================================================================================ ================================================================================ Starting configure run at Sat, 10 Apr 2021 15:13:06 -0700 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --download-mumps --download-scalapack --download-parmetis --download-metis --download-fblaslapack --download-hypre --download-superlu --download-hdf5=yes --with-debugging=0 COPTFLAGS="-O3 -march=native -mtune=native" CXXOPTFLAGS="-O3 -march=native -mtune=native" FOPTFLAGS="-O3 -march=native -mtune=nativels" Working directory: /global/home/danyangs/soft/petsc/petsc-3.13.6 Machine platform: ('Linux', 'seawolf1', '2.6.32-358.18.1.el6.x86_64', '#1 SMP Wed Aug 28 17:19:38 UTC 2013', 'x86_64', 'x86_64') Python version: 2.6.6 (r266:84292, Jul 10 2013, 22:48:45) [GCC 4.4.7 20120313 (Red Hat 4.4.7-3)] ================================================================================ ================================================================================ TEST configureExternalPackagesDir from config.framework(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/framework.py:934) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:934) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/utilities/debuggers.py:21) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking for program /global/software/cmake-3.2.3/bin/gdb...not found Checking for program /global/system/globus-5.2.5/bin/gdb...not found Checking for program /global/system/globus-5.2.5/sbin/gdb...not found Checking for program /global/software/openmpi-1.6.5/intel/bin/gdb...not found Checking for program /global/software/java/jre1.6.0_14/bin/gdb...not found Checking for program /global/software/intel/composerxe/bin/gdb...not found Checking for program /usr/lib64/qt-3.3/bin/gdb...not found Checking for program /bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux child config.utilities.debuggers 0.020367 ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 13 #define PETSC_VERSION_SUBMINOR 6 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "Sep 29, 2020" #define PETSC_VERSION_GIT "v3.13.6" #define PETSC_VERSION_DATE_GIT "2020-09-29 08:38:40 -0500" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.017129 ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.001914 ================================================================================ TEST configureGit from config.sourceControl(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /global/software/cmake-3.2.3/bin/git...not found Checking for program /global/system/globus-5.2.5/bin/git...not found Checking for program /global/system/globus-5.2.5/sbin/git...not found Checking for program /global/software/openmpi-1.6.5/intel/bin/git...not found Checking for program /global/software/java/jre1.6.0_14/bin/git...not found Checking for program /global/software/intel/composerxe/bin/git...not found Checking for program /usr/lib64/qt-3.3/bin/git...not found Checking for program /bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Running Executable WITHOUT threads to time it out Executing: git --version stdout: git version 1.7.1 child config.sourceControl 0.009206 ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) This is a tarball installation child PETSc.options.petscclone 0.003441 ================================================================================ TEST setNativeArchitecture from PETSc.options.arch(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/PETSc/options/arch.py:31) TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ================================================================================ TEST configureArchitecture from PETSc.options.arch(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/PETSc/options/arch.py:43) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set No previous hashfile found Setting hashfile: linux-intel-openmpi/lib/petsc/conf/configure-hash Deleting configure hash file: linux-intel-openmpi/lib/petsc/conf/configure-hash Unable to delete configure hash file: linux-intel-openmpi/lib/petsc/conf/configure-hash child PETSc.options.arch 0.238338 ================================================================================ TEST setInstallDir from PETSc.options.installDir(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/home/danyangs/soft/petsc/petsc-3.13.6/linux-intel-openmpi" ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/PETSc/options/installDir.py:80) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:80) ================================================================================ TEST cleanConfDir from PETSc.options.installDir(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/PETSc/options/installDir.py:73) TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:73) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/PETSc/options/installDir.py:57) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:57) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /home/danyangs/soft/petsc/petsc-3.13.6/linux-intel-openmpi/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/PETSc/options/installDir.py:93) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:93) child PETSc.options.installDir 0.010184 ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.001158 ================================================================================ TEST configureCLanguage from PETSc.options.languages(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.004338 ================================================================================ TEST printEnvVariables from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1726) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1726) **** printenv **** SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass MPIEXEC=/global/software/openmpi-1.6.5/intel/bin/mpiexec MODULE_VERSION=3.2.8 KDE_IS_PRELINKED=1 INTEL_LICENSE_FILE=/global/software/intel/licenses LESSOPEN=|/usr/bin/lesspipe.sh %s LIBPATH=/global/system/globus-5.2.5/lib64:/usr/lib:/lib SSH_CLIENT=216.232.220.213 62648 22 CPATH=/global/software/intel/composerxe/mkl/include LOGNAME=danyangs USER=danyangs GLOBUS_LOCATION=/global/system/globus-5.2.5 QTDIR=/usr/lib64/qt-3.3 LD_LIBRARY_PATH=/global/system/globus-5.2.5/lib64:/global/software/intel/composerxe/mkl/lib/intel64:/global/software/intel/composerxe/lib/intel64 LOADEDMODULES=intel/14.0.2:cmake/3.2.3 LANG=en_US.UTF-8 QTLIB=/usr/lib64/qt-3.3/lib TERM=xterm-256color SHELL=/bin/bash CVS_RSH=ssh LIBRARY_PATH=/global/software/intel/composerxe/mkl/lib/intel64 INCLUDE=/global/software/intel/composerxe/mkl/include QTINC=/usr/lib64/qt-3.3/include F77=/global/software/intel/composerxe/bin/ifort G_BROKEN_FILENAMES=1 PWD=/home/danyangs/soft/petsc/petsc-3.13.6 HISTSIZE=1000 F90=/global/software/intel/composerxe/bin/ifort OMPI_F77=/global/software/intel/composerxe/bin/ifort MANPATH=/global/system/globus-5.2.5/share/man:/global/software/openmpi-1.6.5/share/man:/global/software/intel/composerxe/man:/usr/share/man/overrides:/usr/share/man/en:/usr/share/man:/global/system/moab/man:/global/system/torque/man:/global/software/man:/usr/local/share/man:/global/software/cmake-3.2.3/man LIS_ARCH=lis-openmp MODULESROOT=/global/system/Modules PETSC_DIR=/home/danyangs/soft/petsc/petsc-3.13.6 JAVA_HOME=/global/software/java/jre1.6.0_14 HOME=/home/danyangs MODULESHOME=/global/system/Modules/3.2.8 MODULEPATH=/global/system/Modules/versions:/global/system/Modules/$MODULE_VERSION/modulefiles:/global/system/Modules/modulefiles USERNAME= MODULE_VERSION_STACK=3.2.8 MYPROXY_SERVER=myproxy.westgrid.ca SHLIB_PATH=/global/system/globus-5.2.5/lib64 KDEDIRS=/usr CC=/global/software/intel/composerxe/bin/icc DYLD_LIBRARY_PATH=/global/system/globus-5.2.5/lib64 MPIRUN=/global/software/openmpi-1.6.5/intel/bin/mpiexec FPATH=/global/software/intel/composerxe/mkl/include PATH=/global/software/cmake-3.2.3/bin:/global/system/globus-5.2.5/bin:/global/system/globus-5.2.5/sbin:/global/software/openmpi-1.6.5/intel/bin:/global/software/java/jre1.6.0_14/bin:/global/software/intel/composerxe/bin:/usr/lib64/qt-3.3/bin:/bin:/usr/bin:/global/system/moab/bin:/global/system/torque/bin:/global/software/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/ibutils/bin:. KMP_STACKSIZE=128m GLOBUS_PATH=/global/system/globus-5.2.5 BASH_FUNC_module()=() { eval `/global/system/Modules/$MODULE_VERSION/bin/modulecmd bash $*` } BASH_ENV=/home/danyangs/.bashrc NLSPATH=/global/software/intel/composerxe/mkl/lib/intel64/locale/en_US/%N:/global/software/intel/composerxe/lib/intel64/locale/en_US/%N:/global/software/intel/composerxe/debugger/intel64/locale/en_US/%N WGSYSTEM=orcinus PERL5LIB=/global/system/globus-5.2.5/lib/perl _LMFILES_=/global/system/Modules/modulefiles/intel/14.0.2:/global/system/Modules/modulefiles/cmake/3.2.3 MKLROOT=/global/software/intel/composerxe/mkl CXX=/global/software/intel/composerxe/bin/icpc SSH_TTY=/dev/pts/11 OMPI_FC=/global/software/intel/composerxe/bin/ifort HOSTNAME=seawolf1 SSH_CONNECTION=216.232.220.213 62648 206.12.24.161 22 HISTCONTROL=ignoredups SHLVL=1 PETSC_ARCH=linux-intel-openmpi FC=/global/software/intel/composerxe/bin/ifort MAIL=/var/spool/mail/danyangs LS_COLORS=rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lz=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.bz=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.rar=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45: LIS_DIR=/home/danyangs/soft/lis/lis-2.0.11 ================================================================================ TEST resetEnvCompilers from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1733) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1733) CC (set to /global/software/intel/composerxe/bin/icc) found in environment variables - ignoring since also set on command line CXX (set to /global/software/intel/composerxe/bin/icpc) found in environment variables - ignoring since also set on command line FC (set to /global/software/intel/composerxe/bin/ifort) found in environment variables - ignoring since also set on command line =============================================================================== ***** WARNING: F77 (set to /global/software/intel/composerxe/bin/ifort) found in environment variables - ignoring use ./configure F77=$F77 if you really want to use that value ****** =============================================================================== =============================================================================== ***** WARNING: F90 (set to /global/software/intel/composerxe/bin/ifort) found in environment variables - ignoring use ./configure F90=$F90 if you really want to use that value ****** =============================================================================== ================================================================================ TEST checkEnvCompilers from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1763) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1763) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1696) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1696) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1717) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1717) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkInitialFlags from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:460) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:460) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:635) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:635) Locate a functional C compiler Checking for program /global/software/cmake-3.2.3/bin/mpicc...not found Checking for program /global/system/globus-5.2.5/bin/mpicc...not found Checking for program /global/system/globus-5.2.5/sbin/mpicc...not found Checking for program /global/software/openmpi-1.6.5/intel/bin/mpicc...found Defined make macro "CC" to "mpicc" All intermediate test results are stored in /tmp/petsc-DTCBd6 All intermediate test results are stored in /tmp/petsc-DTCBd6/config.setCompilers Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/conftest /tmp/petsc-DTCBd6/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/conftest /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/conftest /tmp/petsc-DTCBd6/config.setCompilers/conftest.o Testing executable /tmp/petsc-DTCBd6/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-DTCBd6/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-DTCBd6/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: mpicc --version stdout: icc (ICC) 14.0.2 20140120 Copyright (C) 1985-2014 Intel Corporation. All rights reserved. Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ================================================================================ TEST checkCPreprocessor from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:674) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:674) Locate a functional C preprocessor Checking for program /global/software/cmake-3.2.3/bin/mpicc...not found Checking for program /global/system/globus-5.2.5/bin/mpicc...not found Checking for program /global/system/globus-5.2.5/sbin/mpicc...not found Checking for program /global/software/openmpi-1.6.5/intel/bin/mpicc...found Defined make macro "CPP" to "mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkCUDACompiler from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:710) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:710) Locate a functional CUDA compiler Checking for program /global/software/cmake-3.2.3/bin/nvcc...not found Checking for program /global/system/globus-5.2.5/bin/nvcc...not found Checking for program /global/system/globus-5.2.5/sbin/nvcc...not found Checking for program /global/software/openmpi-1.6.5/intel/bin/nvcc...not found Checking for program /global/software/java/jre1.6.0_14/bin/nvcc...not found Checking for program /global/software/intel/composerxe/bin/nvcc...not found Checking for program /usr/lib64/qt-3.3/bin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /global/system/moab/bin/nvcc...not found Checking for program /global/system/torque/bin/nvcc...not found Checking for program /global/software/bin/nvcc...not found Checking for program /usr/local/sbin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /opt/ibutils/bin/nvcc...not found Checking for program ./nvcc...not found Checking for program /home/danyangs/soft/petsc/petsc-3.13.6/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['cmake', 'ctest', 'cpack', 'ccmake'] ['globus-gass-cache-destroy', 'ssh-agent', 'globus-gass-cache', 'grid-change-pass-phrase', 'globus-gass-cache-util', 'grid-cert-request', 'myproxy-init', 'gsisftp', 'scp', 'myproxy-get-trustroots', 'ssh-keygen', 'globus-job-submit', 'grid-ca-sign', 'globus-gass-server-shutdown', 'grid-proxy-info', 'myproxy-info', 'myproxy-retrieve', 'globus-hostname', 'globus-url-copy', 'globus-spec-creator', 'myproxy-logon', 'globusrun', 'globus-job-run', 'gcp', 'slogin', 'globus-job-clean', 'globus-version', 'globus-gass-server', 'globus-job-cancel', 'grid-cert-diagnostics', 'grid-proxy-destroy', 'myproxy-change-pass-phrase', 'grid-proxy-init', 'myproxy-get-delegation', 'globus-job-get-output', 'grid-ca-package', 'myproxy-destroy', 'globus-job-get-output-helper', 'globus-domainname', 'globus-makefile-header', 'myproxy-store', 'gsiscp', 'ssh-add', 'grid-ca-create', 'globus-personal-gatekeeper', 'sftp', 'globus-job-status', 'ssh', 'gsissh', 'globus-sh-exec', 'globus-xioperf', 'ssh-keyscan', 'grid-cert-info'] ['gfs-gfork-master', 'gpt_build_config', 'grid-mapfile-delete-entry', 'myproxy-admin-addservice', 'gpt-query', 'gpt-install', 'gpt-build', 'myproxy-test-replicate', 'gpt_version', 'globus-build-doxygen-dependencies', 'globus-gridftp-server-enable-sshftp', 'globus-vararg-enums-doxygen-filter.pl', 'gpt-uninstall', 'globus-redia', 'gpt_save_flavor', 'myproxy-admin-load-credential', 'gpt-to-pkgconfig', 'globus-update-certificate-dir', 'gpt_generate_bin_pkg_data', 'myproxy-server-setup', 'gpt-postinstall', 'globus-gatekeeper-admin', 'globus-rvf-check', 'globus-gridftp-server', 'globus-scheduler-event-generator', 'gpt-bundle', 'gpt_get_lib_names', 'globus-gram-audit', 'globus-rvf-edit', 'myproxy-admin-query', 'gfs-dynbe-client', 'myproxy-replicate', 'myproxy-admin-adduser', 'globus-gram-streamer', 'globus-k5', 'myproxy-test', 'globus-gatekeeper', 'globus-update-doxygen-index', 'globus-job-manager', 'globus-job-manager-lock-test', 'globus-scheduler-event-generator-admin', 'sshd', 'gpt_extract_data', 'grid-mapfile-check-consistency', 'grid-default-ca', 'globus-fork-starter', 'globus-libc-hostname', 'gpt-verify', 'gpt_sort_filelist', 'myproxy-server', 'gfork', 'gpt-pkg', 'grid-mapfile-add-entry', 'globus-gridftp-password', 'myproxy-admin-change-pass', 'globus-gridftp-server-setup-chroot', 'gpt_create_automake_rules'] ['otfdecompress', 'vtrun', 'orted', 'mpiexec', 'opari', 'ompi-top', 'mpic++-vt', 'otfmerge', 'vtf77', 'ompi-iof', 'vtf90', 'ompi-profiler', 'orte-top', 'mpiCC-vt', 'otfaux', 'vtsetup', 'ortec++', 'mpiCC', 'vtcxx', 'otfmerge-mpi', 'ompi_info', 'otfshrink', 'ortecc', 'vtCC', 'orterun', 'orte-clean', 'otfprofile', 'mpif77-vt', 'otfinfo', 'vtunify', 'vtwrapper', 'otfprofile-mpi', 'mpicc', 'orte_wrapper_script', 'mpif90', 'ompi-server', 'otfcompress', 'ompi-clean', 'opal_wrapper', 'mpicxx-vt', 'ompi-probe', 'orte-iof', 'mpic++', 'mpirun', 'vtfiltergen-mpi', 'vtc++', 'vtfilter-mpi', 'otfprint', 'vtfilter', 'vtfiltergen', 'mpif90-vt', 'orteCC', 'otfconfig', 'mpicc-vt', 'vtfort', 'mpif77', 'vtcc', 'vtunify-mpi', 'orte-ps', 'mpicxx', 'vtsetup.jar', 'orte-bootproxy.sh', 'ompi-ps'] ['java_vm', 'tnameserv', 'rmiregistry', 'servertool', 'unpack200', 'keytool', 'pack200', 'ControlPanel', 'policytool', 'orbd', 'rmid', 'jcontrol', 'java', 'javaws'] ['compilervars.sh', 'ifort', 'xiar', 'fpp', 'xild', 'map_opts', 'idb', 'gdb-ia', 'inspxe-inject', 'profdcg', 'tselect', 'proforder', 'idbc', 'inspxe-runsc', 'codecov', 'inspxe-wrap', 'icpc', 'profmerge', 'icc', 'sourcechecker', 'compilervars.csh'] ['uic', 'qembed', 'qm2ts', 'lrelease', 'assistant', 'lupdate', 'qtrename140', 'findtr', 'moc', 'linguist', 'qmake', 'qt20fix'] ['gzip', 'login', 'mkdir', 'dbus-daemon', 'ls', 'unicode_stop', 'raw', 'gawk', 'date', 'sync', 'traceroute', 'unlink', 'kbd_mode', 'stty', 'arch', 'alsaunmute', 'dbus-uuidgen', 'gsk8capicmd_64', 'fgrep', 'fusermount', 'lscgroup', 'df', 'chmod', 'cgdelete', 'awk', 'unicode_start', 'rvi', 'link', 'rpm', 'grep', 'ipcalc', 'mktemp', 'cgcreate', 'cgget', 'mv', 'ping6', 'hostname', 'rm', 'readlink', 'mail', 'ed', 'rmdir', 'echo', 'ex', 'cgsnapshot', 'dbus-cleanup-sockets', 'rview', 'cpio', 'findmnt', 'cgclassify', 'plymouth', 'traceroute6', 'loadkeys', 'gunzip', 'false', 'ksh93', 'domainname', 'kill', 'zsh', 'view', 'lssubsys', 'dbus-send', 'more', 'ypdomainname', 'bash', 'find', 'su', 'true', 'uname', 'touch', 'chgrp', 'ksh', 'dash', 'ping', 'dmesg', 'cut', 'cgset', 'sort', 'zcat', 'lsblk', 'ps', 'cgexec', 'gtar', 'setserial', 'mknod', 'rnano', 'cat', 'sleep', 'redhat_lsb_init', 'tracepath6', 'umount', 'gettext', 'dd', 'nice', 'mountpoint', 'basename', 'dbus-monitor', 'mailx', 'cp', 'red', 'iptables-xml', 'egrep', 'dumpkeys', 'iptables-xml-1.4.7', 'usleep', 'csh', 'chown', 'setfont', 'keyctl', 'nano', 'sed', 'pwd', 'vi', 'nisdomainname', 'tracepath', 'tar', 'sh', 'gsk8ver_64', 'tcsh', 'env', 'ln', 'ulockmgr_server', 'mount', 'dnsdomainname', 'netstat', 'taskset'] ['bluetooth-sendto', 'nm-applet', 'less', 'groff', 'purple-remote', 'metacity-message', 'pwdhash', 'akonadi_microblog_resource', 'snmpset', 'update-gdk-pixbuf-loaders', 'ppmshift', 'aseqdump', 'expresskeys', 'md5sum', 'ppmshadow', 'gcj-dbtool', 'truncate', 'sginfo', 'pilot-schlep', 'aulast', 'wmf2eps', 'doveadm', 'repotrack', 'db43_upgrade', '.ssh.hmac', 'kleopatra', 'autopoint', 'abrt-gui', 'mmldif', 'makeinfo', 'dbiprof', 'kabc2mutt', 'ldapdelete', 'pamsharpmap', 'sessreg', 'psfgettable', 'gnome-appearance-properties', 'gzip', 'kdostartupconfig', 'rpmdev-setuptree', 'fax2tiff', 'initdb', 'compiz', 'zfgrep', 'artsplay', 'xload', 'pi3topbm', 'pbmtog3', 'intltool-extract', 'head', 'mft', 'ecryptfs-add-passphrase', 'rpcgen', 'ssh-add', 'kbdrate', 'omshell', 'timed-read', 'etags.emacs', 'pkcs11_setup', 'base64', 'bomber', 'spamassassin', 'pfbtops', 'pamstretch-gen', 'import', 'kmailcvt', 'GenIssuerAltNameExt', 'dcopquit', 'dbscan', 'xml-xread', 'dehtmldiff', 'amstex', 'ksystemlog', 'free', 'fop', 'ktimetracker', 'pnmflip', 'rarian-sk-extract', 'qdbusxml2cpp', 'ktrash', 'ktraderclient', 'gnome-network-properties', 'alsamixer', 'sg_map26', 'compare', 'db42_dump', 'gstack', 'sg_start', 'snmpconf', 'GET', 'kmag', 'ppmdmkfont', 'mcpp', 'rwho', 'updmap', 'powertop', 'ftp', 'ppdmerge', 'renice', 'bzcat', 'HtFileType', 'ngettext', 'checkXML', 'cas', 'rgb3toppm', 'kio_uiserver', 'kgrantpty', 'sg_ses', 'rdma_client', 'pdbtool', 'a2ping', 'pacat', 'gdk-pixbuf-csource', 'sndfile-regtest', 'kwin', 'xf86gammacfg', 'pbmtopi3', 'iotop', 'cifsiostat', 'bibtex', 'tiff2rgba', 'akonadi_vcard_resource', 'foomatic-compiledb', 'db43_stat', 'cd-read', 'kwrite', 'akonadiserver', 'stapsh', 'nm-connection-editor', 'mkdirhier', 'ptar', 'pgmramp', 'tomcat6-digest', 'file-roller', 'sndfile-convert', 'sharesec', 'smbclient', 'pbmtobbnbg', 'blkiomon', 'ooffice', 'sg_rmsn', 'acpi_listen', 'pnmtops', 'objdump86', 'pnmpad', 'mclasserase', 'pbmreduce', 'foomatic-datafile', 'certutil', 'smp_read_gpio', 'vmmouse_detect', 'automake', 'snmpvacm', 'wnck-urgency-monitor', 'migratepages', 'dvdrecord', 'chacl', 'ppmtoicr', 'snmpwalk', 'akregator', 'xmkmf', 'ical2vcal', 'eu-addr2line', 'gst-launch-0.10', 'rdesktop', 'od', 'c2ph', 'getkeycodes', 'msggrep', 'ksu', 'kwrapper', 'rpmquery', 'gftype', 'gvfs-rename', 'pbmtonokia', 'ciptool', 'dolphin', 'my_print_defaults', 'festival_client', 'vino-preferences', 'enc2xs', 'pbmclean', 'on_ac_power', 'antlr-java', 'rsh', 'signtool', 'co', 'ssltap', 'pc1toppm', 'tiffmedian', 'tsort', 'kdmctl', 'iproxy', 'pdffonts', 'dvd+rw-format', 'grolbp', 'selfsign-getcert', 'mstregdump', 'pilot-foto-treo650', 'gtk-window-decorator', 'xdg-mime', 'purple-url-handler', 'cl-dump.pl', 'collateindex.pl', 'foomatic-printjob', 'jinfo', 'ktuberling', 'foomatic-searchprinter', 'slogin', 'myisam_ftdump', 'chvt', 'mysqlaccess', 'isodump', 'ctags', 'fc-list', 'eject', 'efj', 'dstat', 'POST', 'ar', 'spice-vdagent', 'x86_64-redhat-linux-g++', 'solid-action-desktop-gen', 'sg_reassign', 'zless', 'ipmilan', 'ecryptfs-rewrite-file', 'keditfiletype', 'dislocate', 'snmpdf', 'f77', 'makedepend', 'snice', 'gst-inspect-0.10', 'vorbiscomment', 'ksudoku', 'dvips', 'peekfd', 'synclient', 'setmetamode', 'gpilotd-session-wrapper', 'svnsync', 'xzcmp', 'iceauth', 'hltest', 'xmlcatalog', 'khotnewstuff4', 'git-shell', 'rpmdiff', 'riostream', 'ppmtopgm', 'perl5.10.1', 'xslt-config', 'bdftopcf', 'kpsetool', 'update-patterndb', 'getfattr', 'pydoc', 'c++filt', 'ppmspread', 'grepjar', 'cheese', 'notify-send', 'pstack', 'kpsexpand', 'perlthanks', 'antlr-config', 'kopete_latexconvert.sh', 'pdbedit', 'fakeroot-sysv', 'gnuplot-wx', 'pbmtoptx', 'otflist', 'tchmttest', 'mysqld_multi', 'pgmhist', 'pod2usage', 'kjscmd', 'gtroff', 'yacc', 'ibv_ud_pingpong', 'ovf2ovp', 'PrettyPrintCrl', 'bzip2', 'sa-check_spamd', 'psfxtable', 'w', 'autoexpect', 'ul', 'sg_safte', 'pamundice', 'display-coords', 'pilot-install-hinote', 'screen', 'kblankscrn.kss', 'mtools', 'krandom.kss', 'dragon', 'freetype-config', 'system-config-date', 'kollision', 'pnmtopclxl', 'pslatex', 'mailq.sendmail', 'wavpack', 'xrefresh', 'tiffcrop', 'poweroff', 'blkparse', 'xstdcmap', 'autoscan', 'rdjpgcom', 'xdg-screensaver', 'python-config', 'gnomevfs-cat', 'fiascotopnm', 'speaker-test', 'pdfopt', 'python2', 'blktrace', 'uuidgen', 'glib-gettextize', 'korganizer', 'as86', 'gsftopk', 'gvfs-open', 'gtkhtml-editor-test', 'reposync', 'sqlite3', 'formail', 'pax11publish', 'ipa-getcert', 'pkill', 'db4-entities.pl', 'pbmtomatrixorbital', 'pinky', 'ranlib', 'arecordmidi', 'abrt-action-analyze-c', 'gnome-about', 'gnome-file-share-properties', 'syndaemon', 'man', 'amixer', 'rdoc', 'gsf-vba-dump', 'neotoppm', 'mysqldumpslow', 'gawk', 'sldtoppm', 'RSA_SecurID_getpasswd', 'flex++', 'perlbug', 'snmpgetnext', 'pgmtopgm', 'tcftest', 'merge', 'gpgsplit', 'genkey', 'pilot-csd', 'pnmtofits', 'flex', 'podchecker', 'kcheckrunning', 'virt-pki-validate', 'gst-launch', 'fixcvsdiff', 'akonadi_distlist_resource', 'run-with-aspell', 'pv.sh', 'dbusxx-introspect', 'sg_ident', 'ef', 'gnome-audio-profiles-properties', 'pnmcut', 'gpk-log', 'docbook2man', 'xsetroot', 'gather_stats_everywhere.sh', 'ekiga', 'logconv.pl', 'hpftodit', 'killbots', 'xzdec', 'rpmdev-newspec', 'gnomevfs-mv', 'znew', 'toc2cue', 'aspell', 'mapscrn', 'rpmdev-wipetree', 'lprm.cups', 'udisks', 'sgmlwhich', 'plot-llstat', 'hal-find-by-property', 'lamed', 'latex', 'xcursorgen', 'metacity', 'png2theora', 'pgmtopbm', 'rsvg-convert', 'urlview', 'mysql_upgrade', 'db42_load', 'gpgv', 'ppmdcfont', 'pygobject-codegen-2.0', 'mkhtmlindex', 'verifytree', 'blkrawverify', 'rpmdb', 'cupstestdsc', 'as', 'pamendian', 'groupwisewizard', 'mtype', 'gpgkey2ssh', 'whereis', 'gnome-search-tool', 'file', 'gtkdoc-mkdb', 'dsmtca', 'gij', 'mp2bug', 'createuser', 'xzmore', 'sudo', 'gcalctool', 'id', 'pbmtomrf', 'sha256sum', 'gvim', 'pamlookup', 'pgpewrap', 'xterm', 'berkeley_db_svc', 'gftopk', 'akonadi_knut_resource', 'pambackground', 'pdf2ps', 'gcjh', 'kross', 'kflux.kss', 'system-config-keyboard', 'chage', 'db43_archive', 'ibv_cc_pingpong', 'jcf-dump', 'pg_dump', 'klipper', 'pgmmake', 'pamtojpeg2k', 'rpm2cpio', 'soffice', 'xnmap', 'xdmshell', 'whiptail', 'sdiff', 'refer', 'sg_sat_identify', 'pnmscalefixed', 'h2ph', 'ecryptfs-unwrap-passphrase', 'oclock', 'kstartupconfig4', 'x86_64-redhat-linux-gcc', 'lftp', 'find-jar', 'pinentry-gtk-2', 'gftodvi', 'scrollkeeper-rebuilddb', 'pamrgbatopng', 'tcttest', 'rcsfreeze', 'quota', 'krandrtray', 'kde-menu', 'gnatxref', 'showchar', 'orbit2-config', 'ck-list-sessions', 'ldif-bin', 'pdfetex', 'xgettext', 'foomatic-ppd-to-xml', 'pbmlife', 'gwenview', 'abrt-dedup-client', 'sg_vpd', 'nosetests', 'mysqlhotcopy', 'mesg', 'diff3', 'pcretest', 'neqn', 'ldapurl', 'rmail.sendmail', 'nautilus-autorun-software', 'clean-binary-files', 'amidi', 'dig', 'config.sh', 'lftpget', 'zenity', 'tftopl', 'scriptreplay', 'sndfile-cmp', 'gpk-install-mime-type', 'ecryptfs-umount-private', 'gnome-font-viewer', 'pamoil', 'clear', 'pwdx', 'sha1sum', 'imginfo', 'libnetcfg', 'lsattr', 'db43_recover', 'ppl-config', 'snmpbulkwalk', 'ppmtoilbm', 'pamflip', 'gnome-desktop-item-edit', 'desktop-file-validate', 'pbmpscale', 'ppmquant', 'kaddprinterwizard', 'pilot-read-ical', 'sg_luns', 'lustre_req_history', 'i386', 'sopranocmd', 'sha1hmac', 'wmf2fig', 'stap-prep', 'mag', 'pktopbm', 'kadmin', 'gtk-builder-convert', 'pamtotiff', 'winpopup-send', 'xmlto', 'tee', 'fipscheck', 'kde4-menu', 'infocmp', 'ophelp', 'ecryptfs-rewrap-passphrase', 'prove', 'snmpstatus', 'pkgenpack', 'sopranod', 'gthumb-importer', 'abrt-cli', 'xvattr', 'pkisilent', 'msgcomm', 'mattrib', 'ldd', 'gindxbib', 'gtkdoc-depscan', 'perldoc', 'memcached', 'lprsetup.sh', 'mktexmf', 'gnatchop', 'parecord', 'grn', 'gnome-session-save', 'combinediff', 'ppmtowinicon', 'ibv_asyncwatch', 'sg_test_rwbuf', 'word-list-compress', 'kswitch', 'mcat', 'berkeley_db43_svc', 'allcm', 'mlabel', 'bmp2tiff', 'reporter-rhtsupport', 'cl-dump', 'knotes', 'kmail_sav.sh', 'mysqldump', 'purple-send-async', 'toc2cddb', 'kio_http_cache_cleaner', 'glib-mkenums', 'kfile4', 'rping', 'namei', 'eog', 'pamtopam', 'git-upload-pack', 'dcopserver', 'gss-client', 'kioexec', 'xulrunner', 'krb5-config', 'rexec', 'csplit', 'ibv_srq_pingpong', 'msghack', 'rpmdev-sha512', 'pcdovtoppm', 'gemtopnm', 'lsusb.py', 'udffsck', 'linux64', 'sgpdd-survey', 'proxy', 'cmuwmtopbm', '.fipscheck.hmac', 'pbmtoicon', 'pbmto4425', 'konsolekalendar', 'chcat', 'Xorg', 'gctags', 'kinit', 'fusermount', 'ppmdist', 'qdoc3', 'build-jar-repository', 'alsa-info.sh', 'dropuser', 'kgoldrunner', 'runcon', 'rdistd', 'rpmbuild', 'xmlsec1', 'eu-strings', 'ldclt-bin', 'abrt-action-install-debuginfo', 'ppmrainbow', 'bison', 'rundig', 'brushtopbm', 'zgrep', 'pamperspective', 'hal-setup-keymap', 'reindexdb', 'lskat', 'dcopfind', 'tiff2ps', 'pnmhisteq', 'pidstat', 'qrttoppm', 'kmid', 'dbus-launch', 'testlibraw', 'yum', 'ssh-copy-id', 'chattr', 'gimp-remote-2.6', 'logresolve', 'pre-grohtml', 'bzgrep', 'mcomp', 'font2c', 'jstatd', 'rarian-sk-get-extended-content-list', 'ksame', 'mren', 'sinjdoc', 'hg', 'sdptool', 'ncat', 'printafm', 'clusterdb', 'xvminitoppm', 'loadunimap', 'rpmdev-md5', 'ccache-swig', 'loggen', 'ipa', 'corelist', 'xml2po', 'autoreconf', 'pkcs11_listcerts', 'ppmtolj', 'crlhelper', 'pbmtoepsi', 'krunner', 'sloxwizard', 'gpg-connect-agent', 'update-mime-database', 'start_kdeinit', 'svnlook', 'ibv_dctgt', 'gview', 'rsvg-view', 'ppmmix', 'pnmshear', 'ppmdither', 'nautilus-sendto', 'l2ping', 'nproc', 'gimp-console', 'ecryptfs-insert-wrapped-passphrase-into-keyring', 'compile_et', 'ksolarwinds.kss', 'qdbus', 'sa-compile', 'reporter-upload', 'mstmtserver', 'pidgin', 'startkde', 'kjumpingcube', 'antlr', 'ipcs', 'create-jar-links', 'htdb_dump', 'ark', 'urlgrabber', 'reporter-mailx', 'ecryptfs-stat', 'logfactor5', 'opimport', 'bioradtopgm', 'tiff2pdf', 'pnmremap', 'sg_map', 'scp', 'gobject-query', 'eu-objdump', 'sg_rdac', 'kwatchgnupg', 'animate', 'pamtofits', 'kbuildsycoca', 'OCSPClient', 'utmpdump', 'gnatbind', 'gdm-screenshot', 'crlutil', 'scrollkeeper-get-toc-from-docpath', 'ppmtoarbtxt', 'stream', 'mutt', 'gnome-keybinding-properties', 'prezip-bin', 'lessecho', 'mstvpd', 'make', 'rdist', 'xcutsel', 'sane-find-scanner', 'ldapexop', 'sg_write_long', 'nm-online', 'cd-paranoia', 'sha256hmac', 'mysql_convert_table_format', 'e2pall', 'gnote', 'kpat', 'valgrind-listener', 'ld', 'cpanp-run-perl', 'setup-nsssysinit.sh', 'splain', 'gnatfind', 'ppmtojpeg', 'rpmdev-extract', 'festival', 'odbcinst', 'xev', 'rpminfo', 'pilot-install-memo', 'lzmadec', 'catchsegv', 'spectool', 'gst-typefind', 'rawtopgm', 'pilot-addresses', 'lsb_release', 'javadoc', 'plot-ost', 'gsoelim', 'pi1toppm', 'cupsdoprint', 'escputil', 'db2html', 'mckey', 'hipstopgm', 'hal-find-by-capability', 'rcsclean', 'tic', 'dsktune', 'pdftops', 'artsrec', 'fonttosfnt', 'comm', 'ypchsh', 'pamsistoaglyph', 'uic-qt4', 'gserialver', 'doxytag', 'staprun', 'awk', 'purgestat', 'alsaloop', 'phar', 'mxtar', 'grep-changelog', 'tangle', 'autoupdate', 'pnmpsnr', 'rarian-sk-get-content-list', 'ppmdraw', 'bzip2recover', 'getent', 'tput', 'cg_merge', 'x11perf', 'pgmtoppm', 'logname', 'aserver', 'jrunscript', 'xwud', 'localedef', 'foomatic-perl-data', 'mf-nowin', 'pnminterp', 'manpath', 'grolj4', 'audit2why', 'lscpu', 'kshisen', 'pnmtorle', 'bc', 'irb', 'pamscale', 'gnome-screensaver-command', 'jar', 'pbmtext', 'sirtopnm', 'jmap', 'gnome-power-preferences', 'abrt-applet', 'oocalc', 'pbmtoascii', 'tr', 'physe', 'pm-is-supported', 'openjade', 'keuphoria.kss', 'plasma-desktop', 'ibv_uc_pingpong', 'rpmdev-diff', 'pbmpage', 'db_stat', 'jconsole', 'time', 'pamtotga', 'ppmtoacad', 'bno_plot.py', 'parse-ior', 'smp_rep_general', 'tgatoppm', 'tomcat6-tool-wrapper', 'doveconf', 'imgtoppm', 'gst-feedback-0.10', 'nm', 'valgrind', 'report-newt', 'kstart', 'intltool-merge', 'pbmtoybm', 'xml-resolver', 'makeindex', 'gnome-wm', 'fc-match', 'gvfs-info', 'krdb', 'cdparanoia', 'jpeg2ktopam', 'scrollkeeper-preinstall', 'pilot-install-user', 'lookbib', 'xdg-settings', 'mysql_fix_extensions', 'dumphint', 'gcov', 'kapplymousetheme', 'smp_rep_phy_err_log', 'pkcs11_eventmgr', 'lwp-dump', 'm4', 'db_verify', 'pngtopnm', 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'lpoptions', 'sensors-conf-convert', 'funzip', 'sg_read_block_limits', 'annotate-output', 'pcregrep', 'plasmaengineexplorer', 'stunbdc', 'pgmmorphconv', 'meinproc', 'sha384hmac', 'sound-juicer', 'htdb_stat', 'korgac', 'unshare', 'cpanp', 'myisamchk', 'setup', 'lzegrep', 'ebrowse', 'etex', 'xprop', 'gnome-screensaver', 'kjs', 'lex', 'gnome-keyring-daemon', 'psidtopgm', 'atq', 'obex-data-server', 'passmass', 'fltk-config', 'pcxtoppm', 'audit2allow', 'db42_archive', 'ms_print', 'libart2-config', 'write', 'precat', 'mailstat', 'pnmtoddif', 'rarian-sk-install', 'bcc', 'sg_logs', 'xdpr', 'xmodmap', 'eu-findtextrel', 'pnmtotiff', 'setfacl', 'bdftops', 'desktop-effects', 'pamstack', 'ppmhist', 'rlog', 'scanadf', 'infotocap', 'conmen', 'cpan', 'pm-utils-bugreport-info.sh', 'kcolorchooser', 'rumakeindex', 'keditbookmarks', 'interdiff', 'conman', 'repo-graph', 'pilot-foto', 'sg_rbuf', 'cue2toc', 'glxgears', 'tex', 'attr', 'sg_stpg', 'test-moniker', 'pnmcomp', 'gnutls-serv', 'cscope', 'pkcheck', 'gpgconf', 'kpsepath', 'idevice_id', 'myisampack', 'pnmconvol', 'zsoelim', 'purple-client-example', 'ppmtopj', 'pooltype', 'vacuumdb', 'ksysguard', 'ld86', 'gvimtutor', 'mktexlsr', 'reset', 'wget', 'rarian-example', 'pbmtox10bm', 'pilot-memos', 'tgz', 'unix-lpr.sh', 'report-cli', 'pnmenlarge', 'nsupdate', 'scalixwizard', 'post-grohtml', 'dir', 'pilot-hinotes', 'kppp', 'which', 'pbmtoatk', 'lzless', 'gtester-report', 'checkpolicy', 'solid-hardware', 'pgmtofs', 'setsid', 'gtkdoc-check', 'xmlpatterns', 'ppmwheel', 'kpilot', 'ibv_rc_pingpong', 'vgdb', 'openipmish', 'gvfs-save', 'kpilotDaemon', 'ck-history', 'gettext', 'ecryptfs-setup-private', 'xml2-config', 'dsmcad', 'kdeinit_wrapper', 'authconfig', 'gnome-mouse-properties', 'mysqlimport', 'otp2ocp', 'mbchk', 'ost-survey', 'xwininfo', 'kdeinit', 'repomanage', 'pk2bm', 'btrace', 'pnmindex', 'ppmtv', 'gnome-help', 'smp_phy_test', 'hcitool', 'emacs-23.1', 'pamditherbw', 'kppplogview', 'xconsole', 'artsdsp', 'kmenuedit', 'pamdice', 'dirname', 'migratecred', 'xsltproc', 'hal-probe-vmmouse', 'pango-view', 'fallocate', 'newer', 'system-config-users', 'gnomevfs-copy', 'smp_write_gpio', 'abrt-action-generate-core-backtrace', 'rpmlint', 'lzmore', 'db42_verify', 'gvfs-less', 'migspeed', 'javac', 'kmail_fprot.sh', 'ptardiff', 'yumdownloader', 'akonadictl', 'gvfs-mkdir', 'gnome-text-editor', 'pnmquant', 'revpath', 'podselect', 'gnome-window-properties', 'scanimage', 'ppmtompeg', 'eu-readelf', 'pkiremove', 'libwacom-list-local-devices', 'bzcmp', 'rpmverify', 'ppmcolormask', 'spottopgm', 'aclocal', 'pgmkernel', 'qdbuscpp2xml', 'manpage-alert', 'xml_split', 'gs', 'rcs-checkin', 'paps', 'crash', 'gpk-update-icon', 'perf', 'pamedge', 'pod2text', 'ident', 'lupdate-qt4', 'gnat', 'imake', 'ocs', 'mysql_tzinfo_to_sql', 'pdfcsplain', 'tmpwatch', 'gdmflexiserver', 'numademo', 'db43_dump', 'repl-monitor', 'gnome-volume-control', 'oldrdist', 'zcmp', 'egroupwarewizard', 'mf', 'setcifsacl', 'gimp-2.6', 'tcutest', 'sclient', 'pnmscale', 'tty', 'kmimetypefinder', 'gkeytool', 'assistant-qt4', 'pbmtowbmp', 'kiconedit', 'pbmtopsg3', 'ac', 'sgp_dd', 'oomath', 'cupsdconf', 'xdm', 'gcc', 'stap', 'pktsetup', 'lpr.cups', 'krfb', 'sgmldiff', 'kblocks', 'kwriteconfig', 'xdg-icon-resource', 'kspaceduel', 'genkdmconf', 'script', 'pic2graph', 'ppdhtml', 'libtar', 'kdeinit4_wrapper', 'kalarmautostart', 'lwp-download', 'hg-ssh', 'gpilot-install-file', 'pamgauss', 'c89', 'xvinfo', 'x86_64-redhat-linux-gcc34', 'bzless', 'ppmtoterm', 'xml_pp', 'libpng12-config', 'db_codegen', 'xwd', 'peardev', 'x86_64-redhat-linux-g++34', 'mysql_fix_privilege_tables', 'yum-builddep', 'saytime', 'docbook2txt', 'dbus-binding-tool', 'xsetpointer', 'canberra-gtk-play', 'netaddr', 'pamstretch', 'gst-xmllaunch-0.10', 'ecryptfs-generate-tpm-key', 'gpg', 'stap-report', 'mysqlshow', 'msgconv', 'metaflac', 'gzexe', 'pango-querymodules-64', 'kcalc', 'xpr', 'pnmtosir', 'gst-typefind-0.10', 'fileshareset', 'kubrick', 'preparetips', 'pabrowse', 'mogrify', 'wc', 'gnatmake', 'intltool-prepare', 'getcert', 'kde-open', 'mysqlbug', 'kaddressbook', 'thinkjettopbm', 'ibv_dcini', 'plasmawallpaperviewer', 'units', 'ldapsearch', 'pamfile', 'eu-strip', 'pbmupc', 'system-config-authentication', 'isoinfo', 'logger', 'pilot-read-notepad', 'ppmcie', 'sadf', 'juk', 'xrandr', 'make_driver_db_lpr', 'pacmd', 'ecryptfs-setup-swap', 'perl', 'ruby', 'gtester', 'innochecksum', 'akonadi_nepomuktag_resource', 'activation-client', 'xeyes', 'mlnx_perf', 'opencv_createsamples', 'gendiff', 'svnserve', 'mailq.postfix', 'tiffsplit', 'sudoreplay', 'sepolgen-ifgen-attr-helper', 'owncloud', 'git', 'kpsewhich', 'iso-info', 'setfattr', 'kglobalaccel', 'pnmtofiasco', 'mako-render', 'ppmtomap', 'pnmnorm', 'ab', 'dos2unix', 'qmake-qt4', 'sg_requests', 'mac2unix', 'pilot-read-palmpix', 'kdostartupconfig4', 'sg_wr_mode', 'sensors', 'knode', 'pnmmontage', 'kde-cp', 'karm', 'vimdiff', 'patch', 'whoami', 'fontinst', 'ksirkskineditor', 'aulastlog', 'tcatest', 'display-buttons', 'ck-xinit-session', 'totem-video-indexer', 'uuclient', 'package-cleanup', 'dcopref', 'owncloudcmd', 'gnome-typing-monitor', 'scl', 'getcifsacl', 'zenmap-root', 'gpk-install-provide-file', 'gtnameserv', 'eclipse', 'tail', 'lacheck', 'xmlproc_parse', 'kcmshell', 'kolf', 'msgcat', 'nc', 'db42_printlog', 'wbmptopbm', 'cg_annotate', 'thumbnail', 'latrace', 'faked', 'mkfontdir', 'mysql_secure_installation', 'gok', 'rpmdev-sha384', 'authconfig-tui', 'xcam', 'gimp', 'csplain', 'eps2eps', 'gsdj500', 'kwalletd', 'sslget', 'gnatclean', 'lchsh', 'gvfs-ls', 'ksplashx_scale', 'smbtree', 'json_verify', 'infadd', 'pbmmask', 'mstmwrite', 'mstmcra', 'pilot-dlpsh', 'slabtop', 'pnmsmooth', 'scrollkeeper-get-toc-from-id', 'info', 'smp_conf_route_info', 'ktelnetservice', 'lp.cups', 'mkofm', 'onsgmls', 'watchgnupg', 'solid-powermanagement', 'smp_discover_list', 'luac', 'gtkdoc-scan', 'rasttopnm', 'jps', 'rsync', 'db_recover', 'kcminit_startup', 'lockfile', 'db_printlog', 'sum', 'mkfontscale', 'pamfunc', 'grops', 'ecryptfsd', 'pfbtopfa', 'gjarsigner', 'xzdiff', 'ipmitool', 'git-receive-pack', 'rhythmbox', 'pg_resetxlog', 'ppmtomitsu', 'xzegrep', 'CMCRevoke', 'cxpm', 'shuf', 'scl_enabled', 'theora_player', 'pamtohdiff', 'rsearch', 'mkudffs', 'lsusb', 'scrollkeeper-get-content-list', 'wish8.5', 'gnutls-cli', 'jpegtran', 'xml_merge', 'chfn', 'ppmtorgb3', 'db2rtf', 'odvips', 'ibv_xsrq_pingpong', 'pfmtopam', 'addr2line', 'rpmdev-sha1', 'rapper', 'rarian-sk-rebuild', 'lambda', 'gneqn', 'macptopbm', 'apt', 'dcopstart', 'kinstalltheme', 'k3b', 'rpmdev-sum', 'jstat', 'ppmtoleaf', 'xz', 'dc', 'pammixinterlace', 'ps2pk', 'wrudf', 'kpsereadlink', 'timeout', 'stunnel', 'tclsh8.5', 'ksmserver', 'wftopfa', 'consolehelper-gtk', 'revoker', 'pgmnorm', 'gnome-doc-prepare', 'xclock', 'ior-survey', 'native2ascii', 'memcached-tool', 'symlinks', 'updmap-sys', 'snmptranslate', 'XMLRPCsh.pl', 'pixeltool', 'ospcat', 'opjitconv', 'isodebug', 'latrace-ctl', 'ppmtoyuvsplit', 'rarian-sk-gen-uuid', 'rediff', 'scrollkeeper-install', 'imgcmp', 'gpg-error-config', 'ospent', 'pg_controldata', 'ndiff', 'svn', 'ldclt', 'rev', 'ltrace', 'glib-genmarshal', 'glxinfo', 'spctoppm', 'nfs4_editfacl', 'ibv_task_pingpong', 'expect', 'hpcdtoppm', 'myisamlog', 'openssl', 'newaliases', 'nping', 'cd-drive', 'kontact', 'scrollkeeper-config', 'gnatgcc', 'kcookiejar4', 'jarsigner', 'artsd', 'opreport', 'smbpasswd', 'sbigtopgm', 'nano', 'stap-merge', 'whatis', 'smp_rep_manufacturer', 'ppmtopuzz', 'migratecred-bin', 'koi8rxterm', 'recode-sr-latin', 'qhelpconverter', 'pbmtozinc', 'openvt', 'dvd-ram-control', 'gvfs-rm', 'getconf', 'doxygen', 'klauncher', 'getfacl', 'tree', 'pambayer', 'konqueror', 'rpmdev-sha256', 'kfontinst', 'rcsmerge', 'kapman', 'stubmaker.pl', 'ps2epsi', 'ppdi', 'jbigtopnm', 'grmid', 'ps2ps2', 'pgpring', 'pr', 'pnmmargin', 'ifnames', 'designer-qt4', 'ecryptfs-mount-private', 'cdda2ogg', 'yum-groups-manager', 'kcminit', 'pamslice', 'sss_ssh_knownhostsproxy', 'pgmnoise', 'sasl2-sample-client', 'sg_read_long', 'kdeasciiquarium.kss', 'sndfile-metadata-get', 'perltex', 'htpurge', 'jcmd', 'unlzma', 'sg_modes', 'denyhosts.py', 'usb-devices', 'gtkdoc-mkhtml', 'pod2man', 'ncursesw5-config', 'smp_rep_route_info', 'evince-previewer', 'unwrapdiff', 'system-config-services', 'lp', 'pnmhistmap', 'mkocp', 'opgprof', 'g32pbm', 'rmail.postfix', 'pamtodjvurle', 'rcs2log', 'cal', 'plutil', 'oowriter', 'kstartupconfig', 'gtkdocize', 'report', 'rpmls', 'gcov34', 'seahorse-daemon', 'AtoB', 'smbcontrol', 'ilbmtoppm', 'pilot-foto-treo600', 'appletviewer', 'resolveip', 'php', 'cameratopam', 'byacc', 'texlinks', 'test-speech', 'gst-inspect', 'gnome-dictionary', 'pbmtolj', 'ofed_rpm_info', 'purple-send', 'mgrtopbm', 'iptc', 'zipnote', 'newaliases.sendmail', 'tfmtodit', 'kdesu_stub', 'pamstereogram', 'rlogin-cwd', 'nm86', 'raw2tiff', 'crc32', 'gsf', 'mysql_find_rows', 'fc-cache', 'abrt-dump-oops', 'smbget', 'rpmdev-rmdevelrpms', 'grotty', 'CMCResponse', 'get_module', 'gemtopbm', 'rdma_server', 'GenExtKeyUsage', 'pdftex', 'lzmainfo', 'svnversion', 'kdontchangethehostname', 'java', 'lpstat.cups', 'pamtompfont', 'kuser', 'mysql_config', 'iusql', 'kiconfinder', 'resize', 'quotasync', 'ddate', 'updatedb', 'pinfo', 'kpac_dhcp_helper', 'pkexec', 'rename', 'extconv', 'rlogin', 'htstat', 'sftp', 'charmap', 'text2wave', 'kmixctrl', 'pklogin_finder', 'idn', 'xmlproc_val', 'ttmkfdir', 'invest-chart', 'ksendemail', 'cmp', 'userinfo', 'kgpgconf', 'ior-decode-2', 'pnmtopnm', 'nm-tool', 'kttsmgr', 'pamtopfm', 'plasmoidviewer', 'ypwhich', 'knetwalk', 'gnomevfs-info', 'gnome-screensaver-preferences', 'tcfmgr', 'pnmtoxwd', 'ncurses5-config', 'gnome-panel-screenshot', 'composite', 'gnatlink', 'dcopobject', 'setkeycodes', 'libglade-convert', 'xgamma', 'groups', 'wcmgr', 'ppmflash', 'smp_phy_control', 'pnmsplit', 'kfontview', 'dcopserver_shutdown', 'outocp', 'uniq', 'hal-lock', 'kbreakout', 'update-desktop-database', 'sputoppm', 'pamtouil', 'meinproc4', 'ppmtoppm', 'bzmore', 'rdfproc', 'libwmf-fontmap', 'snmptable', 'splitdiff', 'gnome-keyboard-properties', 'pktype', 'usermount', 'ppmtoneo', 'memhog', 'pammasksharpen', 'ppmtoyuv', 'mformat', 'dwell-click-applet', 'env', 'oddjob_request', 'kpseaccess', 'okteta', 'msgattrib', 'ps2ps', 'xmbind', 'intltool-update', 'qdbusviewer', 'iecset', 'devkit-power', 'kibitz', 'pgmtexture', 'mkfifo', 'mkhybrid', 'akonadi_strigi_feeder', 'plymouth-log-viewer', 'autoconf', 'libieee1284_test', 'kmines', 'gsnd', 'akonadi_ical_resource', 'pasuspender', 'jhat', 'batch', 'ypchfn', 'lfs', 'khelpcenter', 'show-changed-rco', 'find-repos-of-install', 'nl', 'sg_rtpg', 'fprintd-list', 'rarian-sk-get-scripts', 'vimx', 'gnome-screenshot', 'finger', 'btreplay', 'db_upgrade', 'pinentry', 'stat', 'cas-admin', 'tiff2bw', 'hal-is-caller-locked-out', 'lastb', 'lpunlock', 'qcatool2', 'gslp', 'linux32', 'jvmjar', 'gnome-session-properties', 'qcollectiongenerator', 'xclipboard', 'mysqladmin', 'x11perfcomp', 'pbmtogo', 'mltex', 'pear', 'eu-nm', 'iostat', 'repo-rss', 'sa-awl', 'gnatname', 'ppmtouil', 'grmic', 'gnome-pilot-make-password', 'kunittestmodrunner', 'rpmdev-vercmp', 'ddbugtopbm', 'ipmicmd', 'numactl', 'kwin_rules_dialog', 'cancel', 'pilot-debugsh', 'g3cat', 'db42_checkpoint', 'PrettyPrintCert', 'orbit-idl-2', 'akonadi_kabc_resource', 'findsmb', 'pamtopnm', 'showconsolefont', 'pilot-getrom', 'unzip', 'pwdhash-bin', 'pgrep', 'gtkdoc-mkman', 'fitstopnm', 'pnmtoplainpnm', 'Mail', 'ulockmgr_server', 'kolabwizard', 'kdf', 'pnmtopalm', 'grog', 'dbusxx-xml2cpp', 'totem-video-thumbnailer', 'shasum', 'evince', 'gtf', 'kde-config', 'thumbpdf', 'akonadi_birthdays_resource', 'mysql', 'kded', 'psktool', 'showrgb', 'gupnp-binding-tool', 'pygtk-codegen-2.0', 'gcj', 'htdig', 'virsh', 'autoheader', 'abrt-action-analyze-python', 'zipcloak', 'dumpsexp', 'ppmglobe', 'xmllint', 'pnmarith', 'gcc34', 'ksshaskpass', 'snmpdelta', 'k5srvutil', 'strings', 'nss-config', 'wvgain', 'pdfcslatex', 'xvidtune', 'ppmtopjxl', 'mozilla-plugin-config', 'weather', 'sysconfig-lm_sensors-convert', 'pf2afm', 'soelim', 'uxterm', 'osgmlnorm', 'auvirt', 'smbprint', 'gvimdiff', 'pamcomp', 'theora_encode', 'cloog', 'gpk-install-local-file', 'gnatls', 'lzma', 'gnome-volume-control-applet', 'grodvi', 'kfind', 'authconfig-gtk', 'phyzzx', 'rmail', 'aseqnet', 'indent', 'strace', 'flipdiff', 'mds-survey', 'cmsutil', 'dmp', 'lastlog', 'pilot-read-veo', 'sendiso', 'intltoolize', 'pbmtoescp2', 'install-catalog', 'pnmtopng', 'llbackup', 'arecord', 'rdate', 'jsadebugd', 'kruler', 'ucs2any', 'colrm', 'btrecord', 'mdatopbm', 'xdg-desktop-menu', 'run-parts', 'fltk-config-x86_64', 'parec', 'mstflint', 'abrt-action-save-package-data', 'automake-1.11', 'rpmgraph', 'xml_grep', 'licensecheck', 'rmic', 'kmouth', 'gnome-keyring', 'sg_inq', 'brasero', 'msgfilter', 'sim_client', 'pamthreshold', 'telnet', 'droplang', 'lpq.cups', 'pinentry-gtk', 'msql2mysql', 'gnome-calculator', 'PKCS12Export', 'osx', 'pnmtojbig', 'zforce', 'readcd', 'pbmtomda', 'curl-config', 'last', 'tiffinfo', 'pk12util', 'orca', 'pitchplay', 'lzcmp', 'numastat', 'lzfgrep', 'qhelpgenerator', 'sg_verify', 'lesskey', 'sepolgen-ifgen', 'yelp', 'okular', 'pinentry-curses', 'pbmminkowski', 'mkpasswd', 'libgnutls-config', 'pathchk', 'pdfcrop', 'lancelot', 'qtconfig-qt4', 'ldapwhoami', 'magnifier', 'db43_checkpoint', 'xmlwf', 'pbmtocmuwm', 'pamchannel', 'sndfile-info', 'dfutool', 'testparm', 'readelf', 'fipshmac', 'xlsatoms', 'rdma_xserver', 'ecryptfs-manager', 'xdg-user-dir', 'foomatic-combo-xml', 'xsettings-kde', 'pamdeinterlace', 'pmap', 'akonadi_kcal_resource', 'nmcli', 'pkmon', 'ipcrm', 'smp_conf_general', 'libreoffice', 'kbuildsycoca4', 'pilot-getram', 'pkcs11_inspect', 'htdbm', 'locale', 'xargs', 'setarch', 'ppmtoxpm', 'ksplashsimple', 'gvfs-monitor-dir', 'kcmshell4', 'gpk-repo', 'aconnect', 'show-installed', 'verify_blkparse', 'gfortran', 'kdialog', 'collectl', 'udaddy', 'htdb_load', 'ooviewdoc', 'imagetops', 'rebuild-gcj-db', 'yuvsplittoppm', 'ybmtopbm', 'hal-get-property', 'kaccess', 'pgmedge', 'pnmgamma', 'xkbcomp', 'isovfy', 'mysqlbinlog', 'identify', 'smime_keys', 'btparser', 'pgmmedian', 'pg_config', 'kget', 'pilot-read-screenshot', 'pbmtomgr', 'start-pulseaudio-x11', 'kdm', 'printf', 'cg_diff', 'plasma-overlay', 'rgb2ycbcr', 'htdump', 'dropdb', 'solterm', 'rpmsoname', 'ijsgutenprint.5.2', 'cdrwtool', 'krdc', 'gif2tiff', 'ppmpat', 'gvfs-trash', 'ppmrough', 'gnome-character-map'] ['showstate', 'mnodectl', 'mdiag', 'showstart', 'showstats', 'mauth', 'checkjob', 'mbal', 'mrmctl', 'mjobctl', 'mcredctl', 'setres', 'schedctl', 'msub', 'mstats', 'checknode', 'runjob', 'showq', 'releaseres', 'canceljob', 'changeparam', 'sethold', 'mrsvctl', 'releasehold', 'mschedctl', 'showres', 'setspri', 'mshow', 'mvmctl', 'diagnose', 'mclient', 'setqos', 'resetstats', 'showbf', 'showconfig'] ['qgpumode', 'qchkpt', 'qhold', 'printtracking', 'qalter', 'qstat', 'qsig', 'qmgr', 'pbsdsh', 'qmsg', 'qterm', 'qselect', 'hostn', 'nqs2pbs', 'printserverdb', 'tracejob', 'qorder', 'qsub', 'qdisable', 'printjob', 'chk_tree', 'qgpureset', 'pbs_tclsh', 'qrls', 'qrun', 'pbs-config', 'qnodes', 'qenable', 'qdel', 'qrerun', 'pbs_track', 'qmove', 'qstop', 'pbsnodes', 'qstart'] ['gnuplot', 'f95', 'qsort', 'xmgrace', 'f77', 'gcp', 'mpicc', 'mpif90', 'c++', 'mpic++', 'f90', 'ovito', 'archive', 'mpif77', 'ldap_info.sh', 'cc'] [] ['lrun', 'lpmove', 'dovecot', 'update-reader.conf', 'kproplog', 'postsuper', 'tgt-admin', 'wpa_passphrase', 'makewhatis', 'ntp-keygen', 'selinuxenabled', 'hwclock', 'pwconv', 'tickadj', 'cifs.idmap', 'matchpathcon', 'foomatic-addpjloptions', 'getsebool', 'cracklib-format', 'ibpm', 'ldev', 'logrotate', 'lpc.cups', 'ck-log-system-start', 'ldattach', 'postqueue', 'lid', 'set_irq_affinity_bynode.sh', 'lc_cluman', 'vendor_pre_uninstall.sh', 'ipa-compat-manage', 'ibdiscover.pl', 'ns-slapd', 'avcstat', 'ipmievd', 'in.tftpd', 'ipa-replica-manage', 'glibc_post_upgrade.x86_64', 'mkdict', 'selinuxdefcon', 'eject', 'vendstat', 'pifconfig', 'ibcheckwidth', 'grpunconv', 'sim_server', 'tunelp', 'ibchecknode', 'saquery', 'ibping', 'hciattach', 'certmonger', 'ibroute', 'rwhod', 'system-config-network-tui', 'prelink', 'gdm', 'grpck', 'postalias', 'togglesebool', 'anacron', 'adduser', 'spice-vdagentd', 'ipa-rmkeytab', 'migrate-ds.pl', 'quota_nld', 'lc_hb', 'crond', 'postmap', 'exportfs', 'system-config-keyboard', 'nfsidmap', 'efibootmgr', 'rpc.rquotad', 'lnewusers', 'userhelper', 'ibclearerrors', 'rpc.nfsd', 'saned', 'rtkitctl', 'console-kit-daemon', 'ibstatus', 'iblinkinfo', 'getenforce', 'postdrop', 'pwck', 'ibhosts', 'sss_obfuscate', 'lpinfo', 'makedumpfile', 'clockdiff', 'dump_lfts.sh', 'ibqueryerrors.pl', 'rdistd', 'userdel', 'latencytop', 'postlock', 'alsactl', 'NetworkManager', 'httxt2dbm', 'nfsiostat', 'rpcinfo', 'thin_dump', 'httpd.worker', 'praliases', 'bluetoothd', 'netscsid', 'rpc.mountd', 'vpddecode', 'convertquota', 'rpc.svcgssd', 'ss', 'isaset', 'sendmail.postfix', 'sestatus', 'nss_pcache', 'kadmin.local', 'ypserv_test', 'sasl2-shared-mechlist', 'bonobo-activation-sysconf', 'cupsreject', 'yptest', 'mcelog', 'cupsfilter', 'ledctl', 'stop-dirsrv', 'routerstat', 'llverdev', 'cifs.upcall', 'check_lft_balance.pl', 'tgtimg', 'sss_usermod', 'rotatelogs', 'foomatic-printermap-to-gutenprint-xml', 'hciconfig', 'sysinfo-snapshot.sh', 'getpcaps', 'grpconv', 'postmulti', 'ldap-agent', 'ibcheckport', 'in.authd', 'nfsstat', 'lustre_start', 'ping6', 'dump_mfts.sh', 'alternatives', 'skdump', 'uuserver', 'smartd', 'wpa_supplicant', 'lpadmin', 'groupmod', 'amtu', 'foomatic-preferred-driver', 'ibtracert', 'mountstats', 'kadmind', 'serviceconf', 'avahi-autoipd', 'addgnupghome', 'show_irq_affinity.sh', 'krb5kdc', 'ipactl', 'arp2ethers', 'dmidecode', 'run_init', 'system-config-network-cmd', 'applygnupgdefaults', 'setup-ds.pl', 'nisserver-plugin-defs', 'vsftpd', 'lsof', 'ipa-server-install', 'snmptrapd', 'ibcheckportwidth', '.ipsec.hmac', 'plymouth-set-default-theme', 'pppstats', 'nslcd', 'ipa-ca-install', 'zdump', 'latencytop-tui', 'irqbalance', 'ipa-join', 'cacertdir_rehash', 'rtcwake', 'dump-acct', 'sendmail.sendmail', 'redhat_lsb_trigger.x86_64', 'ipa-getkeytab', 'debugctl', 'dhcrelay', 'ibswitches', 'sss_groupadd', 'wirecheck', 'kprop', 'apachectl', 'pm-hibernate', 'automount', 'sssd', 'newusers', 'rpcdebug', 'krb5-send-pr', 'tgtadm', 'restorecond', 'start-statd', 'lustre_routes_config', 'ntpq', 'gpm', 'firstboot', 'ipa-replica-conncheck', 'iconvconfig.i686', 'lst', 'llverfs', 'ipa-client-automount', 'system-config-network', 'makemap', 'remove-ds.pl', 'abrt-server', 'sktest', 'tcpd', 'yppoll', 'llog_reader', 'vigr', 'httpd', 'ibdatacounts', 'll_recover_lost_found_objs', 'cupsdisable', 'ipa-csreplica-manage', 'tgtd', 'repquota', 'cracklib-check', 'cupsaddsmb', 'ownership', 'groupadd', 'fancontrol', 'postfix', 'lc_lvm', 'sss_cache', 'sm-notify', 'cpuspeed', 'pwmconfig', 'alsa-delay', 'visudo', 'readprofile', 'pm-suspend', 'lustre_config', 'setsebool', 'lhbadm', 'arpd', 'load_policy', 'ibdatacounters', 'luserdel', 'gencert', 'ibprintca.pl', 'brctl', 'mtr', 'ck-log-system-stop', 'lpasswd', 'foomatic-fix-xml', 'tzdata-update', 'set_nodedesc.sh', 'foomatic-cleanupdrivers', 'gdm-binary', 'genhomedircon', 'fdformat', 'update-smart-drivedb', 'virt-what', 'cupsd', 'inputattach', 'accept', 'chat', 'arpsnmp', 'mlnx_affinity', 'capsh', 'semodule', 'sensors-detect', 'sminfo', 'smartctl', 'ipsec', 'ibccconfig', 'ibcheckportstate', 'abrtd', 'winbindd', 'ofed_uninstall.sh', 'lstclient', 'cupsaccept', 'cupsenable', 'lustre_createcsv', 'foomatic-getpjloptions', 'arpwatch', 'ptlctl', 'atd', 'lockdev', 'ipa-client-install', 'tgt-setup-lun', 'iblinkinfo.pl', 'lc_modprobe', 'create-cracklib-dict', 'setenforce', 'warnquota', 'e2freefrag', 'postlog', 'ipa-nis-manage', 'usbmuxd', 'hald', 'start-dirsrv', 'zic', 'lustre_rmmod', 'postkick', 'restart-dirsrv', 'foomatic-nonumericalids', 'pluginviewer', 'build-locale-archive', 'lr_reader', 'ibprintrt.pl', 'htcacheclean', 'ipa-replica-prepare', 'ibcheckerrs', 'filefrag', 'lpc', 'cracklib-packer', 'sss_userdel', 'tcpdump', 'sss_groupmod', 'dump-utmp', 'ibnodes', 'set_irq_affinity_cpulist.sh', 'smtp-sink', 'saslpasswd2', 'setup', 'bccmd', 'ibqueryerrors', 'dnsmasq', 'foomatic-kitload', 'arping', 'perfquery', 'tcsd', 'wiretest', 'pppdump', 'pethtool', 'lshowmount', 'abrt-dbus', 'tracepath6', 'update-pciids', 'sss_useradd', 'lnstat', 'open_init_pty', 'showmount', 'kppp', 'yumdb', 'atrun', 'dhcpd', 'ledmon', 'ibsysstat', 'nscd', 'ypbind', 'accton', 'authconfig', 'mksock', 'safe_finger', 'usernetctl', 'gss-server', 'sserver', 'ipa-dns-install', 'pk-device-rebind', 'sss_seed', 'Kobil_mIDentity_switch', 'thin_restore', 'ibclearcounters', 'edquota', 'smpdump', 'ibprintswitch.pl', 'httpd.event', 'ibstat', 'biosdecode', 'pwunconv', 'tmpwatch', 'iconvconfig.x86_64', 'ntsysv', 'chroot', 'chpasswd', 'sshd', 'packer', 'loadgen', 'lgroupadd', 'ypset', 'pcscd', 'acpid', 'ibcheckstate', 'usermod', 'selinuxconlist', 'ntpdc', 'groupmems', 'sa', 'wpa_cli', 'ibfindnodesusing.pl', 'lustre_up14', 'system-config-authentication', 'pm-suspend-hybrid', 'suexec', 'rtacct', 'yum-complete-transaction', 'massagevendor', 'foomatic-replaceoldprinterids', 'snmpd', 'ipa-replica-install', 'luseradd', 'oddjobd', 'ibmirror', 'saslauthd', 'ibcheckerrors', 'dtomcat6', 'smtp-source', 'authconfig-tui', 'abrt-install-ccpp-hook', 'postcat', 'ipa-managed-entries', 'lctl', 'sys-unconfig', 'useradd', 'ck-log-system-restart', 'lsusb', 'ibnetdiscover', 'update-alternatives', 'semanage', 'iconvconfig', 'postconf', 'try-from', 'lgroupmod', 'ibaddr', 'ethtool', 'lc_net', '.sshd.hmac', 'nstat', 'ibportstate', 'set_irq_affinity.sh', 'ntptime', 'rpc.gssd', 'ltrack_stats', 'ntpd', 'system-config-services', 'tracepath', 'kdb5_util', 'lc_servip', 'sss_debuglevel', 'conmand', 'sss_groupdel', 'smpquery', 'reject', 'thin_check', 'lc_md', 'testsaslauthd', 'ibrouters', 'setcap', 'l_getidentity', 'lokkit', 'mailstats', 'ldap-agent-bin', 'ipa-ldap-updater', 'll_decode_filter_fid', 'ibidsverify.pl', 'mklost+found', 'ibswportwatch.pl', 'pppoe-discovery', 'cupsctl', 'callback', 'sosreport', 'pppd', 'lgroupdel', 'cracklib-unpacker', 'raid-check', 'ntpdate', 'ibcacheedit', 'vendor_post_uninstall.sh', 'isadump', 'sss_groupshow', 'authconfig-gtk', 'sendmail', 'ibccquery', 'ipa-server-certinstall', 'foomatic-extract-text', 'packagekitd', 'kpropd', 'sasldblistusers2', 'glibc_post_upgrade.i686', 'quotastats', 'pm-powersave', 'tomcat6', 'xinetd', 'tcpslice', 'getcap', 'ibchecknet', 'setquota', 'lchage', 'smrsh', 'ipa-upgradeconfig', 'lustre_routes_conversion', 'lustre_rsync', 'rpc.idmapd', 'vipw', 'lusermod', 'groupdel', 'modem-manager'] ['mlx4_vnic_info', 'hpasmcli', 'blockdev', 'rpc.statd', 'hwclock', 'matchpathcon', 'mkhomedir_helper', 'lvmdiskscan', 'restorecon', 'hpuid', 'mkfs.vfat', 'biosdevname', '.cryptsetup.hmac', 'dmevent_tool', 'scsi_id', 'pvcreate', 'cgclear', 'MAKEDEV', 'udevd', 'lvmetad', 'vgconvert', 'plymouthd', 'poweroff', 'mkdosfs', 'tune2fs', 'multipath', 'nameif', 'ctrlaltdel', 'mgetty', 'rpcbind', 'iptables-save-1.4.7', 'iptables-restore', 'mkfs.ext2', 'status', 'ppp-watch', 'dumpe2fs', 'switch_root', 'readahead', 'pidof', 'fdisk', 'fuser', 'ip6tables-save', 'badblocks', 'ifdown', 'mount.tmpfs', 'mii-tool', 'grub-md5-crypt', 'grubby', 'mpathconf', 'hpbootcfg', 'netreport', 'portrelease', 'regdbdump', 'ip6tables-restore', 'kdump', 'cryptsetup', 'vgcfgbackup', 'audispd', 'route', 'hdparm', 'alsactl', 'chkconfig', 'umount.ecryptfs_private', 'rtmon', 'vconfig', 'setfiles', 'fsck.ext2', 'vgrename', 'grub-crypt', 'vgck', 'fsadm', 'cbq', 'ifrename', 'udevadm', 'fsck.ext4', 'ip6tables-1.4.7', 'dhclient-script', 'lspcmcia', 'mkfs', 'pam_tally2', 'iptables-multi', 'busybox', 'ip6tables-save-1.4.7', 'dmsetup', 'request-key', 'ifconfig', 'losetup', 'ip', 'pvresize', 'vgmerge', 'consoletype', 'fsck.cramfs', 'reboot', 'aureport', 'pvs', 'mdmon', 'pam_timestamp_check', 'killall5', 'fstrim', 'multipathd', 'mkdumprd', 'new-kernel-pkg', 'weak-modules', 'lsinitrd', 'vgcreate', 'grub-install', 'fsck.msdos', 'initctl', 'sysctl_perf_tuning', 'hpsnmpconfig', 'auditd', 'partx', 'debugfs', 'pvmove', 'grub-terminfo', 'kexec', 'quotaoff', 'vgcfgrestore', 'lsmod', 'swapoff', 'mingetty', 'findfs', 'insmod', 'pvck', 'iwpriv', 'mlx4_vnicd', 'mount.ecryptfs_private', 'rfkill', 'reload', 'iw', 'init', 'lvmsadc', 'mdadm', 'iptables-multi-1.4.7', 'setsysfont', 'vgsplit', 'logsave', 'mkinitrd', 'mkfs.ext4dev', 'start', 'lvmsar', 'mcstransd', 'autrace', 'addpart', 'pvchange', 'vmcore-dmesg', 'syslog-ng-ctl', 'cfdisk', 'mkfs.ext3', 'crda', 'rdisc', 'vgremove', 'iwevent', 'sushell', 'ipmaddr', 'mkswap', 'iptables-save', 'start_udev', 'fsck', 'ether-wake', 'e2image', 'faillock', 'cciss_id', 'lvresize', 'ifcfg', 'delpart', 'rmmod', 'load_policy', 'fsck.ext3', 'cgrulesengd', 'ip6tables', 'iptunnel', 'hponcfg', 'connectx_port_config', 'halt', 'mount.nfs', 'resize2fs', 'setpci', 'installkernel', 'install-info', 'wipefs', 'agetty', 'mount.fuse', 'slattach', 'vgextend', 'dmeventd', 'pvscan', 'shutdown', 'fsck.ext4dev', 'rngd', 'lvextend', 'fstab-decode', 'pvdisplay', 'lvdisplay', 'lvmdump', 'setregdomain', 'unix_update', 'lvremove', 'iptables-restore-1.4.7', 'mkfs.cramfs', 'ausearch', 'depmod', 'ip6tables-restore-1.4.7', 'lvrename', 'fsfreeze', 'fsck.vfat', 'grub', 'umount.nfs', 'arp', 'quotacheck', 'e2label', 'sulogin', 'vgs', 'vgmknodes', 'vgexport', 'arping', 'lvm', 'iwspy', 'lvs', 'vgchange', 'lvcreate', 'auditctl', 'accton', 'sln', 'umount.nfs4', 'sysctl', 'iptables', 'pivot_root', 'dhclient', 'hplog', 'mke2fs', 'vgdisplay', 'iptables-1.4.7', 'quotaon', 'lspci', 'sfdisk', 'pvremove', 'clock', 'pam_console_apply', 'vgimport', 'tc', 'ldconfig', 'lvmchange', 'blkid', 'unix_chkpwd', 'dracut', 'ip6tables-multi-1.4.7', 'mii-diag', 'securetty', 'iwconfig', 'microcode_ctl', 'modinfo', 'dosfsck', 'umount.ecryptfs', 'restart', 'vgscan', 'umount.hal', 'dmraid.static', 'mount.nfs4', 'swapon', 'ip6tables-multi', 'insmod.static', 'mkfs.msdos', 'e2fsck', 'ethtool', 'iwgetid', 'genhostid', 'runuser', 'ifenslave', 'parted', 'runlevel', 'e2undo', 'iwlist', 'plipconfig', 'blkdeactivate', 'chcpu', 'kpartx', 'vgreduce', 'getkey', 'lvscan', 'portreserve', 'cgconfigparser', 'lvmconf', 'stop', 'nfs_cache_getent', 'partprobe', 'syslog-ng', 'vgimportclone', 'readahead-collector', 'mount.cifs', 'lvchange', 'sgpio', 'rsyslogd', 'mount.ecryptfs', 'lvconvert', 'modprobe', 'umount.udisks', 'service', 'lvreduce', 'telinit', 'fixfiles', 'dmraid', 'mkfs.ext4', 'ifup', 'mpathpersist', 'pccardctl', 'mount.lustre', 'dm_dso_reg_tool', 'dosfslabel', 'nologin'] ['IBMgtSim', 'ibdiagnet', 'ibis', 'ibnlparse', 'ibmssh', 'ibdmsh', 'ibdmtr', 'ibmsquit', 'ibtopodiff', 'ibdiagui', 'RunSimTest', 'mkSimNodeDir', 'ibdmchk', 'dump2slvl.pl', 'dump2psl.pl', 'ibdiagpath'] ['TAGS', 'LICENSE', 'PKG-INFO', 'makefile', 'setup.py', '.dir-locals.el', 'RDict.log', 'lib', 'config', '.gitlab-alcf-ci.yml', 'include', 'CTAGS', 'linux-intel-openmpi', 'src', 'systems', 'CONTRIBUTING', 'gmakefile', 'interfaces', 'CODE_OF_CONDUCT.md', 'configure.log', 'GNUmakefile', 'petscdir.mk', 'configure', 'share', 'gmakefile.test'] Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /home/danyangs/soft/petsc/petsc-3.13.6/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: [Errno 2] No such file or directory: '/Developer/NVIDIA/CUDA-6.5/bin' Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /home/danyangs/soft/petsc/petsc-3.13.6/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/local/cuda/bin gives errors: [Errno 2] No such file or directory: '/usr/local/cuda/bin' Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:750) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:750) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:849) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:849) Locate a functional Cxx compiler Checking for program /global/software/cmake-3.2.3/bin/mpicxx...not found Checking for program /global/system/globus-5.2.5/bin/mpicxx...not found Checking for program /global/system/globus-5.2.5/sbin/mpicxx...not found Checking for program /global/software/openmpi-1.6.5/intel/bin/mpicxx...found Defined make macro "CXX" to "mpicxx" Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-DTCBd6/config.setCompilers/conftest /tmp/petsc-DTCBd6/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-DTCBd6/config.setCompilers/conftest /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-DTCBd6/config.setCompilers/conftest /tmp/petsc-DTCBd6/config.setCompilers/conftest.o Testing executable /tmp/petsc-DTCBd6/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-DTCBd6/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-DTCBd6/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: mpicxx --version stdout: icpc (ICC) 14.0.2 20140120 Copyright (C) 1985-2014 Intel Corporation. All rights reserved. ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:890) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:890) Locate a functional Cxx preprocessor Checking for program /global/software/cmake-3.2.3/bin/mpicxx...not found Checking for program /global/system/globus-5.2.5/bin/mpicxx...not found Checking for program /global/system/globus-5.2.5/sbin/mpicxx...not found Checking for program /global/software/openmpi-1.6.5/intel/bin/mpicxx...found Defined make macro "CXXPP" to "mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicxx -E -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkFortranCompiler from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:991) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:991) Locate a functional Fortran compiler Checking for program /global/software/cmake-3.2.3/bin/mpif90...not found Checking for program /global/system/globus-5.2.5/bin/mpif90...not found Checking for program /global/system/globus-5.2.5/sbin/mpif90...not found Checking for program /global/software/openmpi-1.6.5/intel/bin/mpif90...found Defined make macro "FC" to "mpif90" Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-DTCBd6/config.setCompilers/conftest /tmp/petsc-DTCBd6/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-DTCBd6/config.setCompilers/conftest /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-DTCBd6/config.setCompilers/conftest /tmp/petsc-DTCBd6/config.setCompilers/conftest.o Testing executable /tmp/petsc-DTCBd6/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-DTCBd6/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-DTCBd6/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: mpif90 --version stdout: ifort (IFORT) 14.0.2 20140120 Copyright (C) 1985-2014 Intel Corporation. All rights reserved. ================================================================================ TEST checkFortranPreprocessor from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1028) TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1028) Locate a functional Fortran preprocessor Checking for program /global/software/cmake-3.2.3/bin/mpif90...not found Checking for program /global/system/globus-5.2.5/bin/mpif90...not found Checking for program /global/system/globus-5.2.5/sbin/mpif90...not found Checking for program /global/software/openmpi-1.6.5/intel/bin/mpif90...found Defined make macro "FPP" to "mpif90 -E" Deleting "FPP" Checking for program /global/software/cmake-3.2.3/bin/mpif90...not found Checking for program /global/system/globus-5.2.5/bin/mpif90...not found Checking for program /global/system/globus-5.2.5/sbin/mpif90...not found Checking for program /global/software/openmpi-1.6.5/intel/bin/mpif90...found Defined make macro "FPP" to "mpif90 --use cpp32" Deleting "FPP" ================================================================================ TEST checkFortranComments from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1050) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1050) Make sure fortran comment "!" works Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.F90 Successful compile: Source: program main ! comment end Fortran comments can use ! in column 1 ================================================================================ TEST checkLargeFileIO from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1181) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1181) ================================================================================ TEST checkArchiver from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1280) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1280) Check that the archiver exists and can make a library usable by the compiler Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.36.el6 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.36.el6 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /global/software/cmake-3.2.3/bin/ar...not found Checking for program /global/system/globus-5.2.5/bin/ar...not found Checking for program /global/system/globus-5.2.5/sbin/ar...not found Checking for program /global/software/openmpi-1.6.5/intel/bin/ar...not found Checking for program /global/software/java/jre1.6.0_14/bin/ar...not found Checking for program /global/software/intel/composerxe/bin/ar...not found Checking for program /usr/lib64/qt-3.3/bin/ar...not found Checking for program /bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /global/software/cmake-3.2.3/bin/ranlib...not found Checking for program /global/system/globus-5.2.5/bin/ranlib...not found Checking for program /global/system/globus-5.2.5/sbin/ranlib...not found Checking for program /global/software/openmpi-1.6.5/intel/bin/ranlib...not found Checking for program /global/software/java/jre1.6.0_14/bin/ranlib...not found Checking for program /global/software/intel/composerxe/bin/ranlib...not found Checking for program /usr/lib64/qt-3.3/bin/ranlib...not found Checking for program /bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-DTCBd6/config.setCompilers/libconf1.a /tmp/petsc-DTCBd6/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib -c /tmp/petsc-DTCBd6/config.setCompilers/libconf1.a Possible ERROR while running ranlib: exit code 1 stderr: /usr/bin/ranlib: '-c': No such file Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.36.el6 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.36.el6 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /global/software/cmake-3.2.3/bin/ar...not found Checking for program /global/system/globus-5.2.5/bin/ar...not found Checking for program /global/system/globus-5.2.5/sbin/ar...not found Checking for program /global/software/openmpi-1.6.5/intel/bin/ar...not found Checking for program /global/software/java/jre1.6.0_14/bin/ar...not found Checking for program /global/software/intel/composerxe/bin/ar...not found Checking for program /usr/lib64/qt-3.3/bin/ar...not found Checking for program /bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /global/software/cmake-3.2.3/bin/ranlib...not found Checking for program /global/system/globus-5.2.5/bin/ranlib...not found Checking for program /global/system/globus-5.2.5/sbin/ranlib...not found Checking for program /global/software/openmpi-1.6.5/intel/bin/ranlib...not found Checking for program /global/software/java/jre1.6.0_14/bin/ranlib...not found Checking for program /global/software/intel/composerxe/bin/ranlib...not found Checking for program /usr/lib64/qt-3.3/bin/ranlib...not found Checking for program /bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-DTCBd6/config.setCompilers/libconf1.a /tmp/petsc-DTCBd6/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib /tmp/petsc-DTCBd6/config.setCompilers/libconf1.a Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/conftest /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -L/tmp/petsc-DTCBd6/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ================================================================================ TEST checkSharedLinker from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1395) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1395) Check that the linker can produce shared libraries Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking shared linker mpicc using flags ['-shared'] Checking for program /global/software/cmake-3.2.3/bin/mpicc...not found Checking for program /global/system/globus-5.2.5/bin/mpicc...not found Checking for program /global/system/globus-5.2.5/sbin/mpicc...not found Checking for program /global/software/openmpi-1.6.5/intel/bin/mpicc...found Defined make macro "LD_SHARED" to "mpicc" Trying C compiler flag Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/conftest -shared /tmp/petsc-DTCBd6/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: ld: /tmp/petsc-DTCBd6/config.setCompilers/conftest.o: relocation R_X86_64_PC32 against undefined symbol `__intel_new_feature_proc_init' can not be used when making a shared object; recompile with -fPIC ld: final link failed: Bad value Rejecting linker flag -shared due to nonzero status from link Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/libconftest.so /tmp/petsc-DTCBd6/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In function `_start': (.text+0x20): undefined reference to `main' Rejected C compiler flag because it was not compatible with shared linker mpicc using flags ['-shared'] Running Executable WITHOUT threads to time it out Executing: mpicc --help | head -n 20 stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options Trying C compiler flag -PIC Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -PIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: icc: command line warning #10006: ignoring unknown option '-PIC' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -PIC due to icc: command line warning #10006: ignoring unknown option '-PIC' Rejected C compiler flag -PIC because it was not compatible with shared linker mpicc using flags ['-shared'] Trying C compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/conftest -shared -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.o Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/conftest -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -L/tmp/petsc-DTCBd6/config.setCompilers -lconftest Using shared linker mpicc with flags ['-shared'] and library extension so Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1128) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1128) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: ld: /tmp/petsc-DTCBd6/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.rodata.str1.4' can not be used when making a shared object; recompile with -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.o: could not read symbols: Bad value Rejected Cxx compiler flag because shared linker cannot handle it Running Executable WITHOUT threads to time it out Executing: mpicxx --help | head -n 20 stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options Trying Cxx compiler flag -PIC for PIC code Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -PIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: icpc: command line warning #10006: ignoring unknown option '-PIC' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -PIC due to icpc: command line warning #10006: ignoring unknown option '-PIC' Rejected Cxx compiler flag -PIC because shared linker cannot handle it Trying Cxx compiler flag -fPIC for PIC code Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.o Accepted Cxx compiler flag -fPIC for PIC code Trying FC for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers /tmp/petsc-DTCBd6/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: ld: /tmp/petsc-DTCBd6/config.setCompilers/conftest.o: relocation R_X86_64_32 against `xx_' can not be used when making a shared object; recompile with -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.o: could not read symbols: Bad value Rejected FC compiler flag because shared linker cannot handle it Running Executable WITHOUT threads to time it out Executing: mpif90 --help | head -n 20 stdout: Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] where options represents zero or more compiler options Trying FC compiler flag -PIC for PIC code Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -PIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10006: ignoring unknown option '-PIC' Source: program main end Rejecting compiler flag -PIC due to ifort: command line warning #10006: ignoring unknown option '-PIC' Rejected FC compiler flag -PIC because shared linker cannot handle it Trying FC compiler flag -fPIC for PIC code Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.o Accepted FC compiler flag -fPIC for PIC code ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1507) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1507) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: mpicc -V stdout: GNU ld version 2.20.51.0.2-5.36.el6 20100205 Trying C linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/conftest -Wl,-rpath,/global/home/danyangs/soft/petsc/petsc-3.13.6 -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/global/home/danyangs/soft/petsc/petsc-3.13.6 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: mpicc -V stdout: GNU ld version 2.20.51.0.2-5.36.el6 20100205 Trying Cxx linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-DTCBd6/config.setCompilers/conftest -Wl,-rpath,/global/home/danyangs/soft/petsc/petsc-3.13.6 /tmp/petsc-DTCBd6/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/global/home/danyangs/soft/petsc/petsc-3.13.6 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: mpicc -V stdout: GNU ld version 2.20.51.0.2-5.36.el6 20100205 Trying FC linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-DTCBd6/config.setCompilers/conftest -Wl,-rpath,/global/home/danyangs/soft/petsc/petsc-3.13.6 -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/global/home/danyangs/soft/petsc/petsc-3.13.6 ================================================================================ TEST checkLibC from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1542) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1542) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1588) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1588) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-DTCBd6/config.headers Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-DTCBd6/config.setCompilers -I/tmp/petsc-DTCBd6/config.headers /tmp/petsc-DTCBd6/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] All intermediate test results are stored in /tmp/petsc-DTCBd6/config.libraries Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.libraries/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC /tmp/petsc-DTCBd6/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.libraries/conftest -fPIC /tmp/petsc-DTCBd6/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking dynamic linker mpicc using flags ['-shared'] Checking for program /global/software/cmake-3.2.3/bin/mpicc...not found Checking for program /global/system/globus-5.2.5/bin/mpicc...not found Checking for program /global/system/globus-5.2.5/sbin/mpicc...not found Checking for program /global/software/openmpi-1.6.5/intel/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "mpicc" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/conftest -shared -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -ldl Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/tmp/petsc-DTCBd6/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/conftest -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -ldl Using dynamic linker mpicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/setCompilers.py:1637) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1637) Output module data as defines and substitutions Substituting "CC" with "mpicc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "mpicxx" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "mpif90" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 8.856260 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/PETSc/options/sharedLibraries.py:36) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:36) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/PETSc/options/sharedLibraries.py:52) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:52) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Running Executable WITHOUT threads to time it out Executing: mpicc -v Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/PETSc/options/sharedLibraries.py:97) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:97) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/PETSc/options/sharedLibraries.py:103) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:103) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries child PETSc.options.sharedLibraries 0.127936 ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/PETSc/options/indexTypes.py:39) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.003074 ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilerFlags.py:72) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:72) Get the default compiler flags Defined make macro "C_VERSION" to "icc (ICC) 14.0.2 20140120" Defined make macro "MPICC_SHOW" to "icc -I/global/software/openmpi-1.6.5/intel/include -pthread -Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64 -Wl,-rpath,/global/software/intel/composerxe/lib/intel64 -L/global/software/openmpi-1.6.5/intel/lib64 -lmpi -ldl -lm -lnuma -Wl,--export-dynamic -lrt -lnsl -lutil" Trying C compiler flag -O3 -march=native -mtune=native Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O3 -march=native -mtune=native Defined make macro "Cxx_VERSION" to "icpc (ICC) 14.0.2 20140120" Defined make macro "MPICXX_SHOW" to "icpc -I/global/software/openmpi-1.6.5/intel/include -pthread -Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64 -Wl,-rpath,/global/software/intel/composerxe/lib/intel64 -L/global/software/openmpi-1.6.5/intel/lib64 -lmpi_cxx -lmpi -ldl -lm -lnuma -Wl,--export-dynamic -lrt -lnsl -lutil" Trying Cxx compiler flag -O3 -march=native -mtune=native Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O3 -march=native -mtune=native Defined make macro "FC_VERSION" to "ifort (IFORT) 14.0.2 20140120" Defined make macro "MPIFC_SHOW" to "/global/software/intel/composerxe/bin/ifort -I/global/software/openmpi-1.6.5/intel/include -I/global/software/openmpi-1.6.5/intel/lib64 -Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64 -Wl,-rpath,/global/software/intel/composerxe/lib/intel64 -L/global/software/openmpi-1.6.5/intel/lib64 -lmpi_f90 -lmpi_f77 -lmpi -ldl -lm -lnuma -Wl,--export-dynamic -lrt -lnsl -lutil" Trying FC compiler flag -O3 -march=native -mtune=nativels Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: program main end Added FC compiler flag -O3 -march=native -mtune=nativels child config.compilerFlags 0.641210 Running Executable WITHOUT threads to time it out Executing: mpicc --help | head -n 20 stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options ================================================================================ TEST checkRestrict from config.compilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilers.py:150) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:150) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: mpicc -V stdout: GNU ld version 2.20.51.0.2-5.36.el6 20100205 All intermediate test results are stored in /tmp/petsc-DTCBd6/config.compilers Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ================================================================================ TEST checkCFormatting from config.compilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilers.py:405) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:405) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCInline from config.compilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilers.py:120) TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:120) Check for C inline keyword Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.setCompilers -I/tmp/petsc-DTCBd6/config.compilers -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilers.py:416) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:416) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.setCompilers -I/tmp/petsc-DTCBd6/config.compilers -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.compilers/conftest -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilers.py:214) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:214) Determines the libraries needed to link with C compiled code Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.setCompilers -I/tmp/petsc-DTCBd6/config.compilers -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-DTCBd6/config.compilers/conftest -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilers/conftest.o /tmp/petsc-DTCBd6/config.compilers/confc.o -ldl Possible ERROR while running linker: stderr: ifort: command line warning #10159: invalid argument for option '-m' C libraries are not needed when using Fortran linker Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.setCompilers -I/tmp/petsc-DTCBd6/config.compilers -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -fPIC /tmp/petsc-DTCBd6/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-DTCBd6/config.compilers/conftest -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.compilers/conftest.o /tmp/petsc-DTCBd6/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilers.py:1363) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1363) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=native -MMD -MP /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -fPIC -MMD -MP /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ================================================================================ TEST checkC99Flag from config.compilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilers.py:1408) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1408) Check for -std=c99 or equivalent flag Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 2 stderr: /tmp/petsc-DTCBd6/config.setCompilers/conftest.c(11): error: expected an expression for (int i=0; i<2; i++){ ^ /tmp/petsc-DTCBd6/config.setCompilers/conftest.c(11): error: identifier "i" is undefined for (int i=0; i<2; i++){ ^ compilation aborted for /tmp/petsc-DTCBd6/config.setCompilers/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to /tmp/petsc-DTCBd6/config.setCompilers/conftest.c(11): error: expected an expression for (int i=0; i<2; i++){ ^ /tmp/petsc-DTCBd6/config.setCompilers/conftest.c(11): error: identifier "i" is undefined for (int i=0; i<2; i++){ ^ compilation aborted for /tmp/petsc-DTCBd6/config.setCompilers/conftest.c (code 2) PETSc Error: No output file produced Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=native -std=c99 /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Accepted C99 compile flag: -std=c99 Running Executable WITHOUT threads to time it out Executing: mpicxx --help | head -n 20 stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options ================================================================================ TEST checkRestrict from config.compilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilers.py:150) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:150) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: mpicc -V stdout: GNU ld version 2.20.51.0.2-5.36.el6 20100205 Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -fPIC /tmp/petsc-DTCBd6/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilers.py:435) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:435) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } ================================================================================ TEST checkCxxInline from config.compilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilers.py:135) TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:135) Check for C++ inline keyword Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -fPIC /tmp/petsc-DTCBd6/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilers.py:547) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:547) Determines the libraries needed to link with C++ from C and Fortran Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -fPIC /tmp/petsc-DTCBd6/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.compilers/conftest -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.compilers/conftest.o /tmp/petsc-DTCBd6/config.compilers/confc.o -ldl C++ libraries are not needed when using C linker Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -fPIC /tmp/petsc-DTCBd6/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -I/tmp/petsc-DTCBd6/config.compilers -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-DTCBd6/config.compilers/conftest -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilers/conftest.o /tmp/petsc-DTCBd6/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: ifort: command line warning #10159: invalid argument for option '-m' /tmp/petsc-DTCBd6/config.compilers/confc.o: In function `asub()': /tmp/petsc-DTCBd6/config.compilers/conftest.cc:(.text+0x14): undefined reference to `__cxa_allocate_exception' /tmp/petsc-DTCBd6/config.compilers/conftest.cc:(.text+0x20): undefined reference to `typeinfo for int' /tmp/petsc-DTCBd6/config.compilers/conftest.cc:(.text+0x2b): undefined reference to `__cxa_throw' /tmp/petsc-DTCBd6/config.compilers/conftest.cc:(.text+0x43): undefined reference to `__cxa_begin_catch' /tmp/petsc-DTCBd6/config.compilers/conftest.cc:(.text+0x51): undefined reference to `std::cout' /tmp/petsc-DTCBd6/config.compilers/conftest.cc:(.text+0x56): undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /tmp/petsc-DTCBd6/config.compilers/conftest.cc:(.text+0x5b): undefined reference to `__cxa_end_catch' /tmp/petsc-DTCBd6/config.compilers/conftest.cc:(.text+0x6a): undefined reference to `operator delete(void*)' /tmp/petsc-DTCBd6/config.compilers/conftest.cc:(.text+0x90): undefined reference to `__cxa_end_catch' /tmp/petsc-DTCBd6/config.compilers/confc.o: In function `__sti__$E': /tmp/petsc-DTCBd6/config.compilers/conftest.cc:(.text+0xa9): undefined reference to `std::ios_base::Init::Init()' /tmp/petsc-DTCBd6/config.compilers/conftest.cc:(.text+0xbe): undefined reference to `std::ios_base::Init::~Init()' /tmp/petsc-DTCBd6/config.compilers/confc.o: In function `std::vector >::~vector()': /tmp/petsc-DTCBd6/config.compilers/conftest.cc:(.text._ZNSt6vectorIiSaIiEED1Ev[_ZNSt6vectorIiSaIiEED1Ev]+0x9): undefined reference to `operator delete(void*)' /tmp/petsc-DTCBd6/config.compilers/confc.o: In function `std::_Vector_base >::~_Vector_base()': /tmp/petsc-DTCBd6/config.compilers/conftest.cc:(.text._ZNSt12_Vector_baseIiSaIiEED2Ev[_ZNSt12_Vector_baseIiSaIiEED2Ev]+0x9): undefined reference to `operator delete(void*)' /tmp/petsc-DTCBd6/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /tmp/petsc-DTCBd6/config.compilers/confc.o:(.gnu.linkonce.d.DW.ref.__gxx_personality_v0+0x0): undefined reference to `__gxx_personality_v0' Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -fPIC /tmp/petsc-DTCBd6/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -I/tmp/petsc-DTCBd6/config.compilers -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-DTCBd6/config.compilers/conftest -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilers/conftest.o /tmp/petsc-DTCBd6/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: stderr: ifort: command line warning #10159: invalid argument for option '-m' compilers: C++ requires -lstdc++ to link with FC compiler ================================================================================ TEST checkCxxDialect from config.compilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilers.py:463) TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:463) Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any]. -with-cxx-dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 with flag: Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 4 stderr: In file included from /usr/include/c++/4.4.7/random(35), from /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc(4): /usr/include/c++/4.4.7/c++0x_warning.h(31): catastrophic error: #error directive: This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. #error This file requires compiler and library support for the upcoming \ ^ compilation aborted for /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc (code 4) Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /usr/include/c++/4.4.7/random(35), from /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc(4): /usr/include/c++/4.4.7/c++0x_warning.h(31): catastrophic error: #error directive: This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. #error This file requires compiler and library support for the upcoming \ ^ compilation aborted for /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc (code 4) PETSc Error: No output file produced checkCxxDialect: checking CXX14 with flag: -std=c++14 Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -std=c++14 -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 4 stderr: icpc: command line warning #10159: invalid argument for option '-std' In file included from /usr/include/c++/4.4.7/random(35), from /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc(4): /usr/include/c++/4.4.7/c++0x_warning.h(31): catastrophic error: #error directive: This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. #error This file requires compiler and library support for the upcoming \ ^ compilation aborted for /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc (code 4) Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } Rejecting compiler flag -std=c++14 due to nonzero status from link Rejecting compiler flag -std=c++14 due to icpc: command line warning #10159: invalid argument for option '-std' In file included from /usr/include/c++/4.4.7/random(35), from /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc(4): /usr/include/c++/4.4.7/c++0x_warning.h(31): catastrophic error: #error directive: This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. #error This file requires compiler and library support for the upcoming \ ^ compilation aborted for /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc (code 4) PETSc Error: No output file produced checkCxxDialect: checking CXX11 with flag: Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 4 stderr: In file included from /usr/include/c++/4.4.7/random(35), from /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc(4): /usr/include/c++/4.4.7/c++0x_warning.h(31): catastrophic error: #error directive: This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. #error This file requires compiler and library support for the upcoming \ ^ compilation aborted for /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc (code 4) Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /usr/include/c++/4.4.7/random(35), from /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc(4): /usr/include/c++/4.4.7/c++0x_warning.h(31): catastrophic error: #error directive: This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. #error This file requires compiler and library support for the upcoming \ ^ compilation aborted for /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc (code 4) PETSc Error: No output file produced checkCxxDialect: checking CXX11 with flag: -std=c++11 Defined "HAVE_CXX_DIALECT_CXX11" to "1" Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -std=c++11 -fPIC /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -V stdout: GNU ld version 2.20.51.0.2-5.36.el6 20100205 ================================================================================ TEST checkFortranNameMangling from config.compilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilers.py:854) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:854) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS Testing Fortran mangling type underscore with code void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -I/tmp/petsc-DTCBd6/config.compilers -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: program main call d1chk() end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-DTCBd6/config.compilers/conftest -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilers/conftest.o /tmp/petsc-DTCBd6/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: stderr: ifort: command line warning #10159: invalid argument for option '-m' compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Running Executable WITHOUT threads to time it out Executing: mpif90 --version stdout: ifort (IFORT) 14.0.2 20140120 Copyright (C) 1985-2014 Intel Corporation. All rights reserved. Defined "FORTRAN_CHARLEN_T" to "int" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilers.py:892) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:892) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -I/tmp/petsc-DTCBd6/config.compilers -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: program main call d1_chk() end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-DTCBd6/config.compilers/conftest -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilers/conftest.o /tmp/petsc-DTCBd6/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ifort: command line warning #10159: invalid argument for option '-m' /tmp/petsc-DTCBd6/config.compilers/conftest.o: In function `MAIN__': /tmp/petsc-DTCBd6/config.compilers/conftest.F90:(.text+0x41): undefined reference to `d1_chk_' ================================================================================ TEST checkFortranLibraries from config.compilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilers.py:902) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:902) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -I/tmp/petsc-DTCBd6/config.compilers -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: program main #include call MPI_Allreduce() end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-DTCBd6/config.compilers/conftest -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilers/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: ifort: command line warning #10159: invalid argument for option '-m' Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -I/tmp/petsc-DTCBd6/config.compilers -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: subroutine asub() print*,'testing' call MPI_Allreduce() return end Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern void asub_(void); int main(int argc,char **args) { asub_(); return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.compilers/conftest -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.compilers/conftest.o /tmp/petsc-DTCBd6/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-DTCBd6/config.compilers/confc.o: In function `asub_': /tmp/petsc-DTCBd6/config.compilers/conftest.F90:(.text+0x43): undefined reference to `for_write_seq_lis' /tmp/petsc-DTCBd6/config.compilers/conftest.F90:(.text+0x4a): undefined reference to `mpi_allreduce_' Fortran code cannot directly be linked with C linker, therefore will determine needed Fortran libraries Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -I/tmp/petsc-DTCBd6/config.compilers -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-DTCBd6/config.compilers/conftest -v -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilers/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: ifort: command line warning #10159: invalid argument for option '-m' ifort version 14.0.2 /global/software/intel/composer_xe_2013_sp1.2.144/bin/intel64/fortcom -mP1OPT_version=14.0-intel64 -mGLOB_diag_file=/tmp/petsc-DTCBd6/config.compilers/conftest.diag -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=447 "-mGLOB_options_string=-I/global/software/openmpi-1.6.5/intel/include -I/global/software/openmpi-1.6.5/intel/lib64 -shared-intel -I/global/software/intel/composer_xe_2013_sp1.2.144/mkl/include -L/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -o /tmp/petsc-DTCBd6/config.compilers/conftest -v -fPIC -O3 -march=native -mtune=nativels -lstdc++ -ldl -Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64 -Wl,-rpath,/global/software/intel/composerxe/lib/intel64 -L/global/software/openmpi-1.6.5/intel/lib64 -lmpi_f90 -lmpi_f77 -lmpi -ldl -lm -lnuma -Wl,--export-dynamic -lrt -lnsl -lutil" -mGLOB_position_independent_code -mGLOB_preemption_model=3 -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=/global/software/intel/composer_xe_2013_sp1.2.144/bin/intel64 -mGLOB_as_output_backup_file_name=/tmp/ifort466sdZas_.s -mIPOPT_activate -mGLOB_em64t -mGLOB_product_id_code=0x22006d8f -mGLOB_extended_instructions=0x400 -mGLOB_advanced_optim=TRUE -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=1 -mP2OPT_offload_unique_var_string=ifort715369293sbiDqt -mGLOB_opt_level=3 -mP2OPT_hlo_level=3 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=/global/software/intel/composer_xe_2013_sp1.2.144/bin/intel64/libiml_attr.so -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_mo_activate -mIPOPT_source_files_list=/tmp/ifortslisw1583X -mIPOPT_mo_global_data -mIPOPT_link_script_file=/tmp/ifortscriptYtEOrY "-mIPOPT_cmdline_link="/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o" "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o" "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o" "--eh-frame-hdr" "--build-id" "-dynamic-linker" "/lib64/ld-linux-x86-64.so.2" "-L/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64" "-L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64" "-L/global/software/openmpi-1.6.5/intel/lib64" "-o" "/tmp/petsc-DTCBd6/config.compilers/conftest" "/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64/for_main.o" "-L/global/software/intel/composerxe/mkl/lib/intel64" "-L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64" "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/" "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64" "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/" "-L/lib/../lib64" "-L/lib/../lib64/" "-L/usr/lib/../lib64" "-L/usr/lib/../lib64/" "-L/global/software/intel/composerxe/mkl/lib/intel64/" "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../" "-L/lib64" "-L/lib/" "-L/usr/lib64" "-L/usr/lib" "-rpath" "/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64" "-rpath" "/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64" "/tmp/petsc-DTCBd6/config.compilers/conftest.o" "-lstdc++" "-ldl" "-rpath" "/global/software/openmpi-1.6.5/intel/lib64" "-rpath" "/global/software/intel/composerxe/lib/intel64" "-lmpi_f90" "-lmpi_f77" "-lmpi" "-ldl" "-L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64" "-limf" "-lm" "-lnuma" "--export-dynamic" "-lrt" "-lnsl" "-lutil" "-lifport" "-lifcore" "-limf" "-lsvml" "-lm" "-lipgo" "-lintlc" "-lpthread" "-lsvml" "-lc" "-lgcc" "-lgcc_s" "-lirc_s" "-ldl" "-lc" "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o" "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o"" -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=/tmp/ipo_ifort6UjfMV.o -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarchIeGgM3 -mGLOB_linker_version=2.20.51.0.2 -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mGLOB_driver_tempfile_name=/tmp/iforttempfileyggUd4 -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/tmp/ipo_ifort6UjfMV.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE -mP1OPT_source_file_name=ipo_out.f -mP2OPT_symtab_type_copy=true /tmp/petsc-DTCBd6/config.compilers/conftest.o -mIPOPT_object_files=T -mIPOPT_assembly_files=/tmp/ifortalisEpzwxW -mIPOPT_generated_tempfiles=/tmp/ifortelisQXIaVW -mIPOPT_embedded_object_base_name=/tmp/iforteobjKZ7OiX -mIPOPT_cmdline_link_new_name=/tmp/ifortllisSl1tGX ld /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o --eh-frame-hdr --build-id -dynamic-linker /lib64/ld-linux-x86-64.so.2 -L/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -L/global/software/openmpi-1.6.5/intel/lib64 -o /tmp/petsc-DTCBd6/config.compilers/conftest /global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64/for_main.o -L/global/software/intel/composerxe/mkl/lib/intel64 -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/global/software/intel/composerxe/mkl/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -rpath /global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -rpath /global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 /tmp/petsc-DTCBd6/config.compilers/conftest.o -lstdc++ -ldl -rpath /global/software/openmpi-1.6.5/intel/lib64 -rpath /global/software/intel/composerxe/lib/intel64 -lmpi_f90 -lmpi_f77 -lmpi -ldl -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -limf -lm -lnuma --export-dynamic -lrt -lnsl -lutil -lifport -lifcore -limf -lsvml -lm -lipgo -lintlc -lpthread -lsvml -lc -lgcc -lgcc_s -lirc_s -ldl -lc /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o compilers: Checking arg ifort: compilers: Unknown arg ifort: compilers: Checking arg command compilers: Unknown arg command compilers: Checking arg line compilers: Unknown arg line compilers: Checking arg warning compilers: Unknown arg warning compilers: Checking arg #10159: compilers: Unknown arg #10159: compilers: Checking arg invalid compilers: Unknown arg invalid compilers: Checking arg argument compilers: Unknown arg argument compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg option compilers: Unknown arg option compilers: Checking arg ifort compilers: Unknown arg ifort compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 14.0.2 compilers: Unknown arg 14.0.2 compilers: Checking arg /global/software/intel/composer_xe_2013_sp1.2.144/bin/intel64/fortcom compilers: Unknown arg /global/software/intel/composer_xe_2013_sp1.2.144/bin/intel64/fortcom compilers: Checking arg -mP1OPT_version=14.0-intel64 compilers: Unknown arg -mP1OPT_version=14.0-intel64 compilers: Checking arg -mGLOB_diag_file=/tmp/petsc-DTCBd6/config.compilers/conftest.diag compilers: Unknown arg -mGLOB_diag_file=/tmp/petsc-DTCBd6/config.compilers/conftest.diag compilers: Checking arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Unknown arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Checking arg -mP2OPT_static_promotion compilers: Unknown arg -mP2OPT_static_promotion compilers: Checking arg -mP1OPT_print_version=FALSE compilers: Unknown arg -mP1OPT_print_version=FALSE compilers: Checking arg -mCG_use_gas_got_workaround=F compilers: Unknown arg -mCG_use_gas_got_workaround=F compilers: Checking arg -mP2OPT_align_option_used=TRUE compilers: Unknown arg -mP2OPT_align_option_used=TRUE compilers: Checking arg -mGLOB_gcc_version=447 compilers: Unknown arg -mGLOB_gcc_version=447 compilers: Checking arg "-mGLOB_options_string=-I/global/software/openmpi-1.6.5/intel/include compilers: Unknown arg "-mGLOB_options_string=-I/global/software/openmpi-1.6.5/intel/include compilers: Checking arg -I/global/software/openmpi-1.6.5/intel/lib64 compilers: Found include directory: /global/software/openmpi-1.6.5/intel/lib64 compilers: Checking arg -shared-intel compilers: Unknown arg -shared-intel compilers: Checking arg -I/global/software/intel/composer_xe_2013_sp1.2.144/mkl/include compilers: Found include directory: /global/software/intel/composer_xe_2013_sp1.2.144/mkl/include compilers: Checking arg -L/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 compilers: Found library directory: -L/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 compilers: Checking arg -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 compilers: Found library directory: -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 compilers: Unknown arg -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 compilers: Checking arg -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-DTCBd6/config.compilers/conftest compilers: Unknown arg /tmp/petsc-DTCBd6/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -O3 compilers: Unknown arg -O3 compilers: Checking arg -march=native compilers: Unknown arg -march=native compilers: Checking arg -mtune=nativels compilers: Unknown arg -mtune=nativels compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64 compilers: Unknown arg -Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64 compilers: Checking arg -Wl,-rpath,/global/software/intel/composerxe/lib/intel64 compilers: Unknown arg -Wl,-rpath,/global/software/intel/composerxe/lib/intel64 compilers: Checking arg -L/global/software/openmpi-1.6.5/intel/lib64 compilers: Found library directory: -L/global/software/openmpi-1.6.5/intel/lib64 compilers: Checking arg -lmpi_f90 compilers: Found library: -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Found library: -lmpi_f77 compilers: Checking arg -lmpi compilers: Found library: -lmpi compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lnuma compilers: Found library: -lnuma compilers: Checking arg -Wl,--export-dynamic compilers: Unknown arg -Wl,--export-dynamic compilers: Checking arg -lrt compilers: Found library: -lrt compilers: Checking arg -lnsl compilers: Found library: -lnsl compilers: Checking arg -lutil" compilers: Found library: -lutil compilers: Checking arg -mGLOB_position_independent_code compilers: Unknown arg -mGLOB_position_independent_code compilers: Checking arg -mGLOB_preemption_model=3 compilers: Unknown arg -mGLOB_preemption_model=3 compilers: Checking arg -mGLOB_cxx_limited_range=FALSE compilers: Unknown arg -mGLOB_cxx_limited_range=FALSE compilers: Checking arg -mCG_extend_parms=FALSE compilers: Unknown arg -mCG_extend_parms=FALSE compilers: Checking arg -mGLOB_compiler_bin_directory=/global/software/intel/composer_xe_2013_sp1.2.144/bin/intel64 compilers: Unknown arg -mGLOB_compiler_bin_directory=/global/software/intel/composer_xe_2013_sp1.2.144/bin/intel64 compilers: Checking arg -mGLOB_as_output_backup_file_name=/tmp/ifort466sdZas_.s compilers: Unknown arg -mGLOB_as_output_backup_file_name=/tmp/ifort466sdZas_.s compilers: Checking arg -mIPOPT_activate compilers: Unknown arg -mIPOPT_activate compilers: Checking arg -mGLOB_em64t compilers: Unknown arg -mGLOB_em64t compilers: Checking arg -mGLOB_product_id_code=0x22006d8f compilers: Unknown arg -mGLOB_product_id_code=0x22006d8f compilers: Checking arg -mGLOB_extended_instructions=0x400 compilers: Unknown arg -mGLOB_extended_instructions=0x400 compilers: Checking arg -mGLOB_advanced_optim=TRUE compilers: Unknown arg -mGLOB_advanced_optim=TRUE compilers: Checking arg -mP3OPT_use_mspp_call_convention compilers: Unknown arg -mP3OPT_use_mspp_call_convention compilers: Checking arg -mP2OPT_subs_out_of_bound=FALSE compilers: Unknown arg -mP2OPT_subs_out_of_bound=FALSE compilers: Checking arg -mGLOB_ansi_alias compilers: Unknown arg -mGLOB_ansi_alias compilers: Checking arg -mPGOPTI_value_profile_use=T compilers: Unknown arg -mPGOPTI_value_profile_use=T compilers: Checking arg -mP2OPT_il0_array_sections=TRUE compilers: Unknown arg -mP2OPT_il0_array_sections=TRUE compilers: Checking arg -mGLOB_offload_mode=1 compilers: Unknown arg -mGLOB_offload_mode=1 compilers: Checking arg -mP2OPT_offload_unique_var_string=ifort715369293sbiDqt compilers: Unknown arg -mP2OPT_offload_unique_var_string=ifort715369293sbiDqt compilers: Checking arg -mGLOB_opt_level=3 compilers: Unknown arg -mGLOB_opt_level=3 compilers: Checking arg -mP2OPT_hlo_level=3 compilers: Unknown arg -mP2OPT_hlo_level=3 compilers: Checking arg -mP2OPT_hlo compilers: Unknown arg -mP2OPT_hlo compilers: Checking arg -mP2OPT_hpo_rtt_control=0 compilers: Unknown arg -mP2OPT_hpo_rtt_control=0 compilers: Checking arg -mIPOPT_args_in_regs=0 compilers: Unknown arg -mIPOPT_args_in_regs=0 compilers: Checking arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Unknown arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Checking arg -mGLOB_imf_mapping_library=/global/software/intel/composer_xe_2013_sp1.2.144/bin/intel64/libiml_attr.so compilers: Unknown arg -mGLOB_imf_mapping_library=/global/software/intel/composer_xe_2013_sp1.2.144/bin/intel64/libiml_attr.so compilers: Checking arg -mIPOPT_link compilers: Unknown arg -mIPOPT_link compilers: Checking arg -mIPOPT_ipo_activate compilers: Unknown arg -mIPOPT_ipo_activate compilers: Checking arg -mIPOPT_mo_activate compilers: Unknown arg -mIPOPT_mo_activate compilers: Checking arg -mIPOPT_source_files_list=/tmp/ifortslisw1583X compilers: Unknown arg -mIPOPT_source_files_list=/tmp/ifortslisw1583X compilers: Checking arg -mIPOPT_mo_global_data compilers: Unknown arg -mIPOPT_mo_global_data compilers: Checking arg -mIPOPT_link_script_file=/tmp/ifortscriptYtEOrY compilers: Unknown arg -mIPOPT_link_script_file=/tmp/ifortscriptYtEOrY compilers: Checking arg "-mIPOPT_cmdline_link="/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o" compilers: Unknown arg -mIPOPT_cmdline_link="/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o compilers: Checking arg "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o" compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o compilers: Checking arg "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o" compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o compilers: Checking arg "--eh-frame-hdr" compilers: Unknown arg --eh-frame-hdr compilers: Checking arg "--build-id" compilers: Unknown arg --build-id compilers: Checking arg "-dynamic-linker" compilers: Unknown arg -dynamic-linker compilers: Checking arg "/lib64/ld-linux-x86-64.so.2" compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg "-L/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64" compilers: Already in lflags so skipping: -L/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 compilers: Checking arg "-L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64" compilers: Already in lflags so skipping: -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 compilers: Checking arg "-L/global/software/openmpi-1.6.5/intel/lib64" compilers: Already in lflags so skipping: -L/global/software/openmpi-1.6.5/intel/lib64 compilers: Checking arg "-o" compilers: Unknown arg -o compilers: Checking arg "/tmp/petsc-DTCBd6/config.compilers/conftest" compilers: Unknown arg /tmp/petsc-DTCBd6/config.compilers/conftest compilers: Checking arg "/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64/for_main.o" compilers: Unknown arg /global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64/for_main.o compilers: Checking arg "-L/global/software/intel/composerxe/mkl/lib/intel64" compilers: Found library directory: -L/global/software/intel/composerxe/mkl/lib/intel64 compilers: Checking arg "-L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64" compilers: Already in lflags so skipping: -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 compilers: Checking arg "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/" compilers: Found library directory: -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64" compilers: Checking arg "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/" compilers: Checking arg "-L/lib/../lib64" compilers: Checking arg "-L/lib/../lib64/" compilers: Checking arg "-L/usr/lib/../lib64" compilers: Checking arg "-L/usr/lib/../lib64/" compilers: Checking arg "-L/global/software/intel/composerxe/mkl/lib/intel64/" compilers: Already in lflags so skipping: -L/global/software/intel/composerxe/mkl/lib/intel64 compilers: Checking arg "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../" compilers: Checking arg "-L/lib64" compilers: Checking arg "-L/lib/" compilers: Checking arg "-L/usr/lib64" compilers: Checking arg "-L/usr/lib" compilers: Checking arg "-rpath" compilers: Found -rpath library: /global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 compilers: Checking arg "-rpath" compilers: Found -rpath library: /global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 compilers: Checking arg "/tmp/petsc-DTCBd6/config.compilers/conftest.o" compilers: Unknown arg /tmp/petsc-DTCBd6/config.compilers/conftest.o compilers: Checking arg "-lstdc++" compilers: Already in lflags: -lstdc++ compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "-rpath" compilers: Found -rpath library: /global/software/openmpi-1.6.5/intel/lib64 compilers: Checking arg "-rpath" compilers: Found -rpath library: /global/software/intel/composerxe/lib/intel64 compilers: Checking arg "-lmpi_f90" compilers: Already in lflags: -lmpi_f90 compilers: Checking arg "-lmpi_f77" compilers: Already in lflags: -lmpi_f77 compilers: Checking arg "-lmpi" compilers: Already in lflags: -lmpi compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "-L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64" compilers: Already in lflags so skipping: -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 compilers: Checking arg "-limf" compilers: Found library: -limf compilers: Checking arg "-lm" compilers: Already in lflags: -lm compilers: Checking arg "-lnuma" compilers: Already in lflags: -lnuma compilers: Checking arg "--export-dynamic" compilers: Unknown arg --export-dynamic compilers: Checking arg "-lrt" compilers: Already in lflags: -lrt compilers: Checking arg "-lnsl" compilers: Already in lflags: -lnsl compilers: Checking arg "-lutil" compilers: Already in lflags: -lutil compilers: Checking arg "-lifport" compilers: Found library: -lifport compilers: Checking arg "-lifcore" compilers: Found library: -lifcore compilers: Checking arg "-limf" compilers: Already in lflags: -limf compilers: Checking arg "-lsvml" compilers: Found library: -lsvml compilers: Checking arg "-lm" compilers: Already in lflags: -lm compilers: Checking arg "-lipgo" compilers: Found library: -lipgo compilers: Checking arg "-lintlc" compilers: Found library: -lintlc compilers: Checking arg "-lpthread" compilers: Found library: -lpthread compilers: Checking arg "-lsvml" compilers: Already in lflags: -lsvml compilers: Checking arg "-lc" compilers: Found system library therefore skipping: -lc compilers: Checking arg "-lgcc" compilers: Found system library therefore skipping: -lgcc compilers: Checking arg "-lgcc_s" compilers: Found library: -lgcc_s compilers: Checking arg "-lirc_s" compilers: Found library: -lirc_s compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "-lc" compilers: Found system library therefore skipping: -lc compilers: Checking arg "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o" compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o compilers: Checking arg "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o"" compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o compilers: Checking arg -mIPOPT_il_in_obj compilers: Unknown arg -mIPOPT_il_in_obj compilers: Checking arg -mIPOPT_ipo_activate_warn=FALSE compilers: Unknown arg -mIPOPT_ipo_activate_warn=FALSE compilers: Checking arg -mIPOPT_obj_output_file_name=/tmp/ipo_ifort6UjfMV.o compilers: Unknown arg -mIPOPT_obj_output_file_name=/tmp/ipo_ifort6UjfMV.o compilers: Checking arg -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarchIeGgM3 compilers: Unknown arg -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarchIeGgM3 compilers: Checking arg -mGLOB_linker_version=2.20.51.0.2 compilers: Unknown arg -mGLOB_linker_version=2.20.51.0.2 compilers: Checking arg -mGLOB_long_size_64 compilers: Unknown arg -mGLOB_long_size_64 compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mGLOB_driver_tempfile_name=/tmp/iforttempfileyggUd4 compilers: Unknown arg -mGLOB_driver_tempfile_name=/tmp/iforttempfileyggUd4 compilers: Checking arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Unknown arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Checking arg -mGLOB_async_unwind_tables=TRUE compilers: Unknown arg -mGLOB_async_unwind_tables=TRUE compilers: Checking arg -mGLOB_obj_output_file=/tmp/ipo_ifort6UjfMV.o compilers: Unknown arg -mGLOB_obj_output_file=/tmp/ipo_ifort6UjfMV.o compilers: Checking arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Unknown arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Checking arg -mP1OPT_source_file_name=ipo_out.f compilers: Unknown arg -mP1OPT_source_file_name=ipo_out.f compilers: Checking arg -mP2OPT_symtab_type_copy=true compilers: Unknown arg -mP2OPT_symtab_type_copy=true compilers: Checking arg /tmp/petsc-DTCBd6/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-DTCBd6/config.compilers/conftest.o compilers: Checking arg -mIPOPT_object_files=T compilers: Unknown arg -mIPOPT_object_files=T compilers: Checking arg -mIPOPT_assembly_files=/tmp/ifortalisEpzwxW compilers: Unknown arg -mIPOPT_assembly_files=/tmp/ifortalisEpzwxW compilers: Checking arg -mIPOPT_generated_tempfiles=/tmp/ifortelisQXIaVW compilers: Unknown arg -mIPOPT_generated_tempfiles=/tmp/ifortelisQXIaVW compilers: Checking arg -mIPOPT_embedded_object_base_name=/tmp/iforteobjKZ7OiX compilers: Unknown arg -mIPOPT_embedded_object_base_name=/tmp/iforteobjKZ7OiX compilers: Checking arg -mIPOPT_cmdline_link_new_name=/tmp/ifortllisSl1tGX compilers: Unknown arg -mIPOPT_cmdline_link_new_name=/tmp/ifortllisSl1tGX compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -L/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 compilers: Checking arg -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 compilers: Checking arg -L/global/software/openmpi-1.6.5/intel/lib64 compilers: Already in lflags so skipping: -L/global/software/openmpi-1.6.5/intel/lib64 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-DTCBd6/config.compilers/conftest compilers: Unknown arg /tmp/petsc-DTCBd6/config.compilers/conftest compilers: Checking arg /global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64/for_main.o compilers: Unknown arg /global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64/for_main.o compilers: Checking arg -L/global/software/intel/composerxe/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/global/software/intel/composerxe/mkl/lib/intel64 compilers: Checking arg -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/lib/../lib64/ compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64/ compilers: Checking arg -L/global/software/intel/composerxe/mkl/lib/intel64/ compilers: Already in lflags so skipping: -L/global/software/intel/composerxe/mkl/lib/intel64 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ compilers: Checking arg -L/lib64 compilers: Checking arg -L/lib/ compilers: Checking arg -L/usr/lib64 compilers: Checking arg -L/usr/lib compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg /tmp/petsc-DTCBd6/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-DTCBd6/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -lmpi_f90 compilers: Already in lflags: -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Already in lflags: -lmpi_f77 compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 compilers: Checking arg -limf compilers: Already in lflags: -limf compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -lnuma compilers: Already in lflags: -lnuma compilers: Checking arg --export-dynamic compilers: Unknown arg --export-dynamic compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -lnsl compilers: Already in lflags: -lnsl compilers: Checking arg -lutil compilers: Already in lflags: -lutil compilers: Checking arg -lifport compilers: Already in lflags: -lifport compilers: Checking arg -lifcore compilers: Already in lflags: -lifcore compilers: Checking arg -limf compilers: Already in lflags: -limf compilers: Checking arg -lsvml compilers: Already in lflags: -lsvml compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -lipgo compilers: Already in lflags: -lipgo compilers: Checking arg -lintlc compilers: Already in lflags: -lintlc compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lsvml compilers: Already in lflags: -lsvml compilers: Checking arg -lc compilers: Found system library therefore skipping: -lc compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lirc_s compilers: Already in lflags: -lirc_s compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lc compilers: Found system library therefore skipping: -lc compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64', '-L/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64', '-Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64', '-L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64', '-lstdc++', '-ldl', '-Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64', '-L/global/software/openmpi-1.6.5/intel/lib64', '-lmpi_f90', '-lmpi_f77', '-lmpi', '-lm', '-lnuma', '-lrt', '-lnsl', '-lutil', '-Wl,-rpath,/global/software/intel/composerxe/mkl/lib/intel64', '-L/global/software/intel/composerxe/mkl/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64', '-Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64', '-Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64', '-Wl,-rpath,/global/software/intel/composerxe/lib/intel64', '-limf', '-lifport', '-lifcore', '-lsvml', '-lipgo', '-lintlc', '-lpthread', '-lgcc_s', '-lirc_s'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used with C as the linker Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/conftest -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -L/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64 -L/global/software/openmpi-1.6.5/intel/lib64 -lmpi_f90 -lmpi_f77 -lmpi -lm -lnuma -lrt -lnsl -lutil -Wl,-rpath,/global/software/intel/composerxe/mkl/lib/intel64 -L/global/software/intel/composerxe/mkl/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64 -Wl,-rpath,/global/software/intel/composerxe/lib/intel64 -limf -lifport -lifcore -lsvml -lipgo -lintlc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/conftest -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -L/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64 -L/global/software/openmpi-1.6.5/intel/lib64 -lmpi_f90 -lmpi_f77 -lmpi -lm -lnuma -lrt -lnsl -lutil -Wl,-rpath,/global/software/intel/composerxe/mkl/lib/intel64 -L/global/software/intel/composerxe/mkl/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64 -Wl,-rpath,/global/software/intel/composerxe/lib/intel64 -limf -lifport -lifcore -lsvml -lipgo -lintlc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-DTCBd6/config.setCompilers/conftest -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -L/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64 -L/global/software/openmpi-1.6.5/intel/lib64 -lmpi_f90 -lmpi_f77 -lmpi -lm -lnuma -lrt -lnsl -lutil -Wl,-rpath,/global/software/intel/composerxe/mkl/lib/intel64 -L/global/software/intel/composerxe/mkl/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64 -Wl,-rpath,/global/software/intel/composerxe/lib/intel64 -limf -lifport -lifcore -lsvml -lipgo -lintlc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl Testing executable /tmp/petsc-DTCBd6/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-DTCBd6/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-DTCBd6/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C++ as linker compilers: Fortran libraries can be used from C++ Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -fPIC -std=c++11 /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -fPIC -std=c++11 /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-DTCBd6/config.setCompilers/conftest -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -L/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64 -L/global/software/openmpi-1.6.5/intel/lib64 -lmpi_f90 -lmpi_f77 -lmpi -lm -lnuma -lrt -lnsl -lutil -Wl,-rpath,/global/software/intel/composerxe/mkl/lib/intel64 -L/global/software/intel/composerxe/mkl/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64 -Wl,-rpath,/global/software/intel/composerxe/lib/intel64 -limf -lifport -lifcore -lsvml -lipgo -lintlc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -fPIC -std=c++11 /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-DTCBd6/config.setCompilers/conftest -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -L/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64 -L/global/software/openmpi-1.6.5/intel/lib64 -lmpi_f90 -lmpi_f77 -lmpi -lm -lnuma -lrt -lnsl -lutil -Wl,-rpath,/global/software/intel/composerxe/mkl/lib/intel64 -L/global/software/intel/composerxe/mkl/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64 -Wl,-rpath,/global/software/intel/composerxe/lib/intel64 -limf -lifport -lifcore -lsvml -lipgo -lintlc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -fPIC -std=c++11 /tmp/petsc-DTCBd6/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-DTCBd6/config.setCompilers/conftest -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -L/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -L/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64 -L/global/software/openmpi-1.6.5/intel/lib64 -lmpi_f90 -lmpi_f77 -lmpi -lm -lnuma -lrt -lnsl -lutil -Wl,-rpath,/global/software/intel/composerxe/mkl/lib/intel64 -L/global/software/intel/composerxe/mkl/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64 -Wl,-rpath,/global/software/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64 -Wl,-rpath,/global/software/openmpi-1.6.5/intel/lib64 -Wl,-rpath,/global/software/intel/composerxe/lib/intel64 -limf -lifport -lifcore -lsvml -lipgo -lintlc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl Testing executable /tmp/petsc-DTCBd6/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-DTCBd6/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-DTCBd6/config.setCompilers/conftest ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilers.py:1328) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1328) Check that Fortran can link C++ libraries Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -fPIC -std=c++11 /tmp/petsc-DTCBd6/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -O3 -march=native -mtune=native -fPIC -std=c++11 /tmp/petsc-DTCBd6/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.compilers/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -I/tmp/petsc-DTCBd6/config.compilers -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: program main call d1chk() end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-DTCBd6/config.compilers/conftest -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilers/conftest.o /tmp/petsc-DTCBd6/config.compilers/cxxobj.o /tmp/petsc-DTCBd6/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: stderr: ifort: command line warning #10159: invalid argument for option '-m' compilers: Fortran can link C++ functions ================================================================================ TEST setupFrameworkCompilers from config.compilers(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilers.py:1473) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1473) child config.compilers 9.050212 ================================================================================ TEST configureClosure from config.utilities.closure(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/utilities/closure.py:17) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C All intermediate test results are stored in /tmp/petsc-DTCBd6/config.utilities.closure Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.utilities.closure/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -I/tmp/petsc-DTCBd6/config.utilities.closure -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 2 stderr: /tmp/petsc-DTCBd6/config.utilities.closure/conftest.c(6): error: expected an identifier int (^closure)(int);; ^ compilation aborted for /tmp/petsc-DTCBd6/config.utilities.closure/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link child config.utilities.closure 0.079471 ================================================================================ TEST checkFortranTypeSizes from config.compilersFortran(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilersFortran.py:56) TESTING: checkFortranTypeSizes from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:56) Check whether real*8 is supported and suggest flags which will allow support All intermediate test results are stored in /tmp/petsc-DTCBd6/config.compilersFortran Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.compilersFortran/conftest.o -I/tmp/petsc-DTCBd6/config.setCompilers -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.compilersFortran -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: program main real*8 variable end ================================================================================ TEST checkFortranPreprocessor from config.compilersFortran(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilersFortran.py:73) TESTING: checkFortranPreprocessor from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:73) Determine if Fortran handles preprocessing properly Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.compilersFortran -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: program main #define dummy dummy #ifndef dummy fooey #endif end compilers: Fortran uses preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilersFortran(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilersFortran.py:96) TESTING: checkFortranDefineCompilerOption from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:96) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.setCompilers/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.compilersFortran -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=nativels -DTesting /tmp/petsc-DTCBd6/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: program main #define dummy dummy #ifndef Testing fooey #endif end Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortran90 from config.compilersFortran(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilersFortran.py:146) TESTING: checkFortran90 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:146) Determine whether the Fortran compiler handles F90 Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.compilersFortran/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.compilersFortran -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: program main REAL(KIND=SELECTED_REAL_KIND(10)) d INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-DTCBd6/config.compilersFortran/conftest -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilersFortran/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: ifort: command line warning #10159: invalid argument for option '-m' Fortran compiler supports F90 ================================================================================ TEST checkFortran90FreeForm from config.compilersFortran(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilersFortran.py:162) TESTING: checkFortran90FreeForm from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:162) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.compilersFortran/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.compilersFortran -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-DTCBd6/config.compilersFortran/conftest -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilersFortran/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: ifort: command line warning #10159: invalid argument for option '-m' Defined "USING_F90FREEFORM" to "1" Fortran compiler supports F90FreeForm ================================================================================ TEST checkFortran2003 from config.compilersFortran(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilersFortran.py:176) TESTING: checkFortran2003 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:176) Determine whether the Fortran compiler handles F2003 Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.compilersFortran/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.compilersFortran -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: module Base_module type, public :: base_type integer :: A contains procedure, public :: Print => BasePrint end type base_type contains subroutine BasePrint(this) class(base_type) :: this end subroutine BasePrint end module Base_module program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-DTCBd6/config.compilersFortran/conftest -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilersFortran/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: ifort: command line warning #10159: invalid argument for option '-m' Defined "USING_F2003" to "1" Fortran compiler supports F2003 ================================================================================ TEST checkFortran90Array from config.compilersFortran(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilersFortran.py:211) TESTING: checkFortran90Array from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:211) Check for F90 array interfaces Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-DTCBd6/config.compilersFortran/conftest.o -I/tmp/petsc-DTCBd6/config.libraries -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.setCompilers -I/tmp/petsc-DTCBd6/config.utilities.closure -I/tmp/petsc-DTCBd6/config.compilersFortran -fPIC -O3 -march=native -mtune=native /tmp/petsc-DTCBd6/config.compilersFortran/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.compilersFortran/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.compilersFortran -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-DTCBd6/config.compilersFortran/conftest -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilersFortran/conftest.o /tmp/petsc-DTCBd6/config.compilersFortran/fooobj.o -lstdc++ -ldl Possible ERROR while running linker: stderr: ifort: command line warning #10159: invalid argument for option '-m' Testing executable /tmp/petsc-DTCBd6/config.compilersFortran/conftest to see if it can be run Executing: /tmp/petsc-DTCBd6/config.compilersFortran/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-DTCBd6/config.compilersFortran/conftest stdout: arrays [0x601480 0x601480 0x601480] arrays [0x601420 0x601520 0x601420] pointers do not match! [0xffffffff 0x7fff2c3acb78] [(nil)] ERROR while running executable: Could not execute "['/tmp/petsc-DTCBd6/config.compilersFortran/conftest']": arrays [0x601480 0x601480 0x601480] arrays [0x601420 0x601520 0x601420] pointers do not match! [0xffffffff 0x7fff2c3acb78] [(nil)] compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortran90AssumedType from config.compilersFortran(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilersFortran.py:298) TESTING: checkFortran90AssumedType from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:298) Running Executable WITHOUT threads to time it out Executing: mpif90 -qversion ================================================================================ TEST checkFortranModuleInclude from config.compilersFortran(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilersFortran.py:303) TESTING: checkFortranModuleInclude from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:303) Figures out what flag is used to specify the include path for Fortran modules Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.compilersFortran/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.compilersFortran -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: module configtest integer testint parameter (testint = 42) end module configtest Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.compilersFortran/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.compilersFortran -I/tmp/petsc-DTCBd6/config.setCompilers -I/tmp/petsc-DTCBd6/config.compilersFortran/confdir -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: program main use configtest write(*,*) testint end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /tmp/petsc-DTCBd6/config.compilersFortran/conftest -I/tmp/petsc-DTCBd6/config.compilersFortran/confdir -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilersFortran/conftest.o /tmp/petsc-DTCBd6/config.compilersFortran/configtest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: ifort: command line warning #10159: invalid argument for option '-m' compilers: Fortran module include flag -I found ================================================================================ TEST checkFortranModuleOutput from config.compilersFortran(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilersFortran.py:369) TESTING: checkFortranModuleOutput from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:369) Figures out what flag is used to specify the include path for Fortran modules Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.compilersFortran/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.compilersFortran -I/tmp/petsc-DTCBd6/config.setCompilers -module /tmp/petsc-DTCBd6/config.compilersFortran/confdir -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10159: invalid argument for option '-m' Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module found ================================================================================ TEST checkFortranTypeStar from config.compilersFortran(/global/home/danyangs/soft/petsc/petsc-3.13.6/config/BuildSystem/config/compilersFortran.py:135) TESTING: checkFortranTypeStar from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:135) Determine whether the Fortran compiler handles type(*) Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /tmp/petsc-DTCBd6/config.compilersFortran/conftest.o -I/tmp/petsc-DTCBd6/config.compilers -I/tmp/petsc-DTCBd6/config.compilersFortran -I/tmp/petsc-DTCBd6/config.setCompilers -fPIC -O3 -march=native -mtune=nativels /tmp/petsc-DTCBd6/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: ifort: command line warning #10159: invalid argument for option '-m' /tmp/petsc-DTCBd6/config.compilersFortran/conftest.F90(4): error #5082: Syntax error, found '::' when expecting one of: , ; type(*) :: b(:) --------------^ /tmp/petsc-DTCBd6/config.compilersFortran/conftest.F90(8): error #5082: Syntax error, found END-OF-FILE when expecting one of: