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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Hi Barry,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Thank you for looking into this. The code I'm referring to is part of a larger fortran module, and I have tried to isolate the problem in a reproducible test
case. Unfortunately, I have not been able to reproduce the problem there. It is probably a subtle bug or misuse on our part, but for now I can't seem to pinpoint the problem.
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Menno<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"><o:p> </o:p></span></p>
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<font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;">dr. ir.</font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;">
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</font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;">Deij-van Rijswijk</font><font size="3" face="Segoe UI"></font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;"> |
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> Barry Smith <bsmith@petsc.dev>
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<b>Sent:</b> Friday, April 23, 2021 1:18 AM<br>
<b>To:</b> Deij-van Rijswijk, Menno <M.Deij@marin.nl><br>
<b>Cc:</b> petsc-users@mcs.anl.gov<br>
<b>Subject:</b> Re: [petsc-users] MatDestroy problem with multiple matrices and SUPERLU_DIST<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"> Please send a code that reproduces the problem. I cannot reproduce it. It is absolutely expected to work, but there may be an untested corner case you have hit on.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"> The comment <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">/* This allows reusing the Superlu_DIST communicator and grid when only a single SuperLU_DIST matrix is used at a time */<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">means that __IF__ only a single SuperLU_DIST matrix is used at a time then the Superlu_DIST communicator and grid ARE reused for a next one created after the first has been destroyed. If multiple SuperLU_DIST matrix are needed at the same
time then they each get there own Superlu_DIST communicator and grid and there is no reuse. But this does not mean you cannot have as many matrices and solvers outstanding at the same time as you want.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"> Barry<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Yes there could be a subtle bug in our logic but we need a test case to find it.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<o:p></o:p></p>
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<p class="MsoNormal">On Apr 21, 2021, at 8:06 AM, Deij-van Rijswijk, Menno <<a href="mailto:M.Deij@marin.nl">M.Deij@marin.nl</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="font-size:13.5pt;font-family:"Helvetica",sans-serif"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">Good afternoon,</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> </span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">In our code we're using two matrices that are preconditioned using SUPERLU_dist. Upon freeing the second matrix with MatDestroy, the program segfaults with the
following stacktrace (see below). This happens with PETSc versions 3.14.5 and 3.15.0, whereas version 3.11.2 does not have this problem. In the code src\mat\impls\aij\mpi\superlu_dist\superlu_dist.c I see that Petsc_Superlu_dist_keyval_Delete_Fn has been added
between 3.11.2 and 3.14.5, and the comment reads that it allows reusing the communicator when only a single matrix is used at the time. I'm wondering if using multiple matrices with SUPERLU_dist is problematic here?</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> </span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">Note: this is happening on single process and on multiple MPI processes.</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> </span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">Best regards,</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> </span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> </span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">Menno Deij - van Rijswijk</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> </span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> </span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> </span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas">#0 0x000015554ffc7db4 in ompi_comm_free () from /home/mdeij/install-gnu/extLibs/lib/libmpi.so.40</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas">#1 0x0000155550021536 in PMPI_Comm_free () from /home/mdeij/install-gnu/extLibs/lib/libmpi.so.40</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas">#2 0x00001555534262ba in superlu_gridexit (grid=0x3689da0)</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas"> at /home/mdeij/install-gnu/extLibs/Linux-x86_64-Intel/superlu_dist-6.3.0/SRC/superlu_grid.c:174</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas">#3 0x0000155553df094b in Petsc_Superlu_dist_keyval_Delete_Fn (comm=0x26a4e50, keyval=16, attr_val=0x3689d90,</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas"> extra_state=0x0)</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas"> at /home/mdeij/build-libs-gnu/superbuild/petsc/src/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c:97</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas">#4 0x000015554ffc145c in ompi_attr_delete_impl () from /home/mdeij/install-gnu/extLibs/lib/libmpi.so.40</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas">#5 0x000015554ffc3fdf in ompi_attr_delete_all () from /home/mdeij/install-gnu/extLibs/lib/libmpi.so.40</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas">#6 0x000015554ffc7ca7 in ompi_comm_free () from /home/mdeij/install-gnu/extLibs/lib/libmpi.so.40</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas">#7 0x0000155550021536 in PMPI_Comm_free () from /home/mdeij/install-gnu/extLibs/lib/libmpi.so.40</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas">#8 0x00001555538f31c5 in PetscCommDestroy (comm=0x29712e0)</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas"> at /home/mdeij/build-libs-gnu/superbuild/petsc/src/src/sys/objects/tagm.c:217</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas">#9 0x00001555538f55ab in PetscHeaderDestroy_Private (h=0x29712a0)</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas"> at /home/mdeij/build-libs-gnu/superbuild/petsc/src/src/sys/objects/inherit.c:121</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas">#10 0x0000155553b44626 in MatDestroy (A=0x26e1c98)</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas"> at /home/mdeij/build-libs-gnu/superbuild/petsc/src/src/mat/interface/matrix.c:1310</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas">#11 0x0000155553b87a86 in matdestroy_ (x=0x26e1c98, ierr=0x7fffffffc9cc)</span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:Consolas"> </span><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
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</span><b><span style="font-size:8.0pt;font-family:"Verdana",sans-serif;color:#7D7D7D">dr. ir.<span class="apple-converted-space"> </span>Menno A.<span class="apple-converted-space"> </span>Deij-van Rijswijk<span class="apple-converted-space"> </span>|<span class="apple-converted-space"> </span>Researcher<span class="apple-converted-space"> </span>|<span class="apple-converted-space"> </span>Research
& Development</span></b><span style="font-size:13.5pt;font-family:"Helvetica",sans-serif"><br>
</span><b><span style="font-size:9.0pt;font-family:"Verdana",sans-serif;color:#7D7D7D">MARIN</span></b><span class="apple-converted-space"><span style="font-size:8.0pt;font-family:"Verdana",sans-serif;color:#7D7D7D"> </span></span><span style="font-size:8.0pt;font-family:"Verdana",sans-serif;color:#7D7D7D">|
T<span class="apple-converted-space"> </span>+31 317 49 35 06</span><span class="apple-converted-space"><span style="font-size:8.0pt;font-family:"Verdana",sans-serif"> </span></span><span style="font-size:8.0pt;font-family:"Verdana",sans-serif">|<span class="apple-converted-space"> </span><a href="mailto:M.Deij@marin.nl"><span style="color:#954F72">M.Deij@marin.nl</span></a> |<span class="apple-converted-space"> </span><a href="http://www.marin.nl/"><span style="color:#954F72">www.marin.nl</span></a></span><span style="font-size:13.5pt;font-family:"Helvetica",sans-serif"><br>
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</span><span style="font-size:8.0pt;font-family:"Verdana",sans-serif;color:#7D7D7D">MARIN news:<span class="apple-converted-space"> </span><a href="https://www.marin.nl/news/iwsa-open-letter-release-for-shipping-decarbonisation"><span style="color:#954F72">IWSA
Open letter release for shipping decarbonisation</span></a></span><o:p></o:p></p>
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