Executing: uname -s stdout: Linux ================================================================================ ================================================================================ Starting configure run at Thu, 01 Apr 2021 13:25:21 -0400 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-fc=0 --CFLAGS=-g --CXXFLAGS=-g --COPTFLAGS=" -O" --CXXOPTFLAGS=" -O" --with-ctable=0 --with-ssl=0 --with-batch=0 --with-cxx=mpicxx --with-mpiexec=jsrun --download-kokkos=1 --download-kokkos-kernels --with-kokkos-cuda-arch=VOLTA70 --with-cuda=0 --download-p4est=1 --download-zlib --download-metis --with-blaslapack-lib="-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack" --with-cc=mpicc --with-shared-libraries=1 --with-x=0 --with-64-bit-indices=0 --with-make-np=8 --with-debugging=0 PETSC_ARCH=arch-summit-opt-gnu-kokkos-omp --with-openmp=1 --with-threadsafety=1 --with-log=0 Working directory: /gpfs/alpine/csc314/scratch/adams/petsc Machine platform: ('Linux', 'login4', '4.14.0-115.21.2.el7a.ppc64le', '#1 SMP Thu May 7 22:22:31 UTC 2020', 'ppc64le', 'ppc64le') Python version: 2.7.5 (default, Feb 26 2020, 09:25:01) [GCC 4.8.5 20150623 (Red Hat 4.8.5-36)] ================================================================================ Environmental variables LMOD_FAMILY_MPI=spectrum-mpi XL_LINKER=/sw/summit/xalt/1.2.1/bin/ld __LMOD_REF_COUNT_MODULEPATH=/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/spectrum-mpi/10.3.1.2-20200121-awz2q5b/gcc/6.4.0:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core:1;/sw/summit/modulefiles/core:1 LMOD_SETTARG_FULL_SUPPORT=no PAMI_IBV_ADAPTER_AFFINITY=1 CUDA_DIR=/sw/summit/cuda/10.1.243 SHELL=/bin/bash LMOD_MPI_VERSION=10.3.1.2-20200121-awz2q5b HISTSIZE=100 OLCF_FAMILY_MPI=spectrum-mpi MANPATH=/sw/summit/cuda/10.1.243/doc/man:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/share/man:/sw/summit/gcc/6.4.0/share/man:/sw/sources/hpss/man:/sw/summit/lmod/8.2.10/share/man:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/man::/opt/puppetlabs/puppet/share/man XDG_RUNTIME_DIR=/run/user/62983 PYTHONPATH=/sw/summit/xalt/1.2.1/site:/sw/summit/xalt/1.2.1/libexec __LMOD_REF_COUNT_LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib:1 LMOD_FAMILY_COMPILER_VERSION=6.4.0 __LMOD_REF_COUNT_CMAKE_PREFIX_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb:1;/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43:1 __Init_Default_Modules=1 XDG_SESSION_ID=7235 LMOD_FAMILY_COMPILER=gcc OLCF_LMOD_ROOT=/sw/summit OMPI_FC=gfortran HOSTNAME=login4 JSM_JSRUN_NO_WARN_TOPOLOGY=1 DDT_HOME=/sw/summit/forge/20.0.1 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OMPI_MCA_io=romio321 __LMOD_REF_COUNT_MANPATH=/sw/summit/cuda/10.1.243/doc/man:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/share/man:1;/sw/summit/gcc/6.4.0/share/man:1;/sw/sources/hpss/man:1;/sw/summit/lmod/8.2.10/share/man:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/man:1;/opt/puppetlabs/puppet/share/man:1 OLCF_NETLIB_LAPACK_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm OLCF_CUDA_ROOT=/sw/summit/cuda/10.1.243 LESSOPEN=||/usr/bin/lesspipe.sh %s LSF_BINDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin _ModuleTable008_=ZmlsZXMvY29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvc3cvc3VtbWl0L21vZHVsZWZpbGVzL3NpdGUvbGludXgtcmhlbDctcHBjNjRsZS9Db3JlOi9zdy9zdW1taXQvbW9kdWxlZmlsZXMvY29yZSIsfQ== CPATH=/sw/summit/cuda/10.1.243/include:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/include:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include USER=adams LSF_ENVDIR=/opt/ibm/spectrumcomputing/lsf/conf PAMI_ENABLE_STRIPING=0 PS1=\A\[\033[;1m\]\[\033[35m\]$(ret=$?; [ $ret -ne 0 ] && echo -n " $ret")\[\033[;0m\] \[\033[34m\]$(__git_ps1 '%s') \[\033[32m\]\w\[\033[0m\]\$ OLCF_SPECTRUM_MPI_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb __LMOD_REF_COUNT_LD_LIBRARY_PATH=/sw/summit/cuda/10.1.243/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib:1;/sw/summit/gcc/6.4.0/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib:1 SHLVL=1 __LMOD_REF_COUNT_ACLOCAL_PATH=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/share/aclocal:1 DISPLAY=localhost:30.0 OLCF_FAMILY_COMPILER=gcc PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc OPAL_PREFIX=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb LMOD_FAMILY_MPI_VERSION=10.3.1.2-20200121 MODULESHOME=/sw/summit/lmod/8.2.10 XALT_ETC_DIR=/sw/summit/xalt/1.2.1/etc _ModuleTable007_=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 __LMOD_REF_COUNT_PKG_CONFIG_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/pkgconfig:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/pkgconfig:1 _ModuleTable001_=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 __LMOD_REF_COUNT_PYTHONPATH=/sw/summit/xalt/1.2.1/site:1;/sw/summit/xalt/1.2.1/libexec:1 LMOD_VERSION=8.2.10 PAMI_CUDA_AWARE_THRESH=320000 PKG_CONFIG_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/pkgconfig:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/pkgconfig BASH_ENV=/sw/summit/lmod/8.2.10/init/bash __LMOD_REF_COUNT_PATH=/sw/sources/lsf-tools/2.0/summit/bin:2;/sw/summit/xalt/1.2.1/bin:1;/sw/summit/cuda/10.1.243/bin:1;/sw/summit/forge/20.0.1/bin:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin:1;/sw/summit/gcc/6.4.0/bin:1;/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin:1;/sw/sources/hpss/bin:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin:1;/opt/ibm/csm/bin:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1;/opt/ibm/flightlog/bin:1;/opt/ibutils/bin:1;/opt/ibm/spectrum_mpi/jsm_pmix/bin:1;/opt/puppetlabs/bin:1;/usr/lpp/mmfs/bin:1 _=/ccs/home/adams/arch-summit-opt-gnu-kokkos-omp.py MODULEPATH=/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/spectrum-mpi/10.3.1.2-20200121-awz2q5b/gcc/6.4.0:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core:/sw/summit/modulefiles/core SSH_CONNECTION=160.91.202.152 42236 128.219.134.74 22 OMP_NUM_THREADS=1 OLCF_FAMILY_MPI_VERSION=10.3.1.2-20200121 AUTOGEN_PARALLEL=1 LMOD_MPI_NAME=spectrum-mpi _LMFILES_=/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/hsi/5.0.2.p5.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/xalt/1.2.1.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/lsf-tools/2.0.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/darshan-runtime/3.1.7.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/DefApps.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cmake/3.18.2.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/gcc/6.4.0.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0/spectrum-mpi/10.3.1.2-20200121.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0/netlib-lapack/3.8.0.lua:/sw/summit/modulefiles/core/forge/20.0.1:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cuda/10.1.243 OMPI_CXX=g++ __LMOD_REF_COUNT_LOADEDMODULES=hsi/5.0.2.p5:1;xalt/1.2.1:1;lsf-tools/2.0:1;darshan-runtime/3.1.7:1;DefApps:1;cmake/3.18.2:1;gcc/6.4.0:1;spectrum-mpi/10.3.1.2-20200121:1;netlib-lapack/3.8.0:1;forge/20.0.1:1;cuda/10.1.243:1 LMOD_DIR=/sw/summit/lmod/8.2.10/libexec GIT_PS1_SHOWDIRTYSTATE=1 PAMI_IBV_ENABLE_DCT=1 LMOD_PKG=/sw/summit/lmod/8.2.10 MODULEPATH_ROOT=/sw/summit/modulefiles HOME=/ccs/home/adams LD_LIBRARY_PATH=/sw/summit/cuda/10.1.243/lib64:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib:/sw/summit/gcc/6.4.0/lib64:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib LSF_SERVERDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc CUDAPATH=/sw/summit/cuda/10.1.243 LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib LMOD_SYSTEM_NAME=summit __LMOD_REF_COUNT__LMFILES_=/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/hsi/5.0.2.p5.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/xalt/1.2.1.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/lsf-tools/2.0.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/darshan-runtime/3.1.7.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/DefApps.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cmake/3.18.2.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/gcc/6.4.0.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0/spectrum-mpi/10.3.1.2-20200121.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0/netlib-lapack/3.8.0.lua:1;/sw/summit/modulefiles/core/forge/20.0.1:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cuda/10.1.243:1 GIT_PS1_SHOWUPSTREAM=auto CUDA_TOOLKIT_ROOT_DIR=/sw/summit/cuda/10.1.243 _ModuleTable_Sz_=8 OLCF_MODULEPATH_ROOT=/sw/summit/modulefiles OMPI_CC=gcc __LMOD_REF_COUNT_CPATH=/sw/summit/cuda/10.1.243/include:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/include:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include:1 LMOD_CMD=/sw/summit/lmod/8.2.10/libexec/lmod PROJWORK=/gpfs/alpine/proj-shared _ModuleTable005_=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 BASH_FUNC_module()=() { eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh) } XLSF_UIDDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib/uid OLCF_DARSHAN_RUNTIME_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43 OLCF_GCC_ROOT=/sw/summit/gcc/6.4.0 SSH_TTY=/dev/pts/95 CVS_RSH=ssh _ModuleTable006_=dGgiXT0wLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJuZXRsaWItbGFwYWNrIix9LFsic3BlY3RydW0tbXBpIl09e1siZm4iXT0iL3N3L3N1bW1pdC9tb2R1bGVmaWxlcy9zaXRlL2xpbnV4LXJoZWw3LXBwYzY0bGUvZ2NjLzYuNC4wL3NwZWN0cnVtLW1waS8xMC4zLjEuMi0yMDIwMDEyMS5sdWEiLFsiZnVsbE5hbWUiXT0ic3BlY3RydW0tbXBpLzEwLjMuMS4yLTIwMjAwMTIxIixbImxvYWRPcmRlciJdPTgscHJvcFQ9e30sWyJzdGFja0RlcHRoIl09MCxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0ic3BlY3RydW0tbXBpIix9LHhhbHQ9e1siZm4iXT0iL3N3L3N1bW1pdC9tb2R1bGVmaWxlcy9zaXRlL2xpbnV4LXJoZWw3LXBwYzY0bGUvQ29yZS94 OLDPWD=/gpfs/alpine/csc314/scratch/adams/petsc/src/ts/utils/dmplexlandau/tutorials/tput PAMI_IBV_ENABLE_OOO_AR=1 OMPI_LD_PRELOAD_PREPEND=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/libdarshan.so LMOD_SYSTEM_DEFAULT_MODULES=DefApps SSH_CLIENT=160.91.202.152 42236 22 LOGNAME=adams ACLOCAL_PATH=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/share/aclocal PATH=/sw/sources/lsf-tools/2.0/summit/bin:/sw/summit/xalt/1.2.1/bin:/sw/summit/cuda/10.1.243/bin:/sw/summit/forge/20.0.1/bin:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin:/sw/summit/gcc/6.4.0/bin:/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin:/sw/sources/hpss/bin:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin:/opt/ibm/csm/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibm/flightlog/bin:/opt/ibutils/bin:/opt/ibm/spectrum_mpi/jsm_pmix/bin:/opt/puppetlabs/bin:/usr/lpp/mmfs/bin TERM=xterm-256color CMAKE_PREFIX_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb:/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43 OPAL_LIBDIR=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib MEMBERWORK=/gpfs/alpine/scratch/adams LSF_LIBDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib OLCF_CMAKE_ROOT=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna _ModuleTable003_=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 XALT_OLCF=1 __LMOD_Priority_PATH=/sw/sources/lsf-tools/2.0/summit/bin:-9999;/sw/summit/xalt/1.2.1/bin:-9999 OMPI_DIR=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb OLCF_FAMILY_COMPILER_VERSION=6.4.0 BASH_FUNC_ml()=() { eval $($LMOD_DIR/ml_cmd "$@") } PAMI_IBV_QP_SERVICE_LEVEL=8 MPI_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb WORLDWORK=/gpfs/alpine/world-shared LMOD_sys=Linux LOADEDMODULES=hsi/5.0.2.p5:xalt/1.2.1:lsf-tools/2.0:darshan-runtime/3.1.7:DefApps:cmake/3.18.2:gcc/6.4.0:spectrum-mpi/10.3.1.2-20200121:netlib-lapack/3.8.0:forge/20.0.1:cuda/10.1.243 LMOD_ROOT=/sw/summit/lmod HISTCONTROL=ignoredups PWD=/gpfs/alpine/csc314/scratch/adams/petsc _ModuleTable004_=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 BINARY_TYPE_HPC= OLCF_HSI_ROOT=/sw/sources/hpss Files in path provided by default path /sw/sources/lsf-tools/2.0/summit/bin: bsub bjob showusage test_bsub /sw/summit/xalt/1.2.1/bin: jsrun ld xalt_helper_functions.sh /sw/summit/cuda/10.1.243/bin: cuobjdump cuda-gdb cuda-gdbserver gpu-library-advisor cuda-memcheck nsight nsight_ee_plugins_manage.sh nv-nsight-cu-cli bin2c crt cudafe++ fatbinary nvcc nvcc.profile nvlink ptxas nvdisasm nvprof nvprune computeprof nvvp cuda-install-samples-10.1.sh /sw/summit/forge/20.0.1/bin: ddt-debugger-mps ddt ddt-debugger allinea-client ddt-mpirun forge-probe forge make-profiler-libraries ddt-debugger-ll map ddt-client /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin: shmemrun profile2mat.pl oshrun oshmem_info orterun orted orte-server orte-info orte-clean ompi_info ompi-server ompi-clean mpitool mpirun mpijob mpiexec jumpshot get_nl_setting efix alias.pl aggregate_profile.pl stock shmemfort shmemcxx shmemcc shmemc++ shmemCC oshfort oshcxx oshcc oshc++ oshCC ortecc opal_wrapper mpixlf mpixlc mpixlC mpipgifort mpipgicc mpipgic++ mpifort mpif90 mpif77 mpicxx mpicc mpic++ mpiCC mpip-jsrun /sw/summit/gcc/6.4.0/bin: g++ c++ powerpc64le-none-linux-gnu-g++ powerpc64le-none-linux-gnu-c++ gfortran powerpc64le-none-linux-gnu-gfortran gcj powerpc64le-none-linux-gnu-gcj jcf-dump gcov gcov-tool gcov-dump cpp gcc powerpc64le-none-linux-gnu-gcc-6.4.0 gcc-ar powerpc64le-none-linux-gnu-gcc powerpc64le-none-linux-gnu-gcc-ar gcc-nm powerpc64le-none-linux-gnu-gcc-nm gcc-ranlib powerpc64le-none-linux-gnu-gcc-ranlib jv-convert gij grmic grmiregistry gcj-dbtool gappletviewer gjarsigner gkeytool gjar gcjh gjavah gnative2ascii gorbd grmid gserialver gtnameserv gc-analyze rebuild-gcj-db aot-compile /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin: ccmake cmake ctest cpack /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin: darshan-mk-log-dirs.pl darshan-gen-cc.pl darshan-gen-cxx.pl darshan-gen-fortran.pl darshan-config /sw/sources/hpss/bin: htar 5.0.2.9 6.0.0.11 5.0.2.11 hsi 6.2.0.1 6.3 6.3.1 TA_Status test_TA /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc: esub esub.poe pim lsf_daemons rla elim.jsdl named esub.tv esub.openmp esub.mvapich esub.dprov sbatchd esub.bproc esub.openmpi esub.oldtvpoe esub.mpichp4 elim.frequency esub.tvlammpi esub.oldpoe lim esub.ls_dyna esub.tvmpich_gm esub.fluent nios esub.gold esub.mpich_gm esub.pvm esub.intelmpi esub.mpich_mx eauth.krb5 res tmp.elim.sa eauth esub.tvpoe mesub esub.mpich2 melim esub.lammpi /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin: brsvjob lspasswd bmgroup bpost btop bclusters lsplace bjdepinfo lsreghost brsvs bparams bgadd lsrun lsload breconfig lsfrestart bconf bmod bsub lsunlockhost bmodify bread bacct lsfrsv lsgrun bslots bapp bjobs lsmail lsfstartup lsmake4 lslockhost lsfshutdown bpeek lsrun.sh lslogin bimages bchkpnt bwait lsfhadoop.sh bsla brsvmod lsrtasks blimits busers bresources bqueues brequeue bmg lsrcp lseligible lshosts lsloadadj breboot lsacct lsclusters bugroup lsltasks lsadmin bstatus bgbroker bgdel bentags lsportcheck brsvsub lsf-start-spark.sh bqc bhpart lsf-spark-shell.sh lsmakerm lsf-spark-submit.sh brestart bswitch bjgroup lsreconfig lammpirun_wrapper lsf-stop-spark.sh badmin bbot bstop lsinfo brun bhist bhosts bgmod brsvadd bkill brlainfo brsvdel xagent bresize bmig lsmon lsid bgpinfo lsmake bresume blaunch lsacctmrg /opt/ibm/csm/bin: csm_bb_vg_create csm_node_find_job csm_cluster_query_state csm_allocation_create csm_ib_cable_update csm_allocation_query_active_all csm_bb_lv_delete csm_allocation_update_state csm_switch_attributes_update csm_soft_failure_recovery csm_diag_run_query csm_allocation_step_begin csm_bb_vg_delete csm_node_attributes_query_history csm_allocation_query_details csm_node_attributes_query_details csm_diag_run_query_details csm_ras_event_create csm_diag_run_begin csm_node_resources_query_all csm_allocation_query csm_ras_event_query_allocation csm_switch_attributes_query csm_node_attributes_query csm_switch_attributes_query_details csm_infrastructure_health_check csm_node_attributes_update csm_ras_msg_type_create csm_ras_msg_type_delete csm_ras_msg_type_query csm_node_query_state_history csm_switch_attributes_query_history csm_allocation_step_query_active_all csm_bb_lv_create csm_node_resources_query csm_allocation_delete csm_ras_event_query csm_allocation_resources_query csm_diag_result_create csm_node_delete csm_ras_msg_type_update csm_bb_vg_query csm_ib_cable_query_history csm_diag_run_end csm_allocation_step_query csm_allocation_step_query_details csm_allocation_update_history csm_allocation_step_end csm_ib_cable_query csm_jsrun_cmd csm_bb_lv_query /usr/local/bin: /usr/bin: sview strigger sstat sshare srun sreport squeue sprio smap sinfo sgather sdiag scontrol scancel sbcast sbatch sattach salloc sacctmgr sacct jobsub jobstat ctags diffstat rpmsign swig ccache-swig ocs cscope-indexer cscope doxygen unwrapdiff splitdiff rediff recountdiff lsdiff interdiff grepdiff flipdiff fixcvsdiff filterdiff espdiff editdiff dehtmldiff combinediff yacc byacc indent rlog rcsmerge rcsfreeze rcsdiff rcsclean rcs merge ident co ci svnversion svnsync svnserve svnrdump svnlook svndumpfilter svnadmin svn intltoolize intltool-update intltool-prepare intltool-merge intltool-extract gettextize autopoint stap-report stapsh staprun stap-merge stap-prep stap screen rhn_register whiptail subscription-manager rhsmcertd rhsm-debug rct consolehelper pyinotify easy_install-2.7 easy_install snmpwalk snmpvacm snmpusm snmptrap snmptranslate snmptls snmptest snmptable snmpstatus snmpset snmpnetstat snmpinform snmpgetnext snmpget snmpdf snmpdelta snmpbulkwalk snmpbulkget encode_keychange chardetect atopsar atopd atopconvert atop abrt-dump-oops abrt-action-save-kernel-data abrt-action-analyze-oops abrt-action-trim-files abrt-action-perform-ccpp-analysis abrt-action-list-dsos abrt-action-install-debuginfo abrt-action-generate-core-backtrace abrt-action-generate-backtrace abrt-action-analyze-vulnerability abrt-action-analyze-core abrt-action-analyze-ccpp-local abrt-action-analyze-c abrt-action-analyze-backtrace abrt-watch-log abrt-handle-upload abrt-action-save-package-data abrt-action-notify abrt-action-analyze-xorg reporter-ureport reporter-rhtsupport libtar satyr git git-receive-pack git-upload-archive git-upload-pack git-shell lex tset pk12util as lpr.cups speaker-test manpath hwloc-gather-topology hwloc-calc rev snmpconf sctp_darn trust nm fc-pattern ucs2any zforce groups gunzip tracepath rdma_xclient unalias db_upgrade dbus-uuidgen uuidgen uname df fc-match evim schemagen sessreg rdoc gdbus-codegen perl perl5.16.3 egrep mlxcables recode-sr-latin pkcheck GET rvim addr2line gsdj500 rpmbuild amixer unexpand ypchsh yppasswd ypchfn install cancel.cups msggrep mwm gcc-nm remunge ibgenperm thumbpdf nsenter clean-binary-files httpcfg mlnx_dump_parser ghci autoexpect ntpstat texluac dtestsrq lz4cat pkttyagent python2 pkla-admin-identities hpc tail size fc-query mkluatexfontdb dbus-cleanup-sockets nisdomainname ldapurl xsd startx crash mcdiff make gslp mktexfmt pmafm xdg-desktop-icon ldappasswd csh printenv vncconfig wqdump_ext gendiff mst_cable X mstvpd zmore db_hotbackup signver systemctl amsvis tbl xmessage servertool sn embedspu rview nohup grops geoipupdate xfd rm infotocap pwscore eu-objdump mysql mailq.postfix ptx systemd-loginctl mstop rxe_cfg ar ccrewrite diff-jars python pmsocks migspeed xmbind objcopy alias dos2unix ca-legacy tclsh ofed_rpm_info hwloc-assembler-remote vimtutor lprm pygtk-demo jjs prtstat seq col pdcp eu-strip ib_acme resourcedump dirname fc-cache-64 lesskey date basename grep geoiplookup6 ssh-copy-id xterm svcutil libpng-config dvilualatex db_load systemd-notify dracut texconfig haddock xrandr umount xdg-mime prlimit ucx_info infokey pstree.x11 mono-test-install write geqn xdg-screensaver glib-mkenums sudoedit mst ghc-pkg-7.6.3 wall dgawk ibv_polldcinfo ppc64le-redhat-linux-gcc gcc xzcat simpdftex cvsbug pdflatex mlxburn ping column fc-cache pinentry-curses pmlogextract scp stdbuf mlxcables_ext renice file raw_ethernet_bw msguniq appletviewer pdf2dsc mlxpci dig gem coredumpctl eu-size conjure mlnx_conf_mgr.sh alsaunmute command cd sha1sum xsltproc hp2ps erb update-desktop-database gtk-update-icon-cache crontab icewm mktexmf whoami ttmkfdir uxterm ucx_perftest ibcongest mlnx_perf funzip ghc pkg-config nvidia-persistenced unzipsfx bootctl fc-conflist pango-querymodules-64 splain curl arch xinit pfbtopfa mozroots setsid setterm gr2fonttest wqdump gzexe gtk-launch compare aseqdump cc nvidia-debugdump icesh udevadm lc icehelp gvimdiff taskset xml2-config pkill bzmore mogrify systemd-analyze mkdir lpq.cups libpng15-config mc repstopdf ld ld.bfd systemd-sysv-convert nproc dbpmda cksum psed s2p msghack tabs systemd-coredumpctl jmap libtoolize etags.emacs gtester pmie fg ps2pdfwr peekfd ib_atomic_bw preconv dtestx aria_dump_log gpg-error pmtrace allec post-grohtml tree net-snmp-create-v3-user bunzip2 zcat xzless lscpu xzmore udaddy alsamixer find2perl dtestcm iconv rpm2cpio desktop-file-edit ps2pdf13 ldapexop hwloc-assembler rpmquery ibv_umr chown pdsh gcc-ar pdb2mdb unshare db_replicate nsupdate cpio xmvn-builddep comm dbus-monitor automake-1.13 automake eu-stack runghc-7.6.3 xgettext chsh eqn gdb lualatex cpupower build-jar-repository gacutil2 gawk rftp kpsewhere c99 nvidia-smi reset xdg-open zip split mlx_fpga_ext catchsegv ghc-7.6.3 keytool aria_chk mlxreg mstregdump alsaucm mlxlink rename chktrust true db_recover mktexlsr xpr skill otflist gfortran gtroff uil jvmjar zgrep elfedit xclipboard passwd prove eu-nm openssl su kibitz kpsestat pgrep printf gtbl ib_read_lat zipdetails gtar jarsigner mysql_find_rows fold gconf-merge-tree munge ln tty uuclient stat chfn find-jar wish pmdiff mkocp lchsh jconsole luit diff rpmdb gcore rsync fc-list dmesg libtool mkfontscale zsoelim mstmcra pod2usage xjc uptime dump2slvl.pl ldapwhoami testrb alsatplg setarch dbus-test-tool msgfmt alsa-delay gview texconfig-dialog ps2pdf14 cairo-sphinx sctp_test ps2epsi pmlogconf dwz amidi updmap-sys compile_et man cmp hostnamectl dd tmon vdir pldd sctp_status iceauth getfacl xrdb runhaskell-ghc udpong hwloc-distances sh db_stat ib_write_bw fmt fc-validate mcs ibv_cc_pingpong base64 ibv_devinfo ibv_xsrq_pingpong mlxreg_ext sqlite3 ps2ps2 dapltest tar head ps2pdf ri serialver script pstree msgcomm finger fallocate xzdec whatis gencat perlthanks perlbug xconsole xclock wsdl mlxtrace aclocal aclocal-1.13 red readlink unix2mac vim zegrep certutil hwloc-info xinput hwloc-distrib gzip ypcat localedef emacs pmlogsummary mlnx_interface_mgr.sh mysql_config gpgsplit zipinfo unzip updatedb idn systemd-run pwd mailx xzdiff db_dump185 wish8.5 ibv_devices ls mcedit iptables-xml db_dump unlz4 xdg-icon-resource arecord kernel-install otftobdf sqlmetal mysqlslap lp dbus-run-session xcursorgen mremote gsbj ldapadd unpigz pigz ed gss-client ibdiagm.sh m4 systemd-path kpsetool cal raw_ethernet_burst_lat mpi-selector lprsetup.sh rvi mono xrefresh zipsplit lp.cups batch mysqladmin ib_write_lat ldapcompare lprm.cups which msginit oldfind toe unlink lz4c ppc64le-redhat-linux-g++ c++ g++ ppc64le-redhat-linux-c++ montage ghostscript diff3 run-singularity dcgmi ibdiagpath pmfind free ghc-doc-index gpg-zip tcsh mconfig gpgv2 jdb pmpython allneeded icewmhint pinky rmid ebrowse lsblk xmlwf memhog ruby eu-findtextrel dislocate vncviewer less ibdev2netdev lsmem systemd-ask-password kpsereadlink lstopo-no-graphics bzcat python2-config cat ngettext gtk-query-immodules-3.0-64 apropos dimax_init icewmtray linux64 mstcongestion gdb-add-index who dviluatex xwud pstack ldapmodrdn bzgrep ucx_read_profile ionice bison rmic mktexpk ppc32 ranlib jhat slabtop x11perf systemd-cgtop wait catman xauth systemd-cat cancel bg env xkill pmlc numactl tnameserv pmdbg at convert Xvnc flint_ext strings soapsuds gstack msgcmp mkofm ssh-keygen sdiff HEAD ib_send_lat mkfontdir pgawk mysqlbinlog lppasswd dbus-daemon emacs-24.3 nroff locate setup-nsssysinit.sh igawk mlx_fs_dump gsdj tic lsinitrd weather gcov mono-boehm patch sudo ib_read_bw info dump2psl.pl xsetmode jrunscript kdumpctl lslocks gnroff shuf vmstat latex lslogins lua flex++ ssh-keyscan mlxtrace_ext msgattrib signtool rpmverify getent pmieconf ssh-agent xdg-desktop-menu ibdmchk ibnetsplit link gpg-agent pmlogcheck mlxlink_ext dbus-update-activation-environment bc nice raw mlxgearbox pmevent riostream wftopfa aserver mget_temp javadoc unxz ib_send_bw cpp desktop-file-install checksctp ucmatose gpg jsadebugd kpsewhich aria_read_log whereis systemd-tty-ask-password-agent pmerr mysqldump mstfwtrace java dvi2fax ibv_intf tzselect ibv_dctgt fmtutil gsoelim chmem ssh mstmtserver wsdl2 pmdate modutil vncserver pmval pmstore systemd-stdio-bridge paste xdg-email POST pod2text gacutil setpriv mandb lsattr tracepath6 xwd rdma_server desktop-file-validate mget_temp_ext nvidia-modprobe truncate numfmt mlnx_qos xbiff ppc64 lwp-request xgamma rmail mkfifo luac hsc2hs-ghc texconfig-sys systemd-detect-virt secon rebuild-jar-repository sim_client h2ph pminfo f95 bashbug-64 mktemp gneqn sum unbuffer newgrp mlxfwmanager allcm usleep etags ikdasm mac2unix sha384sum wsimport hwloc-patch ofed_info cvtsudoers krb5-config mstfwreset pdfetex dir sprof run_perftest_multi_devices cp ypwhich xset jstack sxpm pmclient chattr run-parts mstconfig gapplication extcheck mlxvpd ghc-pkg eu-elfcompress fribidi fc x11perfcomp logger watchgnupg dtest xeyes csslint-0.6 timeout makedb ibdump chcon aconnect ib_atomic_lat stream icewm-xdg-menu runhaskell msgunfmt lexgrog lsipc expect bashbug xz fmtutil-sys gettext.sh glib-compile-schemas pmstat javah ipcmk pstruct c2ph mtserver luatex cert-sync mlxmdio rdma_xserver pmlogger mountpoint eu-ranlib rmdir hostname pmap ipcalc zipnote lwp-dump pdf2ps gpasswd animate zsh python-config db_deadlock vpi_tcpdump jcmd migratepages resize showrgb captoinfo pax rstream jps ps systemd-cgls db_tuner systemd-inhibit [ ul snice rpmspec wc pod2html timed-read ibdiagnet lwp-download haddock-ghc-7.6.3 cmsutil updmap xvidtune last mlxprivhost top pmdumplog scriptreplay urlgrabber mstprivhost quotasync chgrp touch neqn fc-cat xmag msgen pack200 mount md5sum sudoreplay ps2ps gmake autom4te dircolors sha256sum pre-grohtml tsort getconf eu-elflint texlua db_log_verify fc-scan getopt pmie2col vi tload ibv_task_pingpong atrm gettext dc db_archive rdma_client xorg-x11-fonts-update-dirs fonttosfnt etex pf2afm aplaymidi mcookie jar nslookup setxkbmap ipmitool mlxdump hwloc-ls realpath ps2ascii ksh mlxmcg pdftex lpstat read dbus-send perldoc pkcs1-conv jdeps jstatd kpsexpand lwp-mirror mailq gnuplot kpsepath sort grep-changelog fgrep eu-readelf numastat shcomp sync flock timed-run cvt rpm composite autoheader setfacl db_printlog db_verify zcmp expand kpseaccess xmllint csplit bdftopcf ypdomainname soelim podselect kmod mono-heapviz alsaloop pmlogmv cut nvidia-bug-report.sh xzgrep pinentry lpstat.cups eu-ar dvired nettle-lfib-stream jinfo c89 mono-service runghc hwloc-bind gtf journalctl dbus-binding-tool check-binary-files hwloc-compress-dir icewm-set-gnomewm perf lpoptions msgconv printafm lpr tput keyctl ex bzless sha512sum withsctp ssh-add mesg findmnt gpgconf host agentxtrap umask raw_ethernet_fs_rate fipshmac gdbus mono-sgen-gdb.py gtester-report ibv_dcini lesspipe.sh mysqlshow piconv xload gtk-query-immodules-2.0-64 rmail.postfix dshbak localectl ipcs gex locale db_checkpoint i2c ldd gs arecordmidi msql2mysql autoupdate find chmod amsstat eu-addr2line rpcgen c++filt sndfile-resample hwloc-ps look ibdmtr genpmda curl-config pmprobe rksh pod2man xzcmp mlxfwreset zipgrep utmpdump more gdk-pixbuf-query-loaders-64 tc_wrap.py rmiregistry gpg-connect-agent xfontsel gsnd xkbcomp mprof-report mktextfm namei gsettings numademo mpi-selector-menu view icewmbg gcc-ranlib hesinfo cvs pckt_drop gnuplot-wx objdump mckey chrt unix-lpr.sh nail mlnx_qcn sss_ssh_knownhostsproxy ibv_uc_pingpong envsubst ghci-7.6.3 mkinitrd autoconf eu-unstrip mysqlcheck ipcrm pango-list lsns loginctl otfdump hwloc-diff mysql_waitpid uniq nvidia-xconfig gvimtutor setup-nsssysinit dvipdf wdctl tee killall cabal mcview ldapsearch sg flex runcon xzegrep gpg2 identify tac colcrt pmgenmap font2c nvidia-cuda-mps-server unpack200 readelf mlxi2c hexdump ssltap ibtopodiff cxpm msgcat update-mime-database singularity pmloglabel mono-sgen xcutsel irb pmjson login factor linux32 machinectl lsb_release vimx gio wget troff busctl lastb pmclient_fg native2ascii mono-service2 ibv_srq_pingpong mknod strace sexp-conv time gio-querymodules-64 Mail du dconf mlnx_get_vfs.pl domainname alsabat systemd-tmpfiles strace-log-merge ibv_rc_pingpong python2.7 sleep cmtime pwdx lpunlock eject mdevices_info ifnames sha224sum koi8rxterm sed getopts xlogo mlxuptime newaliases.postfix aseqnet systemd-firstboot xargs nettle-hash python2.7-config ncursesw5-config pcre-config qperf eu-make-debug-archive newaliases chage build-classpath mysqlaccess bzdiff isosize mstmwrite expr pwmake systemd-escape ncurses5-config xsetroot ibnlparse lstopo lessecho autoreconf gslj orbd clear gctags vncpasswd icewm-session atq mysqlimport rpmkeys xxd xhost ibv_asyncwatch wsgen sotruss mstflint run_perftest_loopback watch net-snmp-config msgfilter systemd-hwdb lastlog slogin gconftool-2 ldapdelete test mst_ib_add pkexec zipcloak rsyslog-recover-qi.pl pkaction unix2dos groff shred itrace xmlcatalog texhash systemd-machine-id-setup flint ibdiagnet_csv2xml.py iecset hwloc-annotate eps2eps autoscan grotty colrm bash glib-gettextize yes lz4 epstopdf gpgparsemail spax pr kill bzcmp mlxdump_ext ypmatch ibv_ud_pingpong aria_ftdump w logname ksh93 od xmodmap gpic pmlogsize p11-kit systemd-nspawn m17n-conv bzip2 timedatectl gresource rping infocmp unmunge nl users minit idlj xstdcmap msgmerge a2p csharp mft_uninstall.sh testgdbm gdk-pixbuf-thumbnailer hsc2hs lpq glib-genmarshal tailf quota hca_self_test.ofed id stty update-ca-trust mlxconfig setreg xzfgrep mv fipscheck ftp-rfc disco sqlsharp join xsetpointer ppc rlogin-cwd vimdiff lchfn tr chacl echo netstat texlinks pkla-check-authorization display strip xdg-settings rpdcp mstdump mkpasswd ping6 mlxphyburn pydoc ps2pdf12 jstat gpgv eu-strings pphs eu-elfcmp jobs zfgrep systemd-delta update-gtk-immodules glib-compile-resources gsettings-data-convert pic mlx_fpga dotlockfile gobject-query redhat_lsb_init Xorg import sftp emacsclient raw_ethernet_lat zless aria_pack msgexec false crlutil nvidia-cuda-mps-control oclock dnsdomainname javac pcp mail fwtrace xdpr awk tclsh8.5 gprof xkibitz my_print_defaults rcopy passmass pod2latex freetype-config bzip2recover bdftruncate x0vncserver yum abs2rel geoiplookup pcp2csv build-classpath-directory otfview znew mstmread aplay gvim nvvs ldapmodify nv-hostengine pl2pm javap pango-view ibsim sss_ssh_authorizedkeys hostid create-jar-links mcra zdiff pathchk /usr/local/sbin: /usr/sbin: rhnsd rhn_check spacewalk-channel rhnreg_ks rhn_register rhn-channel rhn-profile-sync subscription-manager userhelper pifconfig pethtool virt-what abrt-install-ccpp-hook abrt-dbus abrt-configuration abrtd abrt-server abrt-auto-reporting vgcfgrestore selabel_digest resize2fs luserdel bootlist fdisk thin_trim e4defrag tracepath pwhistory_helper mkdumprd mke2fs mkfs.ext2 mkfs.ext3 mkfs.ext4 badblocks mii-diag lpc lgroupmod rpc.statd lsdevinfo ibfindnodesusing.pl ifup alsa-info ibdiscover.pl load_policy rtcwake thin_repair usermod xfs_freeze lvs xfs_mdrestore plipconfig groupmod fsck.xfs lsvpd unix_update readprofile vgreduce losetup sshd-keygen update-alternatives rtas_event_decode selabel_lookup_best_match cracklib-check ntptime partx agetty pvdisplay vmcore-dmesg show_irq_affinity_hints.sh mlnx_net_rules kexec cracklib-unpacker lsprop thin_dump alternatives vendor_pre_uninstall.sh yppoll swaplabel lvchange blockdev ibdatacounts dracut useradd zdump alsa-info.sh lparstat ctrlaltdel smpdump ss swapoff swapon zic ipmaddr sys-unconfig sldd.sh iconvconfig.ppc64le iconvconfig tcsd ibhosts dmsetup lid chcpu cache_dump ibchecknode ibroute depmod vgremove pseries_platform nvme getpcaps ppp-watch lscfg cache_repair xfs_logprint postlock serv_config dumpe2fs nvram udevadm parted lsmod tc ntpdate sestatus fsck.minix rpcinfo pmc groupmems srp_daemon.sh iptables-restore pwunconv routel postqueue ls-vdev lpasswd sysctl e2freefrag dmstats capsh sendmail xfs_db pam_timestamp_check chpasswd lvdisplay hwstamp_ctl lnewusers zramctl yptest quotacheck ibdatacounters lvcreate mkdict vgmknodes iptables-save fixfiles set_irq_affinity_cpulist.sh lspci xtables-multi blkdeactivate postlog fsck lsslot xfs_quota rdisc update_flash_nv srp_daemon bridge saquery ibswitches addpart smpquery sss_cache clockdiff ntpdc ypset runlevel sssd build-locale-archive ntpd nfsidmap ipmievd atrun postcat odp_stat.sh lvconvert e2fsck fsck.ext2 fsck.ext3 fsck.ext4 rtstat ibprintrt.pl ifconfig era_dump xfs_growfs sminfo lvmsadc ibclearcounters dmfilemapd restorecon thin_ls ldattach grpconv vendor_post_uninstall.sh ntpq nvsetenv era_check connectx_port_config postconf delpart try-from vpdupdate era_restore avcstat munged snmpd mountstats mklost+found lvmsar ls-veth snmptrapd route ibsrpdm ibstat phc2sys lvresize cracklib-packer new-kernel-pkg fsck.nfs irqbalance logrotate xfs_rtcp rpc.rquotad ibcacheedit genhomedircon genl exportfs xfs_bmap grpck alsactl cache_writeback newusers selabel_partial_match makedumpfile show_gids mlnx_affinity ofed_uninstall.sh vgexport lvmdump nslcd pvresize partprobe set_irq_affinity_bynode.sh show_irq_affinity.sh dump_fts errinjct hardlink matchpathcon fdformat vgextend fsfreeze ofpathname pwck dhclient postdrop sendmail.postfix vgcfgbackup sulogin hack-coff lpc.cups xfs_info ypbind nameif nstat mkfs.cramfs sim_server activate_firmware nfsstat opensm gssproxy ibaddr mkfs.xfs groupadd halt osmtest lvmpolld lsmcode pvs lvremove start-statd debugfs setpci selinuxexeccon ibportstate rtmon ibcheckerrors vgimportclone e2label tune2fs rtas_dump postfix lnstat dump_mfts.sh thin_restore check_lft_balance.pl ibidsverify.pl cma_roce_tos selabel_lookup ip6tables-save rmmod cache_metadata_size nsm run_srp_daemon runuser xfs_metadump getcap sefcontext_compile ip iptables glibc_post_upgrade.ppc64le fsadm iblinkinfo.pl ibqueryerrors.pl setfiles sys_ident dhclient-script tracepath6 findfs getsebool cbq e2image blkdiscard uuserver ifcfg shutdown smtp-source install-info set_nodedesc.sh xfs_repair rsyslogd rpcdebug lvm mkhomedir_helper pvscan logsave pwconv unsquashfs ntp-keygen e2undo blkmapd vgscan osd_login umount.nfs ibcheckerrs rpc.nfsd iblinkinfo ibtracert cfdisk common_irq_affinity.sh modinfo sasldblistusers2 rtpr selinuxconlist wrapper blkid ibclearerrors lvmconf xqmstats vgsplit postsuper thin_check filefrag adduser redhat_lsb_trigger.ppc64le dump_lfts.sh drmgr cache_check crond pvchange vendstat setenforce addgnupghome tcpdmatch reboot vipw rpc.gssd cracklib-format perfquery sln pivot_root create-cracklib-dict quotaon groupdel ptp4l mkfs xfs_estimate dmeventd gss-server usernetctl show_counters xfs_ncheck vgchange grpunconv quotastats iptunnel dkms resizepart sysctl_perf_tuning xfs_mkfile repquota ip6tables-restore lusermod wipefs sshd ifdown cache_restore arp pvremove clock tickadj ldconfig selinuxdefcon lvreduce vigr quot vgdisplay lchage arping ibacm ibcheckportstate smparquery insmod addnote lvmetad ibprintca.pl switch_root hwclock kpartx ifstat sysinfo-snapshot.py setsebool edquota killall5 pidof anacron service sfdisk vgimport vgrename sm-notify lvmdiskscan lvscan selinuxenabled nologin atd accessdb ibcheckstate userdel lsvio ibnodes weak-modules quotaoff setquota era_invalidate automount xfs_copy sosreport consoletype phc_ctl safe_finger ppc64_cpu mlnx_eswitch_set uesensor rpc.mountd ls-vscsi ibsysstat modprobe ibstatus lgroupadd vgs rtacct pdata_tools telinit setup_mr_cache.sh poweroff lsof slattach visudo ibcheckportwidth update-pciids nscd update_flash smtp-sink mkswap sushell lvmconfig mktree xfs_admin ctstat lvrename ibmirror pam_tally2 chkconfig pam_console_apply xfs_io ib2ib_setup nfsdcltrack mksquashfs umount.nfs4 arpd rtas_ibm_get_vpd setcap rtas_dbg chroot ibqueryerrors grubby timemaster ibchecknet installkernel vgmerge rpc.idmapd create-munge-key routef mount.nfs pvmove ip6tables postmulti ibnetdiscover key.dns_resolver request-key alsabat-test.sh genhostid ibswportwatch.pl postmap init ibprintswitch.pl ether-wake ifenslave selinux_restorecon fstrim xfs_fsr packer lgroupdel vgcreate mount.nfs4 ethtool fsck.cramfs postalias lvextend vgconvert saslpasswd2 netreport mkfs.minix cma_roce_mode ibcheckwidth thin_metadata_size faillock thin_rmap ibcheckport pvck postkick ibrouters pvcreate tcpd vgck rpcbind ping6 opal-prd thin_delta mii-tool showmount ibccquery devlink set_irq_affinity.sh ibping nfsiostat mlnx_tune hvcsadmin unix_chkpwd getenforce luseradd set_poweron_time semodule convertquota applygnupgdefaults fuser ibccconfig compat_gid_gen /opt/ibm/flightlog/bin: decoder /opt/ibutils/bin: ibmsquit ibis dump2slvl.pl ibdiagpath IBMgtSim dump2psl.pl ibdmchk mkSimNodeDir ibdiagui ibdiagnet RunSimTest ibdmtr ibtopodiff ibdmsh ibnlparse ibmssh /opt/ibm/spectrum_mpi/jsm_pmix/bin: jsrun jswait jskill query_env export_slurm_env jsm_simulator js_task_info admin jsproxy jslist export_smpi_env jsm stock /opt/puppetlabs/bin: hiera facter puppet facter-ng.bat /usr/lpp/mmfs/bin: mmtrace mmsysmon.py mmnfsfuncs mmcesnfsmonitor mmjob mmdelcallback tsdf tschfileset tslsdisk tslspolicy tslsfs tsdelsnapshot tslsfileset tsnsdaccess tscrsnapshot tslspool tssnapdir tsedquota tsusercmd tslssnapshot tsstatus mmcrnsd tsgetscsiinfo mmqosnice mmsetquota mmdelfileset tsprpreemptabort cleanupkeystonedb mmsdrfsdef.Linux mmcesuserauthcrservice mmdumpfilocks tschdisk tsaddpdisk tsctl tskafkaauth tsdbfs tscheckquota tsfsctl tsrpldisk tschpdisk tsrecgroupserver tscmd tsreclaimspace tscrrecgroup tschstoragepool tsrestripefs tsdefragfs tsfileid tsdsh tsdeldisk tsquotaon tschfs tsdefedquota tsunmount tsdelpdisk tsressnapshot tscrvdisk tsquotaoff tsexpelnode tslsvdisk tscrfs tschmgr tslsrecgroup tslsrecoverygroupevents tsdelvdisk tsnsddiscover tsdefquotaoff tscrfileset tsdelfs tsdbvdisk tsdelfileset tsadddisk tscachectl tsdefquotaon tschcarrier tsauth tslsqos tslspdisk tsnsdrediscover tsremount tsdelrecgroup tschpool tsrepquota tschqos tschrecgroup tsfsck tsdiag tssbrff mmlsfileset mmexectsmcmd mmgetkafkaspecinfo mmfs mmchconfig ces.snap.py mmperfmon tsgetacl clstrwatchcallbacks mmcessmblsconfig tslsattr mmcesmonitord .links mmnfsgrace mmhelp-apolicy mmpmon mmcesnfsdelexport mmchpolicy gui.snap.py tspcache perfmon.snap.py mmsdrquerydef mmlsqos mmxargs tschattr mmclidecode clstrwatchconsumermanager mmfsctl mmpsnap mmccrnv perf.snap.py mmcespnfsip mmnfsnodeback tsimgrestore mmcesuserauthckservice mmchnodeclass pymmcesnfslsexport.py mmdelacl mmumount mmcrnodeclass mmsysmonc tspcacheevict mmexecvfile sshwrap mmgetifconf mmfs-ppc64-rh4 sysmon.snap.py mmimgrestore mmcesobjaccesslinkfset mmchecksubsys mmcesop tspmon mmdefedquota mmdelsnapshot mmreclaimspace mmsysmoncontrol tsspectrumdiscover mmyfields mmchnode mmrestorefs mmcallhome mmexportfs mmcesnfsloadexport tslspool34 mmnfsmonitor mmsnmpagentd30 tsfindinode mmfsfuncs.Linux mmdumpperfdata mmcesobjcrbase mmdsh objmetric_count.py mmauditmount mmcessmblsexport mmdevdiscover mmlsnode mmautoload mmcesnfscrexport mmchnsd mmfileid mmcesnfsfuncs mmcesrecovernode mmsklmconfig mmlsfs mmcollectdebugdata tseditacl tsbuhelper tslinkfileset tspreparedisk mmrpldisk mmdelnode mmceslog mmcrfsc mmcesblockfuncs mmgensymtable mmfsd mmnfsinstall mmdspmsg mmclone mmchfs mmlsdisk mmnfstakeover tsyselect mmnfsup mmcessmbcrexport tsaddrmap mmnetverify mmchpool msgqueue.snap.py mmcesobjlscfg tsrestorefileset mmbuildgpl mmsmbman tsfindname mmcesloadmonitor mmcesobjaccess mmaddcallback mmcesobjpolicyfuncs mmcessmbdelexport msgqueueDaemonManager core.snap.py tsgskkm mmauth mmedquota mmshutdown tsdbmemleakparse mmadquery mmsdrcli mmccr mmcesobjchstoragepolicy mmcesnfschcfg tswatchmonitor mmmigratefs mmputacl mmlscluster commonsnap.py mmcesservice mmadddisk tslsmgr tssbrindex mmafmlocal mmlsperfdata mmnfsuninstall mmcmi mmcesobjs3 tspcachescan mmlsnsd mmchcluster mmunmount mmnfsquorumloss mmcesnetdeladdress mmlsquota mmces pymmcesnfsfuncs.py tsputacl mmchqos tsprshowfence gpfsrunlevel mmimgbackup mmsdrrestore tsqosnice mmsdrserv mmmsgqueue mmcesmmcdelexport mmlinkfileset mmrestoreconfig mmdelnodeclass mmsmbfuncs lxtrace-4.14.0-115.21.2.el7a.ppc64le mmcesobjcfgman mmfixcfg mmcesnfslsexport tsdbmemleak mmaudit mmcesnfslscfg mmsmbsupportedoptions mmafmconfig mmlscallback mmlsmgr tsbackup mmcesminfuncs mmfsmount mmcesmmcchexport tsrestripefile kdump mmimportfs mmcesobjcrring mmnfs mmcommon mmcesnetmvaddress mmsnmpagentd mmcesobjfuncs gui.callhome.py tsbackup33 lxtrace mmsdrfsdef mmsmb mmobj tsprclear mmceshdfsfuncs mmcesnetworkmonitor tspcacheutil mmqos mmlspolicy mmrestripefs mmcessmbfuncs mmaddnode mmblock mmcrfs mmmount tsprreadres tssklmconfig mmnsddiscover mmprotocoltrace mmglobfuncs tsprreadkeys mmnfsdown gpfs.snap object.snap.py mmcesnetaddaddress mmcesobjchcfg mmrsh mmcesobjmr mmeditacl auditConsumerManager mmlsconfig mmsync mmgetacl mmcesuserauthrmservice mmhealth tsdelacl mmremote mmpercentencode mmcloudfuncs daemonize mmcesnfschexport tsclone callhome.snap.py clstrwatchreplaymanager tsnetverify mmstartup mmcachectl mmgskkm mmdefragfs mmsnapdir tsapolicy mmrcmd mmexpelnode mmsdrquery ece.callhome.py mmchdisk mmcesnetdown mmlslicense mmrestripefile mmcrfileset mmnfscleanup kdump-4.14.0-115.21.2.el7a.ppc64le mmlogmsg mmcessmbexportacl mmchlicense mmsetrcmd tsclwatchrules mmdynamicmap tssetquota tsprreserve wftopics mmvaryonvg mmsnmpagentd10 mmbackupconfig mmdefquotaon mmlsattr mmcesfuncs mmfsadm mmcesmmccrexport runmmfs mmafmcmd ccrrestore mmunlinkfileset basicsnap.py mmafmhomeconfig auth.snap.py fab3.snap.py mmuserauth object.callhome.py mmlogsort mmdf mmcesobjcrstoragepolicy mmdefquotaoff mmtracectl mmdump tsprquery mmfsenv mmfsfuncs mmrepquota mmcesdr mmcesnode tslsquota mmdsm mmdelnsd mmnfsinit mmcrsnapshot mmlockf mmcesauthfuncs network.callhome.py mmglobfuncs.Linux tsprinquiry nfs.snap.py mmcesnetlsaddress mmapplypolicy mmdumpkthreads tswatchgpfsconduit mmcessmbchconfig perfmon.callhome.py mmauditpreunmount mmrcp scpwrap mmremotefs tsunlinkfileset mmcrcluster mmnfspreunmount mmcessmbchexport tsauditconsumer mmchattr mmdeldisk mmfsck smb.snap.py mmcesobjdepstoragepolicy mmcheckquota mmprodname mmdelfs mmcallhremote mmgetstate mmcesuserauthlsservice mmcesnetup mmremotecluster tsstarthelper mmcloudgateway mmgetconfdata tschpolicy mmchmgr tsloadikm mmcesnetchaddress mmsmbvalidoptions mmkeyserv mmchfileset mmwatch tsprregister mmstartpolicy hadoop.snap.py mmquotaoff mmcesmonitor mmquotaon msgqueueservicesmonitormanager mmlspool mmlsmount mmccrmonitor mmbackup mmlsnodeclass mmrefresh mmnfsrecovernode mmpercentdecode wftopichk tspcachesnapdiff mmdiag mmlssnapshot mmcesobjlsstoragepolicy mmafmctl mmstatdcallout mmksh sshscpwrap ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:967) child config.utilities.macosFirewall 0.000007 ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Linux Checking for program /sw/sources/lsf-tools/2.0/summit/bin/gdb...not found Checking for program /sw/summit/xalt/1.2.1/bin/gdb...not found Checking for program /sw/summit/cuda/10.1.243/bin/gdb...not found Checking for program /sw/summit/forge/20.0.1/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/gdb...not found Checking for program /sw/summit/gcc/6.4.0/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/gdb...not found Checking for program /sw/sources/hpss/bin/gdb...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/gdb...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/gdb...not found Checking for program /opt/ibm/csm/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Executing: uname -s stdout: Linux child config.utilities.debuggers 0.022882 ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 15 #define PETSC_VERSION_SUBMINOR 0 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.003509 ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000579 ============================================================================================= TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/git...not found Checking for program /sw/summit/xalt/1.2.1/bin/git...not found Checking for program /sw/summit/cuda/10.1.243/bin/git...not found Checking for program /sw/summit/forge/20.0.1/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/git...not found Checking for program /sw/summit/gcc/6.4.0/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/git...not found Checking for program /sw/sources/hpss/bin/git...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/git...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/git...not found Checking for program /opt/ibm/csm/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 1.8.3.1 ============================================================================================= TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/hg...not found Checking for program /sw/summit/xalt/1.2.1/bin/hg...not found Checking for program /sw/summit/cuda/10.1.243/bin/hg...not found Checking for program /sw/summit/forge/20.0.1/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/hg...not found Checking for program /sw/summit/gcc/6.4.0/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/hg...not found Checking for program /sw/sources/hpss/bin/hg...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/hg...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/hg...not found Checking for program /opt/ibm/csm/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /usr/local/sbin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /opt/ibm/flightlog/bin/hg...not found Checking for program /opt/ibutils/bin/hg...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/hg...not found Checking for program /opt/puppetlabs/bin/hg...not found Checking for program /usr/lpp/mmfs/bin/hg...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/hg...not found child config.sourceControl 0.009409 ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.15.0-23-gd252018 Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: d25201881f1924b4f6da40968a1a33a3ebaba62b Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2021-04-01 12:44:04 -0400 Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD'] stdout: adams/landau-gpu-opt Defined "VERSION_GIT" to ""v3.15.0-23-gd252018"" Defined "VERSION_DATE_GIT" to ""2021-04-01 12:44:04 -0400"" Defined "VERSION_BRANCH_GIT" to ""adams/landau-gpu-opt"" child PETSc.options.petscclone 0.066966 ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set ============================================================================================= Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-summit-opt-gnu-kokkos-omp, ignoring environment: arch-summit-opt-gnu-kokkos-notpl-cuda ============================================================================================= No previous hashfile found Setting hashfile: arch-summit-opt-gnu-kokkos-omp/lib/petsc/conf/configure-hash Deleting configure hash file: arch-summit-opt-gnu-kokkos-omp/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-summit-opt-gnu-kokkos-omp/lib/petsc/conf/configure-hash child PETSc.options.arch 0.037869 ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:39) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:85) ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:78) ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:62) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:98) child PETSc.options.installDir 0.004691 ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000993 ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.001348 ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1946) ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1976) ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1916) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1937) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:526) Initialize the compiler and linker flags Initialized CFLAGS to -g Initialized CFLAGS to -g Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPFLAGS to Initialized HIPFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to -g Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to -Wno-deprecated-gpu-targets Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:701) Locate a functional C compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicc...not found Checking for program /sw/summit/cuda/10.1.243/bin/mpicc...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc...found Defined make macro "CC" to "mpicc" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.setCompilers/conftest -g /tmp/petsc-Yygc12/config.setCompilers/conftest.o ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.setCompilers/conftest -g /tmp/petsc-Yygc12/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.setCompilers/conftest -g /tmp/petsc-Yygc12/config.setCompilers/conftest.o Testing executable /tmp/petsc-Yygc12/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-Yygc12/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-Yygc12/config.setCompilers/conftest Executing: mpicc --version stdout: gcc (GCC) 6.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:740) Locate a functional C preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicc...not found Checking for program /sw/summit/cuda/10.1.243/bin/mpicc...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc...found Defined make macro "CPP" to "mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers /tmp/petsc-Yygc12/config.setCompilers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:776) Locate a functional CUDA compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/nvcc...found Defined make macro "CUDAC" to "nvcc" ===== Checking compiler Executing: nvcc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-Yygc12/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc --version stdout: nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2019 NVIDIA Corporation Built on Sun_Jul_28_19:07:52_PDT_2019 Cuda compilation tools, release 10.1, V10.1.243 ============================================================================================= TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:816) Locate a functional CUDA preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/nvcc...found Defined make macro "CUDAPP" to "nvcc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include __global__ void testFunction() {return;}; Executing: nvcc -E -I/tmp/petsc-Yygc12/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-Yygc12/config.setCompilers/conftest.cu Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:850) Locate a functional HIP compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/hipcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/hipcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/hipcc...not found Checking for program /sw/summit/forge/20.0.1/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/hipcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/hipcc...not found Checking for program /sw/sources/hpss/bin/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/hipcc...not found Checking for program /opt/ibm/csm/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /usr/local/sbin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /opt/ibm/flightlog/bin/hipcc...not found Checking for program /opt/ibutils/bin/hipcc...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/hipcc...not found Checking for program /opt/puppetlabs/bin/hipcc...not found Checking for program /usr/lpp/mmfs/bin/hipcc...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/hipcc...not found Checking for program /sw/sources/lsf-tools/2.0/summit/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/forge/20.0.1/bin/opt/rocm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/opt/rocm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/opt/rocm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/sources/hpss/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/csm/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/flightlog/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibutils/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/puppetlabs/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/lpp/mmfs/bin/opt/rocm/bin/hipcc...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found ============================================================================================= TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:886) Placeholder for now ============================================================================================= TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:907) Locate a functional SYCL compiler ============================================================================================= TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:933) Placeholder for now ============================================================================================= TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1020) Locate a functional Cxx compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicxx...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicxx...not found Checking for program /sw/summit/cuda/10.1.243/bin/mpicxx...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicxx...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicxx...found Defined make macro "CXX" to "mpicxx" ===== Checking compiler Executing: mpicxx -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-Yygc12/config.setCompilers/conftest -g /tmp/petsc-Yygc12/config.setCompilers/conftest.o ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-Yygc12/config.setCompilers/conftest -g /tmp/petsc-Yygc12/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status ======== Checking running linked program ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-Yygc12/config.setCompilers/conftest -g /tmp/petsc-Yygc12/config.setCompilers/conftest.o Testing executable /tmp/petsc-Yygc12/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-Yygc12/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-Yygc12/config.setCompilers/conftest Executing: mpicxx --version stdout: g++ (GCC) 6.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ============================================================================================= TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1061) Locate a functional Cxx preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicxx...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicxx...not found Checking for program /sw/summit/cuda/10.1.243/bin/mpicxx...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicxx...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicxx...found Defined make macro "CXXPP" to "mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicxx -E -I/tmp/petsc-Yygc12/config.setCompilers /tmp/petsc-Yygc12/config.setCompilers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1160) Locate a functional Fortran compiler ============================================================================================= TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1355) ============================================================================================= TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1454) Check that the archiver exists and can make a library usable by the compiler Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ar...not found Checking for program /sw/summit/xalt/1.2.1/bin/ar...not found Checking for program /sw/summit/cuda/10.1.243/bin/ar...not found Checking for program /sw/summit/forge/20.0.1/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ar...not found Checking for program /sw/summit/gcc/6.4.0/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ar...not found Checking for program /sw/sources/hpss/bin/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ar...not found Checking for program /opt/ibm/csm/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ranlib...not found Checking for program /sw/summit/xalt/1.2.1/bin/ranlib...not found Checking for program /sw/summit/cuda/10.1.243/bin/ranlib...not found Checking for program /sw/summit/forge/20.0.1/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ranlib...not found Checking for program /sw/summit/gcc/6.4.0/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ranlib...not found Checking for program /sw/sources/hpss/bin/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ranlib...not found Checking for program /opt/ibm/csm/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-Yygc12/config.setCompilers/libconf1.a /tmp/petsc-Yygc12/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-Yygc12/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ar...not found Checking for program /sw/summit/xalt/1.2.1/bin/ar...not found Checking for program /sw/summit/cuda/10.1.243/bin/ar...not found Checking for program /sw/summit/forge/20.0.1/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ar...not found Checking for program /sw/summit/gcc/6.4.0/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ar...not found Checking for program /sw/sources/hpss/bin/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ar...not found Checking for program /opt/ibm/csm/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ranlib...not found Checking for program /sw/summit/xalt/1.2.1/bin/ranlib...not found Checking for program /sw/summit/cuda/10.1.243/bin/ranlib...not found Checking for program /sw/summit/forge/20.0.1/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ranlib...not found Checking for program /sw/summit/gcc/6.4.0/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ranlib...not found Checking for program /sw/sources/hpss/bin/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ranlib...not found Checking for program /opt/ibm/csm/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-Yygc12/config.setCompilers/libconf1.a /tmp/petsc-Yygc12/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-Yygc12/config.setCompilers/libconf1.a ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.setCompilers/conftest -g /tmp/petsc-Yygc12/config.setCompilers/conftest.o -L/tmp/petsc-Yygc12/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ============================================================================================= TESTING: checkArchiverRecipeArgfile from config.setCompilers(config/BuildSystem/config/setCompilers.py:1518) Checks if AR handles @ notation Executing: /usr/bin/ar cr checkRecipeArgfile.a @checkRecipeArgfile.args Defined make macro "AR_ARGFILE" to "yes" ============================================================================================= TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1598) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker mpicc using flags ['-shared'] Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicc...not found Checking for program /sw/summit/cuda/10.1.243/bin/mpicc...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc...found Defined make macro "LD_SHARED" to "mpicc" Trying C compiler flag Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.setCompilers/conftest -shared -g /tmp/petsc-Yygc12/config.setCompilers/conftest.o Valid C linker flag -shared ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /tmp/petsc-Yygc12/config.setCompilers/libconftest.so -shared -g /tmp/petsc-Yygc12/config.setCompilers/conftest.o ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.setCompilers/conftest -g /tmp/petsc-Yygc12/config.setCompilers/conftest.o -L/tmp/petsc-Yygc12/config.setCompilers -lconftest Using shared linker mpicc with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux ============================================================================================= TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1298) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Executing: mpicxx -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /tmp/petsc-Yygc12/config.setCompilers/libconftest.so -shared -g /tmp/petsc-Yygc12/config.setCompilers/conftest.o Accepted Cxx PIC code without compiler flag Trying CUDA for PIC code without any compiler flag Executing: nvcc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-Yygc12/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with ===== Checking linker Executing: nvcc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-Yygc12/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /tmp/petsc-Yygc12/config.setCompilers/libconftest.so -shared -g /tmp/petsc-Yygc12/config.setCompilers/conftest.o Accepted CUDA PIC code without compiler flag ============================================================================================= TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1711) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Executing: uname -s stdout: Linux Executing: mpicc -V Trying C linker flag -Wl,-rpath, Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.setCompilers/conftest -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc -g /tmp/petsc-Yygc12/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc Executing: uname -s stdout: Linux Executing: mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: mpicxx -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-Yygc12/config.setCompilers/conftest -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc -g /tmp/petsc-Yygc12/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc Executing: uname -s stdout: Linux Executing: mpicc -V Trying CUDA linker flag -Wl,-rpath, Executing: nvcc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-Yygc12/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc -o /tmp/petsc-Yygc12/config.setCompilers/conftest /tmp/petsc-Yygc12/config.setCompilers/conftest.o Valid CUDA linker flag -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc ============================================================================================= TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1750) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Executing: mpicc -o /tmp/petsc-Yygc12/config.setCompilers/libconftest.so -shared -g /tmp/petsc-Yygc12/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ============================================================================================= TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1796) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.libraries/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.libraries/conftest -g /tmp/petsc-Yygc12/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker mpicc using flags ['-shared'] Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicc...not found Checking for program /sw/summit/cuda/10.1.243/bin/mpicc...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "mpicc" Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.setCompilers/conftest -shared -g /tmp/petsc-Yygc12/config.setCompilers/conftest.o -ldl Valid C linker flag -shared ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: mpicc -o /tmp/petsc-Yygc12/config.setCompilers/libconftest.so -shared -g /tmp/petsc-Yygc12/config.setCompilers/conftest.o -ldl ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.setCompilers -g /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/tmp/petsc-Yygc12/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.setCompilers/conftest -g /tmp/petsc-Yygc12/config.setCompilers/conftest.o -ldl Using dynamic linker mpicc with flags ['-shared'] and library extension so ============================================================================================= TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1845) Output module data as defines and substitutions Substituting "CC" with "mpicc" Substituting "CFLAGS" with "-g" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CUDAC" with "nvcc" Substituting "CUDAFLAGS" with "" Substituting "CUDAPP" with "nvcc -E" Substituting "CUDAPPFLAGS" with "-Wno-deprecated-gpu-targets" Substituting "CXX" with "mpicxx" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "-g" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "" Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 16.651762 ============================================================================================= TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.002108 ============================================================================================= TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:82) Get the default compiler flags Defined make macro "C_VERSION" to "gcc (GCC) 6.4.0" Ignoring default options which were overridden using --CFLAGS -g Trying C compiler flag -O Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.setCompilers -g -O /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -O Added C compiler flag -O Defined make macro "Cxx_VERSION" to "g++ (GCC) 6.4.0" Ignoring default options which were overridden using --CXXFLAGS -g Trying Cxx compiler flag -O Executing: mpicxx -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -g -O /tmp/petsc-Yygc12/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -O Added Cxx compiler flag -O Defined make macro "CUDA_VERSION" to "nvcc: NVIDIA (R) Cuda compiler driver" Trying CUDA compiler flag -O Executing: nvcc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -O -Wno-deprecated-gpu-targets /tmp/petsc-Yygc12/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : '-Wno-deprecated-gpu-targets': expected a number Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -O nvcc fatal : '-Wno-deprecated-gpu-targets': expected a number PETSc Error: No output file produced Rejecting compiler flag -O due to nonzero status from link Rejecting compiler flag -O due to nvcc fatal : '-Wno-deprecated-gpu-targets': expected a number PETSc Error: No output file produced Rejected CUDA compiler flag -O ============================================================================================= TESTING: checkIntelHardwareSupport from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:175) Use Linux/MacOS commands to determine what operations the hardware supports Executing: lscpu stdout: Architecture: ppc64le Byte Order: Little Endian CPU(s): 128 On-line CPU(s) list: 0-127 Thread(s) per core: 4 Core(s) per socket: 16 Socket(s): 2 NUMA node(s): 6 Model: 2.1 (pvr 004e 1201) Model name: POWER9, altivec supported CPU max MHz: 3800.0000 CPU min MHz: 2300.0000 L1d cache: 32K L1i cache: 32K L2 cache: 512K L3 cache: 10240K NUMA node0 CPU(s): 0-63 NUMA node8 CPU(s): 64-127 NUMA node252 CPU(s): NUMA node253 CPU(s): NUMA node254 CPU(s): NUMA node255 CPU(s): ============================================================================================= TESTING: checkCompilerMacros from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:166) Save the list of CPP macros defined by the C and C++ compiler, does not work for all compilers Executing: mpicc -c -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilerFlags -g -O /tmp/petsc-Yygc12/config.compilerFlags/conftest.c -E -dM stdout: #define __DBL_MIN_EXP__ (-1021) #define __builtin_vsx_xvmsubmsp __builtin_vsx_xvmsubsp #define __UINT_LEAST16_MAX__ 0xffff #define __ATOMIC_ACQUIRE 2 #define __FLT_MIN__ 1.17549435082228750796873653722225e-38F #define __GCC_IEC_559_COMPLEX 2 #define __UINT_LEAST8_TYPE__ unsigned char #define __VEC__ 10206 #define __INTMAX_C(c) c ## L #define __CHAR_BIT__ 8 #define _ARCH_PPCGR 1 #define __UINT8_MAX__ 0xff #define __builtin_vsx_xvnmaddadp __builtin_vsx_xvnmadddp #define __WINT_MAX__ 0xffffffffU #define __PPC64__ 1 #define __RECIPF__ 1 #define __UPPER_REGS_SF__ 1 #define __builtin_vsx_xxlnor __builtin_vec_nor #define __ORDER_LITTLE_ENDIAN__ 1234 #define __SIZE_MAX__ 0xffffffffffffffffUL #define __WCHAR_MAX__ 0x7fffffff #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __DBL_DENORM_MIN__ ((double)4.94065645841246544176568792868221e-324L) #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __ALTIVEC__ 1 #define __GCC_IEC_559 2 #define _LITTLE_ENDIAN 1 #define __FLT_EVAL_METHOD__ 0 #define __unix__ 1 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define pixel pixel #define _ARCH_PPCSQ 1 #define bool bool #define __UINT_FAST64_MAX__ 0xffffffffffffffffUL #define __SIG_ATOMIC_TYPE__ int #define __DBL_MIN_10_EXP__ (-307) #define __FINITE_MATH_ONLY__ 0 #define __GNUC_PATCHLEVEL__ 0 #define __builtin_vsx_xvnmaddasp __builtin_vsx_xvnmaddsp #define __UINT_FAST8_MAX__ 0xff #define __has_include(STR) __has_include__(STR) #define __DEC64_MAX_EXP__ 385 #define __INT8_C(c) c #define __builtin_vsx_xvnmsubmdp __builtin_vsx_xvnmsubdp #define __UINT_LEAST64_MAX__ 0xffffffffffffffffUL #define __SHRT_MAX__ 0x7fff #define __LDBL_MAX__ 1.79769313486231580793728971405301e+308L #define __UINT_LEAST8_MAX__ 0xff #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define _ARCH_PPC 1 #define __UINTMAX_TYPE__ long unsigned int #define __linux 1 #define __DEC32_EPSILON__ 1E-6DF #define __HTM__ 1 #define __OPTIMIZE__ 1 #define __CHAR_UNSIGNED__ 1 #define __UINT32_MAX__ 0xffffffffU #define __RECIP_PRECISION__ 1 #define __LDBL_MAX_EXP__ 1024 #define __WINT_MIN__ 0U #define __builtin_vsx_xvmaddmdp __builtin_vsx_xvmadddp #define __linux__ 1 #define __builtin_vsx_vperm __builtin_vec_perm #define __SCHAR_MAX__ 0x7f #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define vector vector #define __builtin_vsx_xvnmsubmsp __builtin_vsx_xvnmsubsp #define __INT64_C(c) c ## L #define __DBL_DIG__ 15 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __SIZEOF_INT__ 4 #define __SIZEOF_POINTER__ 8 #define __USER_LABEL_PREFIX__ #define __STDC_HOSTED__ 1 #define __LDBL_HAS_INFINITY__ 1 #define _ARCH_PWR4 1 #define _ARCH_PWR5 1 #define _ARCH_PWR6 1 #define _ARCH_PWR7 1 #define _ARCH_PWR8 1 #define __builtin_vsx_xvmaddmsp __builtin_vsx_xvmaddsp #define __CMODEL_MEDIUM__ 1 #define __FLT_EPSILON__ 1.19209289550781250000000000000000e-7F #define __LDBL_MIN__ 2.00416836000897277799610805135016e-292L #define __STDC_UTF_16__ 1 #define __DEC32_MAX__ 9.999999E96DF #define __INT32_MAX__ 0x7fffffff #define __SIZEOF_LONG__ 8 #define __STDC_IEC_559__ 1 #define __STDC_ISO_10646__ 201103L #define __UINT16_C(c) c #define __DECIMAL_DIG__ 33 #define __gnu_linux__ 1 #define __has_include_next(STR) __has_include_next__(STR) #define __LDBL_HAS_QUIET_NAN__ 1 #define _CALL_LINUX 1 #define __GNUC__ 6 #define __FLT_HAS_DENORM__ 1 #define __SIZEOF_LONG_DOUBLE__ 16 #define __powerpc64__ 1 #define __BIGGEST_ALIGNMENT__ 16 #define __QUAD_MEMORY_ATOMIC__ 1 #define __DBL_MAX__ ((double)1.79769313486231570814527423731704e+308L) #define __INT_FAST32_MAX__ 0x7fffffffffffffffL #define __DBL_HAS_INFINITY__ 1 #define __builtin_vsx_xvnmaddmdp __builtin_vsx_xvnmadddp #define __DEC32_MIN_EXP__ (-94) #define __builtin_vsx_xxlandc __builtin_vec_andc #define __INT_FAST16_TYPE__ long int #define __LDBL_HAS_DENORM__ 1 #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __INT_LEAST32_MAX__ 0x7fffffff #define __DEC32_MIN__ 1E-95DF #define __DBL_MAX_EXP__ 1024 #define __DEC128_EPSILON__ 1E-33DL #define __PTRDIFF_MAX__ 0x7fffffffffffffffL #define __STDC_NO_THREADS__ 1 #define __STRUCT_PARM_ALIGN__ 16 #define __TM_FENCE__ 1 #define __LONG_LONG_MAX__ 0x7fffffffffffffffLL #define __SIZEOF_SIZE_T__ 8 #define __builtin_vsx_xvnmaddmsp __builtin_vsx_xvnmaddsp #define __PPC__ 1 #define __SIZEOF_WINT_T__ 4 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __GXX_ABI_VERSION 1010 #define __RECIP__ 1 #define __FLT_MIN_EXP__ (-125) #define __INT_FAST64_TYPE__ long int #define __FP_FAST_FMAF 1 #define __DBL_MIN__ ((double)2.22507385850720138309023271733240e-308L) #define __LONGDOUBLE128 1 #define __LP64__ 1 #define __DEC128_MIN__ 1E-6143DL #define __REGISTER_PREFIX__ #define __UINT16_MAX__ 0xffff #define __DBL_HAS_DENORM__ 1 #define __builtin_vsx_xxland __builtin_vec_and #define __UINT8_TYPE__ unsigned char #define __FLT_MANT_DIG__ 24 #define __VERSION__ "6.4.0" #define __UINT64_C(c) c ## UL #define _STDC_PREDEF_H 1 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __pixel __attribute__((altivec(pixel__))) unsigned short #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __STDC_IEC_559_COMPLEX__ 1 #define __INT32_C(c) c #define __DEC64_EPSILON__ 1E-15DD #define __ORDER_PDP_ENDIAN__ 3412 #define __DEC128_MIN_EXP__ (-6142) #define __INT_FAST32_TYPE__ long int #define __powerpc__ 1 #define __UINT_LEAST16_TYPE__ short unsigned int #define _ARCH_PWR5X 1 #define unix 1 #define __INT16_MAX__ 0x7fff #define __SIZE_TYPE__ long unsigned int #define __UINT64_MAX__ 0xffffffffffffffffUL #define __INT8_TYPE__ signed char #define __ELF__ 1 #define __HAVE_BSWAP__ 1 #define __FLT_RADIX__ 2 #define __INT_LEAST16_TYPE__ short int #define __LDBL_EPSILON__ 4.94065645841246544176568792868221e-324L #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 0x7fffffff #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __SIZEOF_PTRDIFF_T__ 8 #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __INT_FAST16_MAX__ 0x7fffffffffffffffL #define __vector __attribute__((altivec(vector__))) #define __UINT_FAST32_MAX__ 0xffffffffffffffffUL #define __UINT_LEAST64_TYPE__ long unsigned int #define __builtin_vsx_xvmsubadp __builtin_vsx_xvmsubdp #define __builtin_vsx_xxsel __builtin_vec_sel #define __FLT_HAS_QUIET_NAN__ 1 #define __bool __attribute__((altivec(bool__))) unsigned #define __FLT_MAX_10_EXP__ 38 #define __LONG_MAX__ 0x7fffffffffffffffL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __FLT_HAS_INFINITY__ 1 #define __unix 1 #define __CRYPTO__ 1 #define __UINT_FAST16_TYPE__ long unsigned int #define __DEC64_MAX__ 9.999999999999999E384DD #define __CHAR16_TYPE__ short unsigned int #define __PRAGMA_REDEFINE_EXTNAME 1 #define __INT_LEAST16_MAX__ 0x7fff #define __LONG_DOUBLE_IBM128__ 1 #define __DEC64_MANT_DIG__ 16 #define __INT64_MAX__ 0x7fffffffffffffffL #define __UINT_LEAST32_MAX__ 0xffffffffU #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __INT_LEAST64_TYPE__ long int #define __UPPER_REGS_DF__ 1 #define __INT16_TYPE__ short int #define __INT_LEAST8_TYPE__ signed char #define __STDC_VERSION__ 201112L #define __DEC32_MAX_EXP__ 97 #define __INT_FAST8_MAX__ 0x7f #define __INTPTR_MAX__ 0x7fffffffffffffffL #define linux 1 #define __LITTLE_ENDIAN__ 1 #define __builtin_vsx_xvmsubasp __builtin_vsx_xvmsubsp #define __LDBL_MANT_DIG__ 106 #define __DBL_HAS_QUIET_NAN__ 1 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INTPTR_TYPE__ long int #define __UINT16_TYPE__ short unsigned int #define __WCHAR_TYPE__ int #define __SIZEOF_FLOAT__ 4 #define __UINTPTR_MAX__ 0xffffffffffffffffUL #define __DEC64_MIN_EXP__ (-382) #define __INT_FAST64_MAX__ 0x7fffffffffffffffL #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __RSQRTE__ 1 #define __FLT_DIG__ 6 #define __UINT_FAST64_TYPE__ long unsigned int #define __INT_MAX__ 0x7fffffff #define __LONG_DOUBLE_128__ 1 #define __VSX__ 1 #define __INT64_TYPE__ long int #define __FLT_MAX_EXP__ 128 #define __builtin_vsx_xxlor __builtin_vec_or #define __ORDER_BIG_ENDIAN__ 4321 #define __DBL_MANT_DIG__ 53 #define __INT_LEAST64_MAX__ 0x7fffffffffffffffL #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __builtin_vsx_xxlxor __builtin_vec_xor #define __DEC64_MIN__ 1E-383DD #define __WINT_TYPE__ unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __SIZEOF_SHORT__ 2 #define __LDBL_MIN_EXP__ (-968) #define __INT_LEAST8_MAX__ 0x7f #define __RSQRTEF__ 1 #define __SIZEOF_INT128__ 16 #define __LDBL_MAX_10_EXP__ 308 #define __ATOMIC_RELAXED 0 #define __DBL_EPSILON__ ((double)2.22044604925031308084726333618164e-16L) #define _LP64 1 #define __UINT8_C(c) c #define __INT_LEAST32_TYPE__ int #define __SIZEOF_WCHAR_T__ 4 #define __UINT64_TYPE__ long unsigned int #define __builtin_vsx_xvnmsubadp __builtin_vsx_xvnmsubdp #define __INT_FAST8_TYPE__ signed char #define __GNUC_STDC_INLINE__ 1 #define __DBL_DECIMAL_DIG__ 17 #define __STDC_UTF_32__ 1 #define __DEC_EVAL_METHOD__ 2 #define __VEC_ELEMENT_REG_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __builtin_vsx_xvmaddadp __builtin_vsx_xvmadddp #define __APPLE_ALTIVEC__ 1 #define __UINT32_C(c) c ## U #define __INTMAX_MAX__ 0x7fffffffffffffffL #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLT_DENORM_MIN__ 1.40129846432481707092372958328992e-45F #define __builtin_vsx_xvnmsubasp __builtin_vsx_xvnmsubsp #define __INT8_MAX__ 0x7f #define __UINT_FAST32_TYPE__ long unsigned int #define __CHAR32_TYPE__ unsigned int #define __FLT_MAX__ 3.40282346638528859811704183484517e+38F #define __FP_FAST_FMA 1 #define __INT32_TYPE__ int #define __SIZEOF_DOUBLE__ 8 #define __FLT_MIN_10_EXP__ (-37) #define __INTMAX_TYPE__ long int #define __DEC128_MAX_EXP__ 6145 #define __POWER8_VECTOR__ 1 #define __ATOMIC_CONSUME 1 #define __GNUC_MINOR__ 4 #define __UINTMAX_MAX__ 0xffffffffffffffffUL #define __DEC32_MANT_DIG__ 7 #define __builtin_vsx_xvmaddasp __builtin_vsx_xvmaddsp #define __DBL_MAX_10_EXP__ 308 #define __LDBL_DENORM_MIN__ 4.94065645841246544176568792868221e-324L #define __INT16_C(c) c #define __STDC__ 1 #define __builtin_vsx_xvmsubmdp __builtin_vsx_xvmsubdp #define __PTRDIFF_TYPE__ long int #define __ATOMIC_SEQ_CST 5 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_16 1 #define __UINT32_TYPE__ unsigned int #define __UINTPTR_TYPE__ long unsigned int #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define _ARCH_PPC64 1 #define __DEC128_MANT_DIG__ 34 #define __LDBL_MIN_10_EXP__ (-291) #define __SIZEOF_LONG_LONG__ 8 #define _Bool _Bool #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __LDBL_DIG__ 31 #define __FLT_DECIMAL_DIG__ 9 #define __UINT_FAST16_MAX__ 0xffffffffffffffffUL #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __UINT_FAST8_TYPE__ unsigned char #define _CALL_ELF 2 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_RELEASE 3 Executing: mpicxx -c -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilerFlags -g -O /tmp/petsc-Yygc12/config.compilerFlags/conftest.cc -E -dM stdout: #define __DBL_MIN_EXP__ (-1021) #define __cpp_attributes 200809 #define __builtin_vsx_xvmsubmsp __builtin_vsx_xvmsubsp #define __UINT_LEAST16_MAX__ 0xffff #define __ATOMIC_ACQUIRE 2 #define __FLT_MIN__ 1.17549435082228750796873653722225e-38F #define __GCC_IEC_559_COMPLEX 2 #define __cpp_aggregate_nsdmi 201304 #define __UINT_LEAST8_TYPE__ unsigned char #define __INTMAX_C(c) c ## L #define __builtin_vsx_xxlandc __builtin_vec_andc #define __CHAR_BIT__ 8 #define _ARCH_PPCGR 1 #define __UINT8_MAX__ 0xff #define __builtin_vsx_xvmsubmdp __builtin_vsx_xvmsubdp #define __builtin_vsx_xvnmaddadp __builtin_vsx_xvnmadddp #define __WINT_MAX__ 0xffffffffU #define __PPC64__ 1 #define __RECIPF__ 1 #define __UPPER_REGS_SF__ 1 #define __cpp_static_assert 200410 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __SIZE_MAX__ 0xffffffffffffffffUL #define __WCHAR_MAX__ 0x7fffffff #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __DBL_DENORM_MIN__ double(4.94065645841246544176568792868221e-324L) #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __ALTIVEC__ 1 #define __GCC_IEC_559 2 #define _LITTLE_ENDIAN 1 #define __FLT_EVAL_METHOD__ 0 #define __unix__ 1 #define __cpp_binary_literals 201304 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __cpp_variadic_templates 200704 #define pixel pixel #define _ARCH_PPCSQ 1 #define bool bool #define __UINT_FAST64_MAX__ 0xffffffffffffffffUL #define __SIG_ATOMIC_TYPE__ int #define __DBL_MIN_10_EXP__ (-307) #define __FINITE_MATH_ONLY__ 0 #define __cpp_variable_templates 201304 #define __GNUC_PATCHLEVEL__ 0 #define __builtin_vsx_xvnmaddasp __builtin_vsx_xvnmaddsp #define __UINT_FAST8_MAX__ 0xff #define __has_include(STR) __has_include__(STR) #define __DEC64_MAX_EXP__ 385 #define __INT8_C(c) c #define __builtin_vsx_xvnmsubmdp __builtin_vsx_xvnmsubdp #define __UINT_LEAST64_MAX__ 0xffffffffffffffffUL #define __SHRT_MAX__ 0x7fff #define __LDBL_MAX__ 1.79769313486231580793728971405301e+308L #define __UINT_LEAST8_MAX__ 0xff #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define _ARCH_PPC 1 #define __UINTMAX_TYPE__ long unsigned int #define __linux 1 #define __DEC32_EPSILON__ 1E-6DF #define __HTM__ 1 #define __OPTIMIZE__ 1 #define __CHAR_UNSIGNED__ 1 #define __UINT32_MAX__ 0xffffffffU #define __GXX_EXPERIMENTAL_CXX0X__ 1 #define __RECIP_PRECISION__ 1 #define __LDBL_MAX_EXP__ 1024 #define __WINT_MIN__ 0U #define __builtin_vsx_xvmaddmdp __builtin_vsx_xvmadddp #define __linux__ 1 #define __builtin_vsx_vperm __builtin_vec_perm #define __SCHAR_MAX__ 0x7f #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define vector vector #define __builtin_vsx_xvnmsubmsp __builtin_vsx_xvnmsubsp #define __INT64_C(c) c ## L #define __DBL_DIG__ 15 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __SIZEOF_INT__ 4 #define __SIZEOF_POINTER__ 8 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __USER_LABEL_PREFIX__ #define __STDC_HOSTED__ 1 #define __LDBL_HAS_INFINITY__ 1 #define _ARCH_PWR4 1 #define _ARCH_PWR5 1 #define _ARCH_PWR6 1 #define _ARCH_PWR7 1 #define _ARCH_PWR8 1 #define __builtin_vsx_xvmaddmsp __builtin_vsx_xvmaddsp #define __CMODEL_MEDIUM__ 1 #define __FLT_EPSILON__ 1.19209289550781250000000000000000e-7F #define __GXX_WEAK__ 1 #define __LDBL_MIN__ 2.00416836000897277799610805135016e-292L #define __DEC32_MAX__ 9.999999E96DF #define __INT32_MAX__ 0x7fffffff #define __SIZEOF_LONG__ 8 #define __STDC_IEC_559__ 1 #define __STDC_ISO_10646__ 201103L #define __UINT16_C(c) c #define __DECIMAL_DIG__ 33 #define __gnu_linux__ 1 #define __has_include_next(STR) __has_include_next__(STR) #define __LDBL_HAS_QUIET_NAN__ 1 #define _CALL_LINUX 1 #define __GNUC__ 6 #define __GXX_RTTI 1 #define __cpp_delegating_constructors 200604 #define __FLT_HAS_DENORM__ 1 #define __SIZEOF_LONG_DOUBLE__ 16 #define __powerpc64__ 1 #define __BIGGEST_ALIGNMENT__ 16 #define __STDC_UTF_16__ 1 #define __QUAD_MEMORY_ATOMIC__ 1 #define __DBL_MAX__ double(1.79769313486231570814527423731704e+308L) #define __cpp_raw_strings 200710 #define __INT_FAST32_MAX__ 0x7fffffffffffffffL #define __DBL_HAS_INFINITY__ 1 #define __INT64_MAX__ 0x7fffffffffffffffL #define __builtin_vsx_xvnmaddmdp __builtin_vsx_xvnmadddp #define __DEC32_MIN_EXP__ (-94) #define __INT_FAST16_TYPE__ long int #define __LDBL_HAS_DENORM__ 1 #define __cplusplus 201402L #define __cpp_ref_qualifiers 200710 #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __INT_LEAST32_MAX__ 0x7fffffff #define __DEC32_MIN__ 1E-95DF #define __DEPRECATED 1 #define __cpp_rvalue_references 200610 #define __DBL_MAX_EXP__ 1024 #define __DEC128_EPSILON__ 1E-33DL #define __PTRDIFF_MAX__ 0x7fffffffffffffffL #define __STDC_NO_THREADS__ 1 #define __STRUCT_PARM_ALIGN__ 16 #define __TM_FENCE__ 1 #define __GNUG__ 6 #define __LONG_LONG_MAX__ 0x7fffffffffffffffLL #define __SIZEOF_SIZE_T__ 8 #define __builtin_vsx_xvnmaddmsp __builtin_vsx_xvnmaddsp #define __PPC__ 1 #define __cpp_rvalue_reference 200610 #define __cpp_nsdmi 200809 #define __SIZEOF_WINT_T__ 4 #define __cpp_initializer_lists 200806 #define __cpp_hex_float 201603 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __GXX_ABI_VERSION 1010 #define __RECIP__ 1 #define __FLT_MIN_EXP__ (-125) #define __cpp_lambdas 200907 #define __INT_FAST64_TYPE__ long int #define __FP_FAST_FMAF 1 #define __DBL_MIN__ double(2.22507385850720138309023271733240e-308L) #define __LONGDOUBLE128 1 #define __LP64__ 1 #define __VEC__ 10206 #define __DEC128_MIN__ 1E-6143DL #define __REGISTER_PREFIX__ #define __UINT16_MAX__ 0xffff #define __DBL_HAS_DENORM__ 1 #define __builtin_vsx_xxland __builtin_vec_and #define __UINT8_TYPE__ unsigned char #define __FLT_MANT_DIG__ 24 #define __VERSION__ "6.4.0" #define __UINT64_C(c) c ## UL #define __cpp_unicode_characters 200704 #define _STDC_PREDEF_H 1 #define __cpp_decltype_auto 201304 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __pixel __attribute__((altivec(pixel__))) unsigned short #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __STDC_IEC_559_COMPLEX__ 1 #define __INT32_C(c) c #define __DEC64_EPSILON__ 1E-15DD #define __ORDER_PDP_ENDIAN__ 3412 #define __DEC128_MIN_EXP__ (-6142) #define __INT_FAST32_TYPE__ long int #define __powerpc__ 1 #define __UINT_LEAST16_TYPE__ short unsigned int #define _ARCH_PWR5X 1 #define unix 1 #define __INT16_MAX__ 0x7fff #define __cpp_rtti 199711 #define __SIZE_TYPE__ long unsigned int #define __UINT64_MAX__ 0xffffffffffffffffUL #define __INT8_TYPE__ signed char #define __cpp_digit_separators 201309 #define __ELF__ 1 #define __HAVE_BSWAP__ 1 #define __FLT_RADIX__ 2 #define __INT_LEAST16_TYPE__ short int #define __LDBL_EPSILON__ 4.94065645841246544176568792868221e-324L #define __UINTMAX_C(c) c ## UL #define __GLIBCXX_BITSIZE_INT_N_0 128 #define __SIG_ATOMIC_MAX__ 0x7fffffff #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __cpp_sized_deallocation 201309 #define __SIZEOF_PTRDIFF_T__ 8 #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __INT_FAST16_MAX__ 0x7fffffffffffffffL #define __vector __attribute__((altivec(vector__))) #define __UINT_FAST32_MAX__ 0xffffffffffffffffUL #define __UINT_LEAST64_TYPE__ long unsigned int #define __builtin_vsx_xvmsubadp __builtin_vsx_xvmsubdp #define __builtin_vsx_xxsel __builtin_vec_sel #define __FLT_HAS_QUIET_NAN__ 1 #define __bool __attribute__((altivec(bool__))) unsigned #define __FLT_MAX_10_EXP__ 38 #define __LONG_MAX__ 0x7fffffffffffffffL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __FLT_HAS_INFINITY__ 1 #define __unix 1 #define __cpp_unicode_literals 200710 #define __CRYPTO__ 1 #define __UINT_FAST16_TYPE__ long unsigned int #define __DEC64_MAX__ 9.999999999999999E384DD #define __CHAR16_TYPE__ short unsigned int #define __PRAGMA_REDEFINE_EXTNAME 1 #define __INT_LEAST16_MAX__ 0x7fff #define __LONG_DOUBLE_IBM128__ 1 #define __DEC64_MANT_DIG__ 16 #define __UINT_LEAST32_MAX__ 0xffffffffU #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __INT_LEAST64_TYPE__ long int #define __UPPER_REGS_DF__ 1 #define __INT16_TYPE__ short int #define __INT_LEAST8_TYPE__ signed char #define __DEC32_MAX_EXP__ 97 #define __INT_FAST8_MAX__ 0x7f #define __INTPTR_MAX__ 0x7fffffffffffffffL #define linux 1 #define __cpp_range_based_for 200907 #define __LITTLE_ENDIAN__ 1 #define __EXCEPTIONS 1 #define __builtin_vsx_xvmsubasp __builtin_vsx_xvmsubsp #define __LDBL_MANT_DIG__ 106 #define __DBL_HAS_QUIET_NAN__ 1 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __cpp_return_type_deduction 201304 #define __INTPTR_TYPE__ long int #define __UINT16_TYPE__ short unsigned int #define __WCHAR_TYPE__ int #define __SIZEOF_FLOAT__ 4 #define __UINTPTR_MAX__ 0xffffffffffffffffUL #define __DEC64_MIN_EXP__ (-382) #define __cpp_decltype 200707 #define __INT_FAST64_MAX__ 0x7fffffffffffffffL #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __RSQRTE__ 1 #define __FLT_DIG__ 6 #define __UINT_FAST64_TYPE__ long unsigned int #define __INT_MAX__ 0x7fffffff #define __LONG_DOUBLE_128__ 1 #define __VSX__ 1 #define __INT64_TYPE__ long int #define __FLT_MAX_EXP__ 128 #define __builtin_vsx_xxlor __builtin_vec_or #define __ORDER_BIG_ENDIAN__ 4321 #define __DBL_MANT_DIG__ 53 #define __cpp_inheriting_constructors 200802 #define __INT_LEAST64_MAX__ 0x7fffffffffffffffL #define __builtin_vsx_xxlxor __builtin_vec_xor #define __DEC64_MIN__ 1E-383DD #define __WINT_TYPE__ unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __SIZEOF_SHORT__ 2 #define __LDBL_MIN_EXP__ (-968) #define __INT_LEAST8_MAX__ 0x7f #define __RSQRTEF__ 1 #define __SIZEOF_INT128__ 16 #define __LDBL_MAX_10_EXP__ 308 #define __ATOMIC_RELAXED 0 #define __DBL_EPSILON__ double(2.22044604925031308084726333618164e-16L) #define _LP64 1 #define __UINT8_C(c) c #define __INT_LEAST32_TYPE__ int #define __SIZEOF_WCHAR_T__ 4 #define __UINT64_TYPE__ long unsigned int #define __builtin_vsx_xvnmsubadp __builtin_vsx_xvnmsubdp #define __INT_FAST8_TYPE__ signed char #define __GNUC_STDC_INLINE__ 1 #define __DBL_DECIMAL_DIG__ 17 #define __STDC_UTF_32__ 1 #define __DEC_EVAL_METHOD__ 2 #define __VEC_ELEMENT_REG_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __builtin_vsx_xvmaddadp __builtin_vsx_xvmadddp #define __APPLE_ALTIVEC__ 1 #define __cpp_runtime_arrays 198712 #define __UINT32_C(c) c ## U #define __INTMAX_MAX__ 0x7fffffffffffffffL #define __cpp_alias_templates 200704 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLT_DENORM_MIN__ 1.40129846432481707092372958328992e-45F #define __builtin_vsx_xvnmsubasp __builtin_vsx_xvnmsubsp #define __INT8_MAX__ 0x7f #define __UINT_FAST32_TYPE__ long unsigned int #define __CHAR32_TYPE__ unsigned int #define __FLT_MAX__ 3.40282346638528859811704183484517e+38F #define __FP_FAST_FMA 1 #define __cpp_constexpr 201304 #define __builtin_vsx_xxlnor __builtin_vec_nor #define __INT32_TYPE__ int #define __SIZEOF_DOUBLE__ 8 #define __cpp_exceptions 199711 #define __INTMAX_TYPE__ long int #define __DEC128_MAX_EXP__ 6145 #define __POWER8_VECTOR__ 1 #define __ATOMIC_CONSUME 1 #define __GNUC_MINOR__ 4 #define __GLIBCXX_TYPE_INT_N_0 __int128 #define __UINTMAX_MAX__ 0xffffffffffffffffUL #define __DEC32_MANT_DIG__ 7 #define __builtin_vsx_xvmaddasp __builtin_vsx_xvmaddsp #define __DBL_MAX_10_EXP__ 308 #define __LDBL_DENORM_MIN__ 4.94065645841246544176568792868221e-324L #define __INT16_C(c) c #define __cpp_generic_lambdas 201304 #define __STDC__ 1 #define __PTRDIFF_TYPE__ long int #define __ATOMIC_SEQ_CST 5 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_16 1 #define __UINT32_TYPE__ unsigned int #define __UINTPTR_TYPE__ long unsigned int #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define _ARCH_PPC64 1 #define __DEC128_MANT_DIG__ 34 #define __LDBL_MIN_10_EXP__ (-291) #define __SIZEOF_LONG_LONG__ 8 #define __cpp_user_defined_literals 200809 #define _Bool _Bool #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __LDBL_DIG__ 31 #define __FLT_DECIMAL_DIG__ 9 #define __UINT_FAST16_MAX__ 0xffffffffffffffffUL #define __FLT_MIN_10_EXP__ (-37) #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __UINT_FAST8_TYPE__ unsigned char #define _GNU_SOURCE 1 #define _CALL_ELF 2 #define __cpp_init_captures 201304 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_RELEASE 3 child config.compilerFlags 0.438251 Executing: mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler ============================================================================================= TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1429) Check for -std=c99 or equivalent flag Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -g -O /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Output from compiling with -g -O Accepted C99 compile flag: ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:158) Check for the C/CXX restrict keyword Executing: mpicc -V ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.compilers/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.setCompilers -g -O /tmp/petsc-Yygc12/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:413) Activate format string checking if using the GNU compilers ============================================================================================= TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:128) Check for C inline keyword ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.compilers/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -g -O /tmp/petsc-Yygc12/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ============================================================================================= TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:424) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.compilers/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -g -O /tmp/petsc-Yygc12/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.compilers/conftest -g -O /tmp/petsc-Yygc12/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ============================================================================================= TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:222) Determines the libraries needed to link with C compiled code ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.compilers/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -g -O /tmp/petsc-Yygc12/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-Yygc12/config.compilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.compilers -g -O /tmp/petsc-Yygc12/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicxx -o /tmp/petsc-Yygc12/config.compilers/conftest -g -O /tmp/petsc-Yygc12/config.compilers/conftest.o /tmp/petsc-Yygc12/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1380) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Executing: mpicc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.setCompilers -g -O -MMD -MP /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -g -O -MMD -MP Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Executing: mpicxx -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.setCompilers -g -O -MMD -MP /tmp/petsc-Yygc12/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -MMD -MP Trying CUDA compiler flag -MMD -MP Rejected CUDA compiler flag -MMD -MP Trying CUDA compiler flag -MMD Rejected CUDA compiler flag -MMD Trying CUDA compiler flag -xMMD Rejected CUDA compiler flag -xMMD Trying CUDA compiler flag -qmakedep=gcc Rejected CUDA compiler flag -qmakedep=gcc Trying CUDA compiler flag -MD Rejected CUDA compiler flag -MD Executing: nvcc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -MMD -MP -Wno-deprecated-gpu-targets /tmp/petsc-Yygc12/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -MMD -MP nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Rejecting compiler flag -MMD -MP due to nonzero status from link Rejecting compiler flag -MMD -MP due to nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Executing: nvcc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -MMD -Wno-deprecated-gpu-targets /tmp/petsc-Yygc12/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -MMD nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Rejecting compiler flag -MMD due to nonzero status from link Rejecting compiler flag -MMD due to nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Executing: nvcc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -xMMD -Wno-deprecated-gpu-targets /tmp/petsc-Yygc12/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'xMMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -xMMD nvcc fatal : Unknown option 'xMMD' PETSc Error: No output file produced Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to nvcc fatal : Unknown option 'xMMD' PETSc Error: No output file produced Executing: nvcc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -qmakedep=gcc -Wno-deprecated-gpu-targets /tmp/petsc-Yygc12/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'qmakedep' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -qmakedep=gcc nvcc fatal : Unknown option 'qmakedep' PETSc Error: No output file produced Rejecting compiler flag -qmakedep=gcc due to nonzero status from link Rejecting compiler flag -qmakedep=gcc due to nvcc fatal : Unknown option 'qmakedep' PETSc Error: No output file produced Executing: nvcc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -MD -Wno-deprecated-gpu-targets /tmp/petsc-Yygc12/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -MD nvcc fatal : Unknown option 'MD' PETSc Error: No output file produced Rejecting compiler flag -MD due to nonzero status from link Rejecting compiler flag -MD due to nvcc fatal : Unknown option 'MD' PETSc Error: No output file produced Executing: mpicxx --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:158) Check for the C/CXX restrict keyword Executing: mpicc -V ===== Checking compiler Executing: mpicxx -c -o /tmp/petsc-Yygc12/config.compilers/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.setCompilers -g -O /tmp/petsc-Yygc12/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:471) Determine the CXX dialect supported by the compiler(language) [and correspoding compiler option - if any]. isGNU indicates if the compiler is g++. -with--dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 for Cxx with flag: Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Executing: mpicxx -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.setCompilers -g -O /tmp/petsc-Yygc12/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4) + (int)std::real(I); ; return 0; } Output from compiling with -g -O ============================================================================================= TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:443) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Executing: mpicxx -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.setCompilers -g -O /tmp/petsc-Yygc12/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Output from compiling with -g -O ============================================================================================= TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:143) Check for C++ inline keyword ===== Checking compiler Executing: mpicxx -c -o /tmp/petsc-Yygc12/config.compilers/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.setCompilers -g -O /tmp/petsc-Yygc12/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ============================================================================================= TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:566) Determines the libraries needed to link with C++ from C and Fortran ===== Checking compiler Executing: mpicxx -c -o /tmp/petsc-Yygc12/config.compilers/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.setCompilers -g -O /tmp/petsc-Yygc12/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.compilers/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.setCompilers -g -O /tmp/petsc-Yygc12/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicc -o /tmp/petsc-Yygc12/config.compilers/conftest -g -O /tmp/petsc-Yygc12/config.compilers/conftest.o /tmp/petsc-Yygc12/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-Yygc12/config.compilers/confc.o: In function `asub()': /tmp/petsc-Yygc12/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /tmp/petsc-Yygc12/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /tmp/petsc-Yygc12/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /tmp/petsc-Yygc12/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /tmp/petsc-Yygc12/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-Yygc12/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-Yygc12/config.compilers/confc.o: In function `__static_initialization_and_destruction_0': /autofs/nccs-svm1_sw/summit/gcc/6.4.0/include/c++/6.4.0/iostream:74: undefined reference to `std::ios_base::Init::Init()' /tmp/petsc-Yygc12/config.compilers/confc.o:(.toc+0x0): undefined reference to `typeinfo for int' /tmp/petsc-Yygc12/config.compilers/confc.o:(.toc+0x8): undefined reference to `std::cout' /tmp/petsc-Yygc12/config.compilers/confc.o:(.toc+0x10): undefined reference to `std::ios_base::Init::~Init()' /tmp/petsc-Yygc12/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /tmp/petsc-Yygc12/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-Yygc12/config.compilers/conftest' collect2: error: ld returned 1 exit status Executing: uname -s stdout: Linux ===== Checking compiler Executing: mpicxx -c -o /tmp/petsc-Yygc12/config.compilers/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.setCompilers -g -O /tmp/petsc-Yygc12/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.compilers/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.setCompilers -g -O /tmp/petsc-Yygc12/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicc -o /tmp/petsc-Yygc12/config.compilers/conftest -g -O /tmp/petsc-Yygc12/config.compilers/conftest.o /tmp/petsc-Yygc12/config.compilers/confc.o -lstdc++ -ldl compilers: C++ requires -lstdc++ to link with C compiler Executing: mpicxx -V ============================================================================================= TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:471) Determine the CXX dialect supported by the compiler(language) [and correspoding compiler option - if any]. isGNU indicates if the compiler is g++. -with--dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 for CUDA with flag: Defined "HAVE_CUDA_DIALECT_CXX14" to "1" Defined "HAVE_CUDA_DIALECT_CXX11" to "1" Executing: nvcc -c -o /tmp/petsc-Yygc12/config.setCompilers/conftest.o -I/tmp/petsc-Yygc12/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-Yygc12/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4) + (int)std::real(I); ; return 0; } Output from compiling with ============================================================================================= TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1506) child config.compilers 5.568157 ============================================================================================= TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.utilities.closure/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.utilities.closure -g -O /tmp/petsc-Yygc12/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-Yygc12/config.utilities.closure/conftest.c: In function 'main': /tmp/petsc-Yygc12/config.utilities.closure/conftest.c:6:6: error: expected identifier or '(' before '^' token int (^closure)(int);; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link child config.utilities.closure 0.056291 child config.compilersFortran 0.000031 ============================================================================================= TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.headers/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -g -O /tmp/petsc-Yygc12/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.headers/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -g -O /tmp/petsc-Yygc12/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.headers/conftest -g -O /tmp/petsc-Yygc12/config.headers/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-Yygc12/config.headers/conftest to see if it can be run Executing: /tmp/petsc-Yygc12/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-Yygc12/config.headers/conftest ============================================================================================= TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c ============================================================================================= TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.headers/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -g -O /tmp/petsc-Yygc12/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ============================================================================================= TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.headers/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -g -O /tmp/petsc-Yygc12/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conftest.c" # 1 "/tmp/petsc-Yygc12/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 # 1 "/tmp/petsc-Yygc12/config.headers/conffix.h" 1 # 3 "/tmp/petsc-Yygc12/config.headers/conftest.c" 2 stderr: /tmp/petsc-Yygc12/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-Yygc12/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.headers/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -g -O /tmp/petsc-Yygc12/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 3.796563 ============================================================================================= TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.headers -g -O /tmp/petsc-Yygc12/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -g -O /tmp/petsc-Yygc12/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.utilities.cacheDetails/conftest -g -O /tmp/petsc-Yygc12/config.utilities.cacheDetails/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-Yygc12/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-Yygc12/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-Yygc12/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "32" child config.utilities.cacheDetails 0.468180 ============================================================================================= TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:42) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.types -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -g -O /tmp/petsc-Yygc12/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ============================================================================================= TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:48) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-Yygc12/config.types/conftest.c: In function 'main': /tmp/petsc-Yygc12/config.types/conftest.c:11:1: error: unknown type name '__int64' __int64 a;; ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ============================================================================================= TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:54) Checks for types associated with sizes, such as size_t. Checking for type: size_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ============================================================================================= TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:64) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ============================================================================================= TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:59) Checks for types associated with integers, such as int32_t. Checking for type: int32_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ============================================================================================= TESTING: checkPID from config.types(config/BuildSystem/config/types.py:70) Checks for pid_t, and defines it if necessary Checking for type: pid_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ============================================================================================= TESTING: checkUID from config.types(config/BuildSystem/config/types.py:74) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.types -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.types/conftest.c ============================================================================================= TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:81) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.types/conftest -g -O /tmp/petsc-Yygc12/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_C99_COMPLEX" to "1" ============================================================================================= TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:92) Check for complex numbers in namespace std ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.types -I/tmp/petsc-Yygc12/config.setCompilers -g -O /tmp/petsc-Yygc12/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Executing: mpicxx -o /tmp/petsc-Yygc12/config.types/conftest -g -O /tmp/petsc-Yygc12/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ============================================================================================= TESTING: checkConst from config.types(config/BuildSystem/config/types.py:103) Checks for working const, and if not found defines it to empty string ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" Defined "USING_64BIT_PTR" to "1" ============================================================================================= TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:193) ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" ===== Checking compiler Executing: mpicxx -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" ============================================================================================= TESTING: checkMaxPathLen from config.types(config/BuildSystem/config/types.py:215) Determining PETSC_MAX_PATH_LEN ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-Yygc12/config.types/conftest.o -I/tmp/petsc-Yygc12/config.libraries -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -g -O /tmp/petsc-Yygc12/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.types /tmp/petsc-Yygc12/config.types/conftest.c Defined "MAX_PATH_LEN" to "4096" child config.types 2.255854 ============================================================================================= TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.001053 ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.libraries/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -I/tmp/petsc-Yygc12/config.libraries -g -O /tmp/petsc-Yygc12/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.libraries/conftest -g -O /tmp/petsc-Yygc12/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.libraries/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -I/tmp/petsc-Yygc12/config.libraries -g -O /tmp/petsc-Yygc12/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.libraries/conftest -g -O /tmp/petsc-Yygc12/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.libraries/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -I/tmp/petsc-Yygc12/config.libraries -g -O /tmp/petsc-Yygc12/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.libraries/conftest -g -O /tmp/petsc-Yygc12/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.libraries/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -I/tmp/petsc-Yygc12/config.libraries -g -O /tmp/petsc-Yygc12/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.libraries/conftest -g -O /tmp/petsc-Yygc12/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status ============================================================================================= TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.libraries/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -I/tmp/petsc-Yygc12/config.libraries -g -O /tmp/petsc-Yygc12/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.libraries/conftest -g -O /tmp/petsc-Yygc12/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-Yygc12/config.libraries/conftest.o: undefined reference to symbol 'log10@@GLIBC_2.17' //usr/lib64/libm.so.6: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status Checking for functions [sin floor log10 pow] in library ['m'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.libraries/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -I/tmp/petsc-Yygc12/config.libraries -g -O /tmp/petsc-Yygc12/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.libraries/conftest -g -O /tmp/petsc-Yygc12/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" CheckMath: using math library ['libm.a'] ============================================================================================= TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library ['libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.libraries/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -I/tmp/petsc-Yygc12/config.libraries -g -O /tmp/petsc-Yygc12/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.libraries/conftest -g -O /tmp/petsc-Yygc12/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" erf() found Defined "HAVE_ERF" to "1" ============================================================================================= TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library ['libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.libraries/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -I/tmp/petsc-Yygc12/config.libraries -g -O /tmp/petsc-Yygc12/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.libraries/conftest -g -O /tmp/petsc-Yygc12/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" tgamma() found Defined "HAVE_TGAMMA" to "1" ============================================================================================= TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library ['libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.libraries/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -I/tmp/petsc-Yygc12/config.libraries -g -O /tmp/petsc-Yygc12/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.libraries/conftest -g -O /tmp/petsc-Yygc12/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" lgamma() found Defined "HAVE_LGAMMA" to "1" ============================================================================================= TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library ['libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.libraries/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -I/tmp/petsc-Yygc12/config.libraries -g -O /tmp/petsc-Yygc12/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.libraries/conftest -g -O /tmp/petsc-Yygc12/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" Defined "HAVE_FENV_H" to "1" ============================================================================================= TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library ['libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.libraries/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -I/tmp/petsc-Yygc12/config.libraries -g -O /tmp/petsc-Yygc12/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.libraries/conftest -g -O /tmp/petsc-Yygc12/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" log2() found Defined "HAVE_LOG2" to "1" ============================================================================================= TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.libraries/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -I/tmp/petsc-Yygc12/config.libraries -g -O /tmp/petsc-Yygc12/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.libraries/conftest -g -O /tmp/petsc-Yygc12/config.libraries/conftest.o -lstdc++ -ldl realtime functions are linked in by default ============================================================================================= TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-Yygc12/config.libraries/conftest.o -I/tmp/petsc-Yygc12/config.compilerFlags -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.compilers -I/tmp/petsc-Yygc12/config.utilities.closure -I/tmp/petsc-Yygc12/config.headers -I/tmp/petsc-Yygc12/config.utilities.cacheDetails -I/tmp/petsc-Yygc12/config.types -I/tmp/petsc-Yygc12/config.libraries -g -O /tmp/petsc-Yygc12/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Executing: mpicc -o /tmp/petsc-Yygc12/config.libraries/conftest -g -O /tmp/petsc-Yygc12/config.libraries/conftest.o -ldl -lstdc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-Yygc12/config.setCompilers -I/tmp/petsc-Yygc12/config.types -I/tmp/petsc-Yygc12/config.headers /tmp/petsc-Yygc12/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 5.041313 ============================================================================================= TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:38) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "HAVE_THREADSAFETY" to "1" **** Configure header /tmp/petsc-Yygc12/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CUDA_DIALECT_CXX11 1 #define PETSC_HAVE_CUDA_DIALECT_CXX14 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_THREADSAFETY 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 16 #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_VERSION_BRANCH_GIT "adams/landau-gpu-opt" #define PETSC_VERSION_DATE_GIT "2021-04-01 12:44:04 -0400" #define PETSC_VERSION_GIT "v3.15.0-23-gd252018" #endif **** C specific Configure header /tmp/petsc-Yygc12/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* CONFIGURATION CRASH (Please send configure.log to petsc-maint@mcs.anl.gov) ******************************************************************************* 'Configure' object has no attribute 'petsclib' File "/gpfs/alpine/csc314/scratch/adams/petsc/config/configure.py", line 458, in petsc_configure framework.configure(out = sys.stdout) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 1289, in configure self.processChildren() File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 1277, in processChildren self.serialEvaluation(self.childGraph) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 1252, in serialEvaluation child.configure() File "/gpfs/alpine/csc314/scratch/adams/petsc/config/PETSc/options/libraryOptions.py", line 120, in configure self.executeTest(self.configureLibraryOptions) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/base.py", line 138, in executeTest ret = test(*args,**kargs) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/PETSc/options/libraryOptions.py", line 50, in configureLibraryOptions if self.useThreadSafety and not ((self.sharedLibraries.useShared and self.setCompilers.dynamicLibraries) or self.petscConfigure.petsclib == '-lpetsc'): ================================================================================ Finishing configure run at Thu, 01 Apr 2021 13:25:56 -0400 ================================================================================