-I' '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib' '-L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib' '-shared-libgcc' Linker output before filtering: Driving: /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/gfortran -o /tmp/petsc-QOJMfI/config.compilers/conftest -v -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.o -lstdc++ -ldl -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -pthread -march=skylake-avx512 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,-rpath -Wl,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,--enable-new-dtags -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -l gfortran -l m -shared-libgcc Using built-in specs. COLLECT_GCC=/usr/common/software/sles15_cgpu/gcc/8.3.0/bin/gfortran COLLECT_LTO_WRAPPER=/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/lto-wrapper Target: x86_64-pc-linux-gnu Configured with: ./configure --prefix=/usr/common/software/sles15_cgpu/gcc/8.3.0 --enable-languages=c,c++,fortran --disable-multilib Thread model: posix gcc version 8.3.0 (GCC) Reading specs from /usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/../lib64/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-QOJMfI/config.compilers/conftest' '-v' '-g' '-fPIC' '-O2' '-I' '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include' '-pthread' '-march=skylake-avx512' '-I' '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib' '-L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib' '-shared-libgcc' COMPILER_PATH=/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/:/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/ LIBRARY_PATH=/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0/:/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/:/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/../lib64/:/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/bin/../lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/:/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/bin/../lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-QOJMfI/config.compilers/conftest' '-v' '-g' '-fPIC' '-O2' '-I' '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include' '-pthread' '-march=skylake-avx512' '-I' '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib' '-L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib' '-shared-libgcc' /usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/collect2 -plugin /usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/liblto_plugin.so -plugin-opt=/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/lto-wrapper -plugin-opt=-fresolution=/tmp/cc2IJb9Q.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lpthread -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o /tmp/petsc-QOJMfI/config.compilers/conftest /usr/lib/../lib64/crt1.o /usr/lib/../lib64/crti.o /usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0/crtbegin.o -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/../lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/bin/../lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/bin/../lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../.. /tmp/petsc-QOJMfI/config.compilers/conftest.o -lstdc++ -ldl -rpath /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib --enable-new-dtags -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lpthread -lc -lgcc_s -lgcc /usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0/crtend.o /usr/lib/../lib64/crtn.o COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-QOJMfI/config.compilers/conftest' '-v' '-g' '-fPIC' '-O2' '-I' '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include' '-pthread' '-march=skylake-avx512' '-I' '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib' '-L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib' '-shared-libgcc' : Linker output after filtering: Driving: /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/gfortran -o /tmp/petsc-QOJMfI/config.compilers/conftest -v -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.o -lstdc++ -ldl -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -pthread -march=skylake-avx512 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,-rpath -Wl,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,--enable-new-dtags -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -l gfortran -l m -shared-libgcc Using built-in specs. COLLECT_GCC=/usr/common/software/sles15_cgpu/gcc/8.3.0/bin/gfortran COLLECT_LTO_WRAPPER=/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/lto-wrapper Target: x86_64-pc-linux-gnu Configured with: ./configure --prefix=/usr/common/software/sles15_cgpu/gcc/8.3.0 --enable-languages=c,c++,fortran --disable-multilib Thread model: posix gcc version 8.3.0 (GCC) Reading specs from /usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/../lib64/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-QOJMfI/config.compilers/conftest' '-v' '-g' '-fPIC' '-O2' '-I' '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include' '-pthread' '-march=skylake-avx512' '-I' '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib' '-L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib' '-shared-libgcc' COMPILER_PATH=/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/:/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/ LIBRARY_PATH=/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0/:/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/:/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/../lib64/:/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/bin/../lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/:/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/bin/../lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-QOJMfI/config.compilers/conftest' '-v' '-g' '-fPIC' '-O2' '-I' '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include' '-pthread' '-march=skylake-avx512' '-I' '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib' '-L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib' '-shared-libgcc' /usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/collect2 -plugin /usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/liblto_plugin.so -plugin-opt=/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/lto-wrapper -plugin-opt=-fresolution=/tmp/cc2IJb9Q.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lpthread -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o /tmp/petsc-QOJMfI/config.compilers/conftest /usr/lib/../lib64/crt1.o /usr/lib/../lib64/crti.o /usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0/crtbegin.o -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/../lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/bin/../lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/bin/../lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../.. /tmp/petsc-QOJMfI/config.compilers/conftest.o -lstdc++ -ldl -rpath /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib --enable-new-dtags -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lpthread -lc -lgcc_s -lgcc /usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0/crtend.o /usr/lib/../lib64/crtn.o COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-QOJMfI/config.compilers/conftest' '-v' '-g' '-fPIC' '-O2' '-I' '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include' '-pthread' '-march=skylake-avx512' '-I' '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib' '-L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib' '-shared-libgcc': compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/gfortran compilers: Unknown arg /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/gfortran compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-QOJMfI/config.compilers/conftest compilers: Unknown arg /tmp/petsc-QOJMfI/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -O2 compilers: Unknown arg -O2 compilers: Checking arg /tmp/petsc-QOJMfI/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-QOJMfI/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include compilers: Found include directory: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include compilers: Checking arg -pthread compilers: Unknown arg -pthread compilers: Checking arg -march=skylake-avx512 compilers: Unknown arg -march=skylake-avx512 compilers: Checking arg -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib compilers: Found include directory: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib compilers: Checking arg -Wl,-rpath compilers: Unknown arg -Wl,-rpath compilers: Checking arg -Wl,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib compilers: Unknown arg -Wl,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib compilers: Checking arg -Wl,--enable-new-dtags compilers: Unknown arg -Wl,--enable-new-dtags compilers: Checking arg -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib compilers: Found library directory: -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib compilers: Checking arg -lmpi_usempif08 compilers: Found library: -lmpi_usempif08 compilers: Checking arg -lmpi_usempi_ignore_tkr compilers: Found library: -lmpi_usempi_ignore_tkr compilers: Checking arg -lmpi_mpifh compilers: Found library: -lmpi_mpifh compilers: Checking arg -lmpi compilers: Found library: -lmpi compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -l compilers: Found canonical library: -lm compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=/usr/common/software/sles15_cgpu/gcc/8.3.0/bin/gfortran compilers: Unknown arg COLLECT_GCC=/usr/common/software/sles15_cgpu/gcc/8.3.0/bin/gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-pc-linux-gnu compilers: Unknown arg x86_64-pc-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ./configure compilers: Unknown arg ./configure compilers: Checking arg --prefix=/usr/common/software/sles15_cgpu/gcc/8.3.0 compilers: Unknown arg --prefix=/usr/common/software/sles15_cgpu/gcc/8.3.0 compilers: Checking arg --enable-languages=c,c++,fortran compilers: Unknown arg --enable-languages=c,c++,fortran compilers: Checking arg --disable-multilib compilers: Unknown arg --disable-multilib compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 8.3.0 compilers: Unknown arg 8.3.0 compilers: Checking arg (GCC) compilers: Unknown arg (GCC) compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/../lib64/libgfortran.spec compilers: Unknown arg /usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/../lib64/libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg COMPILER_PATH=/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/:/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/ compilers: Skipping arg COMPILER_PATH=/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/:/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/ compilers: Checking arg LIBRARY_PATH=/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0/:/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/:/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/../lib64/:/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/bin/../lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/:/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/bin/../lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../:/lib/:/usr/lib/ compilers: Skipping arg LIBRARY_PATH=/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0/:/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/:/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/../lib64/:/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/bin/../lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/:/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/bin/../lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/collect2 compilers: Unknown arg /usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/collect2 compilers: Checking arg -plugin compilers: Unknown arg -plugin compilers: Checking arg /usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/liblto_plugin.so compilers: Unknown arg /usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/liblto_plugin.so compilers: Checking arg -plugin-opt=/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/lto-wrapper compilers: Unknown arg -plugin-opt=/usr/common/software/sles15_cgpu/gcc/8.3.0/libexec/gcc/x86_64-pc-linux-gnu/8.3.0/lto-wrapper compilers: Checking arg -plugin-opt=-fresolution=/tmp/cc2IJb9Q.res compilers: Unknown arg -plugin-opt=-fresolution=/tmp/cc2IJb9Q.res compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lquadmath compilers: Unknown arg -plugin-opt=-pass-through=-lquadmath compilers: Checking arg -plugin-opt=-pass-through=-lm compilers: Unknown arg -plugin-opt=-pass-through=-lm compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lpthread compilers: Unknown arg -plugin-opt=-pass-through=-lpthread compilers: Checking arg -plugin-opt=-pass-through=-lc compilers: Unknown arg -plugin-opt=-pass-through=-lc compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-QOJMfI/config.compilers/conftest compilers: Unknown arg /tmp/petsc-QOJMfI/config.compilers/conftest compilers: Checking arg /usr/lib/../lib64/crt1.o compilers: Unknown arg /usr/lib/../lib64/crt1.o compilers: Checking arg /usr/lib/../lib64/crti.o compilers: Unknown arg /usr/lib/../lib64/crti.o compilers: Checking arg /usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0/crtbegin.o compilers: Unknown arg /usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0/crtbegin.o compilers: Checking arg -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib compilers: Already in lflags so skipping: -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib compilers: Checking arg -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 compilers: Found library directory: -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 compilers: Checking arg -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc compilers: Found library directory: -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc compilers: Checking arg -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64/../lib64 compilers: Found library directory: -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 compilers: Checking arg -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/bin/../lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../../lib64 compilers: Found library directory: -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 compilers: Already in lflags so skipping: -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 compilers: Checking arg -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/bin/../lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../.. compilers: Found library directory: -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib compilers: Checking arg /tmp/petsc-QOJMfI/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-QOJMfI/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -rpath compilers: Found -rpath library: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -lmpi_usempif08 compilers: Already in lflags: -lmpi_usempif08 compilers: Checking arg -lmpi_usempi_ignore_tkr compilers: Already in lflags: -lmpi_usempi_ignore_tkr compilers: Checking arg -lmpi_mpifh compilers: Already in lflags: -lmpi_mpifh compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lpthread compilers: Found library: -lpthread compilers: Checking arg -lc compilers: Found system library therefore skipping: -lc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg /usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0/crtend.o compilers: Unknown arg /usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0/crtend.o compilers: Checking arg /usr/lib/../lib64/crtn.o compilers: Unknown arg /usr/lib/../lib64/crtn.o compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Libraries needed to link Fortran code with the C linker: ['-lstdc++', '-ldl', '-Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64', '-Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64', '-L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64', '-Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib', '-L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib', '-Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used with C as the linker Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status: ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lgfortran -lm -lgcc_s -lquadmath -lpthread -lstdc++ -ldl ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lgfortran -lm -lgcc_s -lquadmath -lpthread -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status ======== Checking running linked program ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lgfortran -lm -lgcc_s -lquadmath -lpthread -lstdc++ -ldl Testing executable /tmp/petsc-QOJMfI/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-QOJMfI/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-QOJMfI/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C++ as linker Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status: compilers: Fortran libraries can be used from C++ ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lgfortran -lm -lgcc_s -lquadmath -lpthread -lstdc++ -ldl ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lgfortran -lm -lgcc_s -lquadmath -lpthread -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status ======== Checking running linked program ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -o /tmp/petsc-QOJMfI/config.setCompilers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lgfortran -lm -lgcc_s -lquadmath -lpthread -lstdc++ -ldl Testing executable /tmp/petsc-QOJMfI/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-QOJMfI/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-QOJMfI/config.setCompilers/conftest ============================================================================================= TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1346) Check that Fortran can link C++ libraries ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.compilers/conftest -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilers/conftest.o /tmp/petsc-QOJMfI/config.compilers/cxxobj.o /tmp/petsc-QOJMfI/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran can link C++ functions ============================================================================================= TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:471) Determine the CXX dialect supported by the compiler(language) [and correspoding compiler option - if any]. isGNU indicates if the compiler is g++. -with--dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 for CUDA with flag: Defined "HAVE_CUDA_DIALECT_CXX14" to "1" Defined "HAVE_CUDA_DIALECT_CXX11" to "1" Executing: /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -O3 -Wno-deprecated-gpu-targets /tmp/petsc-QOJMfI/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4) + (int)std::real(I); ; return 0; } Output from compiling with -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -O3 ============================================================================================= TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1507) child config.compilers 9.143341 ============================================================================================= TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.closure/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.utilities.closure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/config.utilities.closure/conftest.c: In function 'main': /tmp/petsc-QOJMfI/config.utilities.closure/conftest.c:6:6: error: expected identifier or '(' before '^' token int (^closure)(int);; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link child config.utilities.closure 0.060274 ============================================================================================= TESTING: checkFortranTypeSizes from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:56) Check whether real*8 is supported and suggest flags which will allow support Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.compilers -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.F90 Successful compile: Source: program main real*8 variable end ============================================================================================= TESTING: checkFortranPreprocessor from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:73) Determine if Fortran handles preprocessing properly Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -g -fPIC -O2 /tmp/petsc-QOJMfI/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Output from compiling with -g -fPIC -O2 compilers: Fortran uses preprocessor ============================================================================================= TESTING: checkFortranDefineCompilerOption from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:96) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -g -fPIC -O2 -DTesting /tmp/petsc-QOJMfI/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Output from compiling with -g -fPIC -O2 -DTesting Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro ============================================================================================= TESTING: checkFortran90 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:146) Determine whether the Fortran compiler handles F90 ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.F90 Successful compile: Source: program main REAL(KIND=SELECTED_REAL_KIND(10)) d INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o -lstdc++ -ldl Fortran compiler supports F90 ============================================================================================= TESTING: checkFortran90FreeForm from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:162) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/config.compilersFortran/conftest.F90:2:132: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 1 Error: Line truncated at (1) [-Werror=line-truncation] /tmp/petsc-QOJMfI/config.compilersFortran/conftest.F90:2:110: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 1 Error: Unclassifiable statement at (1) f951: some warnings being treated as errors Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Compile failed inside link Fortran compiler does not support F90FreeForm ============================================================================================= TESTING: checkFortran2003 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:176) Determine whether the Fortran compiler handles F2003 ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.F90 Successful compile: Source: module Base_module type, public :: base_type integer :: A contains procedure, public :: Print => BasePrint end type base_type contains subroutine BasePrint(this) class(base_type) :: this end subroutine BasePrint end module Base_module program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 ============================================================================================= TESTING: checkFortran90Array from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:211) Check for F90 array interfaces Executing: uname -s stdout: Linux ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } ======== Checking running linked program ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.F90 Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o /tmp/petsc-QOJMfI/config.compilersFortran/fooobj.o -lstdc++ -ldl Testing executable /tmp/petsc-QOJMfI/config.compilersFortran/conftest to see if it can be run Executing: /tmp/petsc-QOJMfI/config.compilersFortran/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-QOJMfI/config.compilersFortran/conftest stdout: arrays [0x7fffffff6770 0x7fffffff6770 0x7fffffff6770] arrays [0x7fffffff66b0 0x7fffffff6710 0x7fffffff66b0] pointers do not match! [0x2aaaacdf5880 (nil)] [0x2aaaaab42a00] ERROR while running executable: Could not execute "['/tmp/petsc-QOJMfI/config.compilersFortran/conftest']": arrays [0x7fffffff6770 0x7fffffff6770 0x7fffffff6770] arrays [0x7fffffff66b0 0x7fffffff6710 0x7fffffff66b0] pointers do not match! [0x2aaaacdf5880 (nil)] [0x2aaaaab42a00] compilers: F90 uses a single argument for array pointers ============================================================================================= TESTING: checkFortran90AssumedType from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:298) Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -qversion ============================================================================================= TESTING: checkFortranModuleInclude from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:303) Figures out what flag is used to specify the include path for Fortran modules ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.compilersFortran/confdir -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.F90 Successful compile: Source: program main use configtest write(*,*) testint end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest -I/tmp/petsc-QOJMfI/config.compilersFortran/confdir -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o /tmp/petsc-QOJMfI/config.compilersFortran/configtest.o -lstdc++ -ldl compilers: Fortran module include flag -I found ============================================================================================= TESTING: checkFortranModuleOutput from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:369) Figures out what flag is used to specify the output path for Fortran modules ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -module /tmp/petsc-QOJMfI/config.compilersFortran/confdir -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option '-module'; did you mean '-mhle'? Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -module:/tmp/petsc-QOJMfI/config.compilersFortran/confdir -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option '-module:/tmp/petsc-QOJMfI/config.compilersFortran/confdir' Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -fmod=/tmp/petsc-QOJMfI/config.compilersFortran/confdir -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option '-fmod=/tmp/petsc-QOJMfI/config.compilersFortran/confdir' Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -J/tmp/petsc-QOJMfI/config.compilersFortran/confdir -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found ============================================================================================= TESTING: checkFortranTypeStar from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:135) Determine whether the Fortran compiler handles type(*) ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.F90 Successful compile: Source: program main interface subroutine a(b) type(*) :: b(:) end subroutine end interface end Defined "HAVE_FORTRAN_TYPE_STAR" to "1" Fortran compiler supports type(*) ============================================================================================= TESTING: checkFortranTypeInitialize from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:125) Determines if PETSc objects in Fortran are initialized by default (doesn't work with common blocks) Defined "FORTRAN_TYPE_INITIALIZE" to " = -2" Initializing Fortran objects ============================================================================================= TESTING: configureFortranFlush from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:116) ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.F90 Successful compile: Source: program main call flush(6) end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.compilersFortran/conftest -g -fPIC -O2 /tmp/petsc-QOJMfI/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_FLUSH" to "1" ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:414) Check if -MMD works for dependency generation, and add it if it does Trying FC compiler flag -MMD -MP Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -g -fPIC -O2 -MMD -MP /tmp/petsc-QOJMfI/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -g -fPIC -O2 -MMD -MP child config.compilersFortran 1.846510 ============================================================================================= TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.headers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c ======== Checking running linked program ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.headers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.headers/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.headers/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-QOJMfI/config.headers/conftest to see if it can be run Executing: /tmp/petsc-QOJMfI/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-QOJMfI/config.headers/conftest ============================================================================================= TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c ============================================================================================= TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.headers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ============================================================================================= TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.headers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory #include ^~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory #include ^~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory #include ^~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory #include ^~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory #include ^~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory #include ^~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: direct.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: direct.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: direct.h: No such file or directory #include ^~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory #include ^~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory #include ^~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory #include ^~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory #include ^~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory #include ^~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory #include ^~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory #include ^~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: direct.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: direct.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: direct.h: No such file or directory #include ^~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory #include ^~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.headers/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 4.367659 ============================================================================================= TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.headers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } ======== Checking running linked program ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.utilities.cacheDetails/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.cacheDetails/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-QOJMfI/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-QOJMfI/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-QOJMfI/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "64" child config.utilities.cacheDetails 0.314969 ============================================================================================= TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:42) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ============================================================================================= TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:48) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/config.types/conftest.c: In function 'main': /tmp/petsc-QOJMfI/config.types/conftest.c:11:1: error: unknown type name '__int64'; did you mean '__int64_t'? __int64 a;; ^~~~~~~ __int64_t Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ============================================================================================= TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:54) Checks for types associated with sizes, such as size_t. Checking for type: size_t ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ============================================================================================= TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:64) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ============================================================================================= TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:59) Checks for types associated with integers, such as int32_t. Checking for type: int32_t ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ============================================================================================= TESTING: checkPID from config.types(config/BuildSystem/config/types.py:70) Checks for pid_t, and defines it if necessary Checking for type: pid_t ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ============================================================================================= TESTING: checkUID from config.types(config/BuildSystem/config/types.py:74) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.types/conftest.c ============================================================================================= TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:81) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.types/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_C99_COMPLEX" to "1" ============================================================================================= TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:92) Check for complex numbers in namespace std ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.compilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -o /tmp/petsc-QOJMfI/config.types/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 /tmp/petsc-QOJMfI/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ============================================================================================= TESTING: checkConst from config.types(config/BuildSystem/config/types.py:103) Checks for working const, and if not found defines it to empty string ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" Defined "USING_64BIT_PTR" to "1" ============================================================================================= TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:193) ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" ============================================================================================= TESTING: checkMaxPathLen from config.types(config/BuildSystem/config/types.py:215) Determining PETSC_MAX_PATH_LEN ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.types /tmp/petsc-QOJMfI/config.types/conftest.c Defined "MAX_PATH_LEN" to "4096" child config.types 2.448858 ============================================================================================= TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.001058 ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket /usr/bin/ld: cannot find -lnsl collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lsocket /usr/bin/ld: cannot find -lnsl collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lsocket /usr/bin/ld: cannot find -lnsl collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket /usr/bin/ld: cannot find -lnsl collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lsocket /usr/bin/ld: cannot find -lnsl collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lsocket /usr/bin/ld: cannot find -lnsl collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.libraries/conftest.o: undefined reference to symbol 'log10@@GLIBC_2.2.5' /usr/bin/ld: /lib64/libm.so.6: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.libraries/conftest.o: undefined reference to symbol 'log10@@GLIBC_2.2.5' /usr/bin/ld: /lib64/libm.so.6: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.libraries/conftest.o: undefined reference to symbol 'log10@@GLIBC_2.2.5' /usr/bin/ld: /lib64/libm.so.6: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status: Checking for functions [sin floor log10 pow] in library ['m'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" CheckMath: using math library ['libm.a'] ============================================================================================= TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library ['libm.a'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" erf() found Defined "HAVE_ERF" to "1" ============================================================================================= TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library ['libm.a'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" tgamma() found Defined "HAVE_TGAMMA" to "1" ============================================================================================= TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library ['libm.a'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" lgamma() found Defined "HAVE_LGAMMA" to "1" ============================================================================================= TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library ['libm.a'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" Defined "HAVE_FENV_H" to "1" ============================================================================================= TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library ['libm.a'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" log2() found Defined "HAVE_LOG2" to "1" ============================================================================================= TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lstdc++ -ldl realtime functions are linked in by default ============================================================================================= TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -ldl -lstdc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 2.298778 ============================================================================================= TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:38) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.libraries/conftest.o: in function `_check_bgl_perfctr_void': /tmp/petsc-QOJMfI/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.libraries/conftest.o: in function `_check_bgl_perfctr_void': /tmp/petsc-QOJMfI/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' collect2: error: ld returned 1 exit status: Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.libraries/conftest.o: in function `_check_ADIOI_BGL_Open': /tmp/petsc-QOJMfI/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.libraries/conftest.o: in function `_check_ADIOI_BGL_Open': /tmp/petsc-QOJMfI/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status: Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.libraries/conftest.o: in function `_check_bgl_perfctr_void': /tmp/petsc-QOJMfI/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' collect2: error: ld returned 1 exit status Checking for functions [ADIOI_BGL_Open] in library [''] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.libraries/conftest.o: in function `_check_ADIOI_BGL_Open': /tmp/petsc-QOJMfI/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ============================================================================================= TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:99) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 0.385779 child config.atomics 0.000009 ============================================================================================= TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.types -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SYSINFO" to "1" Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated.: ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/config.functions/conftest.c:9:4: error: #error "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^~~~~ /tmp/petsc-QOJMfI/config.functions/conftest.c: In function 'main': /tmp/petsc-QOJMfI/config.functions/conftest.c:13:30: warning: implicit declaration of function 'sysinfo' [-Wimplicit-function-declaration] char buf[10]; long count=10; sysinfo(1, buf, count); ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_SYS_SYSINFO_H # include #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ============================================================================================= TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ============================================================================================= TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MEMMOVE" to "1" ============================================================================================= TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Defined "SIGNAL_CAST" to " " ============================================================================================= TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/config.functions/conftest.c: In function 'main': /tmp/petsc-QOJMfI/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be int ierr; void *p; ierr = free(p); return 0; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VA_COPY" to "1" ============================================================================================= TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _access snprintf realpath dlsym bzero _getcwd _pipe getwd uname _lseek sleep _sleep lseek usleep dlclose gethostname clock access _snprintf dlerror fork getpagesize sbreak memalign getcwd gethostbyname readlink _set_output_format PXFGETARG strcasecmp dlopen fpresetsticky drand48 socket popen getrusage _mkdir time fpsetsticky stricmp] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-QOJMfI/config.functions/conftest.c:16:6: warning: conflicting types for built-in function 'snprintf' [-Wbuiltin-declaration-mismatch] char snprintf(); ^~~~~~~~ /tmp/petsc-QOJMfI/config.functions/conftest.c:19:6: warning: conflicting types for built-in function 'bzero' [-Wbuiltin-declaration-mismatch] char bzero(); ^~~~~ /tmp/petsc-QOJMfI/config.functions/conftest.c:35:6: warning: conflicting types for built-in function 'fork' [-Wbuiltin-declaration-mismatch] char fork(); ^~~~ /tmp/petsc-QOJMfI/config.functions/conftest.c:44:6: warning: conflicting types for built-in function 'strcasecmp' [-Wbuiltin-declaration-mismatch] char strcasecmp(); ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _access(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char _pipe(); char getwd(); char uname(); char _lseek(); char sleep(); char _sleep(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char access(); char _snprintf(); char dlerror(); char fork(); char getpagesize(); char sbreak(); char memalign(); char getcwd(); char gethostbyname(); char readlink(); char _set_output_format(); char PXFGETARG(); char strcasecmp(); char dlopen(); char fpresetsticky(); char drand48(); char socket(); char popen(); char getrusage(); char _mkdir(); char time(); char fpsetsticky(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:119: warning: the `getwd' function is dangerous and should not be used. /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:77: undefined reference to `_access' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:107: undefined reference to `_getcwd' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:113: undefined reference to `_pipe' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:131: undefined reference to `_lseek' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:143: undefined reference to `_sleep' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:185: undefined reference to `_snprintf' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:209: undefined reference to `sbreak' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:239: undefined reference to `_set_output_format' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:245: undefined reference to `PXFGETARG' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:263: undefined reference to `fpresetsticky' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:293: undefined reference to `_mkdir' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:305: undefined reference to `fpsetsticky' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:311: undefined reference to `stricmp' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:119: warning: the `getwd' function is dangerous and should not be used. /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:77: undefined reference to `_access' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:107: undefined reference to `_getcwd' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:113: undefined reference to `_pipe' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:131: undefined reference to `_lseek' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:143: undefined reference to `_sleep' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:185: undefined reference to `_snprintf' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:209: undefined reference to `sbreak' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:239: undefined reference to `_set_output_format' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:245: undefined reference to `PXFGETARG' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:263: undefined reference to `fpresetsticky' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:293: undefined reference to `_mkdir' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:305: undefined reference to `fpsetsticky' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:311: undefined reference to `stricmp' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:119: warning: the `getwd' function is dangerous and should not be used. /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:77: undefined reference to `_access' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:107: undefined reference to `_getcwd' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:113: undefined reference to `_pipe' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:131: undefined reference to `_lseek' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:143: undefined reference to `_sleep' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:185: undefined reference to `_snprintf' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:209: undefined reference to `sbreak' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:239: undefined reference to `_set_output_format' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:245: undefined reference to `PXFGETARG' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:263: undefined reference to `fpresetsticky' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:293: undefined reference to `_mkdir' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:305: undefined reference to `fpsetsticky' /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.c:311: undefined reference to `stricmp' collect2: error: ld returned 1 exit status: Checking for functions [rand getdomainname realpath dlsym bzero uname usleep dlclose gethostname clock dlerror] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-QOJMfI/config.functions/conftest.c:17:6: warning: conflicting types for built-in function 'bzero' [-Wbuiltin-declaration-mismatch] char bzero(); ^~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char dlerror(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_DLERROR" to "1" Checking for functions [fork getpagesize memalign gethostbyname readlink strcasecmp dlopen drand48 socket popen getrusage time] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-QOJMfI/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'fork' [-Wbuiltin-declaration-mismatch] char fork(); ^~~~ /tmp/petsc-QOJMfI/config.functions/conftest.c:18:6: warning: conflicting types for built-in function 'strcasecmp' [-Wbuiltin-declaration-mismatch] char strcasecmp(); ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char memalign(); char gethostbyname(); char readlink(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char popen(); char getrusage(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_access] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_access' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_access' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_access' collect2: error: ld returned 1 exit status: Checking for functions [snprintf] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-QOJMfI/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'snprintf' [-Wbuiltin-declaration-mismatch] char snprintf(); ^~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_getcwd' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_getcwd' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_getcwd' collect2: error: ld returned 1 exit status: Checking for functions [_pipe] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_pipe' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_pipe' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_pipe' collect2: error: ld returned 1 exit status: Checking for functions [getwd] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used.: Checking for functions [_lseek] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_lseek' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_lseek' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_lseek' collect2: error: ld returned 1 exit status: Checking for functions [sleep] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_sleep] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_sleep' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_sleep' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_sleep' collect2: error: ld returned 1 exit status: Checking for functions [lseek] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_snprintf' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_snprintf' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_snprintf' collect2: error: ld returned 1 exit status: Checking for functions [sbreak] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `sbreak' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `sbreak' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `sbreak' collect2: error: ld returned 1 exit status: Checking for functions [getcwd] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_set_output_format' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_set_output_format' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_set_output_format' collect2: error: ld returned 1 exit status: Checking for functions [PXFGETARG] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status: Checking for functions [fpresetsticky] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpresetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `fpresetsticky' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `fpresetsticky' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `fpresetsticky' collect2: error: ld returned 1 exit status: Checking for functions [_mkdir] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_mkdir' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_mkdir' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `_mkdir' collect2: error: ld returned 1 exit status: Checking for functions [fpsetsticky] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpsetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `fpsetsticky' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `fpsetsticky' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `fpsetsticky' collect2: error: ld returned 1 exit status: Checking for functions [stricmp] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `stricmp' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `stricmp' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.functions/conftest.o: in function `main': /tmp/petsc-QOJMfI/config.functions/conftest.c:24: undefined reference to `stricmp' collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.functions/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.functions/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 5.829153 ============================================================================================= TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() child config.utilities.getResidentSetSize 0.001199 ============================================================================================= TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Checking for functions [] in library [''] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.libraries -g -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.F90 Successful compile: Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" child config.utilities.fortranCommandLine 0.203020 ============================================================================================= TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: sigfpe.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: sigfpe.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: sigfpe.h: No such file or directory #include ^~~~~~~~~~ compilation terminated.: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: fpxcp.h: No such file or directory #include ^~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: fpxcp.h: No such file or directory #include ^~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: fpxcp.h: No such file or directory #include ^~~~~~~~~ compilation terminated.: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: floatingpoint.h: No such file or directory #include ^~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: floatingpoint.h: No such file or directory #include ^~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: floatingpoint.h: No such file or directory #include ^~~~~~~~~~~~~~~~~ compilation terminated.: child config.utilities.FPTrap 0.133277 ============================================================================================= TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/config.utilities.featureTestMacros/conftest.c:4:10: fatal error: sysctl.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: stderr: In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /tmp/petsc-QOJMfI/config.utilities.featureTestMacros/conftest.c:4: /usr/include/features.h:183:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(exit, &info));; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 0.399879 ============================================================================================= TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ============================================================================================= TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ============================================================================================= TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ============================================================================================= TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -o /tmp/petsc-QOJMfI/config.utilities.missing/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 /tmp/petsc-QOJMfI/config.utilities.missing/conftest.o -lstdc++ -ldl child config.utilities.missing 2.534099 ============================================================================================= TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:34) ============================================================================================= TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:49) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Executing: uname -s stdout: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -v Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ============================================================================================= TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:94) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ============================================================================================= TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:100) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ============================================================================================= TESTING: checkSymbolResolution from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:109) Checks that dladdr() works ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.options.sharedLibraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.options.sharedLibraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(exit, &info)); ; return 0; } Defined "HAVE_DLADDR" to "1" child PETSc.options.sharedLibraries 0.144355 ============================================================================================= TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/PETSc.options.scalarTypes/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNORMAL" to "1" ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/PETSc.options.scalarTypes/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNAN" to "1" ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/PETSc.options.scalarTypes/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISINF" to "1" ============================================================================================= TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" C compiler with quadmath library Checking Fortran works with quadmath library Checking for functions [ ] in library ['quadmath'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.libraries -g -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.F90 Successful compile: Source: program main real*16 s,w; w = 2.0 ;s = cos(w) end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" Fortran works with quadmath library Checking for functions [logq] in library ['quadmath'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" Adding ['quadmath'] to LIBS Defined "HAVE_REAL___FLOAT128" to "1" Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 1.171552 ============================================================================================= TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/mkdir...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/mkdir...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/mkdir...not found Checking for program /opt/cray/alps/default/bin/mkdir...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/mkdir...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/mkdir...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mkdir...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/mkdir...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/mkdir...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/mkdir...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/mkdir...not found Checking for program /opt/esslurm/bin/mkdir...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/mkdir...not found Checking for program /usr/common/software/bin/mkdir...not found Checking for program /usr/common/nsg/bin/mkdir...not found Checking for program /opt/ovis/bin/mkdir...not found Checking for program /opt/ovis/sbin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ============================================================================================= TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/autoreconf...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/autoreconf...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/autoreconf...not found Checking for program /opt/cray/alps/default/bin/autoreconf...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/autoreconf...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/autoreconf...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/autoreconf...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/autoreconf...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/autoreconf...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/autoreconf...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/autoreconf...not found Checking for program /opt/esslurm/bin/autoreconf...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/autoreconf...not found Checking for program /usr/common/software/bin/autoreconf...not found Checking for program /usr/common/nsg/bin/autoreconf...not found Checking for program /opt/ovis/bin/autoreconf...not found Checking for program /opt/ovis/sbin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...found Executing: ['/usr/bin/autoreconf'] autoreconf test successful! Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/libtoolize...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/libtoolize...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/libtoolize...not found Checking for program /opt/cray/alps/default/bin/libtoolize...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/libtoolize...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/libtoolize...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/libtoolize...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/libtoolize...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/libtoolize...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/libtoolize...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/libtoolize...not found Checking for program /opt/esslurm/bin/libtoolize...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/libtoolize...not found Checking for program /usr/common/software/bin/libtoolize...not found Checking for program /usr/common/nsg/bin/libtoolize...not found Checking for program /opt/ovis/bin/libtoolize...not found Checking for program /opt/ovis/sbin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /usr/bin/libtoolize...found ============================================================================================= TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/bash...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/bash...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/bash...not found Checking for program /opt/cray/alps/default/bin/bash...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/bash...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/bash...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/bash...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/bash...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/bash...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/bash...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/bash...not found Checking for program /opt/esslurm/bin/bash...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/bash...not found Checking for program /usr/common/software/bin/bash...not found Checking for program /usr/common/nsg/bin/bash...not found Checking for program /opt/ovis/bin/bash...not found Checking for program /opt/ovis/sbin/bash...not found Checking for program /usr/local/bin/bash...not found Checking for program /usr/bin/bash...not found Checking for program /bin/bash...found Defined make macro "SHELL" to "/bin/bash" Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/sed...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/sed...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/sed...not found Checking for program /opt/cray/alps/default/bin/sed...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/sed...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/sed...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/sed...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/sed...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/sed...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/sed...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/sed...not found Checking for program /opt/esslurm/bin/sed...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/sed...not found Checking for program /usr/common/software/bin/sed...not found Checking for program /usr/common/nsg/bin/sed...not found Checking for program /opt/ovis/bin/sed...not found Checking for program /opt/ovis/sbin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-QOJMfI/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/mv...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/mv...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/mv...not found Checking for program /opt/cray/alps/default/bin/mv...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/mv...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/mv...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mv...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/mv...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/mv...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/mv...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/mv...not found Checking for program /opt/esslurm/bin/mv...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/mv...not found Checking for program /usr/common/software/bin/mv...not found Checking for program /usr/common/nsg/bin/mv...not found Checking for program /opt/ovis/bin/mv...not found Checking for program /opt/ovis/sbin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/cp...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/cp...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/cp...not found Checking for program /opt/cray/alps/default/bin/cp...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/cp...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/cp...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/cp...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/cp...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/cp...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/cp...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/cp...not found Checking for program /opt/esslurm/bin/cp...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/cp...not found Checking for program /usr/common/software/bin/cp...not found Checking for program /usr/common/nsg/bin/cp...not found Checking for program /opt/ovis/bin/cp...not found Checking for program /opt/ovis/sbin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/grep...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/grep...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/grep...not found Checking for program /opt/cray/alps/default/bin/grep...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/grep...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/grep...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/grep...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/grep...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/grep...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/grep...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/grep...not found Checking for program /opt/esslurm/bin/grep...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/grep...not found Checking for program /usr/common/software/bin/grep...not found Checking for program /usr/common/nsg/bin/grep...not found Checking for program /opt/ovis/bin/grep...not found Checking for program /opt/ovis/sbin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/rm...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/rm...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/rm...not found Checking for program /opt/cray/alps/default/bin/rm...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/rm...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/rm...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/rm...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/rm...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/rm...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/rm...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/rm...not found Checking for program /opt/esslurm/bin/rm...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/rm...not found Checking for program /usr/common/software/bin/rm...not found Checking for program /usr/common/nsg/bin/rm...not found Checking for program /opt/ovis/bin/rm...not found Checking for program /opt/ovis/sbin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/diff...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/diff...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/diff...not found Checking for program /opt/cray/alps/default/bin/diff...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/diff...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/diff...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/diff...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/diff...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/diff...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/diff...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/diff...not found Checking for program /opt/esslurm/bin/diff...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/diff...not found Checking for program /usr/common/software/bin/diff...not found Checking for program /usr/common/nsg/bin/diff...not found Checking for program /opt/ovis/bin/diff...not found Checking for program /opt/ovis/sbin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-QOJMfI/config.programs/diff1" "/tmp/petsc-QOJMfI/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of the specific search path Warning accessing /usr/ucb gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Warning accessing /usr/usb gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Defined make macro "PYTHON" to "/usr/bin/python" Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/m4...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/m4...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/m4...not found Checking for program /opt/cray/alps/default/bin/m4...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/m4...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/m4...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/m4...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/m4...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/m4...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/m4...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/m4...not found Checking for program /opt/esslurm/bin/m4...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/m4...not found Checking for program /usr/common/software/bin/m4...not found Checking for program /usr/common/nsg/bin/m4...not found Checking for program /opt/ovis/bin/m4...not found Checking for program /opt/ovis/sbin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 2.283449 ============================================================================================= TESTING: consistencyChecks from config.packages.make(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.make(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default ============================================================================================= TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:96) Check Guesses for GNU make Executing: gmake --version stdout: GNU Make 4.2.1 Built for x86_64-suse-linux-gnu Copyright (C) 1988-2016 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/gmake...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/gmake...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/gmake...not found Checking for program /opt/cray/alps/default/bin/gmake...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/gmake...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/gmake...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/gmake...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/gmake...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/gmake...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/gmake...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/gmake...not found Checking for program /opt/esslurm/bin/gmake...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/gmake...not found Checking for program /usr/common/software/bin/gmake...not found Checking for program /usr/common/nsg/bin/gmake...not found Checking for program /opt/ovis/bin/gmake...not found Checking for program /opt/ovis/sbin/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...found Defined make macro "MAKE" to "/usr/bin/gmake" Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/make...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/make...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/make...not found Checking for program /opt/cray/alps/default/bin/make...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/make...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/make...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/make...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/make...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/make...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/make...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/make...not found Checking for program /opt/esslurm/bin/make...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/make...not found Checking for program /usr/common/software/bin/make...not found Checking for program /usr/common/nsg/bin/make...not found Checking for program /opt/ovis/bin/make...not found Checking for program /opt/ovis/sbin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE_USER" to "make" ============================================================================================= TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:150) Setup other GNU make stuff Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "--output-sync=recurse" ============================================================================================= TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:197) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 80 cores: using make_np = 44 using user-provided make_np = 8 Defined make macro "MAKE_NP" to "8" Defined make macro "MAKE_TEST_NP" to "32" Defined make macro "MAKE_LOAD" to "113.6" Defined make macro "NPMAX" to "80" child config.packages.make 0.059611 ============================================================================================= TESTING: consistencyChecks from config.packages.X(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.X(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.X(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Compiler specific search X: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.libraries/conftest.o: in function `_check_XSetWMName': /tmp/petsc-QOJMfI/config.libraries/conftest.c:5: undefined reference to `XSetWMName' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.libraries/conftest.o: in function `_check_XSetWMName': /tmp/petsc-QOJMfI/config.libraries/conftest.c:5: undefined reference to `XSetWMName' collect2: error: ld returned 1 exit status: Checking for functions [XSetWMName] in library [] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.libraries/conftest.o: in function `_check_XSetWMName': /tmp/petsc-QOJMfI/config.libraries/conftest.c:5: undefined reference to `XSetWMName' collect2: error: ld returned 1 exit status Checking for library in Compiler specific search X: ['libX11.a'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['libX11.a'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lX11 -lquadmath -lstdc++ -ldl Defined "HAVE_LIBX11" to "1" Checking for optional headers [] in Compiler specific search X: ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Found header files [] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking for headers ['X11/Xlib.h'] in Compiler specific search X: ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['X11/Xlib.h'] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['X11/Xlib.h'] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkVersion from config.packages.X(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version For x unable to run preprocessor to obtain version information, skipping version check ============================================================================================= TESTING: checkSharedLibrary from config.packages.X(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.X 0.429263 ============================================================================================= TESTING: consistencyChecks from config.packages.hwloc(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.hwloc 0.001481 ============================================================================================= TESTING: consistencyChecks from config.packages.valgrind(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search VALGRIND: ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Found header files [] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking for headers ['valgrind/valgrind.h'] in Compiler specific search VALGRIND: ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: valgrind/valgrind.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: valgrind/valgrind.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: valgrind/valgrind.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~~~ compilation terminated.: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Found header files [] in ['/usr/local/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers -I/usr/local/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: valgrind/valgrind.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: valgrind/valgrind.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: valgrind/valgrind.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~~~ compilation terminated.: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Found header files [] in ['/usr/local/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers -I/usr/local/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: valgrind/valgrind.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: valgrind/valgrind.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: valgrind/valgrind.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~~~ compilation terminated.: VALGRIND: SearchDir DirPath not found.. skipping: /opt/local Executing: uname -s stdout: Linux Detected Linux OS ============================================================================================= It appears you do not have valgrind installed on your system. We HIGHLY recommend you install it from www.valgrind.org Or install valgrind-devel or equivalent using your package manager. Then rerun ./configure ============================================================================================= child config.packages.valgrind 0.159058 ============================================================================================= TESTING: consistencyChecks from config.packages.thrust(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.thrust 0.001188 ============================================================================================= TESTING: consistencyChecks from config.packages.cuda(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.cuda(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.cuda(config/BuildSystem/config/packages/cuda.py:107) Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc...found Defined make macro "SYSTEMNVCC" to "/usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc" ================================================================================== Checking for a functional cuda CUDA: UserSpecified DirPath not found.. skipping: /usr/common/software/sles15_cgpu/cuda/11.1.1/lib Checking for library in User specified root directory CUDA: ['/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64/libcufft.a', 'libcublas.a', 'libcudart.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a'] Contents: ['include', 'README', 'DOCS', 'nsightee_plugins', 'bin', 'libnvvp', 'samples', 'nsight-compute-2020.2.1', 'tools', 'extras', 'lib64', 'nvvm', 'share', 'pkgconfig', 'targets', 'nvml', 'compute-sanitizer', 'nsight-systems-2020.3.4', 'EULA.txt', 'src'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [cublasInit cufftDestroy] in library ['/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64/libcufft.a', 'libcublas.a', 'libcudart.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } int main() { _check_cublasInit(); _check_cufftDestroy();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -Wl,-rpath,/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -L/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -lcufft -lcublas -lcudart -lcusparse -lcusolver -lcurand -lquadmath -lstdc++ -ldl Defined "HAVE_LIBCUFFT" to "1" Defined "HAVE_LIBCUBLAS" to "1" Defined "HAVE_LIBCUDART" to "1" Defined "HAVE_LIBCUSPARSE" to "1" Defined "HAVE_LIBCUSOLVER" to "1" Defined "HAVE_LIBCURAND" to "1" Checking for functions [cusolverDnDpotri] in library ['/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64/libcufft.a', 'libcublas.a', 'libcudart.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cusolverDnDpotri(); static void _check_cusolverDnDpotri() { cusolverDnDpotri(); } int main() { _check_cusolverDnDpotri();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -Wl,-rpath,/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -L/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -lcufft -lcublas -lcudart -lcusparse -lcusolver -lcurand -lquadmath -lstdc++ -ldl Defined "HAVE_CUSOLVERDNDPOTRI" to "1" Checking for optional headers [] in User specified root directory CUDA: ['/usr/common/software/sles15_cgpu/cuda/11.1.1/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/common/software/sles15_cgpu/cuda/11.1.1/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Found header files [] in ['/usr/common/software/sles15_cgpu/cuda/11.1.1/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking for headers ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'curand.h', 'thrust/version.h'] in User specified root directory CUDA: ['/usr/common/software/sles15_cgpu/cuda/11.1.1/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'curand.h', 'thrust/version.h'] in ['/usr/common/software/sles15_cgpu/cuda/11.1.1/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/common/software/sles15_cgpu/cuda/11.1.1/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS ['/usr/common/software/sles15_cgpu/cuda/11.1.1/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS ['/usr/common/software/sles15_cgpu/cuda/11.1.1/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS ['/usr/common/software/sles15_cgpu/cuda/11.1.1/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS ['/usr/common/software/sles15_cgpu/cuda/11.1.1/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS ['/usr/common/software/sles15_cgpu/cuda/11.1.1/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'curand.h', 'thrust/version.h'] in ['/usr/common/software/sles15_cgpu/cuda/11.1.1/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking for size of type: teststruct ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -O3 -Wno-deprecated-gpu-targets /tmp/petsc-QOJMfI/config.types/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include typedef struct {double a; int b;} teststruct; char assert_sizeof[(sizeof(teststruct)==16)*2-1]; Checking for size of type: teststruct ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include typedef struct {double a; int b;} teststruct; char assert_sizeof[(sizeof(teststruct)==16)*2-1]; Checking if sizeof(void*) in CUDA is the same as with regular compiler Checking for size of type: void * ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -O3 -Wno-deprecated-gpu-targets /tmp/petsc-QOJMfI/config.types/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/extras/demo_suite/deviceQuery...found Defined make macro "DEVICEQUERY" to "/usr/common/software/sles15_cgpu/cuda/11.1.1/extras/demo_suite/deviceQuery" Running Executable with threads to time it out at 60 Executing: /usr/common/software/sles15_cgpu/cuda/11.1.1/extras/demo_suite/deviceQuery | grep "CUDA Capability" deviceQuery failed ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc -c -o /tmp/petsc-QOJMfI/config.packages.cuda/conftest.o -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.packages.cuda -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -O3 -gencode arch=compute_80,code=sm_80 -Wno-deprecated-gpu-targets /tmp/petsc-QOJMfI/config.packages.cuda/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined "HAVE_CUDA" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "cuda.h" ;petscpkgver(CUDA_VERSION); Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.packages.cuda -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include /tmp/petsc-QOJMfI/config.packages.cuda/conftest.c For cuda need 7.5 <= 11.1 <= Defined "HAVE_CUDA_VERSION_11PLUS" to "1" Executing: /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -O3 -gencode arch=compute_80,code=sm_80 --dryrun dummy.cu 2>&1 | grep D__CUDACC__ | head -1 | cut -f2 -d" " stdout: gcc Determined the compiler nvcc uses is gcc PETSc C compiler /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc PETSc C++ compiler /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx No CUDA_CXXFLAGS available Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and ============================================================================================= TESTING: checkVersion from config.packages.cuda(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "cuda.h" ;petscpkgver(CUDA_VERSION); Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.packages.cuda -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include /tmp/petsc-QOJMfI/config.packages.cuda/conftest.c For cuda need 7.5 <= 11.1 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.cuda(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.cuda 3.418098 ============================================================================================= TESTING: consistencyChecks from config.packages.OpenMPI(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.001128 ============================================================================================= TESTING: consistencyChecks from config.packages.MPICH(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.000999 ============================================================================================= TESTING: consistencyChecks from config.packages.MPI(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:697) ================================================================================== Checking for a functional MPI Checking for library in User specified root directory MPI: [] Contents: ['include', 'bin', 'etc', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Checking for optional headers [] in User specified root directory MPI: ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Found header files [] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking for headers ['mpi.h'] in User specified root directory MPI: ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.packages.cuda -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['mpi.h'] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Defined "HAVE_MPI_F90MODULE_VISIBILITY" to "1" ============================================================================================= TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:550) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c:4:25: error: 'I_MPI_VERSION' undeclared here (not in a function); did you mean 'MPI_VERSION'? const char *mpich_ver = I_MPI_VERSION; ^~~~~~~~~~~~~ MPI_VERSION Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c:4:17: error: 'I_MPI_NUMVERSION' undeclared here (not in a function); did you mean 'MPI_SUBVERSION'? int mpich_ver = I_MPI_NUMVERSION; ^~~~~~~~~~~~~~~~ MPI_SUBVERSION Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c:4:17: error: 'MVAPICH2_NUMVERSION' undeclared here (not in a function); did you mean 'MPI_SUBVERSION'? int mpich_ver = MVAPICH2_NUMVERSION; ^~~~~~~~~~~~~~~~~~~ MPI_SUBVERSION Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c:4:17: error: 'MPICH_NUMVERSION' undeclared here (not in a function); did you mean 'MPI_SUBVERSION'? int mpich_ver = MPICH_NUMVERSION; ^~~~~~~~~~~~~~~~ MPI_SUBVERSION Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.packages.cuda -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Defined "HAVE_OMPI_MAJOR_VERSION" to "4" Defined "HAVE_OMPI_MINOR_VERSION" to "0" Defined "HAVE_OMPI_RELEASE_VERSION" to "3" Executing: uname -s stdout: Linux ============================================================================================= TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:332) Check for functions added to the interface in MPI-2 ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={MPI_INT,MPI_DOUBLE}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c: In function 'main': /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c:6:1: warning: 'MPI_Comm_errhandler_fn' is deprecated: MPI_Comm_errhandler_fn was deprecated in MPI-2.2; use MPI_Comm_errhandler_function instead [-Wdeprecated-declarations] MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ^~~~~~~~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_ONE_SIDED" to "1" ============================================================================================= TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:379) Check for functions added to the interface in MPI-3 ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Win_allocate(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_attach(win,baseptr,size)); if (MPI_Win_create_dynamic(MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_FEATURE_DYNAMIC_WINDOW" to "1" ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MPIX_CUDA_AWARE_SUPPORT) && MPIX_CUDA_AWARE_SUPPORT #else #error This OpenMPI is not CUDA-aware #endif int main() { ; return 0; } Defined "HAVE_MPI_GPU_AWARE" to "1" ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_RGET" to "1" ============================================================================================= TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:177) Checking for location of mpiexec Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/srun...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/srun...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/srun...not found Checking for program /opt/cray/alps/default/bin/srun...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/srun...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/srun...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/srun...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/srun...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/srun...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/srun...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/srun...not found Checking for program /opt/esslurm/bin/srun...found Defined make macro "MPIEXEC" to "srun -G 1 -c 10" Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/srun...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/srun...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/srun...not found Checking for program /opt/cray/alps/default/bin/srun...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/srun...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/srun...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/srun...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/srun...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/srun...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/srun...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/srun...not found Checking for program /opt/esslurm/bin/srun...found Defined make macro "MPIEXECEXECUTABLE" to "/opt/esslurm/bin/srun -G 1 -c 10" Running Executable with threads to time it out at 120 Executing: srun -G 1 -c 10 -n 1 printenv stdout: autologout=30 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_x86_64=9.0 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_x86_skylake=8.2 7.1 PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_haswell=90 LS_COLORS=no=00:fi=00:di=01;34:ln=00;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=41;33;01:ex=00;32:*.cmd=00;32:*.exe=01;32:*.com=01;32:*.bat=01;32:*.btm=01;32:*.dll=01;32:*.tar=00;31:*.tbz=00;31:*.tgz=00;31:*.rpm=00;31:*.deb=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.lzma=00;31:*.zip=00;31:*.zoo=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.tb2=00;31:*.tz2=00;31:*.tbz2=00;31:*.xz=00;31:*.avi=01;35:*.bmp=01;35:*.dl=01;35:*.fli=01;35:*.gif=01;35:*.gl=01;35:*.jpg=01;35:*.jpeg=01;35:*.mkv=01;35:*.mng=01;35:*.mov=01;35:*.mp4=01;35:*.mpg=01;35:*.pcx=01;35:*.pbm=01;35:*.pgm=01;35:*.png=01;35:*.ppm=01;35:*.svg=01;35:*.tga=01;35:*.tif=01;35:*.webm=01;35:*.webp=01;35:*.wmv=01;35:*.xbm=01;35:*.xcf=01;35:*.xpm=01;35:*.aiff=00;32:*.ape=00;32:*.au=00;32:*.flac=00;32:*.m4a=00;32:*.mid=00;32:*.mp3=00;32:*.mpc=00;32:*.ogg=00;32:*.voc=00;32:*.wav=00;32:*.wma=00;32:*.wv=00;32: LD_LIBRARY_PATH=/opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/lib64:/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib:/usr/common/software/sles15_cgpu/ucx/1.8.1/lib:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/comm_libs/nvshmem/lib:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/comm_libs/nccl/lib:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/math_libs/lib64:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/lib:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/lib64:/usr/common/software/sles15_cgpu/cuda/11.1.1/extras/CUPTI/lib64:/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64:/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64/compat:/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64:/opt/esslurm/lib64:/usr/lib64:/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64/stubs:/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib PE_ATP_PKGCONFIG_VARIABLES=ATP_CFLAGS_@prgenv@_@language@ PE_LIBSCI_DEFAULT_VOLATILE_PRGENV=CRAY CRAYCLANG GNU INTEL CSHRCREAD=true PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_sandybridge=8.2 7.1 PE_TPSL_64_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 HOSTTYPE=x86_64 SRUN_DEBUG=3 SLURM_STEP_ID=3 UCX_TLS=rc,cuda_copy,gdr_copy,cuda_ipc,sm,dc,self ATP_IGNORE_SIGTERM=1 PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_skylake=8.2 7.1 XTPE_NETWORK_TARGET=aries CRAY_UDREG_POST_LINK_OPTS=-L/opt/cray/udreg/2.3.2-7.0.1.1_3.49__g8175d3d.ari/lib64 PE_TPSL_DEFAULT_GENCOMPS_CRAYCLANG_haswell=90 SLURM_NODEID=0 PE_FFTW_DEFAULT_TARGET_ivybridge=ivybridge PE_FFTW_DEFAULT_TARGET_share=share PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_x86_skylake=9.0 SLURM_TASK_PID=66919 PE_TRILINOS_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 PRGENVMODULES=PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pgi PKG_CONFIG_PATH_DEFAULT=/opt/cray/pe/papi/5.7.0.2/lib64/pkgconfig PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_sandybridge=19.0 PE_LIBSCI_OMP_REQUIRES= PE_TRILINOS_DEFAULT_GENCOMPS_GNU_x86_64=82 71 SSH_CONNECTION=128.55.210.212 52220 128.55.209.23 22 PE_MPICH_NV_LIBS_nvidia35=-lcudart PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_x86_64=90 LESSCLOSE=lessclose.sh %s %s CRAY_LD_LIBRARY_PATH=/opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/lib64:/opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/lib64:/opt/cray/xpmem/2.2.20-7.0.1.1_4.21__g0475745.ari/lib64:/opt/cray/dmapp/7.1.1-7.0.1.1_4.62__g38cf134.ari/lib64:/opt/cray/pe/pmi/5.0.14/lib64:/opt/cray/ugni/6.0.14.0-7.0.1.1_7.51__ge78e5b0.ari/lib64:/opt/cray/udreg/2.3.2-7.0.1.1_3.49__g8175d3d.ari/lib64:/opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib PE_SMA_DEFAULT_DIR_PGI_DEFAULT64=64 PE_MPICH_DEFAULT_DIR_CRAY_DEFAULT64=64 PE_PETSC_DEFAULT_GENCOMPS_CRAY_haswell=90 PE_PAPI_DEFAULT_ACCEL_FAMILY_LIBS_nvidia=,-lcupti,-lcudart,-lcuda PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_sandybridge=9.0 XKEYSYMDB=/usr/X11R6/lib/X11/XKeysymDB SLURM_PRIO_PROCESS=0 PE_TRILINOS_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/trilinos/12.14.1.0/@PRGENV@/@PE_TRILINOS_DEFAULT_GENCOMPS@/@PE_TRILINOS_DEFAULT_TARGET@/lib/pkgconfig PE_ENV=GNU PE_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_x86_skylake=190 PE_LIBSCI_DEFAULT_GENCOMPS_GNU_x86_64=81 71 PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_skylake=82 71 PE_PETSC_DEFAULT_GENCOMPILERS_CRAYCLANG_haswell=9.0 PE_PETSC_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 CRAYCLANG CRAYCLANG64 GNU GNU64 INTEL INTEL64 PE_PRODUCT_LIST=CRAY_RCA:CRAY_ALPS:DVS:CRAY_XPMEM:CRAY_DMAPP:CRAY_PMI:CRAY_UGNI:CRAY_UDREG:CRAY_LIBSCI:CRAYPE:GNU:GCC PE_TPSL_64_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI CRAY_DMAPP_INCLUDE_OPTS=-I/opt/cray/dmapp/7.1.1-7.0.1.1_4.62__g38cf134.ari/include -I/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.35__g3b1768f.ari/include LIBGL_ALWAYS_INDIRECT=1 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 7.1 PE_NETCDF_DEFAULT_GENCOMPILERS_GNU=8.2 7.1 _=/opt/esslurm/bin/srun PE_LIBSCI_MODULE_NAME=cray-libsci/19.06.1 PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_skylake=82 71 PE_LIBSCI_GENCOMPILERS_CRAY_x86_64=9.0 TZ=US/Pacific PE_MPICH_DEFAULT_DIR_CRAYCLANG_DEFAULT64=64 SLURM_SUBMIT_DIR=/global/u2/m/madams/petsc PE_TPSL_DEFAULT_GENCOMPS_CRAYCLANG_x86_skylake=90 PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_skylake=90 PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_x86_skylake=19.0 PE_TPSL_64_DEFAULT_GENCOMPS_GNU_haswell=82 71 WINDOWMANAGER=/usr/bin/gnome PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_skylake=9.0 LESS=-M -I -R PE_LIBSCI_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 PE_PETSC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/petsc/3.11.2.0/complex/@PRGENV@/@PE_PETSC_DEFAULT_GENCOMPS@/@PE_PETSC_DEFAULT_TARGET@/lib/pkgconfig DISPLAY=cori05:32.0 HOSTNAME=cori05 PE_TPSL_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_skylake=9.0 PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/netcdf-hdf5parallel/4.6.3.2/@PRGENV@/@PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig PE_TPSL_DEFAULT_GENCOMPILERS_CRAYCLANG_sandybridge=9.0 OLDPWD=/global/homes/m/madams PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_x86_skylake=9.0 PE_TPSL_DEFAULT_GENCOMPS_GNU_haswell=82 71 CSHEDIT=emacs PE_TPSL_DEFAULT_GENCOMPILERS_GNU_haswell=8.2 7.1 SLURM_CPUS_PER_TASK=10 SLURM_STEPID=3 SLURM_SRUN_COMM_HOST=128.55.144.54 CRAY_RCA_INCLUDE_OPTS=-I/opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/include -I/opt/cray/krca/2.2.6-7.0.1.1_5.46__gb641b12.ari/include -I/opt/cray-hss-devel/9.0.0/include SLURM_DISTRIBUTION=block PE_TPSL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/tpsl/19.06.1/@PRGENV@/@PE_TPSL_DEFAULT_GENCOMPS@/@PE_TPSL_DEFAULT_TARGET@/lib/pkgconfig GPG_TTY=/dev/pts/1 LESS_ADVANCED_PREPROCESSOR=no PE_FFTW_DEFAULT_TARGET_x86_64=x86_64 PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_x86_64=19.0 PE_PETSC_DEFAULT_GENCOMPS_CRAYCLANG_x86_skylake=90 COLORTERM=1 ZAP_LIBPATH=/opt/ovis/lib64/ovis-ldms DVS_MAXNODES=1__ CUDA_PATH=/usr/common/software/sles15_cgpu/cuda/11.1.1 PETSC_ARCH=arch-cori-gpu-opt-kokkos-gcc PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU PE_HDF5_DEFAULT_VOLATILE_PRGENV=GNU FPATH=:/opt/cray/pe/modules/3.2.11.4/init/sh_funcs/no_redirect:/opt/cray/pe/modules/3.2.11.4/init/sh_funcs/no_redirect:/opt/cray/pe/modules/3.2.11.4/init/sh_funcs/no_redirect PE_TPSL_64_DEFAULT_GENCOMPS_CRAYCLANG_x86_skylake=90 PE_TPSL_64_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/tpsl/19.06.1/@PRGENV@64/@PE_TPSL_64_DEFAULT_GENCOMPS@/@PE_TPSL_64_DEFAULT_TARGET@/lib/pkgconfig NVHPC_VERSION=20.11 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAYCLANG_sandybridge=9.0 PE_PKGCONFIG__PRODUCTS=PE_ATP PE_PETSC_DEFAULT_GENCOMPS_GNU_sandybridge=82 71 PE_NETCDF_HDF5PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5_PARALLEL PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_x86_64=9.0 gcc_already_loaded=1 ATP_CFLAGS= PE_LIBSCI_GENCOMPILERS_CRAYCLANG_x86_64=9.0 PE_FFTW_DEFAULT_TARGET_x86_skylake=x86_skylake PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_x86_skylake=19.0 SLURM_PROCID=0 PE_MPICH_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.7.10/gni/mpich-@PRGENV@@PE_MPICH_DEFAULT_DIR_DEFAULT64@/@PE_MPICH_DEFAULT_GENCOMPS@/lib/pkgconfig SLURM_JOB_GID=1013302 MACHTYPE=x86_64-suse-linux PE_FFTW_DEFAULT_TARGET_broadwell=broadwell PE_PAPI_DEFAULT_ACCEL_LIBS= PE_TRILINOS_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 GNU_VERSION=8.3.0 SLURMD_NODENAME=cgpu11 PE_HDF5_DEFAULT_GENCOMPILERS_GNU=8.2 7.1 PE_SMA_DEFAULT_COMPFLAG= PE_PKGCONFIG_PRODUCTS=PE_LIBSCI PE_CRAY_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.11.1.1/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/netcdf-hdf5parallel/4.6.3.2/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/netcdf/4.6.3.2/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/hdf5-parallel/1.10.5.2/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/hdf5/1.10.5.2/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/ga/5.3.0.10/CRAY/8.6/lib/pkgconfig PE_PETSC_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_x86_skylake=90 HUGETLB_VERBOSE=0 PE_PETSC_DEFAULT_GENCOMPS_INTEL_sandybridge=190 PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_sandybridge=190 SSH_AUTH_SOCK=/tmp/ssh-Swn8Oq40d9/agent.42495 PE_LIBSCI_GENCOMPILERS_GNU_x86_64=8.1 7.1 MINICOM=-c on DVS_VERSION=0.9.0 SLURM_TASKS_PER_NODE=1 PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS_GNU= PE_MPICH_PKGCONFIG_VARIABLES=PE_MPICH_NV_LIBS_@accelerator@:PE_MPICH_ALTERNATE_LIBS_@multithreaded@:PE_MPICH_ALTERNATE_LIBS_@dpm@ PE_PARALLEL_NETCDF_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL QT_SYSTEM_DIR=/usr/share/desktop-data OSTYPE=linux ATP_MRNET_COMM_PATH=/opt/cray/pe/atp/2.1.3/libexec/atp_mrnet_commnode_wrapper PE_MPICH_NV_LIBS= PE_NETCDF_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5 PE_FFTW2_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_64=82 71 XDG_SESSION_ID=100825 PE_TPSL_DEFAULT_GENCOMPS_GNU_sandybridge=82 71 PE_TPSL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI SLURM_NNODES=1 USER=madams PAGER=less SLURM_LAUNCH_NODE_IPADDR=128.55.144.54 PE_NETCDF_DEFAULT_GENCOMPS_GNU= MODULE_VERSION=3.2.11.4 PE_HDF5_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/hdf5/1.10.5.2/@PRGENV@/@PE_HDF5_DEFAULT_GENCOMPS@/lib/pkgconfig CRAY_ALPS_POST_LINK_OPTS=-L/opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/lib64 PE_TPSL_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 MAN_POSIXLY_CORRECT=1 SHMEM_ABORT_ON_ERROR=1 PE_PKG_CONFIG_PATH=/opt/cray/pe/valgrind4hpc/2.8.1/lib/pkgconfig:/opt/cray/pe/cti/1.0.9/lib/pkgconfig:/opt/cray/pe/cti/1.0.7/lib/pkgconfig:/opt/cray/pe/cti/2.8.1/lib/pkgconfig:/opt/cray/pe/atp/3.8.1/lib/pkgconfig PE_CRAYCLANG_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.11.1.1/CRAYCLANG/9.0/lib/pkgconfig:/opt/cray/pe/netcdf-hdf5parallel/4.6.3.2/CRAYCLANG/9.0/lib/pkgconfig:/opt/cray/pe/netcdf/4.6.3.2/CRAYCLANG/9.0/lib/pkgconfig:/opt/cray/pe/hdf5-parallel/1.10.5.2/CRAYCLANG/9.0/lib/pkgconfig:/opt/cray/pe/hdf5/1.10.5.2/CRAYCLANG/9.0/lib/pkgconfig PE_MPICH_DEFAULT_GENCOMPILERS_CRAY=9.0 TOOLMODULES=apprentice:apprentice2:atp:chapel:cray-lgdb:cray-snplauncher:craypat:craypkg-gen:ddt:gdb:iobuf:papi:perftools:perftools-lite:stat:totalview:xt-craypat:xt-lgdb:xt-papi:xt-totalview DVS_INCLUDE_OPTS=-I/opt/cray/dvs/2.12_2.2.167-7.0.1.1_17.2__ge473d3a2/include PE_LIBSCI_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH OMPI_CXX=g++ SLURM_STEP_TASKS_PER_NODE=1 PE_LIBSCI_GENCOMPILERS_INTEL_x86_64=16.0 PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 7.1 PE_GA_DEFAULT_GENCOMPS_GNU=82 73 PE_INTEL_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.11.1.1/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/netcdf-hdf5parallel/4.6.3.2/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/netcdf/4.6.3.2/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/mpt/7.7.10/gni/mpich-INTEL/16.0/lib/pkgconfig:/opt/cray/pe/hdf5-parallel/1.10.5.2/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/hdf5/1.10.5.2/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/ga/5.3.0.10/INTEL/18.0/lib/pkgconfig KSH_AUTOLOAD=1 PE_LIBSCI_VOLATILE_PRGENV=CRAY CRAYCLANG GNU INTEL PE_SMA_DEFAULT_PKGCONFIG_VARIABLES=PE_SMA_COMPFLAG_@prgenv@ PE_TPSL_64_DEFAULT_GENCOMPS_CRAYCLANG_sandybridge=90 PE_PETSC_DEFAULT_GENCOMPILERS_CRAYCLANG_sandybridge=9.0 PKGCONFIG_ENABLED=1 CRAY_UGNI_POST_LINK_OPTS=-L/opt/cray/ugni/6.0.14.0-7.0.1.1_7.51__ge78e5b0.ari/lib64 MORE=-sl PE_PAPI_DEFAULT_ACCEL_LIBS_nvidia35=,-lcupti,-lcudart,-lcuda PE_MPICH_DEFAULT_GENCOMPILERS_CRAYCLANG=9.0 SLURM_GPUS=1 LAND_INC=-DHAVE_VTUNE -I/include -I/include PE_TRILINOS_DEFAULT_GENCOMPILERS_INTEL_x86_64=19.0 PE_TPSL_64_DEFAULT_GENCOMPS_CRAYCLANG_haswell=90 GCC_VERSION=8.3.0 CRAY_LIBSCI_BASE_DIR=/opt/cray/pe/libsci/19.06.1 PE_NETCDF_HDF5PARALLEL_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL PE_SMA_DEFAULT_DIR_CRAY_DEFAULT64=64 PWD=/global/homes/m/madams/petsc TARGETMODULES=craype-abudhabi:craype-abudhabi-cu:craype-accel-host:craype-accel-nvidia20:craype-accel-nvidia30:craype-accel-nvidia35:craype-barcelona:craype-broadwell:craype-haswell:craype-hugepages128K:craype-hugepages128M:craype-hugepages16M:craype-hugepages256M:craype-hugepages2M:craype-hugepages32M:craype-hugepages4M:craype-hugepages512K:craype-hugepages512M:craype-hugepages64M:craype-hugepages8M:craype-intel-knc:craype-interlagos:craype-interlagos-cu:craype-istanbul:craype-ivybridge:craype-mc12:craype-mc8:craype-mic-knl:craype-network-aries:craype-network-gemini:craype-network-infiniband:craype-network-none:craype-network-seastar:craype-sandybridge:craype-shanghai:craype-target-compute_node:craype-target-local_host:craype-target-native:craype-xeon:xtpe-barcelona:xtpe-interlagos:xtpe-interlagos-cu:xtpe-istanbul:xtpe-mc12:xtpe-mc8:xtpe-network-gemini:xtpe-network-seastar:xtpe-shanghai:xtpe-target-native:xtpe-xeon PE_MPICH_NV_LIBS_nvidia20=-lcudart LINES=102 PAT_RT_HWPC=1 SLURM_JOB_NODELIST=cgpu11 GCC_ROOT=/usr/common/software/sles15_cgpu/gcc/8.3.0 HOME=/global/homes/m/madams SLURM_CLUSTER_NAME=escori CRAY_PMI_INCLUDE_OPTS=-I/opt/cray/pe/pmi/5.0.14/include PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_haswell=9.0 PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_sandybridge=19.0 PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_haswell=8.2 7.1 PELOCAL_PRGENV=true PE_PETSC_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_skylake=9.0 PE_PETSC_DEFAULT_GENCOMPS_CRAYCLANG_haswell=90 PE_TPSL_DEFAULT_GENCOMPS_CRAYCLANG_sandybridge=90 PE_TPSL_64_DEFAULT_GENCOMPS_GNU_sandybridge=82 71 NERSC_HOST=cori CMAKE_PREFIX_PATH=/usr/common/software/sles15_cgpu/cuda/11.1.1 PE_LIBSCI_REQUIRED_PRODUCTS=PE_MPICH craype_already_loaded=0 ATP_HOME=/opt/cray/pe/atp/2.1.3 SLURM_NODELIST=cgpu11 GIT_PS1_SHOWDIRTYSTATE=1 HOST=cori05 SSH_CLIENT=128.55.210.212 52220 22 PE_PETSC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI:PE_HDF5_PARALLEL:PE_TPSL CUDA_HOME=/usr/common/software/sles15_cgpu/cuda/11.1.1 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_haswell=19.0 XNLSPATH=/usr/share/X11/nls PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_x86_64=9.0 CPATH=/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/comm_libs/nvshmem/include:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/comm_libs/nccl/include:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/math_libs/include PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_x86_64=19.0 PE_LIBSCI_PKGCONFIG_LIBS=libsci_mpi:libsci PE_PARALLEL_NETCDF_DEFAULT_GENCOMPILERS_GNU=8.2 7.3 PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_sandybridge=90 PE_MPICH_DEFAULT_GENCOMPS_CRAY=90 PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_haswell=19.0 SLURM_UMASK=0007 SDK_HOME=/usr/lib64/jvm/java PE_LIBSCI_OMP_REQUIRES_openmp=_mp SLURM_JOB_CPUS_PER_NODE=10 BASH_ENV=/global/homes/m/madams/.bashrc XDG_DATA_DIRS=/usr/share SLURM_TOPOLOGY_ADDR=cgpu11 SVN_EDITOR=vim PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPILERS_GNU=8.2 7.1 PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_haswell=190 CRAY_RCA_POST_LINK_OPTS=-L/opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/lib64 -lrca PE_TPSL_DEFAULT_GENCOMPS_CRAY_sandybridge=90 LIBGL_DEBUG=quiet CRAY_LIBSCI_DIR=/opt/cray/pe/libsci/19.06.1 SLURM_WORKING_CLUSTER=escori:corique01-144:6820:8960:109 PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_GNU= PE_LIBSCI_DEFAULT_OMP_REQUIRES= PE_LIBSCI_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/libsci/19.06.1/@PRGENV@/@PE_LIBSCI_GENCOMPS@/@PE_LIBSCI_TARGET@/lib/pkgconfig JDK_HOME=/usr/lib64/jvm/java PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU PE_MPICH_TARGET_VAR_nvidia35=-lcudart PE_HDF5_DEFAULT_GENCOMPS_GNU= PE_TPSL_DEFAULT_GENCOMPILERS_GNU_sandybridge=8.2 7.1 SLURM_STEP_NODELIST=cgpu11 LIBSCI_VERSION=19.06.1 CUDA_ROOT=/usr/common/software/sles15_cgpu/cuda/11.1.1 LAND_LIB=-L/lib64 -littnotify SLURM_JOB_NAME=sh CRAY_UDREG_INCLUDE_OPTS=-I/opt/cray/udreg/2.3.2-7.0.1.1_3.49__g8175d3d.ari/include PE_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/netcdf/4.6.3.2/@PRGENV@/@PE_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig SLURM_SRUN_COMM_PORT=64017 PROFILEREAD=true TMPDIR=/tmp PE_TRILINOS_DEFAULT_VOLATILE_PRGENV=CRAYCLANG GNU INTEL LIBRARY_PATH=/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 PE_MPICH_DEFAULT_GENCOMPILERS_GNU=8.2 8.1 7.1 PE_LIBSCI_DEFAULT_OMP_REQUIRES_openmp=_mp PE_PKGCONFIG_LIBS=AtpSigHandler:cray-rca:libsci_mpi:libsci SLURM_JOBID=1921749 RCLOCAL_PRGENV=true PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_skylake=82 71 USERMODULES=PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi:acml:alps:apprentice:apprentice2:atp:blcr:cce:chapel:cray-ccdb:cray-fftw:cray-ga:cray-hdf5:cray-hdf5-parallel:cray-lgdb:cray-libsci:cray-libsci_acc:cray-mpich:cray-mpich-compat:cray-mpich2:cray-netcdf:cray-netcdf-hdf5parallel:cray-parallel-netcdf:cray-petsc:cray-petsc-complex:cray-shmem:cray-snplauncher:cray-tpsl:cray-trilinos:craypat:craype:craypkg-gen:cudatoolkit:ddt:fftw:ga:gcc:hdf5:hdf5-parallel:intel:iobuf:java:lgdb:libfast:libsci_acc:mpich1:netcdf:netcdf-hdf5parallel:netcdf-nofsync:netcdf-nofsync-hdf5parallel:ntk:onesided:papi:parallel-netcdf:pathscale:perftools:perftools-lite:petsc:petsc-complex:pgi:pmi:stat:totalview:tpsl:trilinos:xt-asyncpe:xt-craypat:xt-lgdb:xt-libsci:xt-mpich2:xt-mpt:xt-papi:xt-shmem:xt-totalview LDMSD_PLUGIN_LIBPATH=/opt/ovis/lib64/ovis-ldms PE_PETSC_DEFAULT_GENCOMPILERS_GNU_sandybridge=8.2 7.1 LOADEDMODULES=modules/3.2.11.4:esslurm:cgpu/1.0:gcc/8.3.0:cuda/11.1.1:hpcsdk/20.11:openmpi/4.0.3:craype/2.6.2:craype-network-aries:cray-libsci/19.06.1:udreg/2.3.2-7.0.1.1_3.49__g8175d3d.ari:ugni/6.0.14.0-7.0.1.1_7.51__ge78e5b0.ari:pmi/5.0.14:dmapp/7.1.1-7.0.1.1_4.62__g38cf134.ari:gni-headers/5.0.12.0-7.0.1.1_6.40__g3b1768f.ari:xpmem/2.2.20-7.0.1.1_4.21__g0475745.ari:job/2.2.4-7.0.1.1_3.48__g36b56f4.ari:dvs/2.12_2.2.167-7.0.1.1_17.2__ge473d3a2:alps/6.6.58-7.0.1.1_6.20__g437d88db.ari:rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari:atp/2.1.3:PrgEnv-gnu/6.0.5:cmake/3.18.2 PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_x86_64=19.0 CRAYPE_NETWORK_TARGET=aries GIT_PS1_SHOWUPSTREAM=auto PE_GA_DEFAULT_FIXED_PRGENV=CRAY INTEL CRAY_ALPS_INCLUDE_OPTS=-I/opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/include CRAY_UGNI_INCLUDE_OPTS=-I/opt/cray/ugni/6.0.14.0-7.0.1.1_7.51__ge78e5b0.ari/include PE_TPSL_DEFAULT_GENCOMPS_INTEL_haswell=190 SCRATCH=/global/cscratch1/sd/madams CFS=/global/cfs/cdirs PE_HDF5_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH LIBRARYMODULES=acml:alps:cray-dwarf:cray-fftw:cray-ga:cray-hdf5:cray-hdf5-parallel:cray-libsci:cray-libsci_acc:cray-mpich:cray-mpich-abi:cray-mpich2:cray-netcdf:cray-netcdf-hdf5parallel:cray-parallel-netcdf:cray-petsc:cray-petsc-complex:cray-shmem:cray-tpsl:cray-trilinos:cudatoolkit:fftw:ga:hdf5:hdf5-parallel:iobuf:libfast:netcdf:netcdf-hdf5parallel:ntk:onesided:papi:petsc:petsc-complex:pmi:tpsl:trilinos:xt-libsci:xt-mpich2:xt-mpt:xt-papi SLURM_NODE_ALIASES=(null) INTEL_LICENSE_FILE=28518@crayintel.licenses.nersc.gov:28518@intel.licenses.nersc.gov PE_MPICH_ALTERNATE_LIBS_dpm=_dpm SLURM_JOB_QOS=gpu_interactive SLURM_TOPOLOGY_ADDR_PATTERN=node PE_FFTW_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/fftw/3.3.8.4/@PE_FFTW_DEFAULT_TARGET@/lib/pkgconfig PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_64=190 SSH_TTY=/dev/pts/95 OMPI_MCA_pml=ucx PE_TRILINOS_DEFAULT_GENCOMPS_INTEL_x86_64=190 PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_64=90 MPICH_ABORT_ON_ERROR=1 PE_PAPI_DEFAULT_PKGCONFIG_VARIABLES=PE_PAPI_ACCEL_LIBS_@accelerator@ PE_PAPI_ACCEL_FAMILY_LIBS_@accelerator_family@ ATP_POST_LINK_OPTS=-Wl,-L/opt/cray/pe/atp/2.1.3/libApp/ FROM_HEADER= PE_LIBSCI_DEFAULT_GENCOMPILERS_INTEL_x86_64=16.0 PE_LIBSCI_GENCOMPS_INTEL_x86_64=160 COLUMNS=304 MAIL=/var/spool/mail/madams PE_HDF5_PARALLEL_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL PE_PETSC_DEFAULT_GENCOMPS_CRAYCLANG_sandybridge=90 SLURM_STEP_RESV_PORTS=64359-64360 SLURM_CPUS_ON_NODE=10 PE_HDF5_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL PE_MPICH_ALTERNATE_LIBS_multithreaded=_mt PE_TPSL_DEFAULT_GENCOMPS_INTEL_sandybridge=190 PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_64=82 71 PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 PE_LIBSCI_GENCOMPS_CRAYCLANG_x86_64=90 PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_sandybridge=9.0 SLURM_JOB_NUM_NODES=1 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_x86_skylake=8.2 7.1 PE_FFTW_DEFAULT_TARGET_haswell=haswell PE_GA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/ga/5.3.0.10/@PRGENV@/@PE_GA_DEFAULT_GENCOMPS@/lib/pkgconfig PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_haswell=19.0 LESSKEY=/etc/lesskey.bin CRAY_SITE_LIST_DIR=/etc/opt/cray/pe/modules PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.11.1.1/@PRGENV@/@PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig SHELL=/bin/bash TERM=xterm-256color PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAYCLANG_haswell=9.0 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_sandybridge=9.0 CSCRATCH=/global/cscratch1/sd/madams PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_x86_64=90 PE_FFTW_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS_GNU= PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_64=82 71 SLURM_JOB_UID=13302 CUDA_VERSION=11.1.1 CRAY_LIBSCI_VERSION=19.06.1 PE_TPSL_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 CRAYCLANG CRAYCLANG64 GNU GNU64 INTEL INTEL64 LS_OPTIONS=-N --color=none -T 0 SLURM_JOB_PARTITION=gpu PE_MPICH_DEFAULT_GENCOMPS_GNU=82 81 71 PE_LIBSCI_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/libsci/19.06.1/@PRGENV@/@PE_LIBSCI_DEFAULT_GENCOMPS@/@PE_LIBSCI_DEFAULT_TARGET@/lib/pkgconfig PE_LIBSCI_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_DEFAULT_OMP_REQUIRES_@openmp@:PE_SCI_EXT_LIBPATH:PE_SCI_EXT_LIBNAME PE_SMA_DEFAULT_COMPFLAG_GNU=-fcray-pointer PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_skylake=90 SLURM_PTY_WIN_ROW=102 CRAY_XPMEM_POST_LINK_OPTS=-L/opt/cray/xpmem/2.2.20-7.0.1.1_4.21__g0475745.ari/lib64 PE_PETSC_DEFAULT_GENCOMPS_GNU_haswell=82 71 OMPI_FC=gfortran NVHPC=/usr/common/software/sles15_cgpu/hpcsdk/20.11 PE_SMA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.7.10/gni/sma@PE_SMA_DEFAULT_DIR_DEFAULT64@/lib64/pkgconfig PE_HDF5_PARALLEL_DEFAULT_GENCOMPILERS_GNU=8.2 7.1 IPM_REPORT=full TMOUT=1800 UCX_NET_DEVICES=mlx5_0:1,mlx5_2:1,mlx5_4:1,mlx5_6:1 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_x86_skylake=9.0 SLURM_JOB_USER=madams SLURM_PTY_WIN_COL=304 CRAY_DMAPP_POST_LINK_OPTS=-L/opt/cray/dmapp/7.1.1-7.0.1.1_4.62__g38cf134.ari/lib64 PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_x86_64=160 PE_GA_DEFAULT_GENCOMPILERS_GNU=8.2 7.3 SHLVL=4 PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU PE_PETSC_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 KMP_AFFINITY=balanced SLURM_SUBMIT_HOST=cgpu11 PYTHONPATH=/opt/mods/lib/python3.6/site-packages:/opt/ovis/lib/python3.6/site-packages CRAY_LIBSCI_PREFIX_DIR=/opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64 PE_TRILINOS_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_HDF5_PARALLEL:PE_NETCDF_HDF5PARALLEL:PE_LIBSCI:PE_TPSL SLURM_JOB_ACCOUNT=m1759 PE_PAPI_DEFAULT_ACCELL_FAMILY_LIBS= MANPATH=/opt/cray/pe/atp/2.1.3/man:/opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/man:/opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/man:/opt/cray/pe/pmi/5.0.14/man:/opt/cray/pe/libsci/19.06.1/man:/opt/cray/pe/man/csmlversion:/opt/cray/pe/craype/2.6.2/man:/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/share:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/man:/usr/common/software/sles15_cgpu/cuda/11.1.1/doc/man:/usr/common/software/sles15_cgpu/gcc/8.3.0/share/man:/opt/cray/pe/modules/3.2.11.4/share/man:/usr/common/software/man:/usr/common/nsg/man:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/opt/cray/share/man:/opt/cray/share/man:/opt/cray/pe/man PE_FFTW_DEFAULT_TARGET_mic_knl=mic_knl PE_MPICH_DEFAULT_GENCOMPS_CRAYCLANG=90 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 PE_PETSC_DEFAULT_GENCOMPS_INTEL_haswell=190 PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_haswell=9.0 ATP_CFLAGS_GNU_FORTRAN=-fno-backtrace CRAY_PRGENVGNU=loaded PE_FFTW_DEFAULT_TARGET_sandybridge=sandybridge PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_sandybridge=19.0 PE_TPSL_DEFAULT_GENCOMPS_CRAY_haswell=90 SLURM_STEP_LAUNCHER_PORT=64017 MODULEPATH=/global/common/software/nersc/sles15_cgpu/extra_modulefiles:/opt/cray/ari/modulefiles:/opt/cray/pe/craype-targets/default/modulefiles:/opt/cray/pe/modulefiles:/opt/cray/modulefiles:/opt/modulefiles:/global/common/software/nersc/cle7/modulefiles:/global/common/software/nersc/cle7/extra_modulefiles:/usr/common/ftg/modulefiles SLURM_PTY_PORT=64021 PE_PKGCONFIG_PRODUCTS_DEFAULT=PE_PAPI OMPI_CC=gcc SLURM_GTIDS=0 LOGNAME=madams DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/13302/bus PE_MPICH_DEFAULT_FIXED_PRGENV=INTEL PE_MPICH_NV_LIBS_nvidia60=-lcudart XDG_RUNTIME_DIR=/run/user/13302 PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_64=190 MODULE_VERSION_STACK=3.2.11.4 PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_skylake=190 PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/hdf5-parallel/1.10.5.2/@PRGENV@/@PE_HDF5_PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_skylake=190 JRE_HOME=/usr/lib64/jvm/java PE_TPSL_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 PE_LIBSCI_PKGCONFIG_VARIABLES=PE_LIBSCI_OMP_REQUIRES_@openmp@:PE_SCI_EXT_LIBPATH:PE_SCI_EXT_LIBNAME MPICH_MPIIO_DVS_MAXNODES=28 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_haswell=9.0 OPENMPI_DIR=/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc XDG_CONFIG_DIRS=/etc/xdg PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAY_x86_64=9.0 PE_LIBSCI_GENCOMPS_CRAY_x86_64=90 PE_MPICH_DEFAULT_VOLATILE_PRGENV=GNU CRAYCLANG CRAY PE_MPICH_TARGET_VAR_nvidia20=-lcudart PATH=/global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin:/opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin:/opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin:/opt/cray/alps/default/bin:/opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin:/opt/cray/pe/craype/2.6.2/bin:/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin:/usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin:/usr/common/software/sles15_cgpu/cuda/11.1.1/bin:/usr/common/software/sles15_cgpu/gcc/8.3.0/bin:/opt/esslurm/bin:/opt/cray/pe/modules/3.2.11.4/bin:/usr/common/software/bin:/usr/common/nsg/bin:/opt/ovis/bin:/opt/ovis/sbin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/opt/cray/pe/bin SLURM_JOB_ID=1921749 PE_TPSL_64_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 CRAYCLANG CRAYCLANG64 GNU GNU64 INTEL INTEL64 _LMFILES_=/opt/cray/pe/modulefiles/modules/3.2.11.4:/global/common/software/nersc/cle7/extra_modulefiles/esslurm:/global/common/software/nersc/cle7/extra_modulefiles/cgpu/1.0:/global/common/software/nersc/sles15_cgpu/extra_modulefiles/gcc/8.3.0:/global/common/software/nersc/sles15_cgpu/extra_modulefiles/cuda/11.1.1:/global/common/software/nersc/sles15_cgpu/extra_modulefiles/hpcsdk/20.11:/global/common/software/nersc/sles15_cgpu/extra_modulefiles/openmpi/4.0.3:/opt/cray/pe/modulefiles/craype/2.6.2:/opt/cray/pe/craype-targets/default/modulefiles/craype-network-aries:/opt/cray/pe/modulefiles/cray-libsci/19.06.1:/opt/cray/ari/modulefiles/udreg/2.3.2-7.0.1.1_3.49__g8175d3d.ari:/opt/cray/ari/modulefiles/ugni/6.0.14.0-7.0.1.1_7.51__ge78e5b0.ari:/opt/cray/pe/modulefiles/pmi/5.0.14:/opt/cray/ari/modulefiles/dmapp/7.1.1-7.0.1.1_4.62__g38cf134.ari:/opt/cray/ari/modulefiles/gni-headers/5.0.12.0-7.0.1.1_6.40__g3b1768f.ari:/opt/cray/ari/modulefiles/xpmem/2.2.20-7.0.1.1_4.21__g0475745.ari:/opt/cray/ari/modulefiles/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari:/opt/cray/ari/modulefiles/dvs/2.12_2.2.167-7.0.1.1_17.2__ge473d3a2:/opt/cray/ari/modulefiles/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari:/opt/cray/ari/modulefiles/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari:/opt/cray/pe/modulefiles/atp/2.1.3:/opt/cray/pe/modulefiles/PrgEnv-gnu/6.0.5:/global/common/software/nersc/cle7/extra_modulefiles/cmake/3.18.2 PE_NETCDF_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL PE_PETSC_DEFAULT_GENCOMPILERS_GNU_haswell=8.2 7.1 SLURM_STEP_NUM_TASKS=1 DMAPP_ABORT_ON_ERROR=1 MODULESHOME=/opt/cray/pe/modules/3.2.11.4 PKG_CONFIG_PATH=/opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/lib64/pkgconfig:/opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/lib64/pkgconfig:/opt/cray/xpmem/2.2.20-7.0.1.1_4.21__g0475745.ari/lib64/pkgconfig:/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.40__g3b1768f.ari/lib64/pkgconfig:/opt/cray/dmapp/7.1.1-7.0.1.1_4.62__g38cf134.ari/lib64/pkgconfig:/opt/cray/pe/pmi/5.0.14/lib64/pkgconfig:/opt/cray/ugni/6.0.14.0-7.0.1.1_7.51__ge78e5b0.ari/lib64/pkgconfig:/opt/cray/udreg/2.3.2-7.0.1.1_3.49__g8175d3d.ari/lib64/pkgconfig:/opt/cray/pe/craype/2.6.2/pkg-config:/opt/cray/pe/iobuf/2.0.9/lib/pkgconfig:/opt/cray/pe/fftw/2.1.5.9/lib/pkgconfig:/opt/cray/pe/atp/3.8.1/lib/pkgconfig:/opt/cray/pe/atp/2.1.3/lib/pkgconfig LIBSCI_BASE_DIR=/opt/cray/pe/libsci/19.06.1 PETSC_DIR=/global/homes/m/madams/petsc G_BROKEN_FILENAMES=1 HISTSIZE=100 PE_PETSC_DEFAULT_GENCOMPS_CRAY_sandybridge=90 CRAYPE_DIR=/opt/cray/pe/craype/2.6.2 SLURM_JOB_CPUS_PER_NODE_PACK_GROUP_0=10 PE_GA_DEFAULT_VOLATILE_PRGENV=GNU PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_64=90 PE_TRILINOS_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 7.1 SLURM_STEP_NUM_NODES=1 PE_HDF5_PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PE_PETSC_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 7.1 PE_PKGCONFIG_DEFAULT_PRODUCTS=PE_TRILINOS:PE_TPSL_64:PE_TPSL:PE_PETSC:PE_PARALLEL_NETCDF:PE_NETCDF_HDF5PARALLEL:PE_NETCDF:PE_MPICH:PE_LIBSCI:PE_HDF5_PARALLEL:PE_HDF5:PE_GA:PE_FFTW2:PE_FFTW CPU=x86_64 CRAYPE_VERSION=2.6.2 CRAY_PMI_POST_LINK_OPTS=-L/opt/cray/pe/pmi/5.0.14/lib64 SLURM_LOCALID=0 CRAY_GNI_HEADERS_INCLUDE_OPTS=-I/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.40__g3b1768f.ari/include CVS_RSH=ssh LESSOPEN=lessopen.sh %s PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_x86_64=190 PE_FFTW_DEFAULT_TARGET_x86_cascadelake=x86_cascadelake PE_TPSL_DEFAULT_GENCOMPILERS_CRAYCLANG_haswell=9.0 MPICH_GNI_ROUTING_MODE=ADAPTIVE_3 CRAY_XPMEM_INCLUDE_OPTS=-I/opt/cray/xpmem/2.2.20-7.0.1.1_4.21__g0475745.ari/include PE_LIBSCI_DEFAULT_GENCOMPILERS_GNU_x86_64=8.1 7.1 PE_LIBSCI_GENCOMPS_GNU_x86_64=81 71 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_x86_skylake=19.0 BASH_FUNC_module%%=() { eval `/opt/cray/pe/modules/3.2.11.4/bin/modulecmd bash $*` } SLURM_MPI_TYPE=pmi2 SLURM_NTASKS=1 SLURM_NPROCS=1 SLURM_STEP_GPUS=3 CUDA_VISIBLE_DEVICES=0 GPU_DEVICE_ORDINAL=0 ROCR_VISIBLE_DEVICES=0 SLURM_CPU_BIND=quiet,mask_cpu:0x0000000F800000000F80 SLURM_CPU_BIND_LIST=0x0000000F800000000F80 SLURM_CPU_BIND_TYPE=mask_cpu: SLURM_CPU_BIND_VERBOSE=quiet PMI_FD=11 PMI_JOBID=1921749.3 PMI_RANK=0 PMI_SIZE=1 Defined make macro "MPIEXEC" to "srun -G 1 -c 10" Checking for program /usr/libexec/ApplicationFirewall/socketfilterfw...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/socketfilterfw...not found Unable to find programs ['socketfilterfw'] providing listing of the specific search path Warning accessing /usr/libexec/ApplicationFirewall gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/hostname...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/hostname...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/hostname...not found Checking for program /opt/cray/alps/default/bin/hostname...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/hostname...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/hostname...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/hostname...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/hostname...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/hostname...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/hostname...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/hostname...not found Checking for program /opt/esslurm/bin/hostname...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/hostname...not found Checking for program /usr/common/software/bin/hostname...not found Checking for program /usr/common/nsg/bin/hostname...not found Checking for program /opt/ovis/bin/hostname...not found Checking for program /opt/ovis/sbin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/bin/hostname...found Defined make macro "HOSTNAME" to "hostname" Running Executable with threads to time it out at 60 Executing: hostname stdout: cgpu11 Return code from hostname: 0 Hostname works, running network checks Checking for program /sbin/ping...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/ping...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/ping...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/ping...not found Checking for program /opt/cray/alps/default/bin/ping...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/ping...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/ping...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/ping...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/ping...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/ping...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/ping...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/ping...not found Checking for program /opt/esslurm/bin/ping...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/ping...not found Checking for program /usr/common/software/bin/ping...not found Checking for program /usr/common/nsg/bin/ping...not found Checking for program /opt/ovis/bin/ping...not found Checking for program /opt/ovis/sbin/ping...not found Checking for program /usr/local/bin/ping...not found Checking for program /usr/bin/ping...found Defined make macro "PING" to "ping" Executing: uname -s stdout: Linux Running Executable with threads to time it out at 60 Executing: ping -c 2 cgpu11 stdout: PING cgpu11 (128.55.144.54) 56(84) bytes of data. 64 bytes from cgpu11 (128.55.144.54): icmp_seq=1 ttl=64 time=0.011 ms 64 bytes from cgpu11 (128.55.144.54): icmp_seq=2 ttl=64 time=0.018 ms --- cgpu11 ping statistics --- 2 packets transmitted, 2 received, 0% packet loss, time 1011ms rtt min/avg/max/mdev = 0.011/0.014/0.018/0.005 ms Return code from ping: 0 ============================================================================================= ======== Checking running linked program ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-QOJMfI/config.packages.MPI/conftest to see if it can be run Executing: srun -G 1 -c 10 -n 1 /tmp/petsc-QOJMfI/config.packages.MPI/conftest Running Executable with threads to time it out at 120 Executing: srun -G 1 -c 10 -n 1 /tmp/petsc-QOJMfI/config.packages.MPI/conftest ============================================================================================= TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:432) Checking for MPI Datatype handles ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_LONG_DOUBLE" to "1" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_INT64_T" to "1" ============================================================================================= TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:478) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.libraries/conftest.o: in function `_check_MPI_SGI_barrier': /tmp/petsc-QOJMfI/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.libraries/conftest.o: in function `_check_MPI_SGI_barrier': /tmp/petsc-QOJMfI/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.libraries/conftest.o: in function `_check_MPI_SGI_barrier': /tmp/petsc-QOJMfI/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' collect2: error: ld returned 1 exit status: SGI MPI test failure ============================================================================================= TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:488) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.utilities.missing -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lquadmath -lstdc++ -ldl ============================================================================================= TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:504) Make sure fortran include [mpif.h] and library symbols are found Checking for fortran mpi_init() Checking for functions [] in library [] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.libraries -g -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.libraries/conftest.F90 Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Checking for mpi.mod Checking for functions [] in library [] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.libraries -g -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.libraries/conftest.F90 Successful compile: Source: program main use mpi integer(kind=selected_int_kind(5)) ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_F90MODULE" to "1" ============================================================================================= TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:526) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPIIO" to "1" ============================================================================================= TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:630) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -show stdout: gcc -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -pthread -march=skylake-avx512 -Wl,-rpath -Wl,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,--enable-new-dtags -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi compilers: Checking arg gcc compilers: Checking arg -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include compilers: Found include option: -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include Executing: /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.packages.cuda -I/tmp/petsc-QOJMfI/config.setCompilers -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -O3 -gencode arch=compute_80,code=sm_80 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -Wno-deprecated-gpu-targets /tmp/petsc-QOJMfI/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -O3 -gencode arch=compute_80,code=sm_80 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include Added CUDA compiler flag -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include compilers: Checking arg -pthread compilers: Checking arg -march=skylake-avx512 compilers: Checking arg -Wl,-rpath compilers: Checking arg -Wl,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib compilers: Checking arg -Wl,--enable-new-dtags compilers: Checking arg -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib compilers: Checking arg -lmpi ============================================================================================= TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:672) Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.MPI/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ============================================================================================= TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" ;petscpkgver(MPI_VERSION); Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.packages.cuda -I/tmp/petsc-QOJMfI/config.packages.MPI -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.MPI 8.593661 ============================================================================================= TESTING: consistencyChecks from config.packages.zstd(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.zstd 0.001155 ============================================================================================= TESTING: consistencyChecks from config.packages.yaml(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.000794 ============================================================================================= TESTING: consistencyChecks from config.packages.sycl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sycl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.sycl 0.000992 ============================================================================================= TESTING: consistencyChecks from config.packages.ssl(config/BuildSystem/config/packages/ssl.py:31) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.001055 ============================================================================================= TESTING: consistencyChecks from config.packages.sprng(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.000784 PETSc clone, checking for Sowing Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/pdflatex...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/pdflatex...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/pdflatex...not found Checking for program /opt/cray/alps/default/bin/pdflatex...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/pdflatex...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/pdflatex...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/pdflatex...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/pdflatex...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/pdflatex...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/pdflatex...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/pdflatex...not found Checking for program /opt/esslurm/bin/pdflatex...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/pdflatex...not found Checking for program /usr/common/software/bin/pdflatex...not found Checking for program /usr/common/nsg/bin/pdflatex...not found Checking for program /opt/ovis/bin/pdflatex...not found Checking for program /opt/ovis/sbin/pdflatex...not found Checking for program /usr/local/bin/pdflatex...not found Checking for program /usr/bin/pdflatex...found Defined make macro "PDFLATEX" to "/usr/bin/pdflatex" Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/bfort...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/bfort...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/bfort...not found Checking for program /opt/cray/alps/default/bin/bfort...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/bfort...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/bfort...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/bfort...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/bfort...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/bfort...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/bfort...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/bfort...not found Checking for program /opt/esslurm/bin/bfort...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/bfort...not found Checking for program /usr/common/software/bin/bfort...not found Checking for program /usr/common/nsg/bin/bfort...not found Checking for program /opt/ovis/bin/bfort...not found Checking for program /opt/ovis/sbin/bfort...not found Checking for program /usr/local/bin/bfort...not found Checking for program /usr/bin/bfort...not found Checking for program /bin/bfort...not found Checking for program /usr/lib/mit/bin/bfort...not found Checking for program /usr/lib/mit/sbin/bfort...not found Checking for program /opt/cray/pe/bin/bfort...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/bfort...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/doctext...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/doctext...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/doctext...not found Checking for program /opt/cray/alps/default/bin/doctext...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/doctext...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/doctext...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/doctext...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/doctext...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/doctext...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/doctext...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/doctext...not found Checking for program /opt/esslurm/bin/doctext...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/doctext...not found Checking for program /usr/common/software/bin/doctext...not found Checking for program /usr/common/nsg/bin/doctext...not found Checking for program /opt/ovis/bin/doctext...not found Checking for program /opt/ovis/sbin/doctext...not found Checking for program /usr/local/bin/doctext...not found Checking for program /usr/bin/doctext...not found Checking for program /bin/doctext...not found Checking for program /usr/lib/mit/bin/doctext...not found Checking for program /usr/lib/mit/sbin/doctext...not found Checking for program /opt/cray/pe/bin/doctext...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/doctext...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/mapnames...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/mapnames...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/mapnames...not found Checking for program /opt/cray/alps/default/bin/mapnames...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/mapnames...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/mapnames...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mapnames...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/mapnames...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/mapnames...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/mapnames...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/mapnames...not found Checking for program /opt/esslurm/bin/mapnames...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/mapnames...not found Checking for program /usr/common/software/bin/mapnames...not found Checking for program /usr/common/nsg/bin/mapnames...not found Checking for program /opt/ovis/bin/mapnames...not found Checking for program /opt/ovis/sbin/mapnames...not found Checking for program /usr/local/bin/mapnames...not found Checking for program /usr/bin/mapnames...not found Checking for program /bin/mapnames...not found Checking for program /usr/lib/mit/bin/mapnames...not found Checking for program /usr/lib/mit/sbin/mapnames...not found Checking for program /opt/cray/pe/bin/mapnames...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/mapnames...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/bib2html...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/bib2html...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/bib2html...not found Checking for program /opt/cray/alps/default/bin/bib2html...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/bib2html...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/bib2html...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/bib2html...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/bib2html...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/bib2html...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/bib2html...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/bib2html...not found Checking for program /opt/esslurm/bin/bib2html...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/bib2html...not found Checking for program /usr/common/software/bin/bib2html...not found Checking for program /usr/common/nsg/bin/bib2html...not found Checking for program /opt/ovis/bin/bib2html...not found Checking for program /opt/ovis/sbin/bib2html...not found Checking for program /usr/local/bin/bib2html...not found Checking for program /usr/bin/bib2html...not found Checking for program /bin/bib2html...not found Checking for program /usr/lib/mit/bin/bib2html...not found Checking for program /usr/lib/mit/sbin/bib2html...not found Checking for program /opt/cray/pe/bin/bib2html...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/bib2html...not found Bfort not found. Installing sowing for FortranStubs ============================================================================================= TESTING: consistencyChecks from config.packages.sowing(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.sowing(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.sowing(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional sowing Looking for SOWING at git.sowing, hg.sowing or a directory starting with ['petsc-pkg-sowing'] Found a copy of SOWING in git.sowing Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v1.1.26-p1^{commit}'] Executing: ['git', 'rev-parse', 'v1.1.26-p1'] stdout: 674d5f3c1bf3ce6e1d744818915a0d723ce4dbe0 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing pkg.gitcommit Removing sowing.petscconf Executing: ['git', 'checkout', '-f', '674d5f3c1bf3ce6e1d744818915a0d723ce4dbe0'] Makefile /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/pkg.conf.sowing has correct checksum Commit file /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/pkg.gitcommit.sowing has correct checksum Do not need to rebuild SOWING Not checking for library in Download SOWING: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Download SOWING: ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Found header files [] in ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking for headers [] in Download SOWING: ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkVersion from config.packages.sowing(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version For sowing unable to find version information since includes and version includes are missing skipping version check ============================================================================================= TESTING: checkSharedLibrary from config.packages.sowing(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared Checking for program /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/bfort...found Defined make macro "BFORT" to "/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/bfort" Checking for program /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/doctext...found Defined make macro "DOCTEXT" to "/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/doctext" Checking for program /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/mapnames...found Defined make macro "MAPNAMES" to "/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/mapnames" Checking for program /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/bib2html...found Defined make macro "BIB2HTML" to "/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/bib2html" Executing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/bfort -version stdout: bfort (sowing) release 1.1.26 of Date unknown Running /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/bfort to generate fortran stubs child config.packages.sowing 14.410510 ============================================================================================= TESTING: consistencyChecks from config.packages.revolve(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.001282 ============================================================================================= TESTING: consistencyChecks from config.packages.radau5(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.000789 ============================================================================================= TESTING: consistencyChecks from config.packages.pami(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.000764 ============================================================================================= TESTING: consistencyChecks from config.packages.opengles(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.000743 ============================================================================================= TESTING: consistencyChecks from config.packages.opencl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.000720 ============================================================================================= TESTING: consistencyChecks from config.packages.muparser(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.000770 ============================================================================================= TESTING: consistencyChecks from config.packages.mpe(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.000772 ============================================================================================= TESTING: consistencyChecks from config.packages.memkind(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.000714 ============================================================================================= TESTING: consistencyChecks from config.packages.libmesh(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:76) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.001147 ============================================================================================= TESTING: consistencyChecks from config.packages.moose(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.000808 ============================================================================================= TESTING: consistencyChecks from config.packages.libjpeg(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.000779 Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/lgrind...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/lgrind...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/lgrind...not found Checking for program /opt/cray/alps/default/bin/lgrind...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/lgrind...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/lgrind...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/lgrind...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/lgrind...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/lgrind...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/lgrind...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/lgrind...not found Checking for program /opt/esslurm/bin/lgrind...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/lgrind...not found Checking for program /usr/common/software/bin/lgrind...not found Checking for program /usr/common/nsg/bin/lgrind...not found Checking for program /opt/ovis/bin/lgrind...not found Checking for program /opt/ovis/sbin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /bin/lgrind...not found Checking for program /usr/lib/mit/bin/lgrind...not found Checking for program /usr/lib/mit/sbin/lgrind...not found Checking for program /opt/cray/pe/bin/lgrind...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/lgrind...not found child config.packages.lgrind 0.000806 ============================================================================================= TESTING: consistencyChecks from config.packages.hip(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hip(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.hip 0.000846 child config.packages.gmsh 0.000101 ============================================================================================= TESTING: consistencyChecks from config.packages.gmp(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.000794 ============================================================================================= TESTING: consistencyChecks from config.packages.mpfr(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.000775 ============================================================================================= TESTING: consistencyChecks from config.packages.giflib(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.000795 ============================================================================================= TESTING: consistencyChecks from config.packages.cub(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cub(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.cub 0.000780 ============================================================================================= TESTING: consistencyChecks from config.packages.ctetgen(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ctetgen 0.000762 ============================================================================================= TESTING: consistencyChecks from config.packages.concurrencykit(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.000762 ============================================================================================= TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:30) Looking for default C2html executable Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/c2html...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.62__g8e3fb5b.ari/bin/c2html...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.20__g437d88db.ari/sbin/c2html...not found Checking for program /opt/cray/alps/default/bin/c2html...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.48__g36b56f4.ari/bin/c2html...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/c2html...not found Checking for program /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/c2html...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/compilers/bin/c2html...not found Checking for program /usr/common/software/sles15_cgpu/hpcsdk/20.11/Linux_x86_64/20.11/cuda/bin/c2html...not found Checking for program /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/c2html...not found Checking for program /usr/common/software/sles15_cgpu/gcc/8.3.0/bin/c2html...not found Checking for program /opt/esslurm/bin/c2html...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/c2html...not found Checking for program /usr/common/software/bin/c2html...not found Checking for program /usr/common/nsg/bin/c2html...not found Checking for program /opt/ovis/bin/c2html...not found Checking for program /opt/ovis/sbin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/lib/mit/bin/c2html...not found Checking for program /usr/lib/mit/sbin/c2html...not found Checking for program /opt/cray/pe/bin/c2html...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/c2html...not found child config.packages.c2html 0.001214 ============================================================================================= TESTING: consistencyChecks from config.packages.boost(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.000819 ============================================================================================= TESTING: consistencyChecks from config.packages.silo(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.000788 ============================================================================================= TESTING: consistencyChecks from config.packages.Random123(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.000783 ============================================================================================= TESTING: consistencyChecks from config.packages.PARTY(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.000787 ============================================================================================= TESTING: consistencyChecks from config.packages.NVSHMEM(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.NVSHMEM(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.NVSHMEM 0.000725 ============================================================================================= TESTING: consistencyChecks from config.packages.Matlab(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.000707 ============================================================================================= TESTING: consistencyChecks from config.packages.MatlabEngine(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.000715 ============================================================================================= TESTING: consistencyChecks from config.packages.Mathematica(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.000720 ============================================================================================= TESTING: consistencyChecks from config.packages.regex(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Checking for optional headers [] in Compiler specific search REGEX: ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Found header files [] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking for headers ['regex.h'] in Compiler specific search REGEX: ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.packages.cuda -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.headers -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['regex.h'] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.regex 0.244953 ============================================================================================= TESTING: consistencyChecks from config.packages.libceed(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.001300 Defined "PYTHON_EXE" to ""/usr/bin/python"" Executing: /usr/bin/python -c "import Cython" Executing: /usr/bin/python -c "import numpy" child config.packages.python 0.117467 ============================================================================================= TESTING: consistencyChecks from config.packages.petsc4py(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:131) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] Defined make rule "petsc4pytest" with dependencies "" and code [] child config.packages.petsc4py 0.001834 ============================================================================================= TESTING: consistencyChecks from config.packages.mpi4py(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:79) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] child config.packages.mpi4py 0.001327 ============================================================================================= TESTING: consistencyChecks from config.packages.slepc(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.slepc(config/BuildSystem/config/packages/slepc.py:97) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc 0.001246 ============================================================================================= TESTING: consistencyChecks from config.packages.opengl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.000772 ============================================================================================= TESTING: consistencyChecks from config.packages.glut(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.000791 ============================================================================================= TESTING: consistencyChecks from config.packages.GLVis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.GLVis(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.GLVis 0.000859 ============================================================================================= TESTING: consistencyChecks from config.packages.CoDiPack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.000780 ============================================================================================= TESTING: consistencyChecks from config.packages.adblaslapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.000836 child config.packages.cxxlibs 0.000018 ============================================================================================= TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:50) Looking for default CMake executable Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/cmake...found Defined make macro "CMAKE" to "/global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/cmake" Looking for default CTest executable Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/ctest...found Defined make macro "CTEST" to "/global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/ctest" Executing: /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/cmake --version stdout: cmake version 3.18.2 CMake suite maintained and supported by Kitware (kitware.com/cmake). cmake version found 3.18.2 child config.packages.cmake 0.098361 ============================================================================================= TESTING: consistencyChecks from config.packages.unittestcpp(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp 0.001373 ============================================================================================= TESTING: consistencyChecks from config.packages.googletest(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.000925 ============================================================================================= TESTING: consistencyChecks from config.packages.eigen(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.eigen 0.000867 ============================================================================================= TESTING: consistencyChecks from config.packages.szlib(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.szlib(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.szlib 0.000832 ============================================================================================= TESTING: consistencyChecks from config.packages.zlib(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.zlib(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.zlib(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional zlib Checking for library in Compiler specific search ZLIB: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Linker output before filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.libraries/conftest.o: undefined reference to symbol 'compress' /usr/bin/ld: /lib64/libz.so.1: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-QOJMfI/config.libraries/conftest.o: undefined reference to symbol 'compress' /usr/bin/ld: /lib64/libz.so.1: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status: Checking for functions [compress uncompress] in library [] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char compress(); static void _check_compress() { compress(); } char uncompress(); static void _check_uncompress() { uncompress(); } int main() { _check_compress(); _check_uncompress();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-QOJMfI/config.libraries/conftest.o: undefined reference to symbol 'compress' /usr/bin/ld: /lib64/libz.so.1: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status Checking for library in Compiler specific search ZLIB: ['libz.a'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [compress uncompress] in library ['libz.a'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char compress(); static void _check_compress() { compress(); } char uncompress(); static void _check_uncompress() { uncompress(); } int main() { _check_compress(); _check_uncompress();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lz -lquadmath -lstdc++ -ldl Defined "HAVE_LIBZ" to "1" Checking for optional headers [] in Compiler specific search ZLIB: ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Found header files [] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking for headers ['zlib.h'] in Compiler specific search ZLIB: ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['zlib.h'] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.packages.cuda -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.headers -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['zlib.h'] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkVersion from config.packages.zlib(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "zlib.h" ;petscpkgver(ZLIB_VERSION); Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.packages.cuda -I/tmp/petsc-QOJMfI/config.packages.zlib -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.packages.zlib/conftest.c For zlib need <= 1.2.11 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.zlib(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.zlib 0.485036 child config.packages.mathlib 0.000024 ============================================================================================= TESTING: consistencyChecks from config.packages.tetgen(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.tetgen 0.001176 ============================================================================================= TESTING: consistencyChecks from config.packages.tchem(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.tchem 0.000801 ============================================================================================= TESTING: consistencyChecks from config.packages.saws(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.saws 0.000803 ============================================================================================= TESTING: consistencyChecks from config.packages.libpng(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.libpng 0.000802 ============================================================================================= TESTING: consistencyChecks from config.packages.combblas(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.combblas(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.combblas 0.000818 ============================================================================================= TESTING: consistencyChecks from config.packages.Triangle(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Triangle 0.000798 ============================================================================================= TESTING: consistencyChecks from config.packages.metis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.metis(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.metis 0.000802 ============================================================================================= TESTING: consistencyChecks from config.packages.pragmatic(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pragmatic 0.000840 ============================================================================================= TESTING: consistencyChecks from config.packages.parmetis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.parmetis 0.000815 ============================================================================================= TESTING: consistencyChecks from config.packages.Chaco(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Chaco 0.000791 Executing: uname -s stdout: Linux ============================================================================================= TESTING: consistencyChecks from config.packages.hdf5(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.hdf5 0.018639 ============================================================================================= TESTING: consistencyChecks from config.packages.med(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.med(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.med 0.000848 ============================================================================================= TESTING: consistencyChecks from config.packages.cgns(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.cgns 0.000750 ============================================================================================= TESTING: consistencyChecks from config.packages.ascem-io(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ascem-io 0.000798 ============================================================================================= TESTING: consistencyChecks from config.packages.pflotran(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pflotran 0.000796 ============================================================================================= TESTING: consistencyChecks from config.packages.alquimia(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.alquimia 0.000810 ============================================================================================= TESTING: consistencyChecks from config.packages.SAMRAI(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SAMRAI(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.SAMRAI 0.000782 child config.packages.flibs 0.000020 ============================================================================================= TESTING: consistencyChecks from config.packages.pnetcdf(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pnetcdf 0.000805 ============================================================================================= TESTING: consistencyChecks from config.packages.netcdf(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.netcdf 0.000777 ============================================================================================= TESTING: consistencyChecks from config.packages.exodusii(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.exodusii 0.000772 ============================================================================================= TESTING: consistencyChecks from config.packages.fblaslapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.fblaslapack(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.fblaslapack(config/BuildSystem/config/packages/fblaslapack.py:20) ================================================================================== Checking for a functional fblaslapack Looking for FBLASLAPACK at git.fblaslapack, hg.fblaslapack or a directory starting with ['petsc-pkg-fblaslapack'] Found a copy of FBLASLAPACK in git.fblaslapack Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v3.4.2-p3^{commit}'] Executing: ['git', 'rev-parse', 'v3.4.2-p3'] stdout: e8a03f57d64cf01d987d4b4ce9b961c24765747d Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing pkg.gitcommit Removing tmpmakefile Executing: ['git', 'checkout', '-f', 'e8a03f57d64cf01d987d4b4ce9b961c24765747d'] Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -qversion Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -V Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 --version stdout: GNU Fortran (GCC) 8.3.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -O0 /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -O0 Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -mfp16-format=ieee /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: gcc: error: unrecognized command line option '-mfp16-format=ieee' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 -mfp16-format=ieee gcc: error: unrecognized command line option '-mfp16-format=ieee' PETSc Error: No output file produced Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to gcc: error: unrecognized command line option '-mfp16-format=ieee' PETSc Error: No output file produced Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -V Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 --version stdout: GNU Fortran (GCC) 8.3.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Makefile /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/pkg.conf.fblaslapack has correct checksum Commit file /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/pkg.gitcommit.fblaslapack has correct checksum Do not need to rebuild FBLASLAPACK Not checking for library in Download FBLASLAPACK: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Download FBLASLAPACK: ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Found header files [] in ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking for headers [] in Download FBLASLAPACK: ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkVersion from config.packages.fblaslapack(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.fblaslapack(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.fblaslapack 0.549506 ============================================================================================= TESTING: consistencyChecks from config.packages.pthread(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.pthread(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:20) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Checking for optional headers [] in Compiler specific search PTHREAD: ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Found header files [] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking for headers ['pthread.h'] in Compiler specific search PTHREAD: ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.packages.cuda -I/tmp/petsc-QOJMfI/config.packages.zlib -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.headers -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['pthread.h'] in ['/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.pthread/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.packages.MPI -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.pthread/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Defined "HAVE_PTHREAD_BARRIER_T" to "1" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.packages.pthread/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.packages.pthread/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Defined "HAVE_SCHED_CPU_SET_T" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.packages.cuda -I/tmp/petsc-QOJMfI/config.packages.zlib -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.packages.pthread/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSCTL_H" to "1" ============================================================================================= TESTING: checkVersion from config.packages.pthread(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.pthread 0.454133 ============================================================================================= TESTING: consistencyChecks from config.packages.egads(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.egads(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.egads 0.001295 ============================================================================================= TESTING: consistencyChecks from config.packages.PTScotch(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.PTScotch 0.000861 ============================================================================================= TESTING: consistencyChecks from config.packages.mmg(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mmg(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mmg 0.000806 ============================================================================================= TESTING: consistencyChecks from config.packages.parmmg(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.parmmg(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.parmmg 0.000811 ============================================================================================= TESTING: consistencyChecks from config.packages.Zoltan(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Zoltan(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Zoltan 0.000808 ============================================================================================= TESTING: consistencyChecks from config.packages.ADIOS(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADIOS(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS 0.000813 ============================================================================================= TESTING: consistencyChecks from config.packages.openmp(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openmp(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.openmp 0.000752 ============================================================================================= TESTING: consistencyChecks from config.packages.viennacl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.viennacl 0.000802 ============================================================================================= TESTING: consistencyChecks from config.packages.ColPack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ColPack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ColPack 0.000810 ============================================================================================= TESTING: consistencyChecks from config.packages.ADOLC(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.000810 ============================================================================================= TESTING: consistencyChecks from config.packages.openblas(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openblas(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.openblas 0.000833 ============================================================================================= TESTING: consistencyChecks from config.packages.blis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.blis(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.blis 0.000990 ============================================================================================= TESTING: consistencyChecks from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.f2cblaslapack 0.000783 ============================================================================================= TESTING: consistencyChecks from config.packages.BlasLapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.BlasLapack(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:454) ================================================================================ Checking for BLAS and LAPACK in fblaslapack ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:109) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Checking for functions [ddot_] in library ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libfblas.a'] ['libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64', '-Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64', '-L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64', '-Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib', '-L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib', '-Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread'] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lfblas -lm -lstdc++ -ldl -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl Defined "HAVE_LIBFBLAS" to "1" Checking for functions [dgetrs_] in library ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libflapack.a'] ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libfblas.a', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64', '-Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64', '-L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64', '-Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib', '-L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib', '-Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread'] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } int main() { _check_dgetrs_();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lflapack -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lfblas -lm -lstdc++ -ldl -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl Defined "HAVE_LIBFLAPACK" to "1" Checking for functions [dgeev_] in library ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libflapack.a'] ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libfblas.a', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64', '-Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64', '-L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64', '-Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib', '-L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib', '-Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread'] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } int main() { _check_dgeev_();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lflapack -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lfblas -lm -lstdc++ -ldl -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl Defined "HAVE_LIBFLAPACK" to "1" Found Fortran mangling on BLAS/LAPACK which is underscore Defined "BLASLAPACK_UNDERSCORE" to "1" ============================================================================================= TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:638) Do the BLAS/LAPACK libraries have a valid lsame() function with correct binding. Checking for functions [lsame_] in library ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libflapack.a', '/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libfblas.a', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64', '-Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64', '-L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64', '-Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib', '-L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib', '-Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } int main() { _check_lsame_();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lflapack -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lfblas -lm -lstdc++ -ldl -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl Defined "HAVE_LIBFLAPACK" to "1" Defined "HAVE_LIBFBLAS" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBSTDC__" to "1" Defined "HAVE_LIBDL" to "1" Defined "HAVE_LIBMPI_USEMPIF08" to "1" Defined "HAVE_LIBMPI_USEMPI_IGNORE_TKR" to "1" Defined "HAVE_LIBMPI_MPIFH" to "1" Defined "HAVE_LIBMPI" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBGCC_S" to "1" Defined "HAVE_LIBQUADMATH" to "1" Defined "HAVE_LIBPTHREAD" to "1" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.setCompilers/libconftest.so -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.setCompilers/conftest.o -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -lflapack -lfblas -lflapack -lfblas -lm -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl ============================================================================================= TESTING: checkRuntimeIssues from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:697) Determines if BLAS/LAPACK routines use 32 or 64 bit integers 32 bit blas indices based on the BLAS/LAPACK library being used ============================================================================================= TESTING: checkCHeaders from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:529) Check for cblas.h and lapacke.h ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['cblas.h', 'lapacke.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.packages.cuda -I/tmp/petsc-QOJMfI/config.packages.zlib -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.headers /tmp/petsc-QOJMfI/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conftest.c" # 1 "/tmp/petsc-QOJMfI/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 # 1 "/tmp/petsc-QOJMfI/config.headers/conffix.h" 1 # 3 "/tmp/petsc-QOJMfI/config.headers/conftest.c" 2 stderr: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: cblas.h: No such file or directory #include ^~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: cblas.h: No such file or directory #include ^~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-QOJMfI/config.headers/conftest.c:3:10: fatal error: cblas.h: No such file or directory #include ^~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: checkVersion from config.packages.BlasLapack(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.BlasLapack(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.BlasLapack 1.183342 ============================================================================================= TESTING: consistencyChecks from config.packages.sundials2(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sundials2(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.sundials2 0.000940 ============================================================================================= TESTING: consistencyChecks from config.packages.spai(config/BuildSystem/config/packages/spai.py:53) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.spai(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.spai 0.001071 ============================================================================================= TESTING: consistencyChecks from config.packages.pARMS(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pARMS(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pARMS 0.000789 ============================================================================================= TESTING: consistencyChecks from config.packages.p4est(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.p4est(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional p4est Looking for P4EST at git.p4est, hg.p4est or a directory starting with ['p4est'] Found a copy of P4EST in git.p4est Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', '1727693b446ee0c987be701320db0cd5de617cfc^{commit}'] Executing: ['git', 'rev-parse', '1727693b446ee0c987be701320db0cd5de617cfc'] stdout: 1727693b446ee0c987be701320db0cd5de617cfc Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing p4est.petscconf Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '1727693b446ee0c987be701320db0cd5de617cfc'] Looking for P4EST at git.p4est, hg.p4est or a directory starting with ['p4est'] Found a copy of P4EST in git.p4est Executing: ['git', 'submodule', 'update', '--init'] Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -v Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -V Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 --version stdout: GNU Fortran (GCC) 8.3.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -V Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 --version stdout: GNU Fortran (GCC) 8.3.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -V Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 --version stdout: GNU Fortran (GCC) 8.3.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Makefile /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/pkg.conf.p4est has correct checksum Commit file /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/pkg.gitcommit.p4est has correct checksum Do not need to rebuild P4EST Checking for library in Download P4EST: ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libp4est.a', 'libsc.a'] Contents: ['include', 'tests', 'bin', 'etc', 'obj', 'externalpackages', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [p4est_init] in library ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libp4est.a', 'libsc.a'] ['libz.a', '/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libflapack.a', '/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libfblas.a', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64', '-Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64', '-L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64', '-Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib', '-L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib', '-Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread'] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char p4est_init(); static void _check_p4est_init() { p4est_init(); } int main() { _check_p4est_init();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lp4est -lsc -lz -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lflapack -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lfblas -lm -lstdc++ -ldl -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl Defined "HAVE_LIBP4EST" to "1" Defined "HAVE_LIBSC" to "1" Checking for optional headers [] in Download P4EST: ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Found header files [] in ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking for headers ['p4est_bits.h'] in Download P4EST: ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['p4est_bits.h'] in ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking include with compiler flags var CPPFLAGS ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.packages.cuda -I/tmp/petsc-QOJMfI/config.packages.zlib -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.headers -I/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include /tmp/petsc-QOJMfI/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['p4est_bits.h'] in ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkVersion from config.packages.p4est(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.p4est(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.p4est 1.024110 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/packages/mkl_sparse_optimize.py:48) ============================================================================================= TESTING: checkVersion from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.mkl_sparse_optimize 0.001740 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_sparse(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.mkl_sparse(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.mkl_sparse(config/BuildSystem/config/packages/mkl_sparse.py:21) ============================================================================================= TESTING: checkVersion from config.packages.mkl_sparse(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.mkl_sparse(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.mkl_sparse 0.001365 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_cpardiso(config/BuildSystem/config/packages/mkl_cpardiso.py:20) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mkl_cpardiso 0.000996 ============================================================================================= TESTING: consistencyChecks from config.packages.kokkos(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.kokkos(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.kokkos(config/BuildSystem/config/packages/kokkos.py:169) ================================================================================== Checking for a functional kokkos Looking for KOKKOS at git.kokkos, hg.kokkos or a directory starting with ['kokkos'] Found a copy of KOKKOS in git.kokkos Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'd4ed86ffb1b156faaa0f936ce839cfd6d3282478^{commit}'] Executing: ['git', 'rev-parse', 'd4ed86ffb1b156faaa0f936ce839cfd6d3282478'] stdout: d4ed86ffb1b156faaa0f936ce839cfd6d3282478 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing kokkos.petscconf Removing petsc-build/ Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', 'd4ed86ffb1b156faaa0f936ce839cfd6d3282478'] Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -V Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 --version stdout: GNU Fortran (GCC) 8.3.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -V Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 --version stdout: GNU Fortran (GCC) 8.3.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -V Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 --version stdout: GNU Fortran (GCC) 8.3.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Removing configure arguments ['-DCMAKE_CXX_COMPILER="/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx"'] Removing configure arguments ['-DCMAKE_CXX_STANDARD=14'] Have to rebuild KOKKOS, /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/kokkos.petscconf != /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/pkg.conf.kokkos ============================================================================================= Configuring KOKKOS with cmake; this may take several minutes ============================================================================================= Executing: /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc -DCMAKE_INSTALL_NAME_DIR:STRING="/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib" -DCMAKE_INSTALL_LIBDIR:STRING="lib" -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER="/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc" -DMPI_C_COMPILER="/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2" -DCMAKE_C_FLAGS_DEBUG:STRING="-g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2" -DCMAKE_C_FLAGS_RELEASE:STRING="-g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2" -DMPI_CXX_COMPILER="/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx" -DCMAKE_CXX_FLAGS:STRING="-g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC" -DCMAKE_CXX_FLAGS_DEBUG:STRING="-g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC" -DCMAKE_CXX_FLAGS_RELEASE:STRING="-g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC" -DCMAKE_Fortran_COMPILER="/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90" -DMPI_Fortran_COMPILER="/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90" -DCMAKE_Fortran_FLAGS:STRING="-g -fPIC -O2" -DCMAKE_Fortran_FLAGS_DEBUG:STRING="-g -fPIC -O2" -DCMAKE_Fortran_FLAGS_RELEASE:STRING="-g -fPIC -O2" -DBUILD_SHARED_LIBS:BOOL=ON -DUSE_XSDK_DEFAULTS=YES -DXSDK_ENABLE_DEBUG=NO -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON -DCMAKE_BUILD_WITH_INSTALL_RPATH:BOOL=ON -DKokkos_ENABLE_MPI=ON -DKokkos_ENABLE_SERIAL=ON -DKokkos_ENABLE_CUDA=ON -DKOKKOS_CUDA_OPTIONS="-Xcompiler;-rdynamic;-DLANDAU_DIM=2;-DLANDAU_MAX_SPECIES=10;-DPETSC_HAVE_CUDA_ATOMIC;-DLANDAU_MAX_Q=4;-Xcompiler;-fPIC;-O3;;-gencode;arch=compute_80,code=sm_80;;-I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include;-Wno-deprecated-gpu-targets;" -DCMAKE_CXX_COMPILER=/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKokkos_ARCH_AMPERE80=ON -DKokkos_ENABLE_CUDA_LAMBDA:BOOL=ON -DCMAKE_CXX_STANDARD="14" -DKokkos_ENABLE_AGGRESSIVE_VECTORIZATION=ON stdout: -- Setting default Kokkos CXX standard to 14 -- The CXX compiler identification is GNU 8.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Setting policy CMP0074 to use _ROOT variables -- The project name is: Kokkos -- Compiler Version: 11.1.105 -- Using -std=c++14 for C++14 standard as feature -- Built-in Execution Spaces: -- Device Parallel: Kokkos::Cuda -- Host Parallel: NoTypeDefined -- Host Serial: SERIAL -- -- Architectures: -- AMPERE80 -- Found CUDAToolkit: /usr/common/software/sles15_cgpu/cuda/11.1.1/include (found version "11.1.105") -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found TPLCUDA: TRUE -- Found TPLLIBDL: /usr/lib64/libdl.so -- Kokkos Devices: CUDA;SERIAL, Kokkos Backends: CUDA;SERIAL -- Configuring done -- Generating done -- Build files have been written to: /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build ============================================================================================= Compiling and installing KOKKOS; this may take several minutes ============================================================================================= Executing: /usr/bin/gmake -j8 -l113.6 stdout: /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -S/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos -B/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_progress_start /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/CMakeFiles /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' /usr/bin/gmake -f core/src/CMakeFiles/kokkoscore.dir/build.make core/src/CMakeFiles/kokkoscore.dir/depend gmake[2]: Entering directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build && /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_depends "Unix Makefiles" /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src/CMakeFiles/kokkoscore.dir/DependInfo.cmake --color= Scanning dependencies of target kokkoscore gmake[2]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' /usr/bin/gmake -f core/src/CMakeFiles/kokkoscore.dir/build.make core/src/CMakeFiles/kokkoscore.dir/build gmake[2]: Entering directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' [ 4%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_CPUDiscovery.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_CPUDiscovery.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_CPUDiscovery.cpp [ 8%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_Core.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_Core.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_Core.cpp [ 16%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_Error.cpp.o [ 16%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_HostBarrier.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_Error.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_Error.cpp cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_HostBarrier.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_HostBarrier.cpp [ 20%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_ExecPolicy.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_ExecPolicy.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_ExecPolicy.cpp [ 24%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_HostSpace.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_HostSpace.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_HostSpace.cpp [ 28%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_HostSpace_deepcopy.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_HostSpace_deepcopy.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_HostSpace_deepcopy.cpp [ 32%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_HostThreadTeam.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_HostThreadTeam.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_HostThreadTeam.cpp nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. [ 36%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_MemoryPool.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_MemoryPool.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_MemoryPool.cpp nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. [ 40%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_MemorySpace.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_MemorySpace.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_MemorySpace.cpp nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. [ 44%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_NumericTraits.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_NumericTraits.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_NumericTraits.cpp [ 48%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_Profiling.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_Profiling.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_Profiling.cpp nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. [ 52%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_Serial.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_Serial.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_Serial.cpp nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. [ 56%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_Serial_Task.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_Serial_Task.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_Serial_Task.cpp [ 60%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_SharedAlloc.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_SharedAlloc.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_SharedAlloc.cpp nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. 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[ 76%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/Cuda/Kokkos_CudaSpace.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/Cuda/Kokkos_CudaSpace.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/Cuda/Kokkos_CudaSpace.cpp nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. 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[ 92%] Linking CXX shared library libkokkoscore.so cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_link_script CMakeFiles/kokkoscore.dir/link.txt --verbose=1 /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -DKOKKOS_DEPENDENCE -arch=sm_80 -shared -Wl,-soname,libkokkoscore.so.3.4 -o libkokkoscore.so.3.4.99 CMakeFiles/kokkoscore.dir/impl/Kokkos_CPUDiscovery.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_Core.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_Error.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_ExecPolicy.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_HostBarrier.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_HostSpace.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_HostSpace_deepcopy.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_HostThreadTeam.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_MemoryPool.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_MemorySpace.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_NumericTraits.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_Profiling.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_Serial.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_Serial_Task.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_SharedAlloc.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_Spinwait.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_Stacktrace.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_hwloc.cpp.o CMakeFiles/kokkoscore.dir/Cuda/Kokkos_CudaSpace.cpp.o CMakeFiles/kokkoscore.dir/Cuda/Kokkos_Cuda_Instance.cpp.o CMakeFiles/kokkoscore.dir/Cuda/Kokkos_Cuda_Locks.cpp.o CMakeFiles/kokkoscore.dir/Cuda/Kokkos_Cuda_Task.cpp.o /usr/lib64/libdl.so /usr/lib64/libcuda.so /usr/common/software/sles15_cgpu/cuda/11.1.1/lib64/libcudart.so nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_symlink_library libkokkoscore.so.3.4.99 libkokkoscore.so.3.4 libkokkoscore.so gmake[2]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' [ 92%] Built target kokkoscore /usr/bin/gmake -f containers/src/CMakeFiles/kokkoscontainers.dir/build.make containers/src/CMakeFiles/kokkoscontainers.dir/depend gmake[2]: Entering directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build && /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_depends "Unix Makefiles" /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/containers/src /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/containers/src /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/containers/src/CMakeFiles/kokkoscontainers.dir/DependInfo.cmake --color= Scanning dependencies of target kokkoscontainers gmake[2]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' /usr/bin/gmake -f containers/src/CMakeFiles/kokkoscontainers.dir/build.make containers/src/CMakeFiles/kokkoscontainers.dir/build gmake[2]: Entering directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' [ 96%] Building CXX object containers/src/CMakeFiles/kokkoscontainers.dir/impl/Kokkos_UnorderedMap_impl.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/containers/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscontainers_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/containers/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/containers/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscontainers.dir/impl/Kokkos_UnorderedMap_impl.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/containers/src/impl/Kokkos_UnorderedMap_impl.cpp nvcc_wrapper - 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[100%] Linking CXX shared library libkokkoscontainers.so cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/containers/src && /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_link_script CMakeFiles/kokkoscontainers.dir/link.txt --verbose=1 /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -DKOKKOS_DEPENDENCE -arch=sm_80 -shared -Wl,-soname,libkokkoscontainers.so.3.4 -o libkokkoscontainers.so.3.4.99 CMakeFiles/kokkoscontainers.dir/impl/Kokkos_UnorderedMap_impl.cpp.o ../../core/src/libkokkoscore.so.3.4.99 /usr/lib64/libcuda.so /usr/common/software/sles15_cgpu/cuda/11.1.1/lib64/libcudart.so /usr/lib64/libdl.so nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/containers/src && /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_symlink_library libkokkoscontainers.so.3.4.99 libkokkoscontainers.so.3.4 libkokkoscontainers.so gmake[2]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' [100%] Built target kokkoscontainers gmake[1]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_progress_start /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/CMakeFiles 0 Executing: /usr/bin/gmake install stdout: /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -S/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos -B/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_progress_start /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/CMakeFiles /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' /usr/bin/gmake -f core/src/CMakeFiles/kokkoscore.dir/build.make core/src/CMakeFiles/kokkoscore.dir/depend gmake[2]: Entering 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/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/containers/src /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/containers/src /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/containers/src/CMakeFiles/kokkoscontainers.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' /usr/bin/gmake -f containers/src/CMakeFiles/kokkoscontainers.dir/build.make containers/src/CMakeFiles/kokkoscontainers.dir/build gmake[2]: Entering directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' gmake[2]: Nothing to be done for 'containers/src/CMakeFiles/kokkoscontainers.dir/build'. gmake[2]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' [100%] Built target kokkoscontainers gmake[1]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_progress_start /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/CMakeFiles 0 /usr/bin/gmake -f CMakeFiles/Makefile2 preinstall gmake[1]: Entering directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' gmake[1]: Nothing to be done for 'preinstall'. gmake[1]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' Install the project... /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Graph.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_HPX.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Graph_fwd.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Half.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_TaskScheduler.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Pair.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_TaskScheduler_fwd.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HPX -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HPX/Kokkos_HPX_WorkGraphPolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HPX/Kokkos_HPX_Task.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HPX/Kokkos_HPX_ChunkedRoundRobinExecutor.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Instance.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_KernelLaunch.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Team.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Locks.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_GraphNodeKernel.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Atomic_Intrinsics_Restore_Builtins.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Parallel.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Graph_Impl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_BlockSize_Deduction.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Alloc.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_abort.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Vectorization.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Task.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_UniqueToken.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Error.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Half.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_WorkGraphPolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_ReduceScan.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_MDRangePolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_View.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_GraphNode_Impl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Version_9_8_Compatibility.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Atomic_Intrinsics.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_IterationPatternTrait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_OccupancyControlTrait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_WorkTagTrait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_Traits_fwd.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_GraphKernelTrait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_PolicyTraitMatcher.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_IndexTypeTrait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_ScheduleTrait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_ExecutionSpaceTrait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_LaunchBoundsTrait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_WorkItemPropertyTrait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_PolicyTraitAdaptor.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Error.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Parallel_MDRange.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Instance.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Team.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_WorkGraphPolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Abort.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Shuffle_Reduce.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_KernelLaunch.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_UniqueToken.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Atomic.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Vectorization.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Parallel_Team.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_ReduceScan.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Locks.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_BlockSize_Deduction.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Parallel_Range.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_MDRangePolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_WorkGraphPolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Profiling_ProfileSection.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMP -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMP/Kokkos_OpenMP_Parallel.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMP/Kokkos_OpenMP_Team.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMP/Kokkos_OpenMP_WorkGraphPolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMP/Kokkos_OpenMP_Exec.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMP/Kokkos_OpenMP_Task.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Tuners.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl/Kokkos_Declare_OPENMP.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl/Kokkos_Declare_THREADS.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl/Kokkos_Declare_HPX.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl/Kokkos_Declare_OPENMPTARGET.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl/Kokkos_Declare_CUDA.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl/Kokkos_Declare_HBWSpace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl/Kokkos_Declare_HIP.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl/Kokkos_Declare_SERIAL.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl/Kokkos_Declare_SYCL.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_GraphNode.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_CopyViews.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_hwloc.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_SYCL_Space.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Complex.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/KokkosExp_MDRangePolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Cuda.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_AnonymousSpace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_TaskPolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_GraphImpl_fwd.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Exchange.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_FunctorAdapter.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_HostSharedPtr.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_LIFO.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_PhysicalLayout.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_MemoryPoolAllocator.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Serial_WorkGraphPolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Error.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_GraphImpl_Utilities.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_SharedAlloc_timpl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Serial_Task.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Store.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskNode.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_SingleTaskQueue.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ChaseLev.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskQueue_impl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Default_GraphNodeKernel.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ViewLayoutTiled.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ViewCtor.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Decrement.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_BitOps.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Memory_Fence.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_FunctorAnalysis.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Profiling_Interface.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Volatile_Load.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Compare_Exchange_Strong.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskQueueMultiple_impl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskQueueMultiple.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Utilities.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Memory_Order.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/KokkosExp_ViewMapping.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_MultipleTaskQueue.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/KokkosExp_Host_IterateTile.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/KokkosExp_IterateTileGPU.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Fetch_Sub.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_SimpleTaskScheduler.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_LinkedListNode.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_HostBarrier.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ClockTic.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Fetch_Add.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_GraphImpl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_GraphNodeCustomization.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Stacktrace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Default_Graph_fwd.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Default_Graph_Impl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Profiling_DeviceInfo.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_MinMax.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskPolicyData.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Generic_Secondary.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Spinwait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Tags.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_GraphNodeImpl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Profiling.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Load.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ViewTracker.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskQueueMemoryManager.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Timer.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ConcurrentBitset.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskBase.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Tools.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Profiling_C_Interface.h -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_SharedAlloc.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ViewUniformType.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Traits.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Compare_Exchange_Weak.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Windows.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Generic.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskQueueCommon.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskQueue.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Default_GraphNode_Impl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Fetch_And.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_HostThreadTeam.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskTeamMember.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_CPUDiscovery.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_HostSpace_deepcopy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ExecSpaceInitializer.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ViewArray.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_OptionalRef.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Assembly.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_View.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_AnalyzePolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ViewMapping.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Fetch_Or.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Increment.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_MemorySpace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_VLAEmulation.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskResult.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Combined_Reducer.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_FixedBufferMemoryPool.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_EBO.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Extents.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_MDRangePolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_DeepCopy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_Abort.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_Parallel_Scan.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_Parallel_Range.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_Team.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_Instance.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_Parallel_Reduce.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_Parallel_Team.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_UniqueToken.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_HIP_Space.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Serial.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMPTarget -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMPTarget/Kokkos_OpenMPTarget_Exec.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMPTarget/Kokkos_OpenMPTarget_Error.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMPTarget/Kokkos_OpenMPTarget_UniqueToken.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMPTarget/Kokkos_OpenMPTarget_Abort.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMPTarget/Kokkos_OpenMPTarget_Parallel.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMPTarget/Kokkos_OpenMPTarget_Instance.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMPTarget/Kokkos_OpenMPTarget_Parallel_MDRange.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMPTarget/Kokkos_OpenMPTarget_Task.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Layout.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Threads -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Threads/Kokkos_ThreadsExec.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Threads/Kokkos_Threads_Parallel.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Threads/Kokkos_ThreadsTeam.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Threads/Kokkos_Threads_WorkGraphPolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Threads.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_MemoryPool.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Core_fwd.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_OpenMPTargetSpace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd/Kokkos_Fwd_SYCL.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd/Kokkos_Fwd_OPENMPTARGET.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd/Kokkos_Fwd_OPENMP.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd/Kokkos_Fwd_HBWSpace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd/Kokkos_Fwd_THREADS.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd/Kokkos_Fwd_SERIAL.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd/Kokkos_Fwd_HPX.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd/Kokkos_Fwd_CUDA.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd/Kokkos_Fwd_HIP.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_UniqueToken.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Parallel_Reduce.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Macros.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Core.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_ExecPolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_ScratchSpace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_LogicalSpaces.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Future.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Crs.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_CudaSpace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Vectorization.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_MasterLock.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_MathematicalFunctions.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Timer.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_SYCL.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Atomic.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/setup -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/setup/Kokkos_Setup_Cuda.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/setup/Kokkos_Setup_HIP.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/setup/Kokkos_Setup_SYCL.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_MemoryTraits.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_HBWSpace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Array.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_HostSpace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_NumericTraits.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Parallel.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_View.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_AcquireUniqueTokenImpl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Concepts.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_HIP.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_PointerOwnership.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Rank.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_OpenMPTarget.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_OpenMP.hpp -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscore.so.3.4.99 -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscore.so.3.4 -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscore.so -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscore.so.3.4.99 -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscore.so.3.4 -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscore.so -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_StaticCrsGraph_factory.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Bitset_impl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_UnorderedMap_impl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Functional_impl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_DualView.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_StaticCrsGraph.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_DynamicView.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Bitset.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Vector.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Functional.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_OffsetView.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_ErrorReporter.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_ScatterView.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_UnorderedMap.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_DynRankView.hpp -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscontainers.so.3.4.99 -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscontainers.so.3.4 -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscontainers.so -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscontainers.so.3.4.99 -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscontainers.so.3.4 -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscontainers.so -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Sort.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Random.hpp -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/cmake/Kokkos/KokkosConfig.cmake -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/cmake/Kokkos/KokkosConfigCommon.cmake -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/cmake/Kokkos/KokkosConfigVersion.cmake -- Old export file "/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/cmake/Kokkos/KokkosTargets.cmake" will be replaced. Removing files [/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/cmake/Kokkos/KokkosTargets-release.cmake]. -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/cmake/Kokkos/KokkosTargets.cmake -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/cmake/Kokkos/KokkosTargets-release.cmake -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/KokkosCore_config.h -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/nvcc_wrapper -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/hpcbind -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/kokkos_launch_compiler -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/KokkosCore_config.h -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/KokkosCore_Config_FwdBackend.hpp -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/KokkosCore_Config_SetupBackend.hpp -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/KokkosCore_Config_DeclareBackend.hpp -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/KokkosCore_Config_PostInclude.hpp ********Output of running make on KOKKOS follows ******* -- Setting default Kokkos CXX standard to 14 -- The CXX compiler identification is GNU 8.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Setting policy CMP0074 to use _ROOT variables -- The project name is: Kokkos -- Compiler Version: 11.1.105 -- Using -std=c++14 for C++14 standard as feature -- Built-in Execution Spaces: -- Device Parallel: Kokkos::Cuda -- Host Parallel: NoTypeDefined -- Host Serial: SERIAL -- -- Architectures: -- AMPERE80 -- Found CUDAToolkit: /usr/common/software/sles15_cgpu/cuda/11.1.1/include (found version "11.1.105") -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found TPLCUDA: TRUE -- Found TPLLIBDL: /usr/lib64/libdl.so -- Kokkos Devices: CUDA;SERIAL, Kokkos Backends: CUDA;SERIAL -- Configuring done -- Generating done -- Build files have been written to: /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-buildCMake Warning at cmake/kokkos_check_env.cmake:10 (MESSAGE): CRAYPE_LINK_TYPE is not set. 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[ 36%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_MemoryPool.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_MemoryPool.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_MemoryPool.cpp nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. [ 40%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_MemorySpace.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_MemorySpace.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_MemorySpace.cpp nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. [ 44%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_NumericTraits.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_NumericTraits.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_NumericTraits.cpp [ 48%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_Profiling.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_Profiling.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_Profiling.cpp nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. [ 52%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_Serial.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_Serial.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_Serial.cpp nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. [ 56%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_Serial_Task.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_Serial_Task.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_Serial_Task.cpp [ 60%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_SharedAlloc.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_SharedAlloc.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_SharedAlloc.cpp nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. [ 64%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_Spinwait.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_Spinwait.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_Spinwait.cpp nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. [ 68%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_Stacktrace.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_Stacktrace.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_Stacktrace.cpp [ 72%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/impl/Kokkos_hwloc.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/impl/Kokkos_hwloc.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/impl/Kokkos_hwloc.cpp nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. [ 76%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/Cuda/Kokkos_CudaSpace.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/Cuda/Kokkos_CudaSpace.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/Cuda/Kokkos_CudaSpace.cpp nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. [ 80%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/Cuda/Kokkos_Cuda_Instance.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/Cuda/Kokkos_Cuda_Instance.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/Cuda/Kokkos_Cuda_Instance.cpp nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. [ 84%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/Cuda/Kokkos_Cuda_Locks.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/Cuda/Kokkos_Cuda_Locks.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/Cuda/Kokkos_Cuda_Locks.cpp [ 88%] Building CXX object core/src/CMakeFiles/kokkoscore.dir/Cuda/Kokkos_Cuda_Task.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscore_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscore.dir/Cuda/Kokkos_Cuda_Task.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src/Cuda/Kokkos_Cuda_Task.cpp nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. [ 92%] Linking CXX shared library libkokkoscore.so cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_link_script CMakeFiles/kokkoscore.dir/link.txt --verbose=1 /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -DKOKKOS_DEPENDENCE -arch=sm_80 -shared -Wl,-soname,libkokkoscore.so.3.4 -o libkokkoscore.so.3.4.99 CMakeFiles/kokkoscore.dir/impl/Kokkos_CPUDiscovery.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_Core.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_Error.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_ExecPolicy.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_HostBarrier.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_HostSpace.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_HostSpace_deepcopy.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_HostThreadTeam.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_MemoryPool.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_MemorySpace.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_NumericTraits.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_Profiling.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_Serial.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_Serial_Task.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_SharedAlloc.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_Spinwait.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_Stacktrace.cpp.o CMakeFiles/kokkoscore.dir/impl/Kokkos_hwloc.cpp.o CMakeFiles/kokkoscore.dir/Cuda/Kokkos_CudaSpace.cpp.o CMakeFiles/kokkoscore.dir/Cuda/Kokkos_Cuda_Instance.cpp.o CMakeFiles/kokkoscore.dir/Cuda/Kokkos_Cuda_Locks.cpp.o CMakeFiles/kokkoscore.dir/Cuda/Kokkos_Cuda_Task.cpp.o /usr/lib64/libdl.so /usr/lib64/libcuda.so /usr/common/software/sles15_cgpu/cuda/11.1.1/lib64/libcudart.so nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src && /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_symlink_library libkokkoscore.so.3.4.99 libkokkoscore.so.3.4 libkokkoscore.so gmake[2]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' [ 92%] Built target kokkoscore /usr/bin/gmake -f containers/src/CMakeFiles/kokkoscontainers.dir/build.make containers/src/CMakeFiles/kokkoscontainers.dir/depend gmake[2]: Entering directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build && /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_depends "Unix Makefiles" /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/containers/src /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/containers/src /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/containers/src/CMakeFiles/kokkoscontainers.dir/DependInfo.cmake --color= Scanning dependencies of target kokkoscontainers gmake[2]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' /usr/bin/gmake -f containers/src/CMakeFiles/kokkoscontainers.dir/build.make containers/src/CMakeFiles/kokkoscontainers.dir/build gmake[2]: Entering directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' [ 96%] Building CXX object containers/src/CMakeFiles/kokkoscontainers.dir/impl/Kokkos_UnorderedMap_impl.cpp.o cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/containers/src && /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -DKOKKOS_DEPENDENCE -Dkokkoscontainers_EXPORTS -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/containers/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/containers/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src -I/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -fPIC -expt-extended-lambda -Wext-lambda-captures-this -arch=sm_80 -std=c++14 -o CMakeFiles/kokkoscontainers.dir/impl/Kokkos_UnorderedMap_impl.cpp.o -c /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/containers/src/impl/Kokkos_UnorderedMap_impl.cpp nvcc_wrapper - 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[100%] Linking CXX shared library libkokkoscontainers.so cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/containers/src && /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_link_script CMakeFiles/kokkoscontainers.dir/link.txt --verbose=1 /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/bin/nvcc_wrapper -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC -DKOKKOS_DEPENDENCE -arch=sm_80 -shared -Wl,-soname,libkokkoscontainers.so.3.4 -o libkokkoscontainers.so.3.4.99 CMakeFiles/kokkoscontainers.dir/impl/Kokkos_UnorderedMap_impl.cpp.o ../../core/src/libkokkoscore.so.3.4.99 /usr/lib64/libcuda.so /usr/common/software/sles15_cgpu/cuda/11.1.1/lib64/libcudart.so /usr/lib64/libdl.so nvcc_wrapper - *warning* you have set multiple optimization flags (-O*), only the last is used because nvcc can only accept a single optimization setting. cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/containers/src && /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_symlink_library libkokkoscontainers.so.3.4.99 libkokkoscontainers.so.3.4 libkokkoscontainers.so gmake[2]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' [100%] Built target kokkoscontainers gmake[1]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_progress_start /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/CMakeFiles 0/global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -S/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos -B/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_progress_start /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/CMakeFiles /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' /usr/bin/gmake -f core/src/CMakeFiles/kokkoscore.dir/build.make core/src/CMakeFiles/kokkoscore.dir/depend gmake[2]: Entering directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build && /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_depends "Unix Makefiles" /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/core/src /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/core/src/CMakeFiles/kokkoscore.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' /usr/bin/gmake -f core/src/CMakeFiles/kokkoscore.dir/build.make core/src/CMakeFiles/kokkoscore.dir/build gmake[2]: Entering directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' gmake[2]: Nothing to be done for 'core/src/CMakeFiles/kokkoscore.dir/build'. gmake[2]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' [ 92%] Built target kokkoscore /usr/bin/gmake -f containers/src/CMakeFiles/kokkoscontainers.dir/build.make containers/src/CMakeFiles/kokkoscontainers.dir/depend gmake[2]: Entering directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' cd /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build && /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_depends "Unix Makefiles" /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/containers/src /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/containers/src /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/containers/src/CMakeFiles/kokkoscontainers.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' /usr/bin/gmake -f containers/src/CMakeFiles/kokkoscontainers.dir/build.make containers/src/CMakeFiles/kokkoscontainers.dir/build gmake[2]: Entering directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' gmake[2]: Nothing to be done for 'containers/src/CMakeFiles/kokkoscontainers.dir/build'. gmake[2]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' [100%] Built target kokkoscontainers gmake[1]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -E cmake_progress_start /global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build/CMakeFiles 0 /usr/bin/gmake -f CMakeFiles/Makefile2 preinstall gmake[1]: Entering directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' gmake[1]: Nothing to be done for 'preinstall'. gmake[1]: Leaving directory '/global/u2/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/externalpackages/git.kokkos/petsc-build' Install the project... /global/common/sw/cray/cnl7/haswell/cmake/cray-cnl7-haswell/gcc-8.3.0/cmake/3.18.2/iteh6ngn/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Graph.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_HPX.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Graph_fwd.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Half.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_TaskScheduler.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Pair.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_TaskScheduler_fwd.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HPX -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HPX/Kokkos_HPX_WorkGraphPolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HPX/Kokkos_HPX_Task.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HPX/Kokkos_HPX_ChunkedRoundRobinExecutor.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Instance.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_KernelLaunch.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Team.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Locks.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_GraphNodeKernel.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Atomic_Intrinsics_Restore_Builtins.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Parallel.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Graph_Impl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_BlockSize_Deduction.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Alloc.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_abort.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Vectorization.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Task.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_UniqueToken.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Error.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Half.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_WorkGraphPolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_ReduceScan.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_MDRangePolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_View.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_GraphNode_Impl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Version_9_8_Compatibility.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Cuda/Kokkos_Cuda_Atomic_Intrinsics.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_IterationPatternTrait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_OccupancyControlTrait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_WorkTagTrait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_Traits_fwd.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_GraphKernelTrait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_PolicyTraitMatcher.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_IndexTypeTrait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_ScheduleTrait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_ExecutionSpaceTrait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_LaunchBoundsTrait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_WorkItemPropertyTrait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/traits/Kokkos_PolicyTraitAdaptor.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Error.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Parallel_MDRange.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Instance.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Team.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_WorkGraphPolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Abort.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Shuffle_Reduce.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_KernelLaunch.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_UniqueToken.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Atomic.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Vectorization.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Parallel_Team.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_ReduceScan.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Locks.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_BlockSize_Deduction.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_Parallel_Range.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/HIP/Kokkos_HIP_MDRangePolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_WorkGraphPolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Profiling_ProfileSection.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMP -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMP/Kokkos_OpenMP_Parallel.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMP/Kokkos_OpenMP_Team.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMP/Kokkos_OpenMP_WorkGraphPolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMP/Kokkos_OpenMP_Exec.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMP/Kokkos_OpenMP_Task.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Tuners.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl/Kokkos_Declare_OPENMP.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl/Kokkos_Declare_THREADS.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl/Kokkos_Declare_HPX.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl/Kokkos_Declare_OPENMPTARGET.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl/Kokkos_Declare_CUDA.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl/Kokkos_Declare_HBWSpace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl/Kokkos_Declare_HIP.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl/Kokkos_Declare_SERIAL.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/decl/Kokkos_Declare_SYCL.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_GraphNode.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_CopyViews.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_hwloc.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_SYCL_Space.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Complex.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/KokkosExp_MDRangePolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Cuda.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_AnonymousSpace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_TaskPolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_GraphImpl_fwd.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Exchange.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_FunctorAdapter.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_HostSharedPtr.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_LIFO.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_PhysicalLayout.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_MemoryPoolAllocator.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Serial_WorkGraphPolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Error.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_GraphImpl_Utilities.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_SharedAlloc_timpl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Serial_Task.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Store.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskNode.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_SingleTaskQueue.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ChaseLev.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskQueue_impl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Default_GraphNodeKernel.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ViewLayoutTiled.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ViewCtor.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Decrement.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_BitOps.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Memory_Fence.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_FunctorAnalysis.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Profiling_Interface.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Volatile_Load.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Compare_Exchange_Strong.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskQueueMultiple_impl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskQueueMultiple.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Utilities.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Memory_Order.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/KokkosExp_ViewMapping.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_MultipleTaskQueue.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/KokkosExp_Host_IterateTile.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/KokkosExp_IterateTileGPU.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Fetch_Sub.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_SimpleTaskScheduler.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_LinkedListNode.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_HostBarrier.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ClockTic.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Fetch_Add.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_GraphImpl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_GraphNodeCustomization.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Stacktrace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Default_Graph_fwd.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Default_Graph_Impl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Profiling_DeviceInfo.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_MinMax.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskPolicyData.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Generic_Secondary.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Spinwait.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Tags.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_GraphNodeImpl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Profiling.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Load.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ViewTracker.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskQueueMemoryManager.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Timer.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ConcurrentBitset.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskBase.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Tools.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Profiling_C_Interface.h -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_SharedAlloc.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ViewUniformType.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Traits.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Compare_Exchange_Weak.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Windows.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Generic.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskQueueCommon.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskQueue.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Default_GraphNode_Impl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Fetch_And.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_HostThreadTeam.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskTeamMember.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_CPUDiscovery.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_HostSpace_deepcopy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ExecSpaceInitializer.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ViewArray.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_OptionalRef.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Assembly.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_View.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_AnalyzePolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_ViewMapping.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Fetch_Or.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Atomic_Increment.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_MemorySpace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_VLAEmulation.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_TaskResult.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Combined_Reducer.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_FixedBufferMemoryPool.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_EBO.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Extents.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_MDRangePolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_DeepCopy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_Abort.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_Parallel_Scan.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_Parallel_Range.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_Team.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_Instance.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_Parallel_Reduce.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_Parallel_Team.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/SYCL/Kokkos_SYCL_UniqueToken.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_HIP_Space.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Serial.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMPTarget -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMPTarget/Kokkos_OpenMPTarget_Exec.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMPTarget/Kokkos_OpenMPTarget_Error.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMPTarget/Kokkos_OpenMPTarget_UniqueToken.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMPTarget/Kokkos_OpenMPTarget_Abort.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMPTarget/Kokkos_OpenMPTarget_Parallel.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMPTarget/Kokkos_OpenMPTarget_Instance.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMPTarget/Kokkos_OpenMPTarget_Parallel_MDRange.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/OpenMPTarget/Kokkos_OpenMPTarget_Task.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Layout.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Threads -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Threads/Kokkos_ThreadsExec.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Threads/Kokkos_Threads_Parallel.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Threads/Kokkos_ThreadsTeam.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Threads/Kokkos_Threads_WorkGraphPolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Threads.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_MemoryPool.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Core_fwd.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_OpenMPTargetSpace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd/Kokkos_Fwd_SYCL.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd/Kokkos_Fwd_OPENMPTARGET.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd/Kokkos_Fwd_OPENMP.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd/Kokkos_Fwd_HBWSpace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd/Kokkos_Fwd_THREADS.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd/Kokkos_Fwd_SERIAL.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd/Kokkos_Fwd_HPX.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd/Kokkos_Fwd_CUDA.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/fwd/Kokkos_Fwd_HIP.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_UniqueToken.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Parallel_Reduce.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Macros.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Core.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_ExecPolicy.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_ScratchSpace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_LogicalSpaces.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Future.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Crs.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_CudaSpace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Vectorization.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_MasterLock.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_MathematicalFunctions.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Timer.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_SYCL.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Atomic.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/setup -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/setup/Kokkos_Setup_Cuda.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/setup/Kokkos_Setup_HIP.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/setup/Kokkos_Setup_SYCL.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_MemoryTraits.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_HBWSpace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Array.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_HostSpace.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_NumericTraits.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Parallel.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_View.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_AcquireUniqueTokenImpl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Concepts.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_HIP.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_PointerOwnership.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Rank.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_OpenMPTarget.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_OpenMP.hpp -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscore.so.3.4.99 -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscore.so.3.4 -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscore.so -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscore.so.3.4.99 -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscore.so.3.4 -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscore.so -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_StaticCrsGraph_factory.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Bitset_impl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_UnorderedMap_impl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/impl/Kokkos_Functional_impl.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_DualView.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_StaticCrsGraph.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_DynamicView.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Bitset.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Vector.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Functional.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_OffsetView.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_ErrorReporter.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_ScatterView.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_UnorderedMap.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_DynRankView.hpp -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscontainers.so.3.4.99 -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscontainers.so.3.4 -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscontainers.so -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscontainers.so.3.4.99 -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscontainers.so.3.4 -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscontainers.so -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Sort.hpp -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/Kokkos_Random.hpp -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/cmake/Kokkos/KokkosConfig.cmake -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/cmake/Kokkos/KokkosConfigCommon.cmake -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/cmake/Kokkos/KokkosConfigVersion.cmake -- Old export file "/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/cmake/Kokkos/KokkosTargets.cmake" will be replaced. Removing files [/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/cmake/Kokkos/KokkosTargets-release.cmake]. -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/cmake/Kokkos/KokkosTargets.cmake -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/cmake/Kokkos/KokkosTargets-release.cmake -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/KokkosCore_config.h -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/nvcc_wrapper -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/hpcbind -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/kokkos_launch_compiler -- Up-to-date: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/KokkosCore_config.h -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/KokkosCore_Config_FwdBackend.hpp -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/KokkosCore_Config_SetupBackend.hpp -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/KokkosCore_Config_DeclareBackend.hpp -- Installing: /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include/KokkosCore_Config_PostInclude.hpp********End of Output of running make on KOKKOS ******* Checking for library in Download KOKKOS: ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscontainers.a', 'libkokkoscore.a'] Contents: ['include', 'tests', 'bin', 'etc', 'obj', 'externalpackages', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [] in library ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscontainers.a', 'libkokkoscore.a'] ['/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64/libcufft.a', 'libcublas.a', 'libcudart.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libflapack.a', '/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libfblas.a', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64', '-Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64', '-L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64', '-Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib', '-L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib', '-Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread'] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ namespace Kokkos {void initialize(int&,char*[]);} static void _check_() { int one = 1;char* args[1];Kokkos::initialize(one,args);; } int main() { _check_();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lkokkoscontainers -lkokkoscore -Wl,-rpath,/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -L/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -lcufft -lcublas -lcudart -lcusparse -lcusolver -lcurand -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lflapack -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lfblas -lm -lstdc++ -ldl -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl Defined "HAVE_LIBKOKKOSCONTAINERS" to "1" Defined "HAVE_LIBKOKKOSCORE" to "1" Checking for optional headers [] in Download KOKKOS: ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Found header files [] in ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking for headers [] in Download KOKKOS: ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Defined make macro "KOKKOS_BIN" to "/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin" Defined make macro "KOKKOS_USE_CUDA_COMPILER" to "1" ============================================================================================= TESTING: checkVersion from config.packages.kokkos(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version For kokkos unable to find version information since includes and version includes are missing skipping version check ============================================================================================= TESTING: checkSharedLibrary from config.packages.kokkos(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.kokkos 29.548484 ============================================================================================= TESTING: consistencyChecks from config.packages.kokkos-kernels(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.kokkos-kernels(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.kokkos-kernels(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional kokkos-kernels Looking for KOKKOS-KERNELS at git.kokkos-kernels, hg.kokkos-kernels or a directory starting with ['kokkos-kernels'] Found a copy of KOKKOS-KERNELS in git.kokkos-kernels Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', '54e4213ca028163a76639d23b1204b213203bc79^{commit}'] Executing: ['git', 'rev-parse', '54e4213ca028163a76639d23b1204b213203bc79'] stdout: 54e4213ca028163a76639d23b1204b213203bc79 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing kokkos-kernels.petscconf Removing petsc-build/ Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '54e4213ca028163a76639d23b1204b213203bc79'] Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -V Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 --version stdout: GNU Fortran (GCC) 8.3.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -V Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 --version stdout: GNU Fortran (GCC) 8.3.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -V Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 --version stdout: GNU Fortran (GCC) 8.3.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Removing configure arguments ['-DCMAKE_CXX_COMPILER="/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx"'] Makefile /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/pkg.conf.kokkos-kernels has correct checksum Commit file /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/pkg.gitcommit.kokkos-kernels has correct checksum Do not need to rebuild KOKKOS-KERNELS Checking for library in Download KOKKOS-KERNELS: ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoskernels.a'] Contents: ['include', 'tests', 'bin', 'etc', 'obj', 'externalpackages', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [] in library ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoskernels.a'] ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libkokkoscontainers.a', 'libkokkoscore.a', '/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64/libcufft.a', 'libcublas.a', 'libcudart.a', 'libcusparse.a', 'libcusolver.a', 'libcurand.a', '/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libflapack.a', '/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib/libfblas.a', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc', '-Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64', '-L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64', '-Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64', '-L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64', '-Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib', '-L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib', '-Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '-lpthread'] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ namespace Kokkos {void initialize(int&,char*[]);} static void _check_() { int one = 1;char* args[1];Kokkos::initialize(one,args);; } int main() { _check_();; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -o /tmp/petsc-QOJMfI/config.libraries/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.o -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lkokkoskernels -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lkokkoscontainers -lkokkoscore -Wl,-rpath,/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -L/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -lcufft -lcublas -lcudart -lcusparse -lcusolver -lcurand -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lflapack -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lfblas -lm -lstdc++ -ldl -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl Defined "HAVE_LIBKOKKOSKERNELS" to "1" Checking for optional headers [] in Download KOKKOS-KERNELS: ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Found header files [] in ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] Checking for headers [] in Download KOKKOS-KERNELS: ['/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include', '/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib'] ============================================================================================= TESTING: checkVersion from config.packages.kokkos-kernels(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version For kokkos-kernels unable to find version information since includes and version includes are missing skipping version check ============================================================================================= TESTING: checkSharedLibrary from config.packages.kokkos-kernels(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.kokkos-kernels 3.406304 ============================================================================================= TESTING: consistencyChecks from config.packages.hpddm(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hpddm(config/BuildSystem/config/packages/hpddm.py:126) Defined make rule "hpddm-build" with dependencies "" and code [] Defined make rule "hpddm-install" with dependencies "" and code [] child config.packages.hpddm 0.001386 ============================================================================================= TESTING: consistencyChecks from config.packages.htool(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.htool(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.htool 0.000865 ============================================================================================= TESTING: consistencyChecks from config.packages.magma(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.magma(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.magma 0.000824 ============================================================================================= TESTING: consistencyChecks from config.packages.kblas(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.kblas(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.kblas 0.000769 ============================================================================================= TESTING: consistencyChecks from config.packages.hara(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hara(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.hara 0.000767 ============================================================================================= TESTING: consistencyChecks from config.packages.fftw(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.fftw(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.fftw 0.000781 ============================================================================================= TESTING: consistencyChecks from config.packages.elemental(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.elemental(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.elemental 0.000809 ============================================================================================= TESTING: consistencyChecks from config.packages.bamg(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.bamg(config/BuildSystem/config/packages/bamg.py:90) Defined make rule "bamg-build" with dependencies "" and code [] Defined make rule "bamg-install" with dependencies "" and code [] child config.packages.bamg 0.001246 ============================================================================================= TESTING: consistencyChecks from config.packages.ml(config/BuildSystem/config/packages/ml.py:62) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ml(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ml 0.000989 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_pardiso(config/BuildSystem/config/packages/mkl_pardiso.py:21) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mkl_pardiso(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mkl_pardiso 0.000927 ============================================================================================= TESTING: consistencyChecks from config.packages.SuperLU_DIST(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SuperLU_DIST(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.SuperLU_DIST 0.000824 ============================================================================================= TESTING: consistencyChecks from config.packages.SuperLU(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SuperLU(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.SuperLU 0.000782 Executing: uname -s stdout: Linux ============================================================================================= TESTING: consistencyChecks from config.packages.SuiteSparse(config/BuildSystem/config/packages/SuiteSparse.py:175) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SuiteSparse(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.SuiteSparse 0.019783 ============================================================================================= TESTING: consistencyChecks from config.packages.PaStiX(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PaStiX(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.PaStiX 0.000820 ============================================================================================= TESTING: consistencyChecks from config.packages.scalapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.scalapack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.scalapack 0.000793 ============================================================================================= TESTING: consistencyChecks from config.packages.strumpack(config/BuildSystem/config/packages/strumpack.py:67) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.strumpack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.strumpack 0.001065 Executing: uname -s stdout: Linux ============================================================================================= TESTING: consistencyChecks from config.packages.MUMPS(config/BuildSystem/config/packages/MUMPS.py:52) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MUMPS(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.MUMPS 0.018715 ============================================================================================= TESTING: consistencyChecks from config.packages.MOAB(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MOAB(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.MOAB 0.000916 ============================================================================================= TESTING: consistencyChecks from config.packages.Chombo(config/BuildSystem/config/packages/Chombo.py:131) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Chombo(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Chombo 0.001090 ============================================================================================= TESTING: consistencyChecks from config.packages.hypre(config/BuildSystem/config/packages/hypre.py:105) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hypre(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.hypre 0.001103 ============================================================================================= TESTING: consistencyChecks from config.packages.Trilinos(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Trilinos(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Trilinos 0.000798 ============================================================================================= TESTING: consistencyChecks from config.packages.xSDKTrilinos(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.xSDKTrilinos(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.xSDKTrilinos 0.000815 ============================================================================================= TESTING: consistencyChecks from config.packages.mstk(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mstk(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mstk 0.000798 ============================================================================================= TESTING: consistencyChecks from config.packages.MFEM(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MFEM(config/BuildSystem/config/packages/MFEM.py:224) Defined make rule "mfem-build" with dependencies "" and code [] Defined make rule "mfem-install" with dependencies "" and code [] child config.packages.MFEM 0.001240 ============================================================================================= TESTING: consistencyChecks from config.packages.AMReX(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.AMReX(config/BuildSystem/config/packages/AMReX.py:157) Defined make rule "amrex-build" with dependencies "" and code [] Defined make rule "amrex-install" with dependencies "" and code [] child config.packages.AMReX 0.001340 ============================================================================================= TESTING: configureRTLDDefault from PETSc.Configure(config/PETSc/Configure.py:709) ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/PETSc.Configure -I/tmp/petsc-QOJMfI/config.setCompilers -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c:4:15: error: 'RTLD_DEFAULT' undeclared here (not in a function); did you mean 'RTLD_LOCAL'? void *ptr = RTLD_DEFAULT; ^~~~~~~~~~~~ RTLD_LOCAL Source: #include "confdefs.h" #include "conffix.h" #include void *ptr = RTLD_DEFAULT; int main() { ; return 0; } ============================================================================================= TESTING: configurePrefetch from PETSc.Configure(config/PETSc/Configure.py:527) Sees if there are any prefetch functions supported Executing: uname -s stdout: Linux ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *v = 0;_mm_prefetch((const char*)v,_MM_HINT_NTA); ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_XMMINTRIN_H" to "1" Defined "Prefetch(a,b,c)" to "_mm_prefetch((const char*)(a),(c))" Defined "PREFETCH_HINT_NTA" to "_MM_HINT_NTA" Defined "PREFETCH_HINT_T0" to "_MM_HINT_T0" Defined "PREFETCH_HINT_T1" to "_MM_HINT_T1" Defined "PREFETCH_HINT_T2" to "_MM_HINT_T2" ============================================================================================= TESTING: configureUnused from PETSc.Configure(config/PETSc/Configure.py:595) Sees if __attribute((unused)) is supported ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" __attribute((unused)) static int myfunc(__attribute((unused)) void *name){ return 1;} int main() { int i = 0; int j = myfunc(&i); typedef void* atype; __attribute((unused)) atype a; ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "UNUSED" to "__attribute((unused))" ============================================================================================= TESTING: configureDeprecated from PETSc.Configure(config/PETSc/Configure.py:613) Check if __attribute((deprecated)) is supported ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" __attribute((deprecated)) static int myfunc(void) { return 1;} int main() { ; return 0; } Defined "DEPRECATED_FUNCTION(why)" to "__attribute((deprecated))" Defined "DEPRECATED_TYPEDEF(why)" to "__attribute((deprecated))" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" enum E {oldval __attribute((deprecated)), newval }; int main() { ; return 0; } Defined "DEPRECATED_ENUM(why)" to "__attribute((deprecated))" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define TEST _Pragma("GCC warning "Testing _Pragma"") value int main() { ; return 0; } Defined "DEPRECATED_MACRO(why)" to "_Pragma(why)" ============================================================================================= TESTING: configureIsatty from PETSc.Configure(config/PETSc/Configure.py:607) Check if the Unix C function isatty() works correctly Actually just assumes it does not work correctly on batch systems Defined "USE_ISATTY" to "1" ============================================================================================= TESTING: configureExpect from PETSc.Configure(config/PETSc/Configure.py:662) Sees if the __builtin_expect directive is supported ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__builtin_expect(0,1)) return 1;; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_BUILTIN_EXPECT" to "1" ============================================================================================= TESTING: configureAlign from PETSc.Configure(config/PETSc/Configure.py:646) Check if __attribute(aligned) is supported ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" struct mystruct {int myint;} __attribute((aligned(16))); char assert_aligned[(sizeof(struct mystruct)==16)*2-1]; int main() { ; return 0; } Defined "ATTRIBUTEALIGNED(size)" to "__attribute((aligned(size)))" Defined "HAVE_ATTRIBUTEALIGNED" to "1" ============================================================================================= TESTING: configureFunctionName from PETSc.Configure(config/PETSc/Configure.py:669) Sees if the compiler supports __func__ or a variant. ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "FUNCTION_NAME_C" to "__func__" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC /tmp/petsc-QOJMfI/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "FUNCTION_NAME_CXX" to "__func__" ============================================================================================= TESTING: configureIntptrt from PETSc.Configure(config/PETSc/Configure.py:687) Determine what to use for uintptr_t ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int x; uintptr_t i = (uintptr_t)&x;; return 0; } Defined "UINTPTR_T" to "uintptr_t" ============================================================================================= TESTING: configureSolaris from PETSc.Configure(config/PETSc/Configure.py:714) Solaris specific stuff ============================================================================================= TESTING: configureLinux from PETSc.Configure(config/PETSc/Configure.py:727) Linux specific stuff Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1" ============================================================================================= TESTING: configureWin32 from PETSc.Configure(config/PETSc/Configure.py:733) Win32 non-cygwin specific stuff Checking for functions [GetComputerName] in library ['Kernel32.lib'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory #include ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Checking for functions [GetComputerName] in library ['kernel32'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory #include ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Checking for functions [GetUserName] in library ['Advapi32.lib'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory #include ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Checking for functions [GetUserName] in library ['advapi32'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory #include ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Checking for functions [GetDC] in library ['User32.lib'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory #include ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Checking for functions [GetDC] in library ['user32'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory #include ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Checking for functions [CreateCompatibleDC] in library ['Gdi32.lib'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory #include ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Checking for functions [CreateCompatibleDC] in library ['gdi32'] [] ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.libraries/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory #include ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Checking for type: int32_t ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/config.types/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { uid_t u; ; return 0; } ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if defined(PETSC_HAVE_UNISTD_H) #include #endif int main() { int a=R_OK; ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int a=0; if (S_ISDIR(a)){} ; return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c:3:10: fatal error: windows.h: No such file or directory #include ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c:3:10: fatal error: windows.h: No such file or directory #include ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int flags = O_BINARY;; return 0; } Defined "REPLACE_DIR_SEPARATOR" to "'\\'" Defined "DIR_SEPARATOR" to "'/'" Defined "DIR" to ""/global/homes/m/madams/petsc"" Defined make macro "wPETSC_DIR" to "/global/homes/m/madams/petsc" Defined "ARCH" to ""arch-cori-gpu-opt-kokkos-gcc"" ============================================================================================= TESTING: configureCygwinBrokenPipe from PETSc.Configure(config/PETSc/Configure.py:811) Cygwin version <= 1.7.18 had issues with pipes and long commands invoked from gnu-make http://cygwin.com/ml/cygwin/2013-05/msg00340.html Executing: uname -s stdout: Linux ============================================================================================= TESTING: configureDefaultArch from PETSc.Configure(config/PETSc/Configure.py:827) ============================================================================================= TESTING: configureScript from PETSc.Configure(config/PETSc/Configure.py:844) Output a script in the conf directory which will reproduce the configuration ============================================================================================= TESTING: configureInstall from PETSc.Configure(config/PETSc/Configure.py:883) Setup the directories for installation Defined make rule "print_mesg_after_build" with dependencies "" and code ['-@echo "========================================="', '-@echo "Now to check if the libraries are working do:"', '-@echo "${MAKE_USER} PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} check"', '-@echo "========================================="'] ============================================================================================= TESTING: configureGCOV from PETSc.Configure(config/PETSc/Configure.py:899) ============================================================================================= TESTING: configureAtoll from PETSc.Configure(config/PETSc/Configure.py:590) Checks if atoll exists ===== Checking linker Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { long v = atoll("25"); return 0; } Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_ATOLL" to "1" ============================================================================================= Executing: CC -VV Defined "USE_SOCKET_VIEWER" to "1" ===== Checking compiler Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -c -o /tmp/petsc-QOJMfI/PETSc.Configure/conftest.o -I/tmp/petsc-QOJMfI/config.compilerFlags -I/tmp/petsc-QOJMfI/config.utilities.closure -I/tmp/petsc-QOJMfI/config.compilers -I/tmp/petsc-QOJMfI/config.compilersFortran -I/tmp/petsc-QOJMfI/config.headers -I/tmp/petsc-QOJMfI/config.utilities.cacheDetails -I/tmp/petsc-QOJMfI/config.functions -I/tmp/petsc-QOJMfI/config.utilities.featureTestMacros -I/tmp/petsc-QOJMfI/PETSc.options.sharedLibraries -I/tmp/petsc-QOJMfI/config.utilities.missing -I/tmp/petsc-QOJMfI/PETSc.options.scalarTypes -I/tmp/petsc-QOJMfI/config.packages.MPI -I/tmp/petsc-QOJMfI/config.packages.pthread -I/tmp/petsc-QOJMfI/config.setCompilers -I/tmp/petsc-QOJMfI/config.libraries -I/tmp/petsc-QOJMfI/config.types -I/tmp/petsc-QOJMfI/PETSc.Configure -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 /tmp/petsc-QOJMfI/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { setsockopt(0,SOL_SOCKET,SO_REUSEADDR,0,0); return 0; } Defined "HAVE_SO_REUSEADDR" to "1" ============================================================================================= Executing: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -show stdout: gcc -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -pthread -march=skylake-avx512 -Wl,-rpath -Wl,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,--enable-new-dtags -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi Defined "MPICC_SHOW" to ""gcc -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -pthread -march=skylake-avx512 -Wl,-rpath -Wl,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,--enable-new-dtags -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi"" Defined make macro "CC_FLAGS" to "-g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 " Defined "HAVE_CXX" to "1" Defined make macro "CXXPP_FLAGS" to " " Defined make macro "CXX_FLAGS" to "-g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC " Defined make macro "CXX_LINKER" to "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx" Defined make macro "CXX_LINKER_FLAGS" to " -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 " Defined make macro "CPP_FLAGS" to " " Defined make macro "PCC" to "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc" Defined make macro "PCC_FLAGS" to "-g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 " Defined make macro "PCPP_FLAGS" to " " Defined make macro "PFLAGS" to "${CFLAGS}" Defined make macro "PPPFLAGS" to "${CPPFLAGS}" Defined make macro "PY_CFLAGS" to "" Defined make macro "PY_CPPFLAGS" to "" Defined make macro "CC_SUFFIX" to "o" Defined make macro "PCC_LINKER" to "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc" Defined make macro "PCC_LINKER_FLAGS" to " -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2" Defined make macro "CC_LINKER_SUFFIX" to "" Defined "HAVE_FORTRAN" to "1" Defined make macro "FPP_FLAGS" to "" Defined make macro "FC_FLAGS" to "-g -fPIC -O2 " Defined make macro "FC_SUFFIX" to "o" Defined make macro "FC_LINKER" to "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90" Defined make macro "FC_LINKER_FLAGS" to " -g -fPIC -O2 " Defined make macro "FC_MODULE_FLAG" to "-I" Defined make macro "FC_MODULE_OUTPUT_FLAG" to "-J" Defined make macro "CUDAC_FLAGS" to "-Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -O3 -gencode arch=compute_80,code=sm_80 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -Wno-deprecated-gpu-targets " Defined make macro "SL_LINKER" to "/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc" Defined make macro "SL_LINKER_FLAGS" to "${PCC_LINKER_FLAGS}" Defined make macro "SL_LINKER_SUFFIX" to "so" Defined "SLSUFFIX" to ""so"" Defined make macro "SL_LINKER_LIBS" to "${PETSC_EXTERNAL_LIB_BASIC}" Defined make macro "PETSC_LANGUAGE" to "CONLY" Defined make macro "PETSC_SCALAR" to "real" Defined make macro "PETSC_PRECISION" to "double" ============================================================================================= Defined "HAVE_KOKKOS_KERNELS" to "1" Defined make macro "KOKKOS_KERNELS_LIB" to "-Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lkokkoskernels" Defined make macro "KOKKOS_KERNELS_INCLUDE" to "" Defined "HAVE_KOKKOS" to "1" Defined make macro "KOKKOS_LIB" to "-Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lkokkoscontainers -lkokkoscore" Defined make macro "KOKKOS_INCLUDE" to "" Defined "HAVE_P4EST" to "1" Defined make macro "P4EST_LIB" to "-Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lp4est -lsc" Defined make macro "P4EST_INCLUDE" to "-I/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include" Defined make macro "BLASLAPACK_LIB" to "-Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lflapack -lfblas" Defined make macro "BLASLAPACK_INCLUDE" to "" Defined "HAVE_PTHREAD" to "1" Defined make macro "PTHREAD_LIB" to "" Defined make macro "PTHREAD_INCLUDE" to "" Defined "HAVE_FBLASLAPACK" to "1" Defined make macro "FBLASLAPACK_LIB" to "" Defined make macro "FBLASLAPACK_INCLUDE" to "" Defined "HAVE_MATHLIB" to "1" Defined make macro "MATHLIB_LIB" to "-lm" Defined make macro "MATHLIB_INCLUDE" to "" Defined "HAVE_ZLIB" to "1" Defined make macro "ZLIB_LIB" to "-lz" Defined make macro "ZLIB_INCLUDE" to "" Defined "HAVE_REGEX" to "1" Defined make macro "REGEX_LIB" to "" Defined make macro "REGEX_INCLUDE" to "" Defined "HAVE_SOWING" to "1" Defined make macro "SOWING_LIB" to "" Defined make macro "SOWING_INCLUDE" to "" Defined make macro "MPI_LIB" to "" Defined make macro "MPI_INCLUDE" to "-I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include" Defined "HAVE_CUDA" to "1" Defined make macro "CUDA_LIB" to "-Wl,-rpath,/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -L/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -lcufft -lcublas -lcudart -lcusparse -lcusolver -lcurand" Defined make macro "CUDA_INCLUDE" to "-I/usr/common/software/sles15_cgpu/cuda/11.1.1/include" Defined "HAVE_X" to "1" Defined make macro "X_LIB" to "-lX11" Defined make macro "X_INCLUDE" to "" Defined make macro "PETSC_EXTERNAL_LIB_BASIC" to "-Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -L/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -lkokkoskernels -lkokkoscontainers -lkokkoscore -lp4est -lsc -lflapack -lfblas -lm -lz -lcufft -lcublas -lcudart -lcusparse -lcusolver -lcurand -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl" Defined make macro "PETSC_CC_INCLUDES" to "-I/global/homes/m/madams/petsc/include -I/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include" Defined make macro "PETSC_CC_INCLUDES_INSTALL" to "-I/global/homes/m/madams/petsc/include -I/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include" Defined make macro "PETSC_FC_INCLUDES" to "-I/global/homes/m/madams/petsc/include -I/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include" Defined make macro "PETSC_FC_INCLUDES_INSTALL" to "-I/global/homes/m/madams/petsc/include -I/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include" Defined "LIB_DIR" to ""/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib"" Defined make macro "LIBNAME" to "${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}" Defined make macro "SHLIBS" to "libpetsc" Defined make macro "PETSC_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_KSP_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TS_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TAO_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_WITH_EXTERNAL_LIB" to "-L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -L/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore -lp4est -lsc -lflapack -lfblas -lm -lz -lcufft -lcublas -lcudart -lcusparse -lcusolver -lcurand -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl" Defined "USE_SINGLE_LIBRARY" to "1" Defined make macro "PETSC_SYS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_VEC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_MAT_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_DM_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_KSP_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_SNES_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TAO_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CHARACTERISTIC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CONTRIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "CONFIGURE_OPTIONS" to "--with-mpi-dir=/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc --with-cuda-dir=/usr/common/software/sles15_cgpu/cuda/11.1.1 CFLAGS=\" -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4\" CXXFLAGS=\" -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4\" FFLAGS=\" -g \" COPTFLAGS=\" -O2\" CXXOPTFLAGS=\" -O2\" FOPTFLAGS=\" -O2\" --CUDAFLAGS=\"-Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4\" --CUDAOPTFLAGS=-O3 --CUDALIBS=-lnvToolsExt --download-fblaslapack=1 --with-debugging=0 --download-kokkos --download-kokkos-kernels --with-kokkos-kernels-tpl=0 --download-kokkos-cmake-arguments=-DKokkos_ENABLE_AGGRESSIVE_VECTORIZATION=ON --with-make-np=8 --with-ctable=0 --with-mpiexec=\"srun -G 1 -c 10\" --with-batch=0 PETSC_ARCH=arch-cori-gpu-opt-kokkos-gcc --with-cuda=1 --download-p4est=1 --with-zlib=1 --with-fortran-interface=0" ================================================================================ child PETSc.Configure 3.129860 child sum 110.995337 child total 111.020849 **** arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/petscvariables **** C_VERSION = gcc (GCC) 8.3.0 CUDA_DEPFLAGS = -MMD -MP AR_ARGFILE = yes FC_DEFINE_FLAG = -D C_DEPFLAGS = -MMD -MP FC_VERSION = GNU Fortran (GCC) 8.3.0 CUDA_VERSION = nvcc: NVIDIA (R) Cuda compiler driver AR_FLAGS = cr CXX_DEPFLAGS = -MMD -MP FC_DEPFLAGS = -MMD -MP Cxx_VERSION = g++ (GCC) 8.3.0 FAST_AR_FLAGS = Scq FC_MODULE_OUTPUT_FLAG = -J PETSC_LANGUAGE = CONLY FC_LINKER_FLAGS = -g -fPIC -O2 SL_LINKER_SUFFIX = so SL_LINKER = /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc CC_FLAGS = -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 SOWING_LIB = PETSC_PRECISION = double PETSC_LIB_BASIC = -lpetsc X_LIB = -lX11 PETSC_DM_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} KOKKOS_LIB = -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lkokkoscontainers -lkokkoscore FC_FLAGS = -g -fPIC -O2 BLASLAPACK_LIB = -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lflapack -lfblas PETSC_MAT_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC = /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC} SHLIBS = libpetsc MATHLIB_INCLUDE = MPI_LIB = PETSC_SNES_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} REGEX_INCLUDE = KOKKOS_KERNELS_INCLUDE = PETSC_TS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PY_CFLAGS = SL_LINKER_FLAGS = ${PCC_LINKER_FLAGS} PFLAGS = ${CFLAGS} PETSC_KSP_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} MATHLIB_LIB = -lm CC_SUFFIX = o PETSC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_FC_INCLUDES_INSTALL = -I/global/homes/m/madams/petsc/include -I/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include PETSC_CHARACTERISTIC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CONFIGURE_OPTIONS = --with-mpi-dir=/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc --with-cuda-dir=/usr/common/software/sles15_cgpu/cuda/11.1.1 CFLAGS=\" -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4\" CXXFLAGS=\" -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4\" FFLAGS=\" -g \" COPTFLAGS=\" -O2\" CXXOPTFLAGS=\" -O2\" FOPTFLAGS=\" -O2\" --CUDAFLAGS=\"-Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4\" --CUDAOPTFLAGS=-O3 --CUDALIBS=-lnvToolsExt --download-fblaslapack=1 --with-debugging=0 --download-kokkos --download-kokkos-kernels --with-kokkos-kernels-tpl=0 --download-kokkos-cmake-arguments=-DKokkos_ENABLE_AGGRESSIVE_VECTORIZATION=ON --with-make-np=8 --with-ctable=0 --with-mpiexec=\"srun -G 1 -c 10\" --with-batch=0 PETSC_ARCH=arch-cori-gpu-opt-kokkos-gcc --with-cuda=1 --download-p4est=1 --with-zlib=1 --with-fortran-interface=0 LIBNAME = ${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX} CXXPP_FLAGS = KOKKOS_INCLUDE = PETSC_SCALAR = real PETSC_FC_INCLUDES = -I/global/homes/m/madams/petsc/include -I/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include CPP_FLAGS = KOKKOS_KERNELS_LIB = -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lkokkoskernels PETSC_TAO_LIB_BASIC = -lpetsc PETSC_KSP_LIB_BASIC = -lpetsc FPP_FLAGS = PETSC_CC_INCLUDES_INSTALL = -I/global/homes/m/madams/petsc/include -I/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include FC_LINKER = /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 PPPFLAGS = ${CPPFLAGS} PTHREAD_LIB = PETSC_EXTERNAL_LIB_BASIC = -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -L/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -lkokkoskernels -lkokkoscontainers -lkokkoscore -lp4est -lsc -lflapack -lfblas -lm -lz -lcufft -lcublas -lcudart -lcusparse -lcusolver -lcurand -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl CXX_FLAGS = -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC PY_CPPFLAGS = PCC_LINKER_FLAGS = -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 PETSC_CONTRIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CXX_LINKER_FLAGS = -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 PCC_LINKER = /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc PETSC_SYS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC_FLAGS = -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 PETSC_WITH_EXTERNAL_LIB = -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -L/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -Wl,-rpath,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib/gcc -Wl,-rpath,/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -L/usr/common/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib64 -Wl,-rpath,/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -L/global/common/cori_cle7/software/sles15_cgpu/gcc/8.3.0/lib -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore -lp4est -lsc -lflapack -lfblas -lm -lz -lcufft -lcublas -lcudart -lcusparse -lcusolver -lcurand -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl CUDA_LIB = -Wl,-rpath,/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -L/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -lcufft -lcublas -lcudart -lcusparse -lcusolver -lcurand PTHREAD_INCLUDE = PETSC_CC_INCLUDES = -I/global/homes/m/madams/petsc/include -I/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include P4EST_INCLUDE = -I/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include CXX_LINKER = /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx FBLASLAPACK_INCLUDE = BLASLAPACK_INCLUDE = CUDA_INCLUDE = -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include PETSC_TS_LIB_BASIC = -lpetsc PETSC_VEC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CC_LINKER_SUFFIX = FBLASLAPACK_LIB = CUDAC_FLAGS = -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -O3 -gencode arch=compute_80,code=sm_80 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -Wno-deprecated-gpu-targets PCPP_FLAGS = FC_MODULE_FLAG = -I P4EST_LIB = -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lp4est -lsc wPETSC_DIR = /global/homes/m/madams/petsc X_INCLUDE = ZLIB_INCLUDE = SOWING_INCLUDE = PETSC_TAO_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} MPI_INCLUDE = -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include REGEX_LIB = FC_SUFFIX = o ZLIB_LIB = -lz SHELL = /bin/bash GREP = /usr/bin/grep MV = /usr/bin/mv PYTHON = /usr/bin/python MKDIR = /usr/bin/mkdir -p SEDINPLACE = /usr/bin/sed -i M4 = /usr/bin/m4 SED = /usr/bin/sed DIFF = /usr/bin/diff -w RM = /usr/bin/rm -f CP = /usr/bin/cp CC_LINKER_SLFLAG = -Wl,-rpath, CXXPP = /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -E CC = /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc RANLIB = /usr/bin/ranlib DYNAMICLINKER = /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc CXX = /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx FC = /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 CUDAC = /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc FC_LINKER_SLFLAG = -Wl,-rpath, CPP = /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -E AR_LIB_SUFFIX = a LD_SHARED = /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc AR = /usr/bin/ar CUDAPP = /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc -E CLANGUAGE = C GIT = git PREFIXDIR = /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc PETSC_SCALAR_SIZE = 64 PETSC_INDEX_SIZE = 32 OMAKE_PRINTDIR = /usr/bin/gmake --print-directory MAKE_NP = 8 NPMAX = 80 MAKE = /usr/bin/gmake MAKE_PAR_OUT_FLG = --output-sync=recurse OMAKE = /usr/bin/gmake --no-print-directory MAKE_LOAD = 113.6 MAKE_TEST_NP = 32 MAKE_USER = make SL_LINKER_FUNCTION = -shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2)) SONAME_FUNCTION = $(1).so.$(2) BUILDSHAREDLIB = yes GDB = /usr/bin/gdb DSYMUTIL = true MPIEXEC = srun -G 1 -c 10 HOSTNAME = hostname PING = ping MPIEXECEXECUTABLE = /opt/esslurm/bin/srun -G 1 -c 10 DEVICEQUERY = /usr/common/software/sles15_cgpu/cuda/11.1.1/extras/demo_suite/deviceQuery SYSTEMNVCC = /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc CMAKE = /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/cmake CTEST = /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/ctest KOKKOS_USE_CUDA_COMPILER = 1 KOKKOS_BIN = /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin DOCTEXT = /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/doctext BIB2HTML = /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/bib2html PDFLATEX = /usr/bin/pdflatex BFORT = /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/bfort MAPNAMES = /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/mapnames **** arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/petscrules **** print_mesg_after_build: -@echo "=========================================" -@echo "Now to check if the libraries are working do:" -@echo "${MAKE_USER} PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} check" -@echo "=========================================" libc: ${LIBNAME}(${OBJSC}) libcxx: ${LIBNAME}(${OBJSCXX}) libcu: ${LIBNAME}(${OBJSCU}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} shared_arch: shared_linux amrex-build: amrex-install: mfem-build: mfem-install: slepc-build: slepc-install: bamg-build: bamg-install: hpddm-build: hpddm-install: libmesh-build: libmesh-install: mpi4py-build: mpi4py-install: petsc4py-build: petsc4py-install: petsc4pytest: **** arch-cori-gpu-opt-kokkos-gcc/include/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_ARCH "arch-cori-gpu-opt-kokkos-gcc" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_Alignx(a,b) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated)) #define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated)) #define PETSC_DEPRECATED_MACRO(why) _Pragma(why) #define PETSC_DEPRECATED_TYPEDEF(why) __attribute((deprecated)) #define PETSC_DIR "/global/homes/m/madams/petsc" #define PETSC_DIR_SEPARATOR '/' #define PETSC_FORTRAN_CHARLEN_T size_t #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CUDA 1 #define PETSC_HAVE_CUDA_DIALECT_CXX11 1 #define PETSC_HAVE_CUDA_DIALECT_CXX14 1 #define PETSC_HAVE_CUDA_VERSION_11PLUS 1 #define PETSC_HAVE_CUSOLVERDNDPOTRI 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_DLADDR 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FBLASLAPACK 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN 1 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_KOKKOS 1 #define PETSC_HAVE_KOKKOS_KERNELS 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1 #define PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_GPU_AWARE 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_OMPI_MAJOR_VERSION 4 #define PETSC_HAVE_OMPI_MINOR_VERSION 0 #define PETSC_HAVE_OMPI_RELEASE_VERSION 3 #define PETSC_HAVE_P4EST 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_REAL___FLOAT128 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SCHED_CPU_SET_T 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SOWING 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_X 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LIB_DIR "/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib" #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 16 #define PETSC_MPICC_SHOW "gcc -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -pthread -march=skylake-avx512 -Wl,-rpath -Wl,/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -Wl,--enable-new-dtags -L/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/lib -lmpi" #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PYTHON_EXE "/usr/bin/python" #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_SLSUFFIX "so" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_INFO 1 #define PETSC_USE_ISATTY 1 #define PETSC_USE_LOG 1 #define PETSC_USE_MALLOC_COALESCED 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_USING_F2003 1 #define PETSC_VERSION_BRANCH_GIT "adams/cusparse-cpu-solve" #define PETSC_VERSION_DATE_GIT "2021-05-15 12:22:00 -0700" #define PETSC_VERSION_GIT "v3.15.0-501-ge792467277" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #endif **** arch-cori-gpu-opt-kokkos-gcc/include/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif **** arch-cori-gpu-opt-kokkos-gcc/include/petscpkg_version.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_PKG_MPI_VERSION_MAJOR 3 #define PETSC_PKG_MPI_VERSION_MINOR 0 #define PETSC_PKG_MPI_VERSION_SUBMINOR 0 #define PETSC_PKG_MPI_VERSION_ PETSC_PKG_MPI_VERSION_EQ #define PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_MPI_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_MPI_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MPI_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_MPI_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_MPI_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_MPI_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_CUDA_VERSION_MAJOR 11 #define PETSC_PKG_CUDA_VERSION_MINOR 1 #define PETSC_PKG_CUDA_VERSION_SUBMINOR 0 #define PETSC_PKG_CUDA_VERSION_ PETSC_PKG_CUDA_VERSION_EQ #define PETSC_PKG_CUDA_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_CUDA_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_CUDA_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_CUDA_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_CUDA_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_CUDA_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_CUDA_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_CUDA_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_CUDA_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_CUDA_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_CUDA_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_CUDA_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_CUDA_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_CUDA_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_CUDA_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_CUDA_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_CUDA_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_ZLIB_VERSION_MAJOR 1 #define PETSC_PKG_ZLIB_VERSION_MINOR 2 #define PETSC_PKG_ZLIB_VERSION_SUBMINOR 11 #define PETSC_PKG_ZLIB_VERSION_ PETSC_PKG_ZLIB_VERSION_EQ #define PETSC_PKG_ZLIB_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_ZLIB_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_ZLIB_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_ZLIB_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_ZLIB_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_ZLIB_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_ZLIB_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_ZLIB_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_ZLIB_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_ZLIB_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_ZLIB_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_ZLIB_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_ZLIB_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_ZLIB_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_ZLIB_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_ZLIB_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_ZLIB_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #endif Attempting to save configure hash file: arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/configure-hash Saved configure hash file: arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/configure-hash Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- PETSc: File creation : Generated Fortran stubs Build : Set default architecture to arch-cori-gpu-opt-kokkos-gcc in lib/petsc/conf/petscvariables File creation : Created arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/reconfigure-arch-cori-gpu-opt-kokkos-gcc.py for automatic reconfiguration KOKKOS: Install : Installed KOKKOS into /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc Framework: RDict update : Substitutions were stored in RDict with parent None File creation : Created makefile configure header arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/petscvariables File creation : Created makefile configure header arch-cori-gpu-opt-kokkos-gcc/lib/petsc/conf/petscrules File creation : Created configure header arch-cori-gpu-opt-kokkos-gcc/include/petscconf.h File creation : Created C specific configure header arch-cori-gpu-opt-kokkos-gcc/include/petscfix.h File creation : Created configure pkg header arch-cori-gpu-opt-kokkos-gcc/include/petscpkg_version.h Compilers: C Compiler: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 Version: gcc (GCC) 8.3.0 CUDA Compiler: /usr/common/software/sles15_cgpu/cuda/11.1.1/bin/nvcc -Xcompiler -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -O3 -gencode arch=compute_80,code=sm_80 -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include -Wno-deprecated-gpu-targets Version: nvcc: NVIDIA (R) Cuda compiler driver C++ Compiler: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicxx -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -O2 -fPIC Version: g++ (GCC) 8.3.0 Fortran Compiler: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpif90 -g -fPIC -O2 Version: GNU Fortran (GCC) 8.3.0 Linkers: Shared linker: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 Dynamic linker: /usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/bin/mpicc -shared -g -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DPETSC_HAVE_CUDA_ATOMIC -DLANDAU_MAX_Q=4 -fPIC -O2 Libraries linked against: -lquadmath -lstdc++ -ldl BlasLapack: Library: -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lflapack -lfblas uses 4 byte integers MPI: Version: 3 Includes: -I/usr/common/software/sles15_cgpu/openmpi/4.0.3/gcc/include Mpiexec: srun -G 1 -c 10 OMPI_VERSION: 4.0.3 cuda: Version: 11.1 Includes: -I/usr/common/software/sles15_cgpu/cuda/11.1.1/include Library: -Wl,-rpath,/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -L/usr/common/software/sles15_cgpu/cuda/11.1.1/lib64 -lcufft -lcublas -lcudart -lcusparse -lcusolver -lcurand CUDA SM 80 CUDA underlying compiler: CUDA_CXX gcc CUDA underlying compiler flags: CUDA_CXXFLAGS X: Library: -lX11 pthread: fblaslapack: zlib: Version: 1.2.11 Library: -lz cmake: Version: 3.18.2 /global/common/sw/cray/cnl7/haswell/cmake/3.18.2/bin/cmake regex: kokkos-kernels: Library: -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lkokkoskernels Backend: CUDA kokkos: Library: -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lkokkoscontainers -lkokkoscore Backend: CUDA p4est: Includes: -I/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/include Library: -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -L/global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/lib -lp4est -lsc sowing: Version: 1.1.26 /global/homes/m/madams/petsc/arch-cori-gpu-opt-kokkos-gcc/bin/bfort Language used to compile PETSc: C PETSc: PETSC_ARCH: arch-cori-gpu-opt-kokkos-gcc PETSC_DIR: /global/homes/m/madams/petsc Prefix: Scalar type: real Precision: double Support for __float128 Integer size: 4 bytes Single library: yes Shared libraries: yes Memory alignment from malloc(): 16 bytes Using GNU make: /usr/bin/gmake xxx=========================================================================xxx Configure stage complete. Now build PETSc libraries with: make PETSC_DIR=/global/homes/m/madams/petsc PETSC_ARCH=arch-cori-gpu-opt-kokkos-gcc all xxx=========================================================================xxx ================================================================================ Finishing configure run at Sun, 16 May 2021 03:56:28 -0700 ================================================================================