Executing: uname -s stdout: Darwin ================================================================================ ================================================================================ Starting configure run at Tue, 23 Mar 2021 09:36:26 -0400 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-mpi-dir=/usr/local/Cellar/mpich/3.4.1_1 COPTFLAGS="-g -O0" CXXOPTFLAGS="-g -O0" FOPTFLAGS="-g -O0 -fallow-argument-mismatch" --with-ctable=0 --with-fc=0 --download-metis=1 --download-parmetis=1 --download-viennacl --download-kokkos=1 --download-kokkos-kernels=1 --download-p4est=1 --with-zlib=1 --download-triangle=1 --download-hdf5=1 -with-cuda=0 --with-x=0 --with-debugging=1 PETSC_ARCH=arch-macosx-gnu-kokkos-g --with-64-bit-indices=0 --with-openmp=0 Working directory: /Users/markadams/Codes/petsc Machine platform: ('Darwin', 'MarksMac-302.local', '19.6.0', 'Darwin Kernel Version 19.6.0: Tue Jan 12 22:13:05 PST 2021; root:xnu-6153.141.16~1/RELEASE_X86_64', 'x86_64', 'i386') Python version: 2.7.18 |Anaconda, Inc.| (default, Apr 23 2020, 17:30:41) [GCC 4.2.1 Compatible Clang 4.0.1 (tags/RELEASE_401/final)] ================================================================================ Environmental variables CONDA_PYTHON_EXE=/Users/markadams/opt/miniconda2/bin/python GIT_PS1_SHOWDIRTYSTATE=1 XGC_PLATFORM=osx LC_TERMINAL_VERSION=3.3.9 TERM_SESSION_ID=w4t0p0:78B505B8-8C6D-4A4F-9366-F591E5F7239D TERM_PROGRAM_VERSION=3.3.9 CH_TIMER=FALSE CVS_RSH=ssh LOGNAME=markadams USER=markadams HOME=/Users/markadams PATH=/Users/markadams/opt/miniconda2/bin:/Users/markadams/opt/miniconda2/condabin:/Library/Frameworks/Python.framework/Versions/3.9/bin:/usr/local/opt/llvm/bin:/opt/anaconda2/bin:/usr/local/opt/texinfo/bin:/Users/markadams/homebrew/bin:/Users/markadams/homebrew/bin:/usr/local/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin:/Library/Apple/usr/bin:/usr/local/bin:. DBUS_LAUNCHD_SESSION_BUS_SOCKET=/private/tmp/com.apple.launchd.xHFTlFDG7F/unix_domain_listener TERM_PROGRAM=iTerm.app LANG=en_US.UTF-8 LC_TERMINAL=iTerm2 TERM=xterm-256color SHELL=/bin/bash COLORFGBG=0;15 H5PART_DIR=/Users/markadams/Codes/H5Part-1.6.6/build SHLVL=1 CONDA_PREFIX=/Users/markadams/opt/miniconda2 PWD=/Users/markadams/Codes/petsc XPC_FLAGS=0x0 CH_OUTPUT_INTERVAL=1000 GIT_PS1_SHOWUPSTREAM=auto ITERM_SESSION_ID=w4t0p0:78B505B8-8C6D-4A4F-9366-F591E5F7239D PETSC_DIR=/Users/markadams/Codes/petsc _=../arch-macosx-gnu-kokkos-g.py CONDA_DEFAULT_ENV=base SECURITYSESSIONID=186a9 SVN_EDITOR=vi ARCHFLAGS=-arch x86_64 _CE_CONDA= XPC_SERVICE_NAME=0 NETCDF_DIR=/Users/markadams/SFE/NETCDF_INSTALL SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.YJkVqQXUiu/Listeners CONDA_SHLVL=1 CONDA_PROMPT_MODIFIER=(base) XP_LICENSE_INTERFACE=en0 _CE_M= ITERM_PROFILE=Default DATAFILESPATH=/Users/markadams/matrices TMPDIR=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/ LaunchInstanceID=963BC69C-4E00-434E-94C7-242D3444A94A MACHINE=darwin DISPLAY=/private/tmp/com.apple.launchd.yYXuhXympA/org.xquartz:0 OLDPWD=/Users/markadams CH_TIMER_SAMPLE=60000 __CF_USER_TEXT_ENCODING=0x0:0:0 PETSC_ARCH=arch-macosx-gnu-g PIP_DOWNLOAD_CACHE=/Users/markadams/.pip/cache COLORTERM=truecolor SLEPC_DIR=/Users/markadams/Codes/slepc CONDA_EXE=/Users/markadams/opt/miniconda2/bin/conda COMMAND_MODE=unix2003 Files in path provided by default path /Users/markadams/opt/miniconda2/bin: tabs toe idle c_rehash python2-config infotocap cph 2to3 wish8.6 captoinfo easy_install pydoc python conda python2 pythonw python2.7-config tset wish reset f2py2.7 wheel tclsh8.6 python.app chardetect python-config clear f2py tclsh pip ncursesw6-config tic tqdm sqlite3 infocmp deactivate python2.7 activate f2py2 tput sqlite3_analyzer openssl conda-env smtpd.py /Users/markadams/opt/miniconda2/condabin: conda /Library/Frameworks/Python.framework/Versions/3.9/bin: pip3.9 2to3 python3 pip3 easy_install-3.9 idle3 python3.9-config python3.9 python3-config pydoc3.9 idle3.9 2to3-3.9 pydoc3 /usr/local/opt/llvm/bin: mlir-translate llvm-opt-report llvm-lipo modularize llvm-cxxdump clang-change-namespace verify-uselistorder llvm-cvtres llvm-strings clang-move llvm-install-name-tool clangd-xpc-test-client llvm-config clang llvm-lto2 llvm-cfi-verify llvm-cov lld llc llvm-link not llvm-symbolizer llvm-objdump mlir-cpu-runner clang-refactor clang-rename clangd llvm-mca set-xcode-analyzer llvm-rc clang-include-fixer llvm-addr2line llvm-jitlink llvm-xray clang-format lldb llvm-rtdyld FileCheck clang-check llvm-lto pp-trace llvm-c-test c-index-test llvm-dwp count llvm-reduce llvm-elfabi mlir-opt mlir-tblgen llvm-mc clang-reorder-fields llvm-exegesis llvm-readelf ld.lld llvm-as clang-query scan-build llvm-nm llvm-lib llvm-undname llvm-ml clang-offload-bundler lldb-argdumper lldb-server llvm-ar find-all-symbols clang-cl llvm-dis llvm-size dsymutil obj2yaml clang-tidy wasm-ld llvm-dlltool llvm-readobj llvm-cxxfilt bugpoint llvm-pdbutil clang-offload-wrapper clang-doc llvm-ifs lli llvm-PerfectShuffle llvm-tblgen mlir-linalg-ods-gen lli-child-target mlir-reduce clang-scan-deps clang++ sancov darwin-debug llvm-dwarfdump opt clang-cpp clang-11 clang-extdef-mapping yaml-bench llvm-cat git-clang-format llvm-profdata clang-apply-replacements llvm-objcopy llvm-extract yaml2obj sanstats llvm-split llvm-bcanalyzer lldb-instr hmaptool llvm-stress llvm-diff scan-view diagtool llvm-modextract llvm-gsymutil lld-link llvm-strip llvm-mt ld64.lld lldb-vscode llvm-ranlib llvm-cxxmap Warning accessing /opt/anaconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/anaconda2/bin' /usr/local/opt/texinfo/bin: texi2pdf pod2texi texindex info texi2dvi pdftexi2dvi texi2any makeinfo install-info Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' /usr/local/bin: ndmetis ppmtouil pstoedit lto-dump-10 qt-configure-module lzmainfo xwdtopnm ppmtorgb3 pamtohdiff pbmtoppa unzstd Assistant ccmake ppmtoyuvsplit qmake pip3.9 msgconv pbmtonokia leaftoppm g-ir-compiler event_rpcgen.py pnminvert sip-sdist pkg-config pbmpage pnmrotate bdftogd hwloc-compress-dir gen-enc-table pgmslice ppmshadow anytopnm asciitopgm qmlplugindump ppmtoppm pgmkernel tifftopnm fig2ps2tex Linguist msggrep pbmtoescp2 ppmcie libtool ddbugtopbm pgmhist rawtoppm tracegen webpng sndfile-cmp pnmcut aclocal pnmhistmap palmtopnm pamseq pcre2grep glpsol autopoint macdeployqt mpif90 fitstopnm pampick hwloc-bind pngtopam pzstd pambrighten ppmmix rcc g-ir-annotation-tool tificc pnmtofits pamrecolor pgmmake pamaltsat x86_64-apple-darwin19-gcc-ranlib-10 pbmtog3 qmlprofiler dbus-monitor gcc-ranlib-10 pbmtomrf pamtilt automake-1.14 pbmtodjvurle octave-cli octave-cli-6.2.0 h5copy xzdec tiffsplit pambayer ppmforge font2c sip-module pnmtosgi ppmtojpeg wheel3 luac5.4 mtvtoppm pamstretch lrelease-pro h52gif fax2tiff pamfunc pcdovtoppm linkicc rst2xetex.py msgcomm gdb git-receive-pack pnmnoraw h5perf_serial fc-list pnmpaste pamsharpness opj_compress GraphicsMagickWand-config ppmtoilbm balsam mpirun qmltestrunner gs-noX11 heif-enc lispmtopgm gtester ppmrainbow bjoentegaard lupdate pbmtopgm pnmtops pbmtocis autoscan callgrind_control gd2togif qmltime 411toppm orted gfortran opj_dump 2to3 pbmtoxbm fftwl-wisdom ppmfade pamperspective python3 proxy pnmtoddif wish8.6 pamfind ompi_info plot png-fix-itxt lua-5.4 gcov-dump-10 pamslice rst2latex.py gfortran-10 c++-10 pamsharpmap ppmtotga pbmtowbmp pgmenhance apm gnuplot pyrcc5 luac meshdebug jbigtopnm qml pgmtosbig cmake enc265 zstdless ppmflash opj_decompress tiffdump pamaddnoise h5unjam pbmtogem ppmspread ppmddumpfont fc-pattern ilbmtoppm shadergen sip-install pbmtox10bm pnmfile assimp aclocal-1.14 conda unxz ppmdmkfont mkoctfile-6.2.0 qvoronoi lrelease pbmtolps hwloc-distrib tiff2bw cg_merge pammasksharpen jiv atom freetype-config pip3 exrmultipart pgmnorm gr2fonttest qt-cmake-standalone-test sunicontopnm exrmultiview pcre2test gdbus-codegen fc-validate pamtopdbimg cjpeg teacup autom4te ppmchange h5stat cmpfillin aggregate_profile.pl escp2topbm jpegtran h5ls exrmaketiled clang-format lstopo pbmminkowski libpng16-config heif-info ompi-server yuvtoppm xzegrep qmltyperegistrar qt-internal-configure-tests gsettings VBoxManage pngfix zeisstopnm vagrant xmlto glib-compile-schemas webpmux pamscale pgmtopgm fc-query tiffcmp pnmtopng uic sip-build cameratopam pnmtojpeg pyuic6 gcov-tool-10 yuvsplittoppm rasttopnm exr2aces ppmtopjxl tiff2pdf pbmtoicon pbmreduce ppmdist pamsistoaglyph wish lupdate-pro pbmtozinc unlzma pgmtexture pbmto4425 ppmdim luac-5.4 pbmpscale ppmtopuzz ybmtopbm pbmtomgr pbmtopi3 hdifftopam pamexec ppmtowinicon pktopbm pgmtolispm x86_64-apple-darwin19-c++-10 fiascotopnm pamdepth update-mime-database VBoxHeadless qdbusxml2cpp hwloc-calc gif2h5 easy_install-3.9 pnmarith pjtoppm xzfgrep sirtopnm vgdb webpinfo gdtopng hwloc-info g-ir-generate h5jam libpng-config pnmscalefixed profile2mat.pl gdbm_dump pbmtomda fltk-config pamtompfont qmlimportscanner mkoctfile gobject-query brushtopbm dbus-launch pnmsmooth pnmenlarge brew pnmtopclxl fstopgm pgmdeshadow plotfont graph ppmtopi1 ppmdcfont h5cc bmptopnm pnminterp g3topbm cpp-10 pamgetcolor pbmtoascii pnmcrop pnmtopalm pamsplit pbmlife pamundice xpmtoppm rletopnm pngtogd2 x86_64-apple-darwin19-gcc-ar-10 msgen sgitopnm pbmtoepsi pylupdate6 sldtoppm tclsh8.6 qtattributionsscanner sndfile-metadata-set pnmflip eyuvtoppm autoupdate gs-X11 pnmtosir pambackground g-ir-inspect rst2odt_prepstyles.py manweb orte-clean pdbimgtopam jpeg2ktopam pnmtotiff pamshadedrelief git-upload-archive mdatopbm ppmtoeyuv ppmntsc djpeg gs-X11-Yosemite picttoppm giftopnm sndfile-salvage pnmindex pnmshear pnmtile annotate msgmerge pamtopnm fftwf-wisdom pamunlookup pamlevels tiffcrop gs-noX11-Yosemite neotoppm wbmptopbm pbmtobbnbg qmlformat h5mkgrp pamrgbatopng libtoolize rlatopam dbus-test-tool pgmramp m2gmetis pnmcomp pamtooctaveimg gio-querymodules mpif77 zstdgrep pamtohtmltbl pcdindex ppmtoneo fribidi ppmtosixel pnmtorast h5format_convert pnmhisteq gemtopbm idle3 cg_diff mpmetis python3.9-config gdcmpgif envsubst xz ppmdither pi1toppm pampaintspill spctoppm cairo-trace VirtualBox x86_64-apple-darwin19-gcc-nm-10 pbmtomatrixorbital gdparttopng mgrtopbm h5repack fluid ximtoppm glib-compile-resources python3.9 pamtogif ppmtoacad vboxwebsrv msginit mongoose rbox lua dbus-send pamdice macptopbm pamtosvg pbmtogo VBoxDTrace ppmtolj ppmtoxpm cg_annotate img2webp hwloc-ls pamstretch-gen pbmmask qdbusviewer ppmglobe tiffdither sputoppm mpicc cmuwmtopbm pelican-quickstart gcc-10 fftw-wisdom pngtopnm pamstereogram python3-config f2py qdelaunay tiffset tclsh pip pamflip pfmtopam avstopam orterun tgatoppm giftogd2 pbmtextps pango-view aomdec ppmpat pamtoxvmini hpcdtoppm h5watch dbus-daemon pi3topbm pbmtoepson pnmnorm ppmtobmp tiff2ps pnmtoxwd pamcrater pango-list sip-distinfo hb-ot-shape-closure qrttoppm heif-thumbnailer ppmtoarbtxt ppm3d fig2dev SophosUpdate hwloc-patch pamcomp h5c++ lzless cistopbm pamedge ode valgrind-listener qsb octave-config pbmtoatk f2py3.7 ppmtoterm vbox-img tiffinfo cairo-sphinx ppmdraw pnmconvol octave GraphicsMagick-config pgmoil gresource flac bioradtopgm psidtopgm heif-convert pamtopfm pamtojpeg2k pamwipeout pamsummcol jpegtopnm sndfile-concat hipstopgm ppmtopict graphchk gettext pnmcat gpmetis pgmminkowski gtester-report pc1toppm pgmabel atktopbm ppmtogif pbmclean ppmrelief gettext.sh ctest qdistancefieldgenerator pamfixtrunc epstool xzless pal2rgb zstd qtpaths VBoxBalloonCtrl exrmakepreview msgcmp opal_wrapper lzcmp pnmstitch pcre2-config gd2topng ppmtoicr lconvert orte-info pydoc3.9 pygmentize xzcat pamhue qmlcachegen mrftopbm spline metaflac pamthreshold autoreconf pamstack g-ir-scanner VBoxAutostart dbtoepub gcc-nm-10 pbmtocmuwm transicc exrstdattr sweep wrjpgcom mpicxx pnmtofiasco ppmquant g++-10 autoconf sndfile-deinterleave octave-6.2.0 pbmtoplot qconvex pbmmake pnmtotiffcmyk gcc-ar-10 orte-server pamtoavs pbmtosunicon qmllint androidtestrunner pamsumm pnmpsnr h5diff ppmtopgm msgcat aomenc pbmtopk zstdcat dbus-update-activation-environment pgmbentley autoheader hwloc-gather-cpuid pamendian imginfo rawtopgm Designer h5clear dbus-run-session psicc pcretest recode-sr-latin glib-gettextize xzcmp GraphicsMagick++-config pamtofits gm gouldtoppm lzcat double pnmtorle androiddeployqt pamoil pbmtoibm23xx jpgicc ompi-clean pgmmedian hwloc-diff yuv-distortion sndfile-info pammixinterlace pbmtopsg3 lstopo-no-graphics fc-cache ppmtopj pampop9 qlalr tclselect dbus-cleanup-sockets pnmremap hwloc-ps gdbus pcxtoppm zstdmt dbus-uuidgen fc-cat fftw-wisdom-to-conf callgrind_annotate ppmtospu git-cvsserver ppmcolors ppmtoleaf lzdiff h5redeploy idle3.9 pgmtost4 pnmtopnm pgmedge valgrind-di-server pamvalidate gdbmtool sbigtopgm msgexec rst2xml.py pelican-themes pyuic5 pamtotiff glib-genmarshal pcre-config ngettext git-clang-format ppmhist qhalf rst2odt.py winicontoppm git-shell h5debug pgmmorphconv pamlookup qvkgen gcov-10 dwebp x86_64-apple-darwin19-gcc-10.2.0 xbmtopbm pic2tpic ppmtoyuv ppmtomap texdistmgr pgmcrater ifnames pnmalias pnmcolormap pammixmulti pgmtopbm pixeltool qdbus pbmto10x x86_64-apple-darwin19-g++-10 ppmtopcx qhelpgenerator qmleasing qdbuscpp2xml gd2copypal ppmrough ppmmake x265 lzmadec fax2ps pnmmercator lua5.4 rgb3toppm fc-match pnmgamma infotopam h5repart lzgrep msgunfmt lprodump pnmtoplainpnm pamdeinterlace pamgradient h5import pnmsplit tiffcp lzmore xvminitoppm git-upload-pack pamfile h5fc mpiexec pnmnlfilt pamtouil pamtodjvurle pelican pgmtofs qtdiag pngtogd pnmmargin pamchannel pnmquantall syncqt.pl pbmtomacp f2py3 pbmtext sndfile-metadata-get pnmpad ppmwheel exrenvmap ppmlabel thinkjettopbm pnmquant pbmupc msgfilter winicontopam wftopfa pamtosrf pamditherbw cmake_automoc_parser pbmtoptx pgmnoise pbmtolj lzfgrep pamarith exrheader rst2pseudoxml.py fc-conflist qt-cmake-private glib-mkenums xzmore hersheydemo hb-view pnmdepth pammosaicknit ppmquantall cwebp sndfile-interleave sndfile-convert tiffmedian 2to3-3.9 ppmshift yuy2topam mpic++ pamenlarge sip-wheel xzgrep mpifort pamgauss rst2s5.py pydoc3 pamtotga hb-shape valgrind pbmtoln03 pstopnm ppmtompeg svgtopam rst2html.py lzma qtplugininfo rst2man.py gdbm_load ortecc qmlscene pamcut jasper gemtopnm pbmtoybm spottopgm pamfix pic2plot qmlpreview st4topgm sndfile-play srftopam pnmmontage x86_64-apple-darwin19-gfortran-10 octave-config-6.2.0 pylupdate5 rdjpgcom ppmbrighten automake tek2plot icontopbm lzegrep moc git cpack rd-curves raw2tiff pamtris transfig msgfmt ppmtoapplevol pgmtoppm ppm2tiff rstpep2html.py xzdiff msgattrib imgcmp pcregrep tiff2rgba x86_64-apple-darwin19-gcc-10 pamtopam pamrubber pamtowinicon ppmtoascii xgettext hb-subset ppmtv ppmtomitsu imgtoppm gio hwloc-annotate qt-cmake xmlif pamtopng ppmnorm ppmcolormask pamtable pnmscale h5dump .keepme ms_print fc-scan gettextize pelican-import VBoxVRDP msguniq bmptoppm pnmtojbig qhull /usr/local/bin: ndmetis ppmtouil pstoedit lto-dump-10 qt-configure-module lzmainfo xwdtopnm ppmtorgb3 pamtohdiff pbmtoppa unzstd Assistant ccmake ppmtoyuvsplit qmake pip3.9 msgconv pbmtonokia leaftoppm g-ir-compiler event_rpcgen.py pnminvert sip-sdist pkg-config pbmpage pnmrotate bdftogd hwloc-compress-dir gen-enc-table pgmslice ppmshadow anytopnm asciitopgm qmlplugindump ppmtoppm pgmkernel tifftopnm fig2ps2tex Linguist msggrep pbmtoescp2 ppmcie libtool ddbugtopbm pgmhist rawtoppm tracegen webpng sndfile-cmp pnmcut aclocal pnmhistmap palmtopnm pamseq pcre2grep glpsol autopoint macdeployqt mpif90 fitstopnm pampick hwloc-bind pngtopam pzstd pambrighten ppmmix rcc g-ir-annotation-tool tificc pnmtofits pamrecolor pgmmake pamaltsat x86_64-apple-darwin19-gcc-ranlib-10 pbmtog3 qmlprofiler dbus-monitor gcc-ranlib-10 pbmtomrf pamtilt automake-1.14 pbmtodjvurle octave-cli octave-cli-6.2.0 h5copy xzdec tiffsplit pambayer ppmforge font2c sip-module pnmtosgi ppmtojpeg wheel3 luac5.4 mtvtoppm pamstretch lrelease-pro h52gif fax2tiff pamfunc pcdovtoppm linkicc rst2xetex.py msgcomm gdb git-receive-pack pnmnoraw h5perf_serial fc-list pnmpaste pamsharpness opj_compress GraphicsMagickWand-config ppmtoilbm balsam mpirun qmltestrunner gs-noX11 heif-enc lispmtopgm gtester ppmrainbow bjoentegaard lupdate pbmtopgm pnmtops pbmtocis autoscan callgrind_control gd2togif qmltime 411toppm orted gfortran opj_dump 2to3 pbmtoxbm fftwl-wisdom ppmfade pamperspective python3 proxy pnmtoddif wish8.6 pamfind ompi_info plot png-fix-itxt lua-5.4 gcov-dump-10 pamslice rst2latex.py gfortran-10 c++-10 pamsharpmap ppmtotga pbmtowbmp pgmenhance apm gnuplot pyrcc5 luac meshdebug jbigtopnm qml pgmtosbig cmake enc265 zstdless ppmflash opj_decompress tiffdump pamaddnoise h5unjam pbmtogem ppmspread ppmddumpfont fc-pattern ilbmtoppm shadergen sip-install pbmtox10bm pnmfile assimp aclocal-1.14 conda unxz ppmdmkfont mkoctfile-6.2.0 qvoronoi lrelease pbmtolps hwloc-distrib tiff2bw cg_merge pammasksharpen jiv atom freetype-config pip3 exrmultipart pgmnorm gr2fonttest qt-cmake-standalone-test sunicontopnm exrmultiview pcre2test gdbus-codegen fc-validate pamtopdbimg cjpeg teacup autom4te ppmchange h5stat cmpfillin aggregate_profile.pl escp2topbm jpegtran h5ls exrmaketiled clang-format lstopo pbmminkowski libpng16-config heif-info ompi-server yuvtoppm xzegrep qmltyperegistrar qt-internal-configure-tests gsettings VBoxManage pngfix zeisstopnm vagrant xmlto glib-compile-schemas webpmux pamscale pgmtopgm fc-query tiffcmp pnmtopng uic sip-build cameratopam pnmtojpeg pyuic6 gcov-tool-10 yuvsplittoppm rasttopnm exr2aces ppmtopjxl tiff2pdf pbmtoicon pbmreduce ppmdist pamsistoaglyph wish lupdate-pro pbmtozinc unlzma pgmtexture pbmto4425 ppmdim luac-5.4 pbmpscale ppmtopuzz ybmtopbm pbmtomgr pbmtopi3 hdifftopam pamexec ppmtowinicon pktopbm pgmtolispm x86_64-apple-darwin19-c++-10 fiascotopnm pamdepth update-mime-database VBoxHeadless qdbusxml2cpp hwloc-calc gif2h5 easy_install-3.9 pnmarith pjtoppm xzfgrep sirtopnm vgdb webpinfo gdtopng hwloc-info g-ir-generate h5jam libpng-config pnmscalefixed profile2mat.pl gdbm_dump pbmtomda fltk-config pamtompfont qmlimportscanner mkoctfile gobject-query brushtopbm dbus-launch pnmsmooth pnmenlarge brew pnmtopclxl fstopgm pgmdeshadow plotfont graph ppmtopi1 ppmdcfont h5cc bmptopnm pnminterp g3topbm cpp-10 pamgetcolor pbmtoascii pnmcrop pnmtopalm pamsplit pbmlife pamundice xpmtoppm rletopnm pngtogd2 x86_64-apple-darwin19-gcc-ar-10 msgen sgitopnm pbmtoepsi pylupdate6 sldtoppm tclsh8.6 qtattributionsscanner sndfile-metadata-set pnmflip eyuvtoppm autoupdate gs-X11 pnmtosir pambackground g-ir-inspect rst2odt_prepstyles.py manweb orte-clean pdbimgtopam jpeg2ktopam pnmtotiff pamshadedrelief git-upload-archive mdatopbm ppmtoeyuv ppmntsc djpeg gs-X11-Yosemite picttoppm giftopnm sndfile-salvage pnmindex pnmshear pnmtile annotate msgmerge pamtopnm fftwf-wisdom pamunlookup pamlevels tiffcrop gs-noX11-Yosemite neotoppm wbmptopbm pbmtobbnbg qmlformat h5mkgrp pamrgbatopng libtoolize rlatopam dbus-test-tool pgmramp m2gmetis pnmcomp pamtooctaveimg gio-querymodules mpif77 zstdgrep pamtohtmltbl pcdindex ppmtoneo fribidi ppmtosixel pnmtorast h5format_convert pnmhisteq gemtopbm idle3 cg_diff mpmetis python3.9-config gdcmpgif envsubst xz ppmdither pi1toppm pampaintspill spctoppm cairo-trace VirtualBox x86_64-apple-darwin19-gcc-nm-10 pbmtomatrixorbital gdparttopng mgrtopbm h5repack fluid ximtoppm glib-compile-resources python3.9 pamtogif ppmtoacad vboxwebsrv msginit mongoose rbox lua dbus-send pamdice macptopbm pamtosvg pbmtogo VBoxDTrace ppmtolj ppmtoxpm cg_annotate img2webp hwloc-ls pamstretch-gen pbmmask qdbusviewer ppmglobe tiffdither sputoppm mpicc cmuwmtopbm pelican-quickstart gcc-10 fftw-wisdom pngtopnm pamstereogram python3-config f2py qdelaunay tiffset tclsh pip pamflip pfmtopam avstopam orterun tgatoppm giftogd2 pbmtextps pango-view aomdec ppmpat pamtoxvmini hpcdtoppm h5watch dbus-daemon pi3topbm pbmtoepson pnmnorm ppmtobmp tiff2ps pnmtoxwd pamcrater pango-list sip-distinfo hb-ot-shape-closure qrttoppm heif-thumbnailer ppmtoarbtxt ppm3d fig2dev SophosUpdate hwloc-patch pamcomp h5c++ lzless cistopbm pamedge ode valgrind-listener qsb octave-config pbmtoatk f2py3.7 ppmtoterm vbox-img tiffinfo cairo-sphinx ppmdraw pnmconvol octave GraphicsMagick-config pgmoil gresource flac bioradtopgm psidtopgm heif-convert pamtopfm pamtojpeg2k pamwipeout pamsummcol jpegtopnm sndfile-concat hipstopgm ppmtopict graphchk gettext pnmcat gpmetis pgmminkowski gtester-report pc1toppm pgmabel atktopbm ppmtogif pbmclean ppmrelief gettext.sh ctest qdistancefieldgenerator pamfixtrunc epstool xzless pal2rgb zstd qtpaths VBoxBalloonCtrl exrmakepreview msgcmp opal_wrapper lzcmp pnmstitch pcre2-config gd2topng ppmtoicr lconvert orte-info pydoc3.9 pygmentize xzcat pamhue qmlcachegen mrftopbm spline 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lzdiff h5redeploy idle3.9 pgmtost4 pnmtopnm pgmedge valgrind-di-server pamvalidate gdbmtool sbigtopgm msgexec rst2xml.py pelican-themes pyuic5 pamtotiff glib-genmarshal pcre-config ngettext git-clang-format ppmhist qhalf rst2odt.py winicontoppm git-shell h5debug pgmmorphconv pamlookup qvkgen gcov-10 dwebp x86_64-apple-darwin19-gcc-10.2.0 xbmtopbm pic2tpic ppmtoyuv ppmtomap texdistmgr pgmcrater ifnames pnmalias pnmcolormap pammixmulti pgmtopbm pixeltool qdbus pbmto10x x86_64-apple-darwin19-g++-10 ppmtopcx qhelpgenerator qmleasing qdbuscpp2xml gd2copypal ppmrough ppmmake x265 lzmadec fax2ps pnmmercator lua5.4 rgb3toppm fc-match pnmgamma infotopam h5repart lzgrep msgunfmt lprodump pnmtoplainpnm pamdeinterlace pamgradient h5import pnmsplit tiffcp lzmore xvminitoppm git-upload-pack pamfile h5fc mpiexec pnmnlfilt pamtouil pamtodjvurle pelican pgmtofs qtdiag pngtogd pnmmargin pamchannel pnmquantall syncqt.pl pbmtomacp f2py3 pbmtext sndfile-metadata-get pnmpad ppmwheel exrenvmap ppmlabel 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ot2kpx allcm pk2bm dvitomp texindy vpl2vpl luatools cef5latex ctwill-refsort luajithbtex bg5+pdflatex dvisvgm tex2aspc bg5conv deweb tlcockpit cfftot1 dviselect odvitype vpl2ovp otp2ocp latexdiff dt2dv bg5pdflatex mf2pt1 psresize t1mac epspdf pythontex bibtexu authorindex texosquery tlshell pdfxmltex includeres t1ascii pdflatexpicscale mfluajit axohelp tangle httex texosquery-jre8 checkcites bibtex8 dvi2fax otftotfm cefspdflatex mmpfb pfb2pfa vpe psselect latex-dev findhyph gregorio ovp2ovf utf8mex mflua purifyeps autosp bundledoc mllatex tex4ebook xdvi-xaw sjislatex rungs dvilj4 ltxfileinfo texconfig updvitype ltximg updmap-user dvips convertgls2bib latex2nemeth pdfjam epstopdf outocp pedigree mkocp kpsereadlink ttf2pk tpic2pdftex kanji-config-updmap-user psjoin m-tx uppltotf texdoc bbox dvired latex-papersize makeglossaries-lite t4ht xdvi ps2frag wopl2ofm devnag ctanupload texexec listbib cllualatex lualatex pmxab jfmutil pdfmex tftopl mltex amstex pbibtex pstops optex mex bibdoiadd updmap dvipos luaotfload-tool epspdftk updmap-sys r-upmpost mktextfm texfot checklistings rpdfcrop a5toa4 installfont-tl pdfcrop pdfannotextractor /opt/X11/bin: xfs xfsinfo atobm xdpyinfo showrgb xlsfonts editres fonttosfnt xfontsel xclock xmore xman xmag xrefresh fc-list xdmshell xauth twm cxpm mkfontdir xclipboard png-fix-itxt beforelight ucs2any xterm bdftruncate xsetroot xmessage xcursorgen fc-pattern xkbvleds xkbbell freetype-config Xephyr fc-validate bitmap libpng16-config pngfix fc-query xkbprint luit xhost gtf listres x11perf Xorg libpng-config koi8rxterm xpr xstdcmap xgc mkfontscale setxkbmap xinit Xquartz xbacklight xdm xcmsdb xdpr xfindproxy xrdb xlsclients xprop xkeystone xeyes Xvfb Xnest xev startx xkbwatch xscope xfd sessreg xwud lndir xinput xconsole glxinfo sxpm xsetmode Xfake fslsfonts xcompmgr xrandr bmtoa xwd xmodmap glxgears fc-cache iceauth cvt xcutsel bdftopcf fc-cat xsetpointer xkbevd quartz-wm xsm appres xset xlsatoms fc-match oclock x11perfcomp resize showfont xditview xwininfo xvinfo xcalc fc-conflist xgamma makedepend viewres ico X gccmakedep xedit smproxy xkill xkbcomp xload font_cache xmh xlogo fstobdf uxterm fc-scan /Library/Apple/usr/bin: rvictl /usr/local/bin: ndmetis ppmtouil pstoedit lto-dump-10 qt-configure-module lzmainfo xwdtopnm ppmtorgb3 pamtohdiff pbmtoppa unzstd Assistant ccmake ppmtoyuvsplit qmake pip3.9 msgconv pbmtonokia leaftoppm g-ir-compiler event_rpcgen.py pnminvert sip-sdist pkg-config pbmpage pnmrotate bdftogd hwloc-compress-dir gen-enc-table pgmslice ppmshadow anytopnm asciitopgm qmlplugindump ppmtoppm pgmkernel tifftopnm fig2ps2tex Linguist msggrep pbmtoescp2 ppmcie libtool ddbugtopbm pgmhist rawtoppm tracegen webpng sndfile-cmp pnmcut aclocal pnmhistmap palmtopnm pamseq pcre2grep glpsol autopoint macdeployqt mpif90 fitstopnm pampick hwloc-bind pngtopam pzstd pambrighten ppmmix rcc g-ir-annotation-tool tificc pnmtofits pamrecolor pgmmake pamaltsat x86_64-apple-darwin19-gcc-ranlib-10 pbmtog3 qmlprofiler dbus-monitor gcc-ranlib-10 pbmtomrf pamtilt automake-1.14 pbmtodjvurle octave-cli octave-cli-6.2.0 h5copy xzdec tiffsplit pambayer ppmforge font2c sip-module pnmtosgi ppmtojpeg wheel3 luac5.4 mtvtoppm pamstretch lrelease-pro h52gif fax2tiff pamfunc pcdovtoppm linkicc rst2xetex.py msgcomm gdb git-receive-pack pnmnoraw h5perf_serial fc-list pnmpaste pamsharpness opj_compress GraphicsMagickWand-config ppmtoilbm balsam mpirun qmltestrunner gs-noX11 heif-enc lispmtopgm gtester ppmrainbow bjoentegaard lupdate pbmtopgm pnmtops pbmtocis autoscan callgrind_control gd2togif qmltime 411toppm orted gfortran opj_dump 2to3 pbmtoxbm fftwl-wisdom ppmfade pamperspective python3 proxy pnmtoddif wish8.6 pamfind ompi_info plot png-fix-itxt lua-5.4 gcov-dump-10 pamslice rst2latex.py gfortran-10 c++-10 pamsharpmap ppmtotga pbmtowbmp pgmenhance apm gnuplot pyrcc5 luac meshdebug jbigtopnm qml pgmtosbig cmake enc265 zstdless ppmflash opj_decompress tiffdump pamaddnoise h5unjam pbmtogem ppmspread ppmddumpfont fc-pattern ilbmtoppm shadergen sip-install pbmtox10bm pnmfile assimp aclocal-1.14 conda unxz ppmdmkfont mkoctfile-6.2.0 qvoronoi lrelease pbmtolps hwloc-distrib tiff2bw cg_merge pammasksharpen jiv atom freetype-config pip3 exrmultipart pgmnorm gr2fonttest qt-cmake-standalone-test sunicontopnm exrmultiview pcre2test gdbus-codegen fc-validate pamtopdbimg cjpeg teacup autom4te ppmchange h5stat cmpfillin aggregate_profile.pl escp2topbm jpegtran h5ls exrmaketiled clang-format lstopo pbmminkowski libpng16-config heif-info ompi-server yuvtoppm xzegrep qmltyperegistrar qt-internal-configure-tests gsettings VBoxManage pngfix zeisstopnm vagrant xmlto glib-compile-schemas webpmux pamscale pgmtopgm fc-query tiffcmp pnmtopng uic sip-build cameratopam pnmtojpeg pyuic6 gcov-tool-10 yuvsplittoppm rasttopnm exr2aces ppmtopjxl tiff2pdf pbmtoicon pbmreduce ppmdist pamsistoaglyph wish lupdate-pro pbmtozinc unlzma pgmtexture pbmto4425 ppmdim luac-5.4 pbmpscale ppmtopuzz ybmtopbm pbmtomgr pbmtopi3 hdifftopam pamexec ppmtowinicon pktopbm pgmtolispm x86_64-apple-darwin19-c++-10 fiascotopnm pamdepth update-mime-database VBoxHeadless qdbusxml2cpp hwloc-calc gif2h5 easy_install-3.9 pnmarith pjtoppm xzfgrep sirtopnm vgdb webpinfo gdtopng hwloc-info g-ir-generate h5jam libpng-config pnmscalefixed profile2mat.pl gdbm_dump pbmtomda fltk-config pamtompfont qmlimportscanner mkoctfile gobject-query brushtopbm dbus-launch pnmsmooth pnmenlarge brew pnmtopclxl fstopgm pgmdeshadow plotfont graph ppmtopi1 ppmdcfont h5cc bmptopnm pnminterp g3topbm cpp-10 pamgetcolor pbmtoascii pnmcrop pnmtopalm pamsplit pbmlife pamundice xpmtoppm rletopnm pngtogd2 x86_64-apple-darwin19-gcc-ar-10 msgen sgitopnm pbmtoepsi pylupdate6 sldtoppm tclsh8.6 qtattributionsscanner sndfile-metadata-set pnmflip eyuvtoppm autoupdate gs-X11 pnmtosir pambackground g-ir-inspect rst2odt_prepstyles.py manweb orte-clean pdbimgtopam jpeg2ktopam pnmtotiff pamshadedrelief git-upload-archive mdatopbm ppmtoeyuv ppmntsc djpeg gs-X11-Yosemite picttoppm giftopnm sndfile-salvage pnmindex pnmshear pnmtile annotate msgmerge pamtopnm fftwf-wisdom pamunlookup pamlevels tiffcrop gs-noX11-Yosemite neotoppm wbmptopbm pbmtobbnbg qmlformat h5mkgrp pamrgbatopng libtoolize rlatopam dbus-test-tool pgmramp m2gmetis pnmcomp pamtooctaveimg gio-querymodules mpif77 zstdgrep pamtohtmltbl pcdindex ppmtoneo fribidi ppmtosixel pnmtorast h5format_convert pnmhisteq gemtopbm idle3 cg_diff mpmetis python3.9-config gdcmpgif envsubst xz ppmdither pi1toppm pampaintspill spctoppm cairo-trace VirtualBox x86_64-apple-darwin19-gcc-nm-10 pbmtomatrixorbital gdparttopng mgrtopbm h5repack fluid ximtoppm glib-compile-resources python3.9 pamtogif ppmtoacad vboxwebsrv msginit mongoose rbox lua dbus-send pamdice macptopbm pamtosvg pbmtogo VBoxDTrace ppmtolj ppmtoxpm cg_annotate img2webp hwloc-ls pamstretch-gen pbmmask qdbusviewer ppmglobe tiffdither sputoppm mpicc cmuwmtopbm pelican-quickstart gcc-10 fftw-wisdom pngtopnm pamstereogram python3-config f2py qdelaunay tiffset tclsh pip pamflip pfmtopam avstopam orterun tgatoppm giftogd2 pbmtextps pango-view aomdec ppmpat pamtoxvmini hpcdtoppm h5watch dbus-daemon pi3topbm pbmtoepson pnmnorm ppmtobmp tiff2ps pnmtoxwd pamcrater pango-list sip-distinfo hb-ot-shape-closure qrttoppm heif-thumbnailer ppmtoarbtxt ppm3d fig2dev SophosUpdate hwloc-patch pamcomp h5c++ lzless cistopbm pamedge ode valgrind-listener qsb octave-config pbmtoatk f2py3.7 ppmtoterm vbox-img tiffinfo cairo-sphinx ppmdraw pnmconvol octave GraphicsMagick-config pgmoil gresource flac bioradtopgm psidtopgm heif-convert pamtopfm pamtojpeg2k pamwipeout pamsummcol jpegtopnm sndfile-concat hipstopgm ppmtopict graphchk gettext pnmcat gpmetis pgmminkowski gtester-report pc1toppm pgmabel atktopbm ppmtogif pbmclean ppmrelief gettext.sh ctest qdistancefieldgenerator pamfixtrunc epstool xzless pal2rgb zstd qtpaths VBoxBalloonCtrl exrmakepreview msgcmp opal_wrapper lzcmp pnmstitch pcre2-config gd2topng ppmtoicr lconvert orte-info pydoc3.9 pygmentize xzcat pamhue qmlcachegen mrftopbm spline metaflac pamthreshold autoreconf pamstack g-ir-scanner VBoxAutostart dbtoepub gcc-nm-10 pbmtocmuwm transicc exrstdattr sweep wrjpgcom mpicxx pnmtofiasco ppmquant g++-10 autoconf sndfile-deinterleave octave-6.2.0 pbmtoplot qconvex pbmmake pnmtotiffcmyk gcc-ar-10 orte-server pamtoavs pbmtosunicon qmllint androidtestrunner pamsumm pnmpsnr h5diff ppmtopgm msgcat aomenc pbmtopk zstdcat dbus-update-activation-environment pgmbentley autoheader hwloc-gather-cpuid pamendian imginfo rawtopgm Designer h5clear dbus-run-session psicc pcretest recode-sr-latin glib-gettextize xzcmp GraphicsMagick++-config pamtofits gm gouldtoppm lzcat double pnmtorle androiddeployqt pamoil pbmtoibm23xx jpgicc ompi-clean pgmmedian hwloc-diff yuv-distortion sndfile-info pammixinterlace pbmtopsg3 lstopo-no-graphics fc-cache ppmtopj pampop9 qlalr tclselect dbus-cleanup-sockets pnmremap hwloc-ps gdbus pcxtoppm zstdmt dbus-uuidgen fc-cat fftw-wisdom-to-conf callgrind_annotate ppmtospu git-cvsserver ppmcolors ppmtoleaf lzdiff h5redeploy idle3.9 pgmtost4 pnmtopnm pgmedge valgrind-di-server pamvalidate gdbmtool sbigtopgm msgexec rst2xml.py pelican-themes pyuic5 pamtotiff glib-genmarshal pcre-config ngettext git-clang-format ppmhist qhalf rst2odt.py winicontoppm git-shell h5debug pgmmorphconv pamlookup qvkgen gcov-10 dwebp x86_64-apple-darwin19-gcc-10.2.0 xbmtopbm pic2tpic ppmtoyuv ppmtomap texdistmgr pgmcrater ifnames pnmalias pnmcolormap pammixmulti pgmtopbm pixeltool qdbus pbmto10x x86_64-apple-darwin19-g++-10 ppmtopcx qhelpgenerator qmleasing qdbuscpp2xml gd2copypal ppmrough ppmmake x265 lzmadec fax2ps pnmmercator lua5.4 rgb3toppm fc-match pnmgamma infotopam h5repart lzgrep msgunfmt lprodump pnmtoplainpnm pamdeinterlace pamgradient h5import pnmsplit tiffcp lzmore xvminitoppm git-upload-pack pamfile h5fc mpiexec pnmnlfilt pamtouil pamtodjvurle pelican pgmtofs qtdiag pngtogd pnmmargin pamchannel pnmquantall syncqt.pl pbmtomacp f2py3 pbmtext sndfile-metadata-get pnmpad ppmwheel exrenvmap ppmlabel thinkjettopbm pnmquant pbmupc msgfilter winicontopam wftopfa pamtosrf pamditherbw cmake_automoc_parser pbmtoptx pgmnoise pbmtolj lzfgrep pamarith exrheader rst2pseudoxml.py fc-conflist qt-cmake-private glib-mkenums xzmore hersheydemo hb-view pnmdepth pammosaicknit ppmquantall cwebp sndfile-interleave sndfile-convert tiffmedian 2to3-3.9 ppmshift yuy2topam mpic++ pamenlarge sip-wheel xzgrep mpifort pamgauss rst2s5.py pydoc3 pamtotga hb-shape valgrind pbmtoln03 pstopnm ppmtompeg svgtopam rst2html.py lzma qtplugininfo rst2man.py gdbm_load ortecc qmlscene pamcut jasper gemtopnm pbmtoybm spottopgm pamfix pic2plot qmlpreview st4topgm sndfile-play srftopam pnmmontage x86_64-apple-darwin19-gfortran-10 octave-config-6.2.0 pylupdate5 rdjpgcom ppmbrighten automake tek2plot icontopbm lzegrep moc git cpack rd-curves raw2tiff pamtris transfig msgfmt ppmtoapplevol pgmtoppm ppm2tiff rstpep2html.py xzdiff msgattrib imgcmp pcregrep tiff2rgba x86_64-apple-darwin19-gcc-10 pamtopam pamrubber pamtowinicon ppmtoascii xgettext hb-subset ppmtv ppmtomitsu imgtoppm gio hwloc-annotate qt-cmake xmlif pamtopng ppmnorm ppmcolormask pamtable pnmscale h5dump .keepme ms_print fc-scan gettextize pelican-import VBoxVRDP msguniq bmptoppm pnmtojbig qhull .: CODE_OF_CONDUCT.md GNUmakefile .hypre_license gmakefile .dir-locals.el .gitlab LICENSE RDict.log RDict.log.bkp configure config petscdir.mk makefile configure.log CONTRIBUTING include configure.log.bkp .readthedocs.yml arch-macosx-gnu-kokkos-g README.md setup.py .chaco_license .gitignore .gitlab-alcf-ci.yml lib .gitlab-ci.yml .gitmessage arch-macosx-gnu-g .mailmap .git systems arch-macosx-gnu-O arch-macosx-gnu-O-3d make.log .travis.yml interfaces share gmakefile.test src ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:965) child config.utilities.macosFirewall 0.000099 ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking for program /Users/markadams/opt/miniconda2/bin/lldb...not found Checking for program /Users/markadams/opt/miniconda2/condabin/lldb...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/lldb...not found Checking for program /usr/local/opt/llvm/bin/lldb...found Defined make macro "LLDB" to "/usr/local/opt/llvm/bin/lldb" Defined "USE_DEBUGGER" to ""lldb"" Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking for program /Users/markadams/opt/miniconda2/bin/dsymutil...not found Checking for program /Users/markadams/opt/miniconda2/condabin/dsymutil...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/dsymutil...not found Checking for program /usr/local/opt/llvm/bin/dsymutil...found Defined make macro "DSYMUTIL" to "/usr/local/opt/llvm/bin/dsymutil" Defined make macro "DSYMUTIL" to "/usr/local/opt/llvm/bin/dsymutil" Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Defined "DO_NOT_SWAP_CHILD_FOR_DEBUGGER" to "1" child config.utilities.debuggers 0.022352 ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 14 #define PETSC_VERSION_SUBMINOR 5 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.003088 ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000897 ============================================================================================= TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /Users/markadams/opt/miniconda2/bin/git...not found Checking for program /Users/markadams/opt/miniconda2/condabin/git...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/git...not found Checking for program /usr/local/opt/llvm/bin/git...not found Checking for program /opt/anaconda2/bin/git...not found Checking for program /usr/local/opt/texinfo/bin/git...not found Checking for program /Users/markadams/homebrew/bin/git...not found Checking for program /Users/markadams/homebrew/bin/git...not found Checking for program /usr/local/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.31.0 ============================================================================================= TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /Users/markadams/opt/miniconda2/bin/hg...not found Checking for program /Users/markadams/opt/miniconda2/condabin/hg...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/hg...not found Checking for program /usr/local/opt/llvm/bin/hg...not found Checking for program /opt/anaconda2/bin/hg...not found Checking for program /usr/local/opt/texinfo/bin/hg...not found Checking for program /Users/markadams/homebrew/bin/hg...not found Checking for program /Users/markadams/homebrew/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /sbin/hg...not found Checking for program /Library/TeX/texbin/hg...not found Checking for program /opt/X11/bin/hg...not found Checking for program /Library/Apple/usr/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program ./hg...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/hg...not found child config.sourceControl 0.012360 ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.14.5-868-g428b46273f Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 428b46273f5c4b5db13796f24bb59fb379d3c2f6 Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2021-03-22 17:32:58 -0400 Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD'] stdout: adams/landau-gpu-opt Defined "VERSION_GIT" to ""v3.14.5-868-g428b46273f"" Defined "VERSION_DATE_GIT" to ""2021-03-22 17:32:58 -0400"" Defined "VERSION_BRANCH_GIT" to ""adams/landau-gpu-opt"" child PETSc.options.petscclone 0.220998 ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set ============================================================================================= Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-macosx-gnu-kokkos-g, ignoring environment: arch-macosx-gnu-g ============================================================================================= No previous hashfile found Setting hashfile: arch-macosx-gnu-kokkos-g/lib/petsc/conf/configure-hash Deleting configure hash file: arch-macosx-gnu-kokkos-g/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-macosx-gnu-kokkos-g/lib/petsc/conf/configure-hash child PETSc.options.arch 0.048179 ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:39) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:85) ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:78) ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:62) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:98) child PETSc.options.installDir 0.001589 ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000532 ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.000673 ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1945) ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1975) ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1915) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1936) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:526) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPFLAGS to Initialized HIPFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to -Wno-deprecated-gpu-targets Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:701) Locate a functional C compiler Checking for program /usr/local/Cellar/mpich/3.4.1_1/bin/mpiicc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/mpiicc...not found Unable to find programs ['mpiicc'] providing listing of the specific search path Warning accessing /usr/local/Cellar/mpich/3.4.1_1/bin gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Checking for program /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc...found Defined make macro "CC" to "/usr/local/Cellar/mpich/3.4.1_1/bin/mpicc" ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang-11: error: linker command failed with exit code 1 (use -v to see invocation) ======== Checking running linked program ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc --version stdout: clang version 11.1.0 Target: x86_64-apple-darwin19.6.0 Thread model: posix InstalledDir: /usr/local/opt/llvm/bin Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:740) Locate a functional C preprocessor Checking for program /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc...found Defined make macro "CPP" to "/usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:776) Locate a functional CUDA compiler Checking for program /Users/markadams/opt/miniconda2/bin/nvcc...not found Checking for program /Users/markadams/opt/miniconda2/condabin/nvcc...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/nvcc...not found Checking for program /usr/local/opt/llvm/bin/nvcc...not found Checking for program /opt/anaconda2/bin/nvcc...not found Checking for program /usr/local/opt/texinfo/bin/nvcc...not found Checking for program /Users/markadams/homebrew/bin/nvcc...not found Checking for program /Users/markadams/homebrew/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /Library/TeX/texbin/nvcc...not found Checking for program /opt/X11/bin/nvcc...not found Checking for program /Library/Apple/usr/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program ./nvcc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/nvcc...not found Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of the specific search path Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of the specific search path Warning accessing /usr/local/cuda/bin gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects ============================================================================================= TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:816) Locate a functional CUDA preprocessor ============================================================================================= TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:850) Locate a functional HIP compiler Checking for program /Users/markadams/opt/miniconda2/bin/hipcc...not found Checking for program /Users/markadams/opt/miniconda2/condabin/hipcc...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/hipcc...not found Checking for program /usr/local/opt/llvm/bin/hipcc...not found Checking for program /opt/anaconda2/bin/hipcc...not found Checking for program /usr/local/opt/texinfo/bin/hipcc...not found Checking for program /Users/markadams/homebrew/bin/hipcc...not found Checking for program /Users/markadams/homebrew/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /bin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /sbin/hipcc...not found Checking for program /Library/TeX/texbin/hipcc...not found Checking for program /opt/X11/bin/hipcc...not found Checking for program /Library/Apple/usr/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program ./hipcc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/hipcc...not found Checking for program /Users/markadams/opt/miniconda2/bin/opt/rocm/bin/hipcc...not found Checking for program /Users/markadams/opt/miniconda2/condabin/opt/rocm/bin/hipcc...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/opt/llvm/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/anaconda2/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/opt/texinfo/bin/opt/rocm/bin/hipcc...not found Checking for program /Users/markadams/homebrew/bin/opt/rocm/bin/hipcc...not found Checking for program /Users/markadams/homebrew/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /bin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /sbin/opt/rocm/bin/hipcc...not found Checking for program /Library/TeX/texbin/opt/rocm/bin/hipcc...not found Checking for program /opt/X11/bin/opt/rocm/bin/hipcc...not found Checking for program /Library/Apple/usr/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program ./opt/rocm/bin/hipcc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found ============================================================================================= TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:886) Placeholder for now ============================================================================================= TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:907) Locate a functional SYCL compiler ============================================================================================= TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:933) Placeholder for now ============================================================================================= TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1020) Locate a functional Cxx compiler Checking for program /usr/local/Cellar/mpich/3.4.1_1/bin/mpiicpc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/mpiicpc...not found Unable to find programs ['mpiicpc'] providing listing of the specific search path Warning accessing /usr/local/Cellar/mpich/3.4.1_1/bin gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Checking for program /usr/local/Cellar/mpich/3.4.1_1/bin/mpiicpc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/mpiicpc...not found Unable to find programs ['mpiicpc'] providing listing of the specific search path Warning accessing /usr/local/Cellar/mpich/3.4.1_1/bin gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Checking for program /usr/local/Cellar/mpich/3.4.1_1/bin/mpiicpc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/mpiicpc...not found Unable to find programs ['mpiicpc'] providing listing of the specific search path Warning accessing /usr/local/Cellar/mpich/3.4.1_1/bin gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Checking for program /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx...found Defined make macro "CXX" to "/usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx" ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang-11: error: linker command failed with exit code 1 (use -v to see invocation) ======== Checking running linked program ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx --version stdout: clang version 11.1.0 Target: x86_64-apple-darwin19.6.0 Thread model: posix InstalledDir: /usr/local/opt/llvm/bin ============================================================================================= TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1061) Locate a functional Cxx preprocessor Checking for program /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx...found Defined make macro "CXXPP" to "/usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1160) Locate a functional Fortran compiler ============================================================================================= TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1355) ============================================================================================= TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1454) Check that the archiver exists and can make a library usable by the compiler Executing: ar -V Executing: ar -V Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /Users/markadams/opt/miniconda2/bin/ar...not found Checking for program /Users/markadams/opt/miniconda2/condabin/ar...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/ar...not found Checking for program /usr/local/opt/llvm/bin/ar...not found Checking for program /opt/anaconda2/bin/ar...not found Checking for program /usr/local/opt/texinfo/bin/ar...not found Checking for program /Users/markadams/homebrew/bin/ar...not found Checking for program /Users/markadams/homebrew/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /Users/markadams/opt/miniconda2/bin/ranlib...not found Checking for program /Users/markadams/opt/miniconda2/condabin/ranlib...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/ranlib...not found Checking for program /usr/local/opt/llvm/bin/ranlib...not found Checking for program /opt/anaconda2/bin/ranlib...not found Checking for program /usr/local/opt/texinfo/bin/ranlib...not found Checking for program /Users/markadams/homebrew/bin/ranlib...not found Checking for program /Users/markadams/homebrew/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/libconf1.a /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/libconf1.a ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c:6:26: warning: if statement has empty body [-Wempty-body] int b = foo(1); if (b); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c:6:26: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -L/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ============================================================================================= TESTING: checkArchiverRecipeArgfile from config.setCompilers(config/BuildSystem/config/setCompilers.py:1518) Checks if AR handles @ notation Executing: /usr/bin/ar cr checkRecipeArgfile.a @checkRecipeArgfile.args Possible ERROR while running archiver: exit code 1 stderr: ar: @checkRecipeArgfile.args: No such file or directory ============================================================================================= TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1598) Check that the linker can produce shared libraries Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking shared linker /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress', '-no_compact_unwind'] Checking for program /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc...found Defined make macro "LD_SHARED" to "/usr/local/Cellar/mpich/3.4.1_1/bin/mpicc" Trying C compiler flag Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -dynamiclib -single_module /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Valid C linker flag -dynamiclib -single_module Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -undefined dynamic_lookup /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Valid C linker flag -undefined dynamic_lookup Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -multiply_defined suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Valid C linker flag -multiply_defined suppress Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: clang-11: error: unknown argument: '-no_compact_unwind' Rejecting linker flag -no_compact_unwind due to nonzero status from link ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -L/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -lconftest Using shared linker /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc with flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] and library extension dylib Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS ============================================================================================= TESTING: checkLinkerMac from config.setCompilers(config/BuildSystem/config/setCompilers.py:1672) Tests some Apple Mac specific linker flags Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -Wl,-bind_at_load /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Valid C linker flag -Wl,-bind_at_load Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-bind_at_load /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Valid C linker flag -Wl,-multiply_defined,suppress Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Valid C linker flag -Wl,-multiply_defined -Wl,suppress Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Valid C linker flag -Wl,-commons,use_dylibs Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Valid C linker flag -Wl,-search_paths_first Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Valid C linker flag -Wl,-no_compact_unwind Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -Wl,-bind_at_load /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-bind_at_load Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-bind_at_load /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-multiply_defined,suppress Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-multiply_defined -Wl,suppress Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-commons,use_dylibs Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-search_paths_first Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-no_compact_unwind Executing: uname -s stdout: Darwin ============================================================================================= TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1298) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Accepted Cxx PIC code without compiler flag ============================================================================================= TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1710) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -V Trying C linker flag -Wl,-rpath, Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -Wl,-rpath,/Users/markadams/Codes/petsc -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/Users/markadams/Codes/petsc Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -Wl,-rpath,/Users/markadams/Codes/petsc -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/Users/markadams/Codes/petsc ============================================================================================= TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1749) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ============================================================================================= TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1795) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking dynamic linker /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc using flags ['-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress'] Checking for program /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/usr/local/Cellar/mpich/3.4.1_1/bin/mpicc" Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -ldl Valid C linker flag -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -ldl ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/libconftest.dylib", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -ldl Using dynamic linker /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc with flags ['-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress'] and library extension dylib ============================================================================================= TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1844) Output module data as defines and substitutions Substituting "CC" with "/usr/local/Cellar/mpich/3.4.1_1/bin/mpicc" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "/usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "" Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress" child config.setCompilers 6.576450 ============================================================================================= TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:31) ============================================================================================= TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:47) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Defined make rule "shared_arch" with dependencies "shared_darwin" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).$(2).dylib" Defined make macro "SL_LINKER_FUNCTION" to "-dynamiclib -install_name $(call SONAME_FUNCTION,$(1),$(2)) -compatibility_version $(2) -current_version $(3) -single_module -multiply_defined suppress -undefined dynamic_lookup" Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ============================================================================================= TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:92) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ============================================================================================= TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:98) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries child PETSc.options.sharedLibraries 0.008816 ============================================================================================= TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.002047 ============================================================================================= TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:82) Get the default compiler flags Defined make macro "C_VERSION" to "clang version 11.1.0" Defined make macro "MPICC_SHOW" to "clang -fgnu89-inline -Wno-deprecated -g -framework OpenCL -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/usr/local/Cellar/mpich/3.4.1_1/include -L/usr/local/Cellar/mpich/3.4.1_1/lib -lmpi -lpmpi" Trying C compiler flag -Wall Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector Added C compiler flag -fstack-protector Trying C compiler flag -fno-stack-check Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check Added C compiler flag -fno-stack-check Trying C compiler flag -mfp16-format=ieee Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -mfp16-format=ieee /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang-11: error: unknown argument: '-mfp16-format=ieee' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -mfp16-format=ieee clang-11: error: unknown argument: '-mfp16-format=ieee' PETSc Error: No output file produced Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to clang-11: error: unknown argument: '-mfp16-format=ieee' PETSc Error: No output file produced Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -Qunused-arguments Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments Added C compiler flag -Qunused-arguments Trying C compiler flag -fvisibility=hidden Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden Added C compiler flag -fvisibility=hidden Trying C compiler flag -g -O0 Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 Added C compiler flag -g -O0 Defined make macro "Cxx_VERSION" to "clang version 11.1.0" Defined make macro "MPICXX_SHOW" to "clang++ -Wno-deprecated -g -framework OpenCL -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/usr/local/Cellar/mpich/3.4.1_1/include -L/usr/local/Cellar/mpich/3.4.1_1/lib -lmpicxx -lmpi -lpmpi" Trying Cxx compiler flag -Wall Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fno-stack-check Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check Added Cxx compiler flag -fno-stack-check Trying Cxx compiler flag -fvisibility=hidden Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden Added Cxx compiler flag -fvisibility=hidden Trying Cxx compiler flag -g -O0 Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 Added Cxx compiler flag -g -O0 ============================================================================================= TESTING: checkIntelHardwareSupport from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:175) Use Linux/MacOS commands to determine what operations the hardware supports Executing: lscpu Executing: sysctl -a stdout: user.cs_path: /usr/bin:/bin:/usr/sbin:/sbin user.bc_base_max: 99 user.bc_dim_max: 2048 user.bc_scale_max: 99 user.bc_string_max: 1000 user.coll_weights_max: 2 user.expr_nest_max: 32 user.line_max: 2048 user.re_dup_max: 255 user.posix2_version: 200112 user.posix2_c_bind: 0 user.posix2_c_dev: 0 user.posix2_char_term: 0 user.posix2_fort_dev: 0 user.posix2_fort_run: 0 user.posix2_localedef: 0 user.posix2_sw_dev: 0 user.posix2_upe: 0 user.stream_max: 20 user.tzname_max: 255 kern.ostype: Darwin kern.osrelease: 19.6.0 kern.osrevision: 199506 kern.version: Darwin Kernel Version 19.6.0: Tue Jan 12 22:13:05 PST 2021; root:xnu-6153.141.16~1/RELEASE_X86_64 kern.maxvnodes: 263168 kern.maxproc: 4176 kern.maxfiles: 49152 kern.argmax: 262144 kern.securelevel: 0 kern.hostname: MarksMac-302.local kern.hostid: 0 kern.clockrate: { hz = 100, tick = 10000, tickadj = 0, profhz = 100, stathz = 100 } kern.posix1version: 200112 kern.ngroups: 16 kern.job_control: 1 kern.saved_ids: 1 kern.boottime: { sec = 1615813085, usec = 287210 } Mon Mar 15 08:58:05 2021 kern.nisdomainname: kern.maxfilesperproc: 24576 kern.maxprocperuid: 2784 kern.ipc.maxsockbuf: 8388608 kern.ipc.sockbuf_waste_factor: 8 kern.ipc.somaxconn: 128 kern.ipc.nmbclusters: 65536 kern.ipc.soqlimitcompat: 1 kern.ipc.mleak_sample_factor: 500 kern.ipc.mb_normalized: 0 kern.ipc.mb_watchdog: 0 kern.ipc.mb_drain_force: 0 kern.ipc.mb_drain_maxint: 0 kern.ipc.socket_debug: 0 kern.ipc.sodefunct_calls: 0 kern.ipc.sosendminchain: 16384 kern.ipc.sorecvmincopy: 16384 kern.ipc.sosendjcl: 1 kern.ipc.sosendjcl_ignore_capab: 0 kern.ipc.sosendbigcl_ignore_capab: 0 kern.ipc.sodefunctlog: 0 kern.ipc.sothrottlelog: 0 kern.ipc.sorestrictrecv: 1 kern.ipc.sorestrictsend: 1 kern.ipc.soreserveheadroom: 1 kern.ipc.maxextbkidleperproc: 1 kern.ipc.extbkidletime: 600 kern.ipc.extbkidlercvhiwat: 131072 kern.ipc.sotcdb: 0 kern.ipc.throttle_best_effort: 0 kern.ipc.njcl: 21840 kern.ipc.njclbytes: 16384 kern.ipc.soqlencomp: 0 kern.ipc.sbmb_cnt: 49448 kern.ipc.sbmb_cnt_peak: 77647 kern.ipc.sbmb_cnt_floor: 49268 kern.ipc.sbmb_limreached: 0 kern.ipc.io_policy.log: 0 kern.ipc.io_policy.uuid: 1 kern.ipc.maxsendmsgx: 100 kern.ipc.maxrecvmsgx: 100 kern.usrstack: -275873792 kern.netboot: 0 kern.sysv.shmmax: 4194304 kern.sysv.shmmin: 1 kern.sysv.shmmni: 32 kern.sysv.shmseg: 8 kern.sysv.shmall: 1024 kern.sysv.semmni: 87381 kern.sysv.semmns: 87381 kern.sysv.semmnu: 87381 kern.sysv.semmsl: 87381 kern.sysv.semume: 10 kern.aiomax: 90 kern.aioprocmax: 16 kern.aiothreads: 4 kern.corefile: /cores/core.%P kern.coredump: 1 kern.sugid_coredump: 0 kern.delayterm: 0 kern.shreg_private: 0 kern.posix.sem.max: 10000 kern.usrstack64: 140732917514240 kern.tfp.policy: 2 kern.procname: sysctl kern.speculative_reads_disabled: 0 kern.osversion: 19H524 kern.safeboot: 0 kern.rage_vnode: 0 kern.tty.ptmx_max: 511 kern.check_openevt: 0 kern.threadname: kern.dtrace.err_verbose: 0 kern.dtrace.buffer_memory_maxsize: 5726623061 kern.dtrace.buffer_memory_inuse: 0 kern.dtrace.difo_maxsize: 262144 kern.dtrace.dof_maxsize: 524288 kern.dtrace.global_maxsize: 16384 kern.dtrace.provide_private_probes: 1 kern.dtrace.dof_mode: 1 kern.dtrace.ignore_fbt_blacklist: 0 kern.nbuf: 16384 kern.maxnbuf: 16384 kern.monotonic.supported: 1 kern.monotonic.pmis: 74174 0 kern.monotonic.retrograde_updates: 74174 0 kern.monotonic.task_thread_counting: 1 kern.flush_cache_on_write: 0 kern.wq_stalled_window_usecs: 200 kern.wq_reduce_pool_window_usecs: 5000000 kern.wq_max_timer_interval_usecs: 50000 kern.wq_max_threads: 512 kern.wq_max_constrained_threads: 64 kern.kdbg.experimental_continuous: 0 kern.kdbg.debug: 0 kern.kdbg.oldest_time: 0 kern.ds_supgroups_supported: 1 kern.sugid_scripts: 0 kern.zleak.active: 0 kern.zleak.max_zonemap_size: 6442450944 kern.zleak.global_threshold: 3221225472 kern.zleak.zone_threshold: 402653184 kern.uuid: 64F23D6D-4C30-3FC4-B7C2-9EE0BBA0D29A kern.osproductversion: 10.15.7 kern.iossupportversion: 13.6 kern.bootargs: chunklist-security-epoch=0 -chunklist-no-rev2-dev kern.kernelcacheuuid: F1769607-26C1-6C8C-3585-F73098F9E28A kern.num_files: 6355 kern.num_vnodes: 263168 kern.num_tasks: 4096 kern.num_threads: 20480 kern.num_taskthreads: 4096 kern.num_recycledvnodes: 5217056 kern.namecache_disabled: 0 kern.sched_enable_smt: 1 kern.sched_allow_NO_SMT_threads: 1 kern.preheat_max_bytes: 1048576 kern.preheat_min_bytes: 32768 kern.speculative_prefetch_max: 201326592 kern.speculative_prefetch_max_iosize: 524288 kern.vm_page_free_target: 4000 kern.vm_page_free_min: 3500 kern.vm_page_free_reserved: 776 kern.vm_page_speculative_percentage: 5 kern.vm_page_speculative_q_age_ms: 500 kern.vm_max_delayed_work_limit: 32 kern.vm_max_batch: 256 kern.bootsessionuuid: 622D3995-6368-4BFD-88AC-99739D7131E7 kern.timer.coalescing_enabled: 1 kern.timer.deadline_tracking_bin_1: 2000000 kern.timer.deadline_tracking_bin_2: 5000000 kern.timer.longterm.threshold: 1000 kern.timer.longterm.scan_limit: 100000 kern.timer.longterm.scan_interval: 100000 kern.timer.longterm.qlen: 327 kern.timer.longterm.scan_pauses: 518121 kern.vfsnspace: 0 kern.singleuser: 0 kern.minimalboot: 0 kern.affinity_sets_enabled: 1 kern.affinity_sets_mapping: 1 kern.slide: 1 kern.ipc_voucher_trace_contents: 0 kern.stack_size: 16384 kern.stack_depth_max: 11336 kern.kern_feature_overrides: 0 kern.ipc_portbt: 0 kern.sched: dualq kern.timer_coalesce_bg_scale: -5 kern.timer_resort_threshold_ns: 50000000 kern.timer_coalesce_bg_ns_max: 100000000 kern.timer_coalesce_kt_scale: 3 kern.timer_coalesce_kt_ns_max: 1000000 kern.timer_coalesce_fp_scale: 3 kern.timer_coalesce_fp_ns_max: 1000000 kern.timer_coalesce_ts_scale: 3 kern.timer_coalesce_ts_ns_max: 1000000 kern.timer_coalesce_tier0_scale: 3 kern.timer_coalesce_tier0_ns_max: 1000000 kern.timer_coalesce_tier1_scale: 2 kern.timer_coalesce_tier1_ns_max: 5000000 kern.timer_coalesce_tier2_scale: 1 kern.timer_coalesce_tier2_ns_max: 20000000 kern.timer_coalesce_tier3_scale: -2 kern.timer_coalesce_tier3_ns_max: 75000000 kern.timer_coalesce_tier4_scale: -15 kern.timer_coalesce_tier4_ns_max: 10000000000 kern.timer_coalesce_tier5_scale: -15 kern.timer_coalesce_tier5_ns_max: 10000000000 kern.hv_support: 1 kern.thread_groups_supported: 0 kern.memorystatus_sysprocs_idle_delay_time: 10 kern.memorystatus_apps_idle_delay_time: 10 kern.jetsam_aging_policy: 2 kern.memorystatus_purge_on_warning: 2 kern.memorystatus_purge_on_urgent: 5 kern.memorystatus_purge_on_critical: 8 kern.bridge.bootsessionuuid: 0E5E5A63-EC17-489C-B393-41BB10D10B3F kern.msgbuf: 16384 kern.task_exc_guard_default: 0 kern.ulock_adaptive_spin_usecs: 20 kern.eventhandler.debug: 0 kern.secure_kernel: 0 kern.skywalk.ring_stat_enable: 0 kern.skywalk.flowswitch.ip_reass: 1 kern.skywalk.flowswitch.ipfm_frag_ttl: 60 kern.skywalk.flowswitch.ipfm_timeout_tcall_ival: 1 kern.skywalk.flowswitch.flow_route_expire: 600 kern.skywalk.flowswitch.en0.ipfm.frag_limit: 352 kern.skywalk.flowswitch.en0.ipfm.frag_count: 0 kern.skywalk.flowswitch.en0.ipfm.queue_limit: 176 kern.skywalk.flowswitch.en0.ipfm.queue_count: 0 kern.skywalk.flowswitch.en1.ipfm.frag_limit: 992 kern.skywalk.flowswitch.en1.ipfm.frag_count: 0 kern.skywalk.flowswitch.en1.ipfm.queue_limit: 496 kern.skywalk.flowswitch.en1.ipfm.queue_count: 0 kern.skywalk.flowswitch.en2.ipfm.frag_limit: 992 kern.skywalk.flowswitch.en2.ipfm.frag_count: 0 kern.skywalk.flowswitch.en2.ipfm.queue_limit: 496 kern.skywalk.flowswitch.en2.ipfm.queue_count: 0 kern.skywalk.flowswitch.en3.ipfm.frag_limit: 992 kern.skywalk.flowswitch.en3.ipfm.frag_count: 0 kern.skywalk.flowswitch.en3.ipfm.queue_limit: 496 kern.skywalk.flowswitch.en3.ipfm.queue_count: 0 kern.skywalk.flowswitch.en4.ipfm.frag_limit: 992 kern.skywalk.flowswitch.en4.ipfm.frag_count: 0 kern.skywalk.flowswitch.en4.ipfm.queue_limit: 496 kern.skywalk.flowswitch.en4.ipfm.queue_count: 0 kern.skywalk.flowswitch.awdl0.ipfm.frag_limit: 352 kern.skywalk.flowswitch.awdl0.ipfm.frag_count: 0 kern.skywalk.flowswitch.awdl0.ipfm.queue_limit: 176 kern.skywalk.flowswitch.awdl0.ipfm.queue_count: 0 kern.skywalk.netif.default_drop: 0 kern.interrupt_timer_coalescing_enabled: 1 kern.timer_coalesce_idle_entry_hard_deadline_max: 5000000 kern.pmtimeout: 0 kern.wake_abs_time: 0 kern.sleep_abs_time: 0 kern.useractive_abs_time: 689248085910299 kern.userinactive_abs_time: 686009933221780 kern.sleeptime: { sec = 0, usec = 0 } Wed Dec 31 19:00:00 1969 kern.waketime: { sec = 0, usec = 0 } Wed Dec 31 19:00:00 1969 kern.willshutdown: 0 kern.iokittest: 0 kern.progressmeterenable: 0 kern.progressmeter: 906 kern.wakereason: kern.consoleoptions: 0 kern.aotmode: 0 kern.aotmodebits: 0 kern.hibernatefile: kern.bootsignature: kern.hibernatemode: 0 kern.hibernategraphicsready: 0 kern.hibernatewakenotification: 0 kern.hibernatelockscreenready: 0 kern.hibernatehidready: 0 kern.monotonicclock: 0 kern.monotonicclock_usecs: 45120742724975 693497333608988 kern.monotonicclock_rate_usecs: 30 kern.monotoniclock_offset_usecs: 1571385852046234 kern.pthread_mutex_default_policy: 0 kern.hv.vmx_mitigations: 7 kern.hv.vmx_supported_mitigations: 15 vm.loadavg: { 1.92 2.25 2.61 } vm.swapusage: total = 3072.00M used = 2267.75M free = 804.25M (encrypted) vm.cs_force_kill: 0 vm.cs_force_hard: 0 vm.cs_debug: 0 vm.cs_debug_fail_on_unsigned_code: 0 vm.cs_debug_unsigned_exec_failures: 0 vm.cs_debug_unsigned_mmap_failures: 0 vm.cs_all_vnodes: 0 vm.cs_system_enforcement: 1 vm.cs_process_enforcement: 0 vm.cs_enforcement_panic: 0 vm.cs_library_validation: 0 vm.global_user_wire_limit: 13056700579 vm.user_wire_limit: 13056700579 vm.global_no_user_wire_amount: 4123168605 vm.vm_copy_src_not_internal: 0 vm.vm_copy_src_not_symmetric: 0 vm.vm_copy_src_large: 0 vm.vm_page_external_count: 624588 vm.vm_page_filecache_min: 1005759 vm.vm_page_xpmapped_min: 173448 vm.compressor_input_bytes: 268775280640 vm.compressor_compressed_bytes: 88081469766 vm.compressor_bytes_used: 2080396592 vm.compressor_mode: 4 vm.compressor_is_active: 1 vm.compressor_swapout_target_age: 0 vm.compressor_available: 1 vm.compressor_min_csegs_per_major_compaction: 30 vm.vm_ripe_target_age_in_secs: 172800 vm.compressor_eval_period_in_msecs: 250 vm.compressor_sample_min_in_msecs: 500 vm.compressor_sample_max_in_msecs: 10000 vm.compressor_thrashing_threshold_per_10msecs: 50 vm.compressor_thrashing_min_per_10msecs: 20 vm.swapfileprefix: /private/var/vm/swapfile vm.compressor_timing_enabled: 0 vm.lz4_compressions: 0 vm.lz4_compression_failures: 0 vm.lz4_compressed_bytes: 0 vm.lz4_wk_compression_delta: 0 vm.lz4_wk_compression_negative_delta: 0 vm.lz4_decompressions: 0 vm.lz4_decompressed_bytes: 0 vm.uc_decompressions: 0 vm.wk_compressions: 0 vm.wk_catime: 0 vm.wkh_catime: 0 vm.wkh_compressions: 0 vm.wks_catime: 0 vm.wks_compressions: 0 vm.wk_compressions_exclusive: 0 vm.wk_sv_compressions: 0 vm.wk_mzv_compressions: 0 vm.wk_compression_failures: 0 vm.wk_compressed_bytes_exclusive: 0 vm.wk_compressed_bytes_total: 0 vm.wks_compressed_bytes: 0 vm.wks_compression_failures: 0 vm.wks_sv_compressions: 0 vm.wk_decompressions: 0 vm.wk_datime: 0 vm.wkh_datime: 0 vm.wkh_decompressions: 0 vm.wks_datime: 0 vm.wks_decompressions: 0 vm.wk_decompressed_bytes: 0 vm.wk_sv_decompressions: 0 vm.lz4_threshold: 2048 vm.wkdm_reeval_threshold: 1536 vm.lz4_max_failure_skips: 0 vm.lz4_max_failure_run_length: -1 vm.lz4_max_preselects: 0 vm.lz4_run_preselection_threshold: -1 vm.lz4_run_continue_bytes: 0 vm.lz4_profitable_bytes: 0 vm.vm_page_background_mode: 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vm.shared_region_version: 3 vm.shared_region_persistence: 0 vm.pagesize: 4096 vm.vm_page_free_target: 4000 vm.memory_pressure: 0 vm.page_free_wanted: 0 vm.page_purgeable_count: 38697 vm.page_purgeable_wired_count: 4231 vm.kern_lpage_count: 118 vm.madvise_free_debug: 0 vm.page_reusable_count: 173221 vm.reusable_success: 81446541 vm.reusable_failure: 1286558 vm.reusable_pages_shared: 49143 vm.all_reusable_calls: 0 vm.partial_reusable_calls: 81905090 vm.reuse_success: 3876118 vm.reuse_failure: 0 vm.all_reuse_calls: 0 vm.partial_reuse_calls: 6772195 vm.can_reuse_success: 209334097 vm.can_reuse_failure: 3232556 vm.reusable_reclaimed: 0 vm.reusable_nonwritable: 1252148 vm.reusable_shared: 16054578 vm.free_shared: 5 vm.page_free_count: 12530 vm.page_speculative_count: 91061 vm.page_cleaned_count: 0 vm.page_pageable_internal_count: 2087950 vm.page_pageable_external_count: 620370 vm.pageout_inactive_clean: 97721469 vm.pageout_inactive_used: 41237982 vm.pageout_inactive_dirty_internal: 65625792 vm.pageout_inactive_dirty_external: 314162 vm.pageout_speculative_clean: 74400486 vm.pageout_freed_external: 7517529 vm.pageout_freed_speculative: 74400486 vm.pageout_freed_cleaned: 741387 vm.prefault_nb_pages: 0 vm.prefault_nb_bailout: 0 vm.vm_clump_promote_threshold: 4 vm.vm_min_kernel_address: 18446743521806254080 vm.vm_max_kernel_address: 18446744073709547519 vm.pages: 4027114 vm.page_busy_absent_skipped: 0 vm.upl_pages_tainted: 0 vm.iopl_pages_tainted: 0 vm.corpse_footprint_count: 29 vm.corpse_footprint_size_avg: 185107 vm.corpse_footprint_size_max: 642896 vm.corpse_footprint_full: 0 vm.corpse_footprint_no_buf: 0 vm.shared_region_pager_copied: 0 vm.shared_region_pager_slid: 225704 vm.shared_region_pager_slid_error: 0 vm.shared_region_pager_reclaimed: 209734 vm.protect_privileged_from_untrusted: 1 vm.copied_on_read: 4 vfs.generic.maxtypenum: 28 vfs.generic.nfs.client.initialdowndelay: 5 vfs.generic.nfs.client.nextdowndelay: 30 vfs.generic.nfs.client.iosize: 1048576 vfs.generic.nfs.client.access_cache_timeout: 60 vfs.generic.nfs.client.allow_async: 0 vfs.generic.nfs.client.statfs_rate_limit: 10 vfs.generic.nfs.client.nfsiod_thread_max: 16 vfs.generic.nfs.client.nfsiod_thread_count: 0 vfs.generic.nfs.client.lockd_mounts: 0 vfs.generic.nfs.client.max_async_writes: 128 vfs.generic.nfs.client.access_delete: 1 vfs.generic.nfs.client.access_dotzfs: 1 vfs.generic.nfs.client.access_for_getattr: 0 vfs.generic.nfs.client.idmap_ctrl: 1 vfs.generic.nfs.client.callback_port: 0 vfs.generic.nfs.client.is_mobile: 1 vfs.generic.nfs.client.squishy_flags: 11 vfs.generic.nfs.client.debug_ctl: 0 vfs.generic.nfs.client.readlink_nocache: 0 vfs.generic.nfs.client.root_steals_gss_context: 0 vfs.generic.nfs.client.default_nfs4domain: vfs.generic.nfs.server.wg_delay: 1000 vfs.generic.nfs.server.wg_delay_v3: 0 vfs.generic.nfs.server.require_resv_port: 0 vfs.generic.nfs.server.async: 0 vfs.generic.nfs.server.export_hash_size: 64 vfs.generic.nfs.server.reqcache_size: 64 vfs.generic.nfs.server.request_queue_length: 128 vfs.generic.nfs.server.user_stats: 1 vfs.generic.nfs.server.gss_context_ttl: 28800 vfs.generic.nfs.server.fsevents: 1 vfs.generic.nfs.server.nfsd_thread_max: 0 vfs.generic.nfs.server.nfsd_thread_count: 0 vfs.generic.nfs.server.nfsd_sock_idle_timeout: 3600 vfs.generic.nfs.server.nfsd_tcp_connections: 0 vfs.generic.nfs.server.use_upcall_svc: 1 vfs.generic.nfs.server.upcall_queue_limit: 0 vfs.generic.nfs.server.upcall_queue_max_seen: 0 vfs.generic.nfs.server.upcall_queue_count: 0 vfs.generic.sync_timeout: 5 vfs.generic.root_unmounted_cleanly: 0 vfs.generic.hfs.kdebug.allocation: 0 vfs.generic.hfs.jnl.trim_flush: 240 vfs.generic.hfs.jnl.kdebug.trim: 0 vfs.generic.hfs.allocated: 0 vfs.generic.always_do_fullfsync: 0 vfs.generic.apfs.fusion_rc_promotion_size_limit_mb: 4096 vfs.generic.apfs.fusion_rc_flags: 0 vfs.generic.apfs.fusion_w2rc_filled_ratio_threshold: 50 vfs.generic.apfs.fusion_lc_rc_promotion_threshold_mult: 8 vfs.generic.apfs.fusion_rc_promotion_threshold_mult: 4 vfs.generic.apfs.fusion_wbc_buffersize: 16777216 vfs.generic.apfs.fusion_verbosity_flags: 0 vfs.generic.apfs.fusion_paranoia_level: 0 vfs.generic.apfs.fusion_swapfile_backoff: 4 vfs.generic.apfs.fusion_slow_io_threshold: 10240 vfs.generic.apfs.fusion_elevator_throttle: 100 vfs.generic.apfs.fusion_promoter_throttle: 100 vfs.generic.apfs.fusion_promoter_queue_limit: 1000 vfs.generic.apfs.fusion_wbc_elevator_wmk: 0 vfs.generic.apfs.fusion_wbc_backoff_wmk_reenable: 25 vfs.generic.apfs.fusion_wbc_backoff_wmk_med: 95 vfs.generic.apfs.fusion_wbc_backoff_wmk_low: 60 vfs.generic.apfs.allocated: 255157678 vfs.generic.autofs.vnode_recycle_on_inactive: 1 vfs.nummntops: 23 vfs.nspace.resolver: 0 vfs.nspace.prevent_materialization: 0 vfs.nspace.thread_prevent_materialization: 0 net.local.stream.sendspace: 8192 net.local.stream.recvspace: 8192 net.local.stream.tracemdns: 0 net.local.dgram.maxdgram: 2048 net.local.dgram.recvspace: 4096 net.local.inflight: 0 net.inet.ip.portrange.lowfirst: 1023 net.inet.ip.portrange.lowlast: 600 net.inet.ip.portrange.first: 49152 net.inet.ip.portrange.last: 65535 net.inet.ip.portrange.hifirst: 49152 net.inet.ip.portrange.hilast: 65535 net.inet.ip.forwarding: 0 net.inet.ip.redirect: 1 net.inet.ip.ttl: 64 net.inet.ip.rtexpire: 10 net.inet.ip.rtminexpire: 10 net.inet.ip.rtmaxcache: 128 net.inet.ip.sourceroute: 0 net.inet.ip.accept_sourceroute: 0 net.inet.ip.gifttl: 30 net.inet.ip.subnets_are_local: 0 net.inet.ip.mcast.maxgrpsrc: 512 net.inet.ip.mcast.maxsocksrc: 128 net.inet.ip.mcast.loop: 1 net.inet.ip.dummynet.hash_size: 64 net.inet.ip.dummynet.curr_time: 0 net.inet.ip.dummynet.ready_heap: 0 net.inet.ip.dummynet.extract_heap: 0 net.inet.ip.dummynet.searches: 0 net.inet.ip.dummynet.search_steps: 0 net.inet.ip.dummynet.expire: 1 net.inet.ip.dummynet.max_chain_len: 16 net.inet.ip.dummynet.red_lookup_depth: 256 net.inet.ip.dummynet.red_avg_pkt_size: 512 net.inet.ip.dummynet.red_max_pkt_size: 1500 net.inet.ip.dummynet.debug: 0 net.inet.ip.random_id_statistics: 0 net.inet.ip.random_id_collisions: 0 net.inet.ip.random_id_total: 0 net.inet.ip.sendsourcequench: 0 net.inet.ip.maxfragpackets: 2048 net.inet.ip.fragpackets: 0 net.inet.ip.maxfragsperpacket: 128 net.inet.ip.adj_clear_hwcksum: 0 net.inet.ip.adj_partial_sum: 1 net.inet.ip.check_interface: 1 net.inet.ip.checkinterface_debug: 0 net.inet.ip.rx_chaining: 1 net.inet.ip.rx_chainsz: 6 net.inet.ip.linklocal.in.allowbadttl: 1 net.inet.ip.random_id: 1 net.inet.ip.maxchainsent: 49 net.inet.ip.select_srcif_debug: 0 net.inet.ip.output_perf: 0 net.inet.ip.output_perf_bins: 0 net.inet.ip.rfc6864: 1 net.inet.icmp.maskrepl: 0 net.inet.icmp.icmplim: 250 net.inet.icmp.timestamp: 0 net.inet.icmp.drop_redirect: 1 net.inet.icmp.log_redirect: 0 net.inet.icmp.bmcastecho: 1 net.inet.igmp.recvifkludge: 1 net.inet.igmp.sendra: 1 net.inet.igmp.sendlocal: 1 net.inet.igmp.v1enable: 1 net.inet.igmp.v2enable: 1 net.inet.igmp.legacysupp: 0 net.inet.igmp.default_version: 3 net.inet.igmp.gsrdelay: 10 net.inet.igmp.debug: 0 net.inet.tcp.rfc1644: 0 net.inet.tcp.mssdflt: 512 net.inet.tcp.keepidle: 7200000 net.inet.tcp.keepintvl: 75000 net.inet.tcp.sendspace: 131072 net.inet.tcp.recvspace: 131072 net.inet.tcp.keepinit: 75000 net.inet.tcp.v6mssdflt: 1024 net.inet.tcp.backoff_maximum: 65536 net.inet.tcp.ecn_timeout: 60 net.inet.tcp.disable_tcp_heuristics: 0 net.inet.tcp.clear_tfocache: 0 net.inet.tcp.log_in_vain: 4 net.inet.tcp.blackhole: 2 net.inet.tcp.delayed_ack: 3 net.inet.tcp.tcp_lq_overflow: 1 net.inet.tcp.recvbg: 0 net.inet.tcp.drop_synfin: 1 net.inet.tcp.reass.overflows: 0 net.inet.tcp.slowlink_wsize: 8192 net.inet.tcp.maxseg_unacked: 8 net.inet.tcp.rfc3465: 1 net.inet.tcp.rfc3465_lim2: 1 net.inet.tcp.recv_allowed_iaj: 5 net.inet.tcp.doautorcvbuf: 1 net.inet.tcp.autotunereorder: 1 net.inet.tcp.autorcvbufmax: 2097152 net.inet.tcp.lro: 0 net.inet.tcp.lrodbg: 0 net.inet.tcp.lro_startcnt: 4 net.inet.tcp.disable_access_to_stats: 1 net.inet.tcp.challengeack_limit: 10 net.inet.tcp.do_rfc5961: 1 net.inet.tcp.rcvsspktcnt: 512 net.inet.tcp.rexmt_thresh: 3 net.inet.tcp.path_mtu_discovery: 1 net.inet.tcp.slowstart_flightsize: 1 net.inet.tcp.local_slowstart_flightsize: 8 net.inet.tcp.tso: 1 net.inet.tcp.ecn_setup_percentage: 100 net.inet.tcp.ecn_initiate_out: 2 net.inet.tcp.ecn_negotiate_in: 2 net.inet.tcp.packetchain: 50 net.inet.tcp.socket_unlocked_on_output: 1 net.inet.tcp.rfc3390: 1 net.inet.tcp.min_iaj_win: 16 net.inet.tcp.acc_iaj_react_limit: 200 net.inet.tcp.doautosndbuf: 1 net.inet.tcp.autosndbufinc: 8192 net.inet.tcp.autosndbufmax: 2097152 net.inet.tcp.ack_prioritize: 1 net.inet.tcp.rtt_recvbg: 1 net.inet.tcp.recv_throttle_minwin: 16384 net.inet.tcp.enable_tlp: 1 net.inet.tcp.sack: 1 net.inet.tcp.sack_maxholes: 128 net.inet.tcp.sack_globalmaxholes: 65536 net.inet.tcp.sack_globalholes: 0 net.inet.tcp.fastopen_backlog: 10 net.inet.tcp.fastopen: 3 net.inet.tcp.now_init: 77600924 net.inet.tcp.microuptime_init: 697589 net.inet.tcp.minmss: 216 net.inet.tcp.do_tcpdrain: 0 net.inet.tcp.pcbcount: 139 net.inet.tcp.tw_pcbcount: 2 net.inet.tcp.icmp_may_rst: 1 net.inet.tcp.rtt_min: 100 net.inet.tcp.rexmt_slop: 200 net.inet.tcp.randomize_ports: 0 net.inet.tcp.win_scale_factor: 3 net.inet.tcp.init_rtt_from_cache: 1 net.inet.tcp.tcbhashsize: 4096 net.inet.tcp.keepcnt: 8 net.inet.tcp.msl: 15000 net.inet.tcp.max_persist_timeout: 0 net.inet.tcp.always_keepalive: 0 net.inet.tcp.timer_fastmode_idlemax: 10 net.inet.tcp.broken_peer_syn_rexmit_thres: 10 net.inet.tcp.tcp_timer_advanced: 253 net.inet.tcp.tcp_resched_timerlist: 759352 net.inet.tcp.pmtud_blackhole_detection: 1 net.inet.tcp.pmtud_blackhole_mss: 1200 net.inet.tcp.cc_debug: 0 net.inet.tcp.newreno_sockets: 0 net.inet.tcp.background_sockets: 0 net.inet.tcp.cubic_sockets: 128 net.inet.tcp.use_newreno: 0 net.inet.tcp.cubic_tcp_friendliness: 0 net.inet.tcp.cubic_fast_convergence: 0 net.inet.tcp.cubic_use_minrtt: 0 net.inet.tcp.lro_sz: 8 net.inet.tcp.lro_time: 10 net.inet.tcp.bg_target_qdelay: 100 net.inet.tcp.bg_allowed_increase: 8 net.inet.tcp.bg_tether_shift: 1 net.inet.tcp.bg_ss_fltsz: 2 net.inet.tcp.log.level_info: 0 net.inet.tcp.log.enable: 0 net.inet.tcp.log.enable_usage: connection:0x1 rtt:0x2 ka:0x4 loop:0x10 local:0x20 gw:0x40 syn:0x100 fin:0x200 rst:0x400 dropnecp:0x1000 droppcb:0x2000 droppkt:0x4000 net.inet.tcp.log.rtt_port: 0 net.inet.tcp.log.thflags_if_family: 0 net.inet.tcp.log.privacy: 1 net.inet.tcp.log.rate_limit: 600 net.inet.tcp.log.rate_duration: 60 net.inet.tcp.log.rate_max: 0 net.inet.tcp.log.rate_exceeded_total: 0 net.inet.tcp.log.rate_current: 0 net.inet.udp.checksum: 1 net.inet.udp.maxdgram: 9216 net.inet.udp.recvspace: 786896 net.inet.udp.log_in_vain: 4 net.inet.udp.blackhole: 1 net.inet.udp.pcbcount: 87 net.inet.udp.randomize_ports: 1 net.inet.ipsec.def_policy: 1 net.inet.ipsec.esp_trans_deflev: 1 net.inet.ipsec.esp_net_deflev: 1 net.inet.ipsec.ah_trans_deflev: 1 net.inet.ipsec.ah_net_deflev: 1 net.inet.ipsec.ah_cleartos: 1 net.inet.ipsec.ah_offsetmask: 0 net.inet.ipsec.dfbit: 0 net.inet.ipsec.ecn: 0 net.inet.ipsec.debug: 0 net.inet.ipsec.esp_randpad: -1 net.inet.ipsec.bypass: 1 net.inet.ipsec.esp_port: 4500 net.inet.log_restricted: 0 net.inet.raw.maxdgram: 8192 net.inet.raw.recvspace: 8192 net.inet.raw.pcbcount: 1 net.inet.mptcp.enable: 1 net.inet.mptcp.mptcp_cap_retr: 4 net.inet.mptcp.dss_csum: 0 net.inet.mptcp.fail: 1 net.inet.mptcp.keepalive: 840 net.inet.mptcp.rtthist_thresh: 600 net.inet.mptcp.userto: 1 net.inet.mptcp.rto_thresh: 1500 net.inet.mptcp.probeto: 1000 net.inet.mptcp.probecnt: 5 net.inet.mptcp.dbg_area: 31 net.inet.mptcp.dbg_level: 1 net.inet.mptcp.pcbcount: 0 net.inet.mptcp.alternate_port: 0 net.inet.mptcp.allow_aggregate: 0 net.inet.mptcp.expected_progress_headstart: 5000 net.inet.mptcp.rto: 3 net.inet.mptcp.nrto: 3 net.inet.mptcp.tw: 60 net.link.generic.system.ifcount: 19 net.link.generic.system.if_verbose: 0 net.link.generic.system.dlil_verbose: 0 net.link.generic.system.sndq_maxlen: 128 net.link.generic.system.rcvq_maxlen: 256 net.link.generic.system.rxpoll_decay: 2 net.link.generic.system.rxpoll_freeze_time: 1000000000 net.link.generic.system.rxpoll_sample_time: 10000000 net.link.generic.system.rxpoll_interval_time: 1000000 net.link.generic.system.rxpoll_interval_pkts: 0 net.link.generic.system.rxpoll_wakeups_lowat: 10 net.link.generic.system.rxpoll_wakeups_hiwat: 100 net.link.generic.system.rxpoll_max: 0 net.link.generic.system.rxpoll: 1 net.link.generic.system.dlil_input_threads: 18 net.link.generic.system.dlil_input_sanity_check: 0 net.link.generic.system.flow_advisory: 1 net.link.generic.system.delaybased_queue: 1 net.link.generic.system.hwcksum_in_invalidated: 0 net.link.generic.system.hwcksum_dbg: 0 net.link.generic.system.start_delayed: 0 net.link.generic.system.start_delay_disabled: 0 net.link.generic.system.hwcksum_dbg_mode: 0 net.link.generic.system.hwcksum_dbg_partial_forced: 0 net.link.generic.system.hwcksum_dbg_partial_forced_bytes: 0 net.link.generic.system.hwcksum_dbg_partial_rxoff_forced: 0 net.link.generic.system.hwcksum_dbg_partial_rxoff_adj: 0 net.link.generic.system.hwcksum_dbg_verified: 0 net.link.generic.system.hwcksum_dbg_bad_cksum: 0 net.link.generic.system.hwcksum_dbg_bad_rxoff: 0 net.link.generic.system.hwcksum_dbg_adjusted: 0 net.link.generic.system.hwcksum_dbg_finalized_hdr: 0 net.link.generic.system.hwcksum_dbg_finalized_data: 0 net.link.generic.system.hwcksum_tx: 1 net.link.generic.system.hwcksum_rx: 1 net.link.generic.system.tx_chain_len_count: 0 net.link.generic.system.threshold_notify: 1 net.link.generic.system.threshold_interval: 2 net.link.generic.system.enable_netagent: 0 net.link.generic.system.port_used.entry_count: 0 net.link.generic.system.port_used.entry_gen: 0 net.link.generic.system.port_used.verbose: 0 net.link.generic.system.port_used.wakeuuid_not_set_count: 4558 net.link.generic.system.port_used.wakeuuid_not_set_last_time: { sec = 1616506418, usec = 567471 } Tue Mar 23 09:33:38 2021 net.link.generic.system.port_used.wakeuuid_not_set_last_if: awdl0 net.link.ether.inet.prune_intvl: 300 net.link.ether.inet.probe_intvl: 7 net.link.ether.inet.max_age: 1200 net.link.ether.inet.host_down_time: 20 net.link.ether.inet.arp_llreach_base: 120 net.link.ether.inet.arp_unicast_lim: 3 net.link.ether.inet.maxtries: 5 net.link.ether.inet.maxhold: 16 net.link.ether.inet.useloopback: 1 net.link.ether.inet.proxyall: 0 net.link.ether.inet.sendllconflict: 0 net.link.ether.inet.log_arp_warnings: 0 net.link.ether.inet.keep_announcements: 1 net.link.ether.inet.send_conflicting_probes: 1 net.link.ether.inet.verbose: 0 net.link.ether.inet.maxhold_total: 1024 net.link.bridge.inherit_mac: 0 net.link.bridge.rtable_prune_period: 300 net.link.bridge.rtable_hash_size_max: 2048 net.link.bridge.txstart: 0 net.link.bridge.debug: 0 net.link.loopback.max_dequeue: 256 net.link.loopback.sched_model: 0 net.link.loopback.dequeue_sc: 0 net.link.fake.txstart: 1 net.link.fake.hwcsum: 0 net.link.fake.nxattach: 0 net.link.fake.bsd_mode: 1 net.link.fake.debug: 0 net.link.fake.wmm_mode: 0 net.link.fake.multibuflet: 0 net.link.fake.copypkt_mode: 0 net.link.fake.tx_headroom: 0 net.link.fake.max_mtu: 2048 net.link.fake.buflet_size: 512 net.link.fake.user_access: 0 net.link.fake.if_adv_intvl: 0 net.link.fake.tx_drops: 0 net.link.bond.debug: 0 net.link.iptap.total_tap_count: 0 net.link.iptap.log: 0 net.link.pktap.total_tap_count: 0 net.link.pktap.count_unknown_if_type: 0 net.link.pktap.log: 0 net.key.debug: 0 net.key.spi_trycnt: 1000 net.key.spi_minval: 256 net.key.spi_maxval: 268435455 net.key.int_random: 60 net.key.larval_lifetime: 30 net.key.blockacq_count: 10 net.key.blockacq_lifetime: 20 net.key.esp_keymin: 256 net.key.esp_auth: 0 net.key.ah_keymin: 128 net.key.prefered_oldsa: 0 net.key.natt_keepalive_interval: 20 net.inet6.ip6.forwarding: 0 net.inet6.ip6.redirect: 1 net.inet6.ip6.hlim: 64 net.inet6.ip6.maxfragpackets: 2048 net.inet6.ip6.accept_rtadv: 1 net.inet6.ip6.keepfaith: 0 net.inet6.ip6.log_interval: 5 net.inet6.ip6.hdrnestlimit: 15 net.inet6.ip6.dad_count: 1 net.inet6.ip6.auto_flowlabel: 1 net.inet6.ip6.defmcasthlim: 1 net.inet6.ip6.gifhlim: 0 net.inet6.ip6.kame_version: 2009/apple-darwin net.inet6.ip6.use_deprecated: 1 net.inet6.ip6.rr_prune: 5 net.inet6.ip6.v6only: 0 net.inet6.ip6.rtexpire: 3600 net.inet6.ip6.rtminexpire: 10 net.inet6.ip6.rtmaxcache: 128 net.inet6.ip6.use_tempaddr: 1 net.inet6.ip6.temppltime: 86400 net.inet6.ip6.tempvltime: 604800 net.inet6.ip6.auto_linklocal: 1 net.inet6.ip6.prefer_tempaddr: 1 net.inet6.ip6.use_defaultzone: 0 net.inet6.ip6.maxfrags: 4096 net.inet6.ip6.mcast_pmtu: 0 net.inet6.ip6.neighborgcthresh: 1024 net.inet6.ip6.maxifprefixes: 16 net.inet6.ip6.maxifdefrouters: 16 net.inet6.ip6.maxdynroutes: 1024 net.inet6.ip6.fragpackets: 0 net.inet6.ip6.adj_clear_hwcksum: 0 net.inet6.ip6.adj_partial_sum: 1 net.inet6.ip6.input_perf: 0 net.inet6.ip6.input_perf_bins: 0 net.inet6.ip6.check_interface: 1 net.inet6.ip6.checkinterface_debug: 0 net.inet6.ip6.output_perf: 0 net.inet6.ip6.output_perf_bins: 0 net.inet6.ip6.select_srcif_debug: 0 net.inet6.ip6.select_srcaddr_debug: 0 net.inet6.ip6.select_src_expensive_secondary_if: 0 net.inet6.ip6.select_src_strong_end: 1 net.inet6.ip6.mcast.maxgrpsrc: 512 net.inet6.ip6.mcast.maxsocksrc: 128 net.inet6.ip6.mcast.loop: 1 net.inet6.ip6.only_allow_rfc4193_prefixes: 0 net.inet6.ip6.clat_debug: 0 net.inet6.ip6.maxchainsent: 50 net.inet6.ip6.dad_enhanced: 1 net.inet6.ipsec6.def_policy: 1 net.inet6.ipsec6.esp_trans_deflev: 1 net.inet6.ipsec6.esp_net_deflev: 1 net.inet6.ipsec6.ah_trans_deflev: 1 net.inet6.ipsec6.ah_net_deflev: 1 net.inet6.ipsec6.ecn: 0 net.inet6.ipsec6.debug: 0 net.inet6.ipsec6.esp_randpad: -1 net.inet6.icmp6.rediraccept: 1 net.inet6.icmp6.redirtimeout: 600 net.inet6.icmp6.nd6_prune: 1 net.inet6.icmp6.nd6_delay: 5 net.inet6.icmp6.nd6_umaxtries: 3 net.inet6.icmp6.nd6_mmaxtries: 3 net.inet6.icmp6.nd6_useloopback: 1 net.inet6.icmp6.nodeinfo: 3 net.inet6.icmp6.errppslimit: 500 net.inet6.icmp6.nd6_debug: 0 net.inet6.icmp6.nd6_accept_6to4: 1 net.inet6.icmp6.nd6_optimistic_dad: 63 net.inet6.icmp6.nd6_onlink_ns_rfc4861: 0 net.inet6.icmp6.nd6_prune_lazy: 5 net.inet6.icmp6.rappslimit: 10 net.inet6.icmp6.nd6_llreach_base: 30 net.inet6.icmp6.nd6_maxsolstgt: 8 net.inet6.icmp6.nd6_maxproxiedsol: 4 net.inet6.icmp6.prproxy_cnt: 0 net.inet6.mld.gsrdelay: 10 net.inet6.mld.v1enable: 1 net.inet6.mld.v2enable: 1 net.inet6.mld.use_allow: 1 net.inet6.mld.debug: 0 net.inet6.send.opmode: 1 net.inet6.send.opstate: 1 net.systm.kctl.autorcvbufmax: 262144 net.systm.kctl.autorcvbufhigh: 0 net.systm.kctl.debug: 0 net.ndrv_multi_max_count: 1024 net.statistics_privcheck: 0 net.stats.debug: 0 net.stats.sendspace: 2048 net.stats.recvspace: 8192 net.utun.max_pending_input: 512 net.utun.ring_size: 64 net.utun.tx_fsw_ring_size: 64 net.utun.rx_fsw_ring_size: 128 net.ipsec.verify_interface_creation: 0 net.ipsec.max_pending_input: 512 net.ipsec.ring_size: 64 net.ipsec.tx_fsw_ring_size: 64 net.ipsec.rx_fsw_ring_size: 128 net.ipsec.debug: 0 net.necp.drop_all_level: 0 net.necp.debug: 0 net.necp.pass_loopback: 1 net.necp.pass_keepalives: 1 net.necp.socket_policy_count: 20 net.necp.socket_non_app_policy_count: 20 net.necp.ip_policy_count: 8 net.necp.session_count: 6 net.necp.client_fd_count: 106 net.necp.client_count: 82 net.necp.arena_count: 0 net.necp.nexus_flow_count: 0 net.necp.socket_flow_count: 13 net.necp.if_flow_count: 0 net.necp.observer_fd_count: 0 net.necp.observer_message_limit: 256 net.necp.sysctl_arena_count: 0 net.necp.drop_unentitled_level: 0 net.necp.pass_interpose: 1 net.necp.drop_dest_debug: 0 net.netagent.debug: 5 net.netagent.registered_count: 28 net.netagent.active_count: 26 net.cfil.log: 3 net.cfil.debug: 1 net.cfil.sock_attached_count: 0 net.cfil.active_count: 0 net.cfil.close_wait_timeout: 1000 net.cfil.sbtrim: 1 net.restricted_port.enforced: 1 net.restricted_port.verbose: 0 net.classq.verbose: 0 net.classq.sfb.holdtime: 0 net.classq.sfb.pboxtime: 0 net.classq.sfb.hinterval: 0 net.classq.sfb.increment: 82 net.classq.sfb.decrement: 16 net.classq.sfb.allocation: 0 net.classq.sfb.ratelimit: 0 net.classq.target_qdelay: 0 net.classq.update_interval: 0 net.pktsched.verbose: 0 net.qos.reset_dscp_to_wifi_ac_map: 0 net.qos.verbose: 0 net.qos.policy.restricted: 0 net.qos.policy.restrict_avapps: 0 net.qos.policy.wifi_enabled: 0 net.qos.policy.capable_enabled: 0 net.mpklog.enabled: 1 net.mpklog.type: 0 net.mpklog.version: 1 net.alf.loglevel: 55 net.alf.perm: 1 net.alf.defaultaction: 1 net.alf.mqcount: 0 net.smb.fs.version: 304400 net.smb.fs.loglevel: 0 net.smb.fs.kern_deadtimer: 60 net.smb.fs.kern_hard_deadtimer: 600 net.smb.fs.kern_soft_deadtimer: 30 net.smb.fs.tcpsndbuf: 8388608 net.smb.fs.tcprcvbuf: 8388608 net.smb.fs.maxwrite: 8388608 net.smb.fs.maxread: 8388608 net.smb.fs.maxsegreadsize: 8388608 net.smb.fs.maxsegwritesize: 8388608 debug.lowpri_throttle_max_iosize: 131072 debug.lowpri_throttle_tier1_window_msecs: 25 debug.lowpri_throttle_tier2_window_msecs: 100 debug.lowpri_throttle_tier3_window_msecs: 500 debug.lowpri_throttle_tier1_io_period_msecs: 40 debug.lowpri_throttle_tier2_io_period_msecs: 85 debug.lowpri_throttle_tier3_io_period_msecs: 200 debug.lowpri_throttle_tier1_io_period_ssd_msecs: 5 debug.lowpri_throttle_tier2_io_period_ssd_msecs: 15 debug.lowpri_throttle_tier3_io_period_ssd_msecs: 25 debug.lowpri_throttle_enabled: 1 debug.bpf_bufsize: 4096 debug.bpf_maxbufsize: 524288 debug.bpf_maxdevices: 256 debug.bpf_wantpktap: 0 debug.bpf_debug: 0 debug.sched: 2 debug.toggle_address_reuse: 0 debug.kextlog: 4083 debug.iotrace: 0 debug.noidle: 0 debug.darkwake: 3 debug.swd_panic: 1 debug.swd_timeout: 0 debug.swd_wake_timeout: 0 debug.swd_sleep_timeout: 0 debug.acpi_flags: 0 debug.acpi_layer: 0 debug.acpi_level: 0 debug.iokit: 0 debug.batman: 3 debug.ioppf: 0 debug.intelfb.graphicsTracePointEnable: 0 debug.intelfb.IGInterruptControl: 0 debug.intelfb.fLastRequestedPState: 0 debug.intelfb.forceSlicesGTx: 0 debug.intelfb.forceSlicesEUx: 0 debug.intelfb.sliceInfo: 8 debug.intelfb.euInfo: 8 debug.intelfb.testCase: 0 debug.intelfb.temp0: 0 debug.intelfb.temp1: 0 debug.intelfb.temp2: 0 debug.intelfb.temp3: 0 debug.intelfb.temp4: 0 debug.intelfb.FakeType2Dongle: 0 debug.intelfb.forceDither: 0 debug.intelfb.enableDECounting: 0 debug.intelfb.enableGTHWFreqRead: 0 debug.agpm.LogLevel: 2 debug.intel.kdctlVersion: 2004312080 debug.intel.graphicsTracePointEnable: 0 debug.intel.IGInterruptControl: 0 debug.intel.perfEventEnable: 0 debug.intel.dtraceEnable: 0 debug.intel.oaEnable: 1 debug.intel.gpuUsageEnables: 15 debug.intel.gpuUsageEnablesCheck: 0 debug.intel.flipCount: 3139815 debug.intel.swapCount: 0 debug.intel.ringTakeSample: 0 debug.intel.ringOnSample: 0 debug.intel.GlobalUsageTotal_Busy_nSec: 0 debug.intel.GlobalUsageTotal_nSec: 0 debug.intel.ringMainUsage: 0 debug.intel.ringMediaUsage: 0 debug.intel.ringBlitUsage: 0 debug.intel.ringVEBoxUsage: 0 debug.intel.ringMain_nSec: 0 debug.intel.ringMedia_nSec: 0 debug.intel.ringBlit_nSec: 0 debug.intel.ringVEBox_nSec: 0 debug.intel.mSecCalcGPUBusy: 1000 debug.intel.schedPriCreditsHigh: -1 debug.intel.schedPriCreditsNormalHigh: -1 debug.intel.schedPriCreditsNormal: -1 debug.intel.schedPriCreditsLow: -1 debug.intel.schedPriPreemption: 1 debug.intel.schedPriElevatePID: -1 debug.intel.schedEnableThrottleOverride: 0 debug.intel.schedThrottleLowPriByVal: -1 debug.intel.schedThrottleNormalPriByVal: -1 debug.intel.schedThrottleNormalHighPriByVal: -1 debug.intel.schedThrottleHighPriByVal: -1 debug.intel.graphicsFirmwareTracePointEnable: 0 debug.intel.telemetryUsageReportmSec: 1000 debug.intel.telemetryVersion: 1 debug.intel.telemetryConfig: 4102 debug.intel.telemetryMode: 0 debug.intel.telemetrySampleLocations: 0 debug.intel.telemetryStartFrame: 0 debug.intel.telemetryStopFrame: 0 debug.intel.telemetryNumFrame: 0 debug.intel.telemetryTestCase: 0 debug.intel.telemetrySpot1: 0 debug.intel.telemetryStatPasses: 0 debug.intel.telemetryAltConfig: 0 debug.intel.temp0: 0 debug.intel.temp1: 0 debug.intel.temp2: 0 debug.intel.temp3: 0 debug.intel.temp4: 0 hw.ncpu: 8 hw.byteorder: 1234 hw.memsize: 17179869184 hw.activecpu: 8 hw.physicalcpu: 4 hw.physicalcpu_max: 4 hw.logicalcpu: 8 hw.logicalcpu_max: 8 hw.cputype: 7 hw.cpusubtype: 8 hw.cpu64bit_capable: 1 hw.cpufamily: 260141638 hw.cacheconfig: 8 2 2 8 0 0 0 0 0 0 hw.cachesize: 17179869184 32768 262144 8388608 0 0 0 0 0 0 hw.pagesize: 4096 hw.pagesize32: 4096 hw.busfrequency: 400000000 hw.busfrequency_min: 400000000 hw.busfrequency_max: 400000000 hw.cpufrequency: 2800000000 hw.cpufrequency_min: 2800000000 hw.cpufrequency_max: 2800000000 hw.cachelinesize: 64 hw.l1icachesize: 32768 hw.l1dcachesize: 32768 hw.l2cachesize: 262144 hw.l3cachesize: 8388608 hw.tbfrequency: 1000000000 hw.packages: 1 hw.optional.floatingpoint: 1 hw.optional.mmx: 1 hw.optional.sse: 1 hw.optional.sse2: 1 hw.optional.sse3: 1 hw.optional.supplementalsse3: 1 hw.optional.sse4_1: 1 hw.optional.sse4_2: 1 hw.optional.x86_64: 1 hw.optional.aes: 1 hw.optional.avx1_0: 1 hw.optional.rdrand: 1 hw.optional.f16c: 1 hw.optional.enfstrg: 1 hw.optional.fma: 1 hw.optional.avx2_0: 1 hw.optional.bmi1: 1 hw.optional.bmi2: 1 hw.optional.rtm: 0 hw.optional.hle: 0 hw.optional.adx: 1 hw.optional.mpx: 0 hw.optional.sgx: 0 hw.optional.avx512f: 0 hw.optional.avx512cd: 0 hw.optional.avx512dq: 0 hw.optional.avx512bw: 0 hw.optional.avx512vl: 0 hw.optional.avx512ifma: 0 hw.optional.avx512vbmi: 0 hw.targettype: Mac hw.cputhreadtype: 1 machdep.user_idle_level: 0 machdep.cpu.max_basic: 22 machdep.cpu.max_ext: 2147483656 machdep.cpu.vendor: GenuineIntel machdep.cpu.brand_string: Intel(R) Core(TM) i7-8569U CPU @ 2.80GHz machdep.cpu.family: 6 machdep.cpu.model: 142 machdep.cpu.extmodel: 8 machdep.cpu.extfamily: 0 machdep.cpu.stepping: 10 machdep.cpu.feature_bits: 9221959987971750911 machdep.cpu.leaf7_feature_bits: 43804591 0 machdep.cpu.leaf7_feature_bits_edx: 2617255424 machdep.cpu.extfeature_bits: 1241984796928 machdep.cpu.signature: 526058 machdep.cpu.brand: 0 machdep.cpu.features: FPU VME DE PSE TSC MSR PAE MCE CX8 APIC SEP MTRR PGE MCA CMOV PAT PSE36 CLFSH DS ACPI MMX FXSR SSE SSE2 SS HTT TM PBE SSE3 PCLMULQDQ DTES64 MON DSCPL VMX EST TM2 SSSE3 FMA CX16 TPR PDCM SSE4.1 SSE4.2 x2APIC MOVBE POPCNT AES PCID XSAVE OSXSAVE SEGLIM64 TSCTMR AVX1.0 RDRAND F16C machdep.cpu.leaf7_features: RDWRFSGS TSC_THREAD_OFFSET SGX BMI1 AVX2 SMEP BMI2 ERMS INVPCID FPU_CSDS MPX RDSEED ADX SMAP CLFSOPT IPT MDCLEAR TSXFA IBRS STIBP L1DF SSBD machdep.cpu.extfeatures: SYSCALL XD 1GBPAGE EM64T LAHF LZCNT PREFETCHW RDTSCP TSCI machdep.cpu.logical_per_package: 16 machdep.cpu.cores_per_package: 8 machdep.cpu.microcode_version: 224 machdep.cpu.processor_flag: 6 machdep.cpu.mwait.linesize_min: 64 machdep.cpu.mwait.linesize_max: 64 machdep.cpu.mwait.extensions: 3 machdep.cpu.mwait.sub_Cstates: 286531872 machdep.cpu.thermal.sensor: 1 machdep.cpu.thermal.dynamic_acceleration: 1 machdep.cpu.thermal.invariant_APIC_timer: 1 machdep.cpu.thermal.thresholds: 2 machdep.cpu.thermal.ACNT_MCNT: 1 machdep.cpu.thermal.core_power_limits: 1 machdep.cpu.thermal.fine_grain_clock_mod: 1 machdep.cpu.thermal.package_thermal_intr: 1 machdep.cpu.thermal.hardware_feedback: 0 machdep.cpu.thermal.energy_policy: 1 machdep.cpu.xsave.extended_state: 31 832 1088 0 machdep.cpu.xsave.extended_state1: 15 832 256 0 machdep.cpu.arch_perf.version: 4 machdep.cpu.arch_perf.number: 4 machdep.cpu.arch_perf.width: 48 machdep.cpu.arch_perf.events_number: 7 machdep.cpu.arch_perf.events: 0 machdep.cpu.arch_perf.fixed_number: 3 machdep.cpu.arch_perf.fixed_width: 48 machdep.cpu.cache.linesize: 64 machdep.cpu.cache.L2_associativity: 4 machdep.cpu.cache.size: 256 machdep.cpu.tlb.inst.large: 8 machdep.cpu.tlb.data.small: 64 machdep.cpu.tlb.data.small_level1: 64 machdep.cpu.address_bits.physical: 39 machdep.cpu.address_bits.virtual: 48 machdep.cpu.core_count: 4 machdep.cpu.thread_count: 8 machdep.cpu.tsc_ccc.numerator: 234 machdep.cpu.tsc_ccc.denominator: 2 machdep.vectors.timer: 221 machdep.vectors.IPI: 222 machdep.pmap.hashwalks: 448529922 machdep.pmap.hashcnts: 457844743 machdep.pmap.hashmax: 18 machdep.pmap.kernel_text_ps: 2097152 machdep.pmap.kern_pv_reserve: 16000 machdep.memmap.Conventional: 17018568704 machdep.memmap.RuntimeServices: 1511424 machdep.memmap.ACPIReclaim: 393216 machdep.memmap.ACPINVS: 790528 machdep.memmap.PalCode: 0 machdep.memmap.Reserved: 125050880 machdep.memmap.Unusable: 0 machdep.memmap.Other: 0 machdep.tsc.frequency: 2808000000 machdep.tsc.deep_idle_rebase: 1 machdep.tsc.at_boot: 28609515 machdep.tsc.rebase_abs_time: 6352478848 machdep.tsc.nanotime.tsc_base: 17866370160 machdep.tsc.nanotime.ns_base: 0 machdep.tsc.nanotime.scale: 1529546757 machdep.tsc.nanotime.shift: 0 machdep.tsc.nanotime.generation: 2 machdep.misc.fast_uexc_support: 1 machdep.misc.panic_restart_timeout: 1266874889 machdep.misc.interrupt_latency_max: 0x3 0xde 0x501062 machdep.misc.timer_queue_trace: machdep.misc.nmis: 0 machdep.xcpm.mode: 1 machdep.xcpm.pcps_mode: 0 machdep.xcpm.hard_plimit_max_100mhz_ratio: 47 machdep.xcpm.hard_plimit_min_100mhz_ratio: 4 machdep.xcpm.soft_plimit_max_100mhz_ratio: 47 machdep.xcpm.soft_plimit_min_100mhz_ratio: 4 machdep.xcpm.tuib_plimit_max_100mhz_ratio: 47 machdep.xcpm.tuib_plimit_min_100mhz_ratio: 4 machdep.xcpm.tuib_enabled: 0 machdep.xcpm.power_source: 0 machdep.xcpm.bootplim: 0 machdep.xcpm.bootpst: 47 machdep.xcpm.tuib_ns: 0 machdep.xcpm.vectors_loaded_count: 1 machdep.xcpm.ratio_change_ratelimit_ns: 3000000 machdep.xcpm.ratio_changes_total: 135152150 machdep.xcpm.maxbusdelay: 4294967295 machdep.xcpm.maxintdelay: 0 machdep.xcpm.mid_applications: 0 machdep.xcpm.mid_relaxations: 0 machdep.xcpm.mid_mode: 1 machdep.xcpm.mid_cst_control_limit: 0 machdep.xcpm.mid_mode_active: 0 machdep.xcpm.mbd_mode: 1 machdep.xcpm.mbd_applications: 8 machdep.xcpm.mbd_relaxations: 8 machdep.xcpm.forced_idle_ratio: 100 machdep.xcpm.forced_idle_period: 30000000 machdep.xcpm.deep_idle_log: 0 machdep.xcpm.qos_txfr: 1 machdep.xcpm.deep_idle_count: 0 machdep.xcpm.deep_idle_last_stats: n/a machdep.xcpm.deep_idle_total_stats: n/a machdep.xcpm.cpu_thermal_level: 21 machdep.xcpm.gpu_thermal_level: 0 machdep.xcpm.io_thermal_level: 0 machdep.xcpm.io_control_engages: 0 machdep.xcpm.io_control_disengages: 0 machdep.xcpm.io_filtered_reads: 1 machdep.xcpm.pcps_rt_override_mode: 0 machdep.xcpm.io_cst_control_enabled: 1 machdep.xcpm.ring_boost_enabled: 0 machdep.xcpm.io_epp_boost_enabled: 1 machdep.xcpm.epp_override: 0 machdep.xcpm.perf_hints: 0 machdep.xcpm.pcps_rt_override_ns: 0 machdep.eager_timer_evaluations: 211543 machdep.eager_timer_evaluation_max: 1349551 machdep.x86_fp_simd_isr_uses: 0 machdep.uncore_sample_state: 0 machdep.uncore_sample_mask: 1 machdep.uncore_sample_ctl: 0 machdep.uncore_sample_interval_ms: 500 machdep.uncore_pcie_mmio_base: -536870912 audit.session.superuser_set_sflags_mask: 24576 audit.session.superuser_clear_sflags_mask: 24576 audit.session.member_set_sflags_mask: 0 audit.session.member_clear_sflags_mask: 16384 ktrace.state: 0 ktrace.owning_pid: 0 ktrace.background_pid: 0 ktrace.configured_by: kperf.limits.timer_min_period_ns: 20000 kperf.limits.timer_min_bg_period_ns: 1000000 kperf.limits.timer_min_pet_period_ns: 2000000 kperf.limits.timer_min_bg_pet_period_ns: 5000000 kperf.debug_level: 0 security.mac.platform_exec_logging: 0 security.mac.max_slots: 7 security.mac.labelvnodes: 1 security.mac.vnode_label_count: 46468 security.mac.device_enforce: 1 security.mac.pipe_enforce: 1 security.mac.posixsem_enforce: 1 security.mac.posixshm_enforce: 1 security.mac.proc_enforce: 1 security.mac.socket_enforce: 1 security.mac.system_enforce: 1 security.mac.sysvmsg_enforce: 1 security.mac.sysvsem_enforce: 1 security.mac.sysvshm_enforce: 1 security.mac.vm_enforce: 1 security.mac.vnode_enforce: 1 security.mac.endpointsecurity.log_level: 1 security.mac.amfi.force_policy: 0 security.mac.amfi.verbose_logging: 0 security.mac.amfi.hsp_enable: 1 security.mac.sandbox.audio_active: 0 security.mac.sandbox.sentinel: .sb-7f6643ab security.mac.qtn.sandbox_enforce: 1 security.mac.qtn.user_approved_exec: 1 security.mac.asp.cache_entry_count: 2796 security.mac.asp.cache_allocation_count: 6782 security.mac.asp.cache_release_count: 3986 security.mac.asp.exec_hook_work_time: 4076710 security.mac.asp.exec_hook_sleep_time: 71535694 security.mac.asp.exec_hook_count: 720191 security.mac.asp.library_hook_time: 31532084 security.mac.asp.library_sleep_time: 66159283 security.mac.asp.library_hook_count: 36252517 security.mac.asp.pending_evaluation_count: 0 security.mac.asp.active_rule_version: 7040939139898169681 ============================================================================================= TESTING: checkCompilerMacros from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:166) Save the list of CPP macros defined by the C and C++ compiler, does not work for all compilers Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags/conftest.c -E -dM stdout: #define _LP64 1 #define __APPLE_CC__ 6000 #define __APPLE__ 1 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __ATOMIC_RELAXED 0 #define __ATOMIC_RELEASE 3 #define __ATOMIC_SEQ_CST 5 #define __BIGGEST_ALIGNMENT__ 16 #define __BLOCKS__ 1 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __CHAR16_TYPE__ unsigned short #define __CHAR32_TYPE__ unsigned int #define __CHAR_BIT__ 8 #define __CLANG_ATOMIC_BOOL_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR_LOCK_FREE 2 #define __CLANG_ATOMIC_INT_LOCK_FREE 2 #define __CLANG_ATOMIC_LLONG_LOCK_FREE 2 #define __CLANG_ATOMIC_LONG_LOCK_FREE 2 #define __CLANG_ATOMIC_POINTER_LOCK_FREE 2 #define __CLANG_ATOMIC_SHORT_LOCK_FREE 2 #define __CLANG_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __CONSTANT_CFSTRINGS__ 1 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_DENORM_MIN__ 4.9406564584124654e-324 #define __DBL_DIG__ 15 #define __DBL_EPSILON__ 2.2204460492503131e-16 #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_MAX_10_EXP__ 308 #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX__ 1.7976931348623157e+308 #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN__ 2.2250738585072014e-308 #define __DECIMAL_DIG__ __LDBL_DECIMAL_DIG__ #define __DYNAMIC__ 1 #define __ENVIRONMENT_MAC_OS_X_VERSION_MIN_REQUIRED__ 101500 #define __FINITE_MATH_ONLY__ 0 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_DENORM_MIN__ 1.40129846e-45F #define __FLT_DIG__ 6 #define __FLT_EPSILON__ 1.19209290e-7F #define __FLT_EVAL_METHOD__ 0 #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __FLT_MANT_DIG__ 24 #define __FLT_MAX_10_EXP__ 38 #define __FLT_MAX_EXP__ 128 #define __FLT_MAX__ 3.40282347e+38F #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN__ 1.17549435e-38F #define __FLT_RADIX__ 2 #define __FXSR__ 1 #define __GCC_ASM_FLAG_OUTPUTS__ 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_16 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GNUC_GNU_INLINE__ 1 #define __GNUC_MINOR__ 2 #define __GNUC_PATCHLEVEL__ 1 #define __GNUC__ 4 #define __GXX_ABI_VERSION 1002 #define __INT16_C_SUFFIX__ #define __INT16_FMTd__ "hd" #define __INT16_FMTi__ "hi" #define __INT16_MAX__ 32767 #define __INT16_TYPE__ short #define __INT32_C_SUFFIX__ #define __INT32_FMTd__ "d" #define __INT32_FMTi__ "i" #define __INT32_MAX__ 2147483647 #define __INT32_TYPE__ int #define __INT64_C_SUFFIX__ LL #define __INT64_FMTd__ "lld" #define __INT64_FMTi__ "lli" #define __INT64_MAX__ 9223372036854775807LL #define __INT64_TYPE__ long long int #define __INT8_C_SUFFIX__ #define __INT8_FMTd__ "hhd" #define __INT8_FMTi__ "hhi" #define __INT8_MAX__ 127 #define __INT8_TYPE__ signed char #define __INTMAX_C_SUFFIX__ L #define __INTMAX_FMTd__ "ld" #define __INTMAX_FMTi__ "li" #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_TYPE__ long int #define __INTMAX_WIDTH__ 64 #define __INTPTR_FMTd__ "ld" #define __INTPTR_FMTi__ "li" #define __INTPTR_MAX__ 9223372036854775807L #define __INTPTR_TYPE__ long int #define __INTPTR_WIDTH__ 64 #define __INT_FAST16_FMTd__ "hd" #define __INT_FAST16_FMTi__ "hi" #define __INT_FAST16_MAX__ 32767 #define __INT_FAST16_TYPE__ short #define __INT_FAST32_FMTd__ "d" #define __INT_FAST32_FMTi__ "i" #define __INT_FAST32_MAX__ 2147483647 #define __INT_FAST32_TYPE__ int #define __INT_FAST64_FMTd__ "lld" #define __INT_FAST64_FMTi__ "lli" #define __INT_FAST64_MAX__ 9223372036854775807LL #define __INT_FAST64_TYPE__ long long int #define __INT_FAST8_FMTd__ "hhd" #define __INT_FAST8_FMTi__ "hhi" #define __INT_FAST8_MAX__ 127 #define __INT_FAST8_TYPE__ signed char #define __INT_LEAST16_FMTd__ "hd" #define __INT_LEAST16_FMTi__ "hi" #define __INT_LEAST16_MAX__ 32767 #define __INT_LEAST16_TYPE__ short #define __INT_LEAST32_FMTd__ "d" #define __INT_LEAST32_FMTi__ "i" #define __INT_LEAST32_MAX__ 2147483647 #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_FMTd__ "lld" #define __INT_LEAST64_FMTi__ "lli" #define __INT_LEAST64_MAX__ 9223372036854775807LL #define __INT_LEAST64_TYPE__ long long int #define __INT_LEAST8_FMTd__ "hhd" #define __INT_LEAST8_FMTi__ "hhi" #define __INT_LEAST8_MAX__ 127 #define __INT_LEAST8_TYPE__ signed char #define __INT_MAX__ 2147483647 #define __LDBL_DECIMAL_DIG__ 21 #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_DIG__ 18 #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_MAX_10_EXP__ 4932 #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LITTLE_ENDIAN__ 1 #define __LONG_LONG_MAX__ 9223372036854775807LL #define __LONG_MAX__ 9223372036854775807L #define __LP64__ 1 #define __MACH__ 1 #define __MMX__ 1 #define __NO_INLINE__ 1 #define __NO_MATH_INLINES 1 #define __OBJC_BOOL_IS_BOOL 0 #define __OPENCL_MEMORY_SCOPE_ALL_SVM_DEVICES 3 #define __OPENCL_MEMORY_SCOPE_DEVICE 2 #define __OPENCL_MEMORY_SCOPE_SUB_GROUP 4 #define __OPENCL_MEMORY_SCOPE_WORK_GROUP 1 #define __OPENCL_MEMORY_SCOPE_WORK_ITEM 0 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_PDP_ENDIAN__ 3412 #define __PIC__ 2 #define __POINTER_WIDTH__ 64 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __PTRDIFF_FMTd__ "ld" #define __PTRDIFF_FMTi__ "li" #define __PTRDIFF_MAX__ 9223372036854775807L #define __PTRDIFF_TYPE__ long int #define __PTRDIFF_WIDTH__ 64 #define __REGISTER_PREFIX__ #define __SCHAR_MAX__ 127 #define __SEG_FS 1 #define __SEG_GS 1 #define __SHRT_MAX__ 32767 #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_WIDTH__ 32 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_INT128__ 16 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_LONG__ 8 #define __SIZEOF_POINTER__ 8 #define __SIZEOF_PTRDIFF_T__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_SIZE_T__ 8 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_WINT_T__ 4 #define __SIZE_FMTX__ "lX" #define __SIZE_FMTo__ "lo" #define __SIZE_FMTu__ "lu" #define __SIZE_FMTx__ "lx" #define __SIZE_MAX__ 18446744073709551615UL #define __SIZE_TYPE__ long unsigned int #define __SIZE_WIDTH__ 64 #define __SSE2_MATH__ 1 #define __SSE2__ 1 #define __SSE3__ 1 #define __SSE4_1__ 1 #define __SSE_MATH__ 1 #define __SSE__ 1 #define __SSP__ 1 #define __SSSE3__ 1 #define __STDC_HOSTED__ 1 #define __STDC_NO_THREADS__ 1 #define __STDC_UTF_16__ 1 #define __STDC_UTF_32__ 1 #define __STDC_VERSION__ 201710L #define __STDC__ 1 #define __UINT16_C_SUFFIX__ #define __UINT16_FMTX__ "hX" #define __UINT16_FMTo__ "ho" #define __UINT16_FMTu__ "hu" #define __UINT16_FMTx__ "hx" #define __UINT16_MAX__ 65535 #define __UINT16_TYPE__ unsigned short #define __UINT32_C_SUFFIX__ U #define __UINT32_FMTX__ "X" #define __UINT32_FMTo__ "o" #define __UINT32_FMTu__ "u" #define __UINT32_FMTx__ "x" #define __UINT32_MAX__ 4294967295U #define __UINT32_TYPE__ unsigned int #define __UINT64_C_SUFFIX__ ULL #define __UINT64_FMTX__ "llX" #define __UINT64_FMTo__ "llo" #define __UINT64_FMTu__ "llu" #define __UINT64_FMTx__ "llx" #define __UINT64_MAX__ 18446744073709551615ULL #define __UINT64_TYPE__ long long unsigned int #define __UINT8_C_SUFFIX__ #define __UINT8_FMTX__ "hhX" #define __UINT8_FMTo__ "hho" #define __UINT8_FMTu__ "hhu" #define __UINT8_FMTx__ "hhx" #define __UINT8_MAX__ 255 #define __UINT8_TYPE__ unsigned char #define __UINTMAX_C_SUFFIX__ UL #define __UINTMAX_FMTX__ "lX" #define __UINTMAX_FMTo__ "lo" #define __UINTMAX_FMTu__ "lu" #define __UINTMAX_FMTx__ "lx" #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_TYPE__ long unsigned int #define __UINTMAX_WIDTH__ 64 #define __UINTPTR_FMTX__ "lX" #define __UINTPTR_FMTo__ "lo" #define __UINTPTR_FMTu__ "lu" #define __UINTPTR_FMTx__ "lx" #define __UINTPTR_MAX__ 18446744073709551615UL #define __UINTPTR_TYPE__ long unsigned int #define __UINTPTR_WIDTH__ 64 #define __UINT_FAST16_FMTX__ "hX" #define __UINT_FAST16_FMTo__ "ho" #define __UINT_FAST16_FMTu__ "hu" #define __UINT_FAST16_FMTx__ "hx" #define __UINT_FAST16_MAX__ 65535 #define __UINT_FAST16_TYPE__ unsigned short #define __UINT_FAST32_FMTX__ "X" #define __UINT_FAST32_FMTo__ "o" #define __UINT_FAST32_FMTu__ "u" #define __UINT_FAST32_FMTx__ "x" #define __UINT_FAST32_MAX__ 4294967295U #define __UINT_FAST32_TYPE__ unsigned int #define __UINT_FAST64_FMTX__ "llX" #define __UINT_FAST64_FMTo__ "llo" #define __UINT_FAST64_FMTu__ "llu" #define __UINT_FAST64_FMTx__ "llx" #define __UINT_FAST64_MAX__ 18446744073709551615ULL #define __UINT_FAST64_TYPE__ long long unsigned int #define __UINT_FAST8_FMTX__ "hhX" #define __UINT_FAST8_FMTo__ "hho" #define __UINT_FAST8_FMTu__ "hhu" #define __UINT_FAST8_FMTx__ "hhx" #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_LEAST16_FMTX__ "hX" #define __UINT_LEAST16_FMTo__ "ho" #define __UINT_LEAST16_FMTu__ "hu" #define __UINT_LEAST16_FMTx__ "hx" #define __UINT_LEAST16_MAX__ 65535 #define __UINT_LEAST16_TYPE__ unsigned short #define __UINT_LEAST32_FMTX__ "X" #define __UINT_LEAST32_FMTo__ "o" #define __UINT_LEAST32_FMTu__ "u" #define __UINT_LEAST32_FMTx__ "x" #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_FMTX__ "llX" #define __UINT_LEAST64_FMTo__ "llo" #define __UINT_LEAST64_FMTu__ "llu" #define __UINT_LEAST64_FMTx__ "llx" #define __UINT_LEAST64_MAX__ 18446744073709551615ULL #define __UINT_LEAST64_TYPE__ long long unsigned int #define __UINT_LEAST8_FMTX__ "hhX" #define __UINT_LEAST8_FMTo__ "hho" #define __UINT_LEAST8_FMTu__ "hhu" #define __UINT_LEAST8_FMTx__ "hhx" #define __UINT_LEAST8_MAX__ 255 #define __UINT_LEAST8_TYPE__ unsigned char #define __USER_LABEL_PREFIX__ _ #define __VERSION__ "Clang 11.1.0" #define __WCHAR_MAX__ 2147483647 #define __WCHAR_TYPE__ int #define __WCHAR_WIDTH__ 32 #define __WINT_MAX__ 2147483647 #define __WINT_TYPE__ int #define __WINT_WIDTH__ 32 #define __amd64 1 #define __amd64__ 1 #define __block __attribute__((__blocks__(byref))) #define __clang__ 1 #define __clang_major__ 11 #define __clang_minor__ 1 #define __clang_patchlevel__ 0 #define __clang_version__ "11.1.0 " #define __code_model_small__ 1 #define __core2 1 #define __core2__ 1 #define __llvm__ 1 #define __nonnull _Nonnull #define __null_unspecified _Null_unspecified #define __nullable _Nullable #define __pic__ 2 #define __seg_fs __attribute__((address_space(257))) #define __seg_gs __attribute__((address_space(256))) #define __strong #define __tune_core2__ 1 #define __unsafe_unretained #define __weak __attribute__((objc_gc(weak))) #define __x86_64 1 #define __x86_64__ 1 Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags/conftest.cc -E -dM stdout: #define _LP64 1 #define __APPLE_CC__ 6000 #define __APPLE__ 1 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __ATOMIC_RELAXED 0 #define __ATOMIC_RELEASE 3 #define __ATOMIC_SEQ_CST 5 #define __BIGGEST_ALIGNMENT__ 16 #define __BLOCKS__ 1 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __CHAR16_TYPE__ unsigned short #define __CHAR32_TYPE__ unsigned int #define __CHAR_BIT__ 8 #define __CLANG_ATOMIC_BOOL_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR_LOCK_FREE 2 #define __CLANG_ATOMIC_INT_LOCK_FREE 2 #define __CLANG_ATOMIC_LLONG_LOCK_FREE 2 #define __CLANG_ATOMIC_LONG_LOCK_FREE 2 #define __CLANG_ATOMIC_POINTER_LOCK_FREE 2 #define __CLANG_ATOMIC_SHORT_LOCK_FREE 2 #define __CLANG_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __CONSTANT_CFSTRINGS__ 1 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_DENORM_MIN__ 4.9406564584124654e-324 #define __DBL_DIG__ 15 #define __DBL_EPSILON__ 2.2204460492503131e-16 #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_MAX_10_EXP__ 308 #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX__ 1.7976931348623157e+308 #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN__ 2.2250738585072014e-308 #define __DECIMAL_DIG__ __LDBL_DECIMAL_DIG__ #define __DYNAMIC__ 1 #define __ENVIRONMENT_MAC_OS_X_VERSION_MIN_REQUIRED__ 101500 #define __EXCEPTIONS 1 #define __FINITE_MATH_ONLY__ 0 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_DENORM_MIN__ 1.40129846e-45F #define __FLT_DIG__ 6 #define __FLT_EPSILON__ 1.19209290e-7F #define __FLT_EVAL_METHOD__ 0 #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __FLT_MANT_DIG__ 24 #define __FLT_MAX_10_EXP__ 38 #define __FLT_MAX_EXP__ 128 #define __FLT_MAX__ 3.40282347e+38F #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN__ 1.17549435e-38F #define __FLT_RADIX__ 2 #define __FXSR__ 1 #define __GCC_ASM_FLAG_OUTPUTS__ 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_16 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GLIBCXX_BITSIZE_INT_N_0 128 #define __GLIBCXX_TYPE_INT_N_0 __int128 #define __GNUC_GNU_INLINE__ 1 #define __GNUC_MINOR__ 2 #define __GNUC_PATCHLEVEL__ 1 #define __GNUC__ 4 #define __GNUG__ 4 #define __GXX_ABI_VERSION 1002 #define __GXX_EXPERIMENTAL_CXX0X__ 1 #define __GXX_RTTI 1 #define __GXX_WEAK__ 1 #define __INT16_C_SUFFIX__ #define __INT16_FMTd__ "hd" #define __INT16_FMTi__ "hi" #define __INT16_MAX__ 32767 #define __INT16_TYPE__ short #define __INT32_C_SUFFIX__ #define __INT32_FMTd__ "d" #define __INT32_FMTi__ "i" #define __INT32_MAX__ 2147483647 #define __INT32_TYPE__ int #define __INT64_C_SUFFIX__ LL #define __INT64_FMTd__ "lld" #define __INT64_FMTi__ "lli" #define __INT64_MAX__ 9223372036854775807LL #define __INT64_TYPE__ long long int #define __INT8_C_SUFFIX__ #define __INT8_FMTd__ "hhd" #define __INT8_FMTi__ "hhi" #define __INT8_MAX__ 127 #define __INT8_TYPE__ signed char #define __INTMAX_C_SUFFIX__ L #define __INTMAX_FMTd__ "ld" #define __INTMAX_FMTi__ "li" #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_TYPE__ long int #define __INTMAX_WIDTH__ 64 #define __INTPTR_FMTd__ "ld" #define __INTPTR_FMTi__ "li" #define __INTPTR_MAX__ 9223372036854775807L #define __INTPTR_TYPE__ long int #define __INTPTR_WIDTH__ 64 #define __INT_FAST16_FMTd__ "hd" #define __INT_FAST16_FMTi__ "hi" #define __INT_FAST16_MAX__ 32767 #define __INT_FAST16_TYPE__ short #define __INT_FAST32_FMTd__ "d" #define __INT_FAST32_FMTi__ "i" #define __INT_FAST32_MAX__ 2147483647 #define __INT_FAST32_TYPE__ int #define __INT_FAST64_FMTd__ "lld" #define __INT_FAST64_FMTi__ "lli" #define __INT_FAST64_MAX__ 9223372036854775807LL #define __INT_FAST64_TYPE__ long long int #define __INT_FAST8_FMTd__ "hhd" #define __INT_FAST8_FMTi__ "hhi" #define __INT_FAST8_MAX__ 127 #define __INT_FAST8_TYPE__ signed char #define __INT_LEAST16_FMTd__ "hd" #define __INT_LEAST16_FMTi__ "hi" #define __INT_LEAST16_MAX__ 32767 #define __INT_LEAST16_TYPE__ short #define __INT_LEAST32_FMTd__ "d" #define __INT_LEAST32_FMTi__ "i" #define __INT_LEAST32_MAX__ 2147483647 #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_FMTd__ "lld" #define __INT_LEAST64_FMTi__ "lli" #define __INT_LEAST64_MAX__ 9223372036854775807LL #define __INT_LEAST64_TYPE__ long long int #define __INT_LEAST8_FMTd__ "hhd" #define __INT_LEAST8_FMTi__ "hhi" #define __INT_LEAST8_MAX__ 127 #define __INT_LEAST8_TYPE__ signed char #define __INT_MAX__ 2147483647 #define __LDBL_DECIMAL_DIG__ 21 #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_DIG__ 18 #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_MAX_10_EXP__ 4932 #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LITTLE_ENDIAN__ 1 #define __LONG_LONG_MAX__ 9223372036854775807LL #define __LONG_MAX__ 9223372036854775807L #define __LP64__ 1 #define __MACH__ 1 #define __MMX__ 1 #define __NO_INLINE__ 1 #define __NO_MATH_INLINES 1 #define __OBJC_BOOL_IS_BOOL 0 #define __OPENCL_MEMORY_SCOPE_ALL_SVM_DEVICES 3 #define __OPENCL_MEMORY_SCOPE_DEVICE 2 #define __OPENCL_MEMORY_SCOPE_SUB_GROUP 4 #define __OPENCL_MEMORY_SCOPE_WORK_GROUP 1 #define __OPENCL_MEMORY_SCOPE_WORK_ITEM 0 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_PDP_ENDIAN__ 3412 #define __PIC__ 2 #define __POINTER_WIDTH__ 64 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __PTRDIFF_FMTd__ "ld" #define __PTRDIFF_FMTi__ "li" #define __PTRDIFF_MAX__ 9223372036854775807L #define __PTRDIFF_TYPE__ long int #define __PTRDIFF_WIDTH__ 64 #define __REGISTER_PREFIX__ #define __SCHAR_MAX__ 127 #define __SEG_FS 1 #define __SEG_GS 1 #define __SHRT_MAX__ 32767 #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_WIDTH__ 32 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_INT128__ 16 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_LONG__ 8 #define __SIZEOF_POINTER__ 8 #define __SIZEOF_PTRDIFF_T__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_SIZE_T__ 8 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_WINT_T__ 4 #define __SIZE_FMTX__ "lX" #define __SIZE_FMTo__ "lo" #define __SIZE_FMTu__ "lu" #define __SIZE_FMTx__ "lx" #define __SIZE_MAX__ 18446744073709551615UL #define __SIZE_TYPE__ long unsigned int #define __SIZE_WIDTH__ 64 #define __SSE2_MATH__ 1 #define __SSE2__ 1 #define __SSE3__ 1 #define __SSE4_1__ 1 #define __SSE_MATH__ 1 #define __SSE__ 1 #define __SSP__ 1 #define __SSSE3__ 1 #define __STDCPP_DEFAULT_NEW_ALIGNMENT__ 16UL #define __STDC_HOSTED__ 1 #define __STDC_NO_THREADS__ 1 #define __STDC_UTF_16__ 1 #define __STDC_UTF_32__ 1 #define __STDC__ 1 #define __UINT16_C_SUFFIX__ #define __UINT16_FMTX__ "hX" #define __UINT16_FMTo__ "ho" #define __UINT16_FMTu__ "hu" #define __UINT16_FMTx__ "hx" #define __UINT16_MAX__ 65535 #define __UINT16_TYPE__ unsigned short #define __UINT32_C_SUFFIX__ U #define __UINT32_FMTX__ "X" #define __UINT32_FMTo__ "o" #define __UINT32_FMTu__ "u" #define __UINT32_FMTx__ "x" #define __UINT32_MAX__ 4294967295U #define __UINT32_TYPE__ unsigned int #define __UINT64_C_SUFFIX__ ULL #define __UINT64_FMTX__ "llX" #define __UINT64_FMTo__ "llo" #define __UINT64_FMTu__ "llu" #define __UINT64_FMTx__ "llx" #define __UINT64_MAX__ 18446744073709551615ULL #define __UINT64_TYPE__ long long unsigned int #define __UINT8_C_SUFFIX__ #define __UINT8_FMTX__ "hhX" #define __UINT8_FMTo__ "hho" #define __UINT8_FMTu__ "hhu" #define __UINT8_FMTx__ "hhx" #define __UINT8_MAX__ 255 #define __UINT8_TYPE__ unsigned char #define __UINTMAX_C_SUFFIX__ UL #define __UINTMAX_FMTX__ "lX" #define __UINTMAX_FMTo__ "lo" #define __UINTMAX_FMTu__ "lu" #define __UINTMAX_FMTx__ "lx" #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_TYPE__ long unsigned int #define __UINTMAX_WIDTH__ 64 #define __UINTPTR_FMTX__ "lX" #define __UINTPTR_FMTo__ "lo" #define __UINTPTR_FMTu__ "lu" #define __UINTPTR_FMTx__ "lx" #define __UINTPTR_MAX__ 18446744073709551615UL #define __UINTPTR_TYPE__ long unsigned int #define __UINTPTR_WIDTH__ 64 #define __UINT_FAST16_FMTX__ "hX" #define __UINT_FAST16_FMTo__ "ho" #define __UINT_FAST16_FMTu__ "hu" #define __UINT_FAST16_FMTx__ "hx" #define __UINT_FAST16_MAX__ 65535 #define __UINT_FAST16_TYPE__ unsigned short #define __UINT_FAST32_FMTX__ "X" #define __UINT_FAST32_FMTo__ "o" #define __UINT_FAST32_FMTu__ "u" #define __UINT_FAST32_FMTx__ "x" #define __UINT_FAST32_MAX__ 4294967295U #define __UINT_FAST32_TYPE__ unsigned int #define __UINT_FAST64_FMTX__ "llX" #define __UINT_FAST64_FMTo__ "llo" #define __UINT_FAST64_FMTu__ "llu" #define __UINT_FAST64_FMTx__ "llx" #define __UINT_FAST64_MAX__ 18446744073709551615ULL #define __UINT_FAST64_TYPE__ long long unsigned int #define __UINT_FAST8_FMTX__ "hhX" #define __UINT_FAST8_FMTo__ "hho" #define __UINT_FAST8_FMTu__ "hhu" #define __UINT_FAST8_FMTx__ "hhx" #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_LEAST16_FMTX__ "hX" #define __UINT_LEAST16_FMTo__ "ho" #define __UINT_LEAST16_FMTu__ "hu" #define __UINT_LEAST16_FMTx__ "hx" #define __UINT_LEAST16_MAX__ 65535 #define __UINT_LEAST16_TYPE__ unsigned short #define __UINT_LEAST32_FMTX__ "X" #define __UINT_LEAST32_FMTo__ "o" #define __UINT_LEAST32_FMTu__ "u" #define __UINT_LEAST32_FMTx__ "x" #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_FMTX__ "llX" #define __UINT_LEAST64_FMTo__ "llo" #define __UINT_LEAST64_FMTu__ "llu" #define __UINT_LEAST64_FMTx__ "llx" #define __UINT_LEAST64_MAX__ 18446744073709551615ULL #define __UINT_LEAST64_TYPE__ long long unsigned int #define __UINT_LEAST8_FMTX__ "hhX" #define __UINT_LEAST8_FMTo__ "hho" #define __UINT_LEAST8_FMTu__ "hhu" #define __UINT_LEAST8_FMTx__ "hhx" #define __UINT_LEAST8_MAX__ 255 #define __UINT_LEAST8_TYPE__ unsigned char #define __USER_LABEL_PREFIX__ _ #define __VERSION__ "Clang 11.1.0" #define __WCHAR_MAX__ 2147483647 #define __WCHAR_TYPE__ int #define __WCHAR_WIDTH__ 32 #define __WINT_MAX__ 2147483647 #define __WINT_TYPE__ int #define __WINT_WIDTH__ 32 #define __amd64 1 #define __amd64__ 1 #define __block __attribute__((__blocks__(byref))) #define __clang__ 1 #define __clang_major__ 11 #define __clang_minor__ 1 #define __clang_patchlevel__ 0 #define __clang_version__ "11.1.0 " #define __code_model_small__ 1 #define __core2 1 #define __core2__ 1 #define __cplusplus 201402L #define __cpp_aggregate_nsdmi 201304L #define __cpp_alias_templates 200704L #define __cpp_attributes 200809L #define __cpp_binary_literals 201304L #define __cpp_constexpr 201304L #define __cpp_constexpr_in_decltype 201711L #define __cpp_decltype 200707L #define __cpp_decltype_auto 201304L #define __cpp_delegating_constructors 200604L #define __cpp_digit_separators 201309L #define __cpp_exceptions 199711L #define __cpp_generic_lambdas 201304L #define __cpp_impl_destroying_delete 201806L #define __cpp_inheriting_constructors 201511L #define __cpp_init_captures 201304L #define __cpp_initializer_lists 200806L #define __cpp_lambdas 200907L #define __cpp_nsdmi 200809L #define __cpp_range_based_for 200907 #define __cpp_raw_strings 200710L #define __cpp_ref_qualifiers 200710L #define __cpp_return_type_deduction 201304L #define __cpp_rtti 199711L #define __cpp_rvalue_references 200610L #define __cpp_static_assert 200410 #define __cpp_threadsafe_static_init 200806L #define __cpp_unicode_characters 200704L #define __cpp_unicode_literals 200710L #define __cpp_user_defined_literals 200809L #define __cpp_variable_templates 201304L #define __cpp_variadic_templates 200704L #define __llvm__ 1 #define __nonnull _Nonnull #define __null_unspecified _Null_unspecified #define __nullable _Nullable #define __pic__ 2 #define __private_extern__ extern #define __seg_fs __attribute__((address_space(257))) #define __seg_gs __attribute__((address_space(256))) #define __strong #define __tune_core2__ 1 #define __unsafe_unretained #define __weak __attribute__((objc_gc(weak))) #define __x86_64 1 #define __x86_64__ 1 child config.compilerFlags 1.861901 Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang-11 [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt OpenCL only. Specify that single precision floating-point divide and sqrt used in the program source are correctly rounded. ============================================================================================= TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1425) Check for -std=c99 or equivalent flag Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 Accepted C99 compile flag: ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:158) Check for the C/CXX restrict keyword Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -V ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.c:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:413) Activate format string checking if using the GNU compilers ============================================================================================= TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:128) Check for C inline keyword ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ============================================================================================= TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:424) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ============================================================================================= TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:222) Determines the libraries needed to link with C compiled code ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1376) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -MMD -MP /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -MMD -MP Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -MMD -MP /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -MMD -MP Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang-11 [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt OpenCL only. Specify that single precision floating-point divide and sqrt used in the program source are correctly rounded. ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:158) Check for the C/CXX restrict keyword Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -V ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.cc:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:471) Determine the CXX dialect supported by the compiler(language) [and correspoding compiler option - if any]. isGNU indicates if the compiler is g++. -with--dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 for Cxx with flag: Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4) + (int)std::real(I); ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 ============================================================================================= TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:443) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c:5:22: warning: private field 'i' is not used [-Wunused-private-field] class somename { int i; };; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c:5:22: warning: private field 'i' is not used [-Wunused-private-field] class somename { int i; };; ^ 1 warning generated. ============================================================================================= TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:143) Check for C++ inline keyword ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ============================================================================================= TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:562) Determines the libraries needed to link with C++ from C and Fortran ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "std::__1::locale::use_facet(std::__1::locale::id&) const", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::ios_base::getloc() const", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::basic_string, std::__1::allocator >::__init(unsigned long, char)", referenced from: std::__1::basic_string, std::__1::allocator >::basic_string(unsigned long, char) in confc.o "std::__1::basic_string, std::__1::allocator >::~basic_string()", referenced from: std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o "std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::basic_ostream >::sentry::~sentry()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::cout", referenced from: asub() in confc.o "std::__1::ctype::id", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::locale::~locale()", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::ios_base::__set_badbit_and_consider_rethrow()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::clear(unsigned int)", referenced from: std::__1::ios_base::setstate(unsigned int) in confc.o "std::terminate()", referenced from: ___clang_call_terminate in confc.o "typeinfo for int", referenced from: asub() in confc.o GCC_except_table0 in confc.o "operator delete(void*)", referenced from: std::__1::_DeallocateCaller::__do_call(void*) in confc.o "___cxa_allocate_exception", referenced from: asub() in confc.o "___cxa_begin_catch", referenced from: asub() in confc.o ___clang_call_terminate in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_end_catch", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_throw", referenced from: asub() in confc.o "___gxx_personality_v0", referenced from: asub() in confc.o std::__1::__vector_base >::__vector_base() in confc.o std::__1::__vector_base >::__destruct_at_end(int*) in confc.o std::__1::allocator::deallocate(int*, unsigned long) in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o std::__1::ostreambuf_iterator >::ostreambuf_iterator(std::__1::basic_ostream >&) in confc.o ... ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc --help | head -n 500 Detected CLANG compiler ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers/confc.o -lc++ -ldl compilers: C++ requires -lc++ to link with C compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -V ============================================================================================= TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1502) child config.compilers 3.920427 ============================================================================================= TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure/conftest.c:6:7: warning: unused variable 'closure' [-Wunused-variable] int (^closure)(int);; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure/conftest.o -lc++ -ldl Defined "HAVE_CLOSURE" to "1" child config.utilities.closure 0.227020 child config.compilersFortran 0.000039 ============================================================================================= TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c ======== Checking running linked program ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.o -lc++ -ldl Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest ============================================================================================= TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c ============================================================================================= TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ============================================================================================= TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:8:8: warning: if statement has empty body [-Wempty-body] if (pi); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:8:8: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found#include ^~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found#include ^~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found#include ^~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found#include ^~~~~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MACHINE_ENDIAN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found#include ^~~~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found#include ^~~~~~~~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found#include ^~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found#include ^~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found#include ^~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found#include ^~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found#include ^~~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found#include ^~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found#include ^~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found#include ^~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found#include ^~~~~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MACHINE_ENDIAN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found#include ^~~~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found#include ^~~~~~~~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found#include ^~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found#include ^~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found#include ^~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found#include ^~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found#include ^~~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 4.903025 ============================================================================================= TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails/conftest.c:4:60: error: use of undeclared identifier '_SC_LEVEL1_DCACHE_LINESIZE'; did you mean 'getconf_LEVEL1_DCACHE_LINESIZE'? long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } ^~~~~~~~~~~~~~~~~~~~~~~~~~ getconf_LEVEL1_DCACHE_LINESIZE /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails/conftest.c:4:6: note: 'getconf_LEVEL1_DCACHE_LINESIZE' declared here long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } ======== Checking running linked program ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails/conftest.o -lc++ -ldl Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "32" child config.utilities.cacheDetails 0.657592 ============================================================================================= TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:42) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:11:18: warning: unused variable 'a' [-Wunused-variable] struct sigaction a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ============================================================================================= TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:48) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:11:1: error: unknown type name '__int64'; did you mean '__int64_t'? __int64 a;; ^~~~~~~ __int64_t /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/i386/_types.h:46:33: note: '__int64_t' declared here typedef long long __int64_t; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ============================================================================================= TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:54) Checks for types associated with sizes, such as size_t. Checking for type: size_t ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] size_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ============================================================================================= TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:64) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] mode_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] off_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ============================================================================================= TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:59) Checks for types associated with integers, such as int32_t. Checking for type: int32_t ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:11:9: warning: unused variable 'a' [-Wunused-variable] int32_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ============================================================================================= TESTING: checkPID from config.types(config/BuildSystem/config/types.py:70) Checks for pid_t, and defines it if necessary Checking for type: pid_t ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] pid_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ============================================================================================= TESTING: checkUID from config.types(config/BuildSystem/config/types.py:74) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c ============================================================================================= TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:81) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -lc++ -ldl Defined "HAVE_C99_COMPLEX" to "1" ============================================================================================= TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:92) Check for complex numbers in namespace std ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.cc:6:22: warning: unused variable 'x' [-Wunused-variable] std::complex x; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -lc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ============================================================================================= TESTING: checkConst from config.types(config/BuildSystem/config/types.py:103) Checks for working const, and if not found defines it to empty string ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:24:16: warning: if statement has empty body [-Wempty-body] if (zero.x); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:24:16: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:25:14: warning: if statement has empty body [-Wempty-body] if (x[0]); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:25:14: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:31:14: warning: if statement has empty body [-Wempty-body] if (*s); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:31:14: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:52:15: warning: if statement has empty body [-Wempty-body] if (foo); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:52:15: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:46:20: warning: variable 'b' is uninitialized when used here [-Wuninitialized] struct s *b; b->j = 5; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:46:18: note: initialize the variable 'b' to silence this warning struct s *b; b->j = 5; ^ = 0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:30:8: warning: variable 't' is uninitialized when used here [-Wuninitialized] *t++ = 0; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c:27:14: note: initialize the variable 't' to silence this warning char *t; ^ = 0 6 warnings generated. Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" Defined "USING_64BIT_PTR" to "1" ============================================================================================= TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:193) ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" ============================================================================================= TESTING: checkMaxPathLen from config.types(config/BuildSystem/config/types.py:215) Determining PETSC_MAX_PATH_LEN ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types/conftest.c Defined "MAX_PATH_LEN" to "1024" child config.types 3.040188 ============================================================================================= TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.000969 ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lfpe -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lfpe clang-11: error: linker command failed with exit code 1 (use -v to see invocation) ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lsocket -lnsl -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lsocket clang-11: error: linker command failed with exit code 1 (use -v to see invocation) ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lfpe -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lfpe clang-11: error: linker command failed with exit code 1 (use -v to see invocation) ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lsocket -lnsl -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lsocket clang-11: error: linker command failed with exit code 1 (use -v to see invocation) ============================================================================================= TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl CheckMath: using math library [] ============================================================================================= TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl erf() found Defined "HAVE_ERF" to "1" ============================================================================================= TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl tgamma() found Defined "HAVE_TGAMMA" to "1" ============================================================================================= TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl lgamma() found Defined "HAVE_LGAMMA" to "1" ============================================================================================= TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl Defined "HAVE_FENV_H" to "1" ============================================================================================= TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c:5:81: warning: unused variable 'y' [-Wunused-variable] static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl log2() found Defined "HAVE_LOG2" to "1" ============================================================================================= TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl realtime functions are linked in by default ============================================================================================= TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -ldl -lc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 2.656736 ============================================================================================= TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: __check_bgl_perfctr_void in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [ADIOI_BGL_Open] in library [''] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: __check_ADIOI_BGL_Open in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ============================================================================================= TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:95) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 0.445541 child config.atomics 0.000011 ============================================================================================= TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) ============================================================================================= TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl ============================================================================================= TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl ============================================================================================= TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ============================================================================================= TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ============================================================================================= TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Defined "HAVE_MEMMOVE" to "1" ============================================================================================= TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Defined "SIGNAL_CAST" to " " ============================================================================================= TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c:6:25: error: assigning to 'int' from incompatible type 'void' int ierr; void *p; ierr = free(p); return 0; ^ ~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Defined "HAVE_VA_COPY" to "1" ============================================================================================= TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _access snprintf realpath dlsym bzero _getcwd _pipe getwd uname _lseek sleep _sleep lseek usleep dlclose gethostname clock access _snprintf dlerror fork getpagesize sbreak memalign getcwd gethostbyname readlink _set_output_format PXFGETARG strcasecmp dlopen fpresetsticky drand48 socket popen getrusage _mkdir time fpsetsticky stricmp] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c:16:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c:16:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c:19:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c:19:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c:44:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c:44:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _access(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char _pipe(); char getwd(); char uname(); char _lseek(); char sleep(); char _sleep(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char access(); char _snprintf(); char dlerror(); char fork(); char getpagesize(); char sbreak(); char memalign(); char getcwd(); char gethostbyname(); char readlink(); char _set_output_format(); char PXFGETARG(); char strcasecmp(); char dlopen(); char fpresetsticky(); char drand48(); char socket(); char popen(); char getrusage(); char _mkdir(); char time(); char fpsetsticky(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o "__access", referenced from: _main in conftest.o "__getcwd", referenced from: _main in conftest.o "__lseek", referenced from: _main in conftest.o "__mkdir", referenced from: _main in conftest.o "__pipe", referenced from: _main in conftest.o "__set_output_format", referenced from: _main in conftest.o "__sleep", referenced from: _main in conftest.o "__snprintf", referenced from: _main in conftest.o "_fpresetsticky", referenced from: _main in conftest.o "_fpsetsticky", referenced from: _main in conftest.o "_memalign", referenced from: _main in conftest.o "_sbreak", referenced from: _main in conftest.o "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [rand getdomainname realpath dlsym bzero getwd uname usleep dlclose gethostname clock] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c:17:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c:17:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char getwd(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_GETWD" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Checking for functions [dlerror fork getpagesize gethostbyname readlink strcasecmp dlopen drand48 socket popen getrusage time] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c:18:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c:18:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlerror(); char fork(); char getpagesize(); char gethostbyname(); char readlink(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char popen(); char getrusage(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Defined "HAVE_DLERROR" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_access] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [snprintf] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c:13:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c:13:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [_pipe] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__pipe", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [_lseek] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [sleep] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_sleep] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [lseek] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [sbreak] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [memalign] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [getcwd] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__set_output_format", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [PXFGETARG] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [fpresetsticky] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpresetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_fpresetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [_mkdir] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__mkdir", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [fpsetsticky] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpsetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_fpsetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [stricmp] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) ============================================================================================= TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions/conftest.o -lc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 7.161990 ============================================================================================= TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize/conftest.c:38:18: warning: implicit declaration of function 'getpagesize' is invalid in C99 [-Wimplicit-function-declaration] f2 = getpagesize() * ((double)(temp2.ru_maxrss-temp1.ru_maxrss))/(4.0*ARRAYSIZE); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize/conftest.c:58:2: error: expected '}' } ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize/conftest.c:12:12: note: to match this '{' int main() { ^ 1 warning and 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include #include #include #include int main() { #define ARRAYSIZE 10000000 int i,*m; struct rusage temp1,temp2; double f0,f1,f2; if (getrusage(RUSAGE_SELF,&temp1)) { printf("Error calling getrusage()\n"); return -1; } m = malloc(ARRAYSIZE*sizeof(int)); if (!m) { printf("Error calling malloc()\n"); return -3; } for (i=0; i .90 && f0 < 1.1) { printf("uses bytes in getrusage()\n"); return 1; if (f1 > .90 && f1 < 1.1) { printf("uses 1024 size chunks in getrusage()\n"); return 2; } else if (f2 > .9 && f2 < 1.1) { printf("uses getpagesize() chunks in getrusage()\n"); return 3; } printf("unable to determine if uses bytes, 1024 or getpagesize() chunks in getrusage()\n"); return -2;; return 0; } Compile failed inside link output from getrusage() child config.utilities.getResidentSetSize 0.111799 child config.utilities.fortranCommandLine 0.000014 ============================================================================================= TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros/conftest.c:4:10: fatal error: 'sysctl.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros/conftest.c:7:1: error: use of undeclared identifier 'cpu_set_t' cpu_set_t mset; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros/conftest.c:8:1: warning: implicit declaration of function 'CPU_ZERO' is invalid in C99 [-Wimplicit-function-declaration] CPU_ZERO(&mset);; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros/conftest.c:8:11: error: use of undeclared identifier 'mset' CPU_ZERO(&mset);; ^ 1 warning and 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } child config.utilities.featureTestMacros 0.401107 ============================================================================================= TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:6:9: warning: unused variable 'foo' [-Wunused-variable] u_short foo; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ============================================================================================= TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ============================================================================================= TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ============================================================================================= TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c:21:7: warning: incompatible function pointer types initializing 'int (*)(char *, size_t)' (aka 'int (*)(char *, unsigned long)') with an expression of type 'int (char *, int)' [-Wincompatible-function-pointer-types] int (*getdomainname_ptr)(char*,size_t) = getdomainname; ^ ~~~~~~~~~~~~~ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.cc:21:7: error: cannot initialize a variable of type 'int (*)(char *, size_t)' (aka 'int (*)(char *, unsigned long)') with an lvalue of type 'int (char *, int)': type mismatch at 2nd parameter ('size_t' (aka 'unsigned long') vs 'int') int (*getdomainname_ptr)(char*,size_t) = getdomainname; ^ ~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Compile failed inside link ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,int) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -lc++ -ldl ============================================================================================= TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing/conftest.o -lc++ -ldl child config.utilities.missing 3.177722 ============================================================================================= TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found#include ^~~~~~~~~~1 error generated.: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found#include ^~~~~~~~~1 error generated.: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found#include ^~~~~~~~~~~~~~~~~1 error generated.: child config.utilities.FPTrap 0.151285 ============================================================================================= TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnormal(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes/conftest.o -lc++ -ldl Defined "HAVE_ISNORMAL" to "1" ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes/conftest.o -lc++ -ldl Defined "HAVE_ISNAN" to "1" ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes/conftest.o -lc++ -ldl Defined "HAVE_ISINF" to "1" ============================================================================================= TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c:4:10: fatal error: 'quadmath.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 0.821090 ============================================================================================= TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /Users/markadams/opt/miniconda2/bin/mkdir...not found Checking for program /Users/markadams/opt/miniconda2/condabin/mkdir...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/mkdir...not found Checking for program /usr/local/opt/llvm/bin/mkdir...not found Checking for program /opt/anaconda2/bin/mkdir...not found Checking for program /usr/local/opt/texinfo/bin/mkdir...not found Checking for program /Users/markadams/homebrew/bin/mkdir...not found Checking for program /Users/markadams/homebrew/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /bin/mkdir...found Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ============================================================================================= TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /Users/markadams/opt/miniconda2/bin/autoreconf...not found Checking for program /Users/markadams/opt/miniconda2/condabin/autoreconf...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/autoreconf...not found Checking for program /usr/local/opt/llvm/bin/autoreconf...not found Checking for program /opt/anaconda2/bin/autoreconf...not found Checking for program /usr/local/opt/texinfo/bin/autoreconf...not found Checking for program /Users/markadams/homebrew/bin/autoreconf...not found Checking for program /Users/markadams/homebrew/bin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...found Executing: ['/usr/local/bin/autoreconf'] autoreconf test successful! Checking for program /Users/markadams/opt/miniconda2/bin/libtoolize...not found Checking for program /Users/markadams/opt/miniconda2/condabin/libtoolize...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/libtoolize...not found Checking for program /usr/local/opt/llvm/bin/libtoolize...not found Checking for program /opt/anaconda2/bin/libtoolize...not found Checking for program /usr/local/opt/texinfo/bin/libtoolize...not found Checking for program /Users/markadams/homebrew/bin/libtoolize...not found Checking for program /Users/markadams/homebrew/bin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...found ============================================================================================= TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /Users/markadams/opt/miniconda2/bin/sh...not found Checking for program /Users/markadams/opt/miniconda2/condabin/sh...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/sh...not found Checking for program /usr/local/opt/llvm/bin/sh...not found Checking for program /opt/anaconda2/bin/sh...not found Checking for program /usr/local/opt/texinfo/bin/sh...not found Checking for program /Users/markadams/homebrew/bin/sh...not found Checking for program /Users/markadams/homebrew/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /Users/markadams/opt/miniconda2/bin/sed...not found Checking for program /Users/markadams/opt/miniconda2/condabin/sed...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/sed...not found Checking for program /usr/local/opt/llvm/bin/sed...not found Checking for program /opt/anaconda2/bin/sed...not found Checking for program /usr/local/opt/texinfo/bin/sed...not found Checking for program /Users/markadams/homebrew/bin/sed...not found Checking for program /Users/markadams/homebrew/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Executing: /usr/bin/sed -i s/sed/sd/g "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.programs/sed1" Rejected SEDINPLACE cmd: /usr/bin/sed -i Executing: /usr/bin/sed -i "" s/sed/sd/g "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i "" Defined make macro "SEDINPLACE" to "/usr/bin/sed -i """ Checking for program /Users/markadams/opt/miniconda2/bin/mv...not found Checking for program /Users/markadams/opt/miniconda2/condabin/mv...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/mv...not found Checking for program /usr/local/opt/llvm/bin/mv...not found Checking for program /opt/anaconda2/bin/mv...not found Checking for program /usr/local/opt/texinfo/bin/mv...not found Checking for program /Users/markadams/homebrew/bin/mv...not found Checking for program /Users/markadams/homebrew/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /Users/markadams/opt/miniconda2/bin/cp...not found Checking for program /Users/markadams/opt/miniconda2/condabin/cp...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/cp...not found Checking for program /usr/local/opt/llvm/bin/cp...not found Checking for program /opt/anaconda2/bin/cp...not found Checking for program /usr/local/opt/texinfo/bin/cp...not found Checking for program /Users/markadams/homebrew/bin/cp...not found Checking for program /Users/markadams/homebrew/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /Users/markadams/opt/miniconda2/bin/grep...not found Checking for program /Users/markadams/opt/miniconda2/condabin/grep...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/grep...not found Checking for program /usr/local/opt/llvm/bin/grep...not found Checking for program /opt/anaconda2/bin/grep...not found Checking for program /usr/local/opt/texinfo/bin/grep...not found Checking for program /Users/markadams/homebrew/bin/grep...not found Checking for program /Users/markadams/homebrew/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /Users/markadams/opt/miniconda2/bin/rm...not found Checking for program /Users/markadams/opt/miniconda2/condabin/rm...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/rm...not found Checking for program /usr/local/opt/llvm/bin/rm...not found Checking for program /opt/anaconda2/bin/rm...not found Checking for program /usr/local/opt/texinfo/bin/rm...not found Checking for program /Users/markadams/homebrew/bin/rm...not found Checking for program /Users/markadams/homebrew/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /Users/markadams/opt/miniconda2/bin/diff...not found Checking for program /Users/markadams/opt/miniconda2/condabin/diff...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/diff...not found Checking for program /usr/local/opt/llvm/bin/diff...not found Checking for program /opt/anaconda2/bin/diff...not found Checking for program /usr/local/opt/texinfo/bin/diff...not found Checking for program /Users/markadams/homebrew/bin/diff...not found Checking for program /Users/markadams/homebrew/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.programs/diff1" "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of the specific search path Warning accessing /usr/ucb gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Warning accessing /usr/usb gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Defined make macro "PYTHON" to "/Users/markadams/opt/miniconda2/bin/python" Checking for program /Users/markadams/opt/miniconda2/bin/m4...not found Checking for program /Users/markadams/opt/miniconda2/condabin/m4...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/m4...not found Checking for program /usr/local/opt/llvm/bin/m4...not found Checking for program /opt/anaconda2/bin/m4...not found Checking for program /usr/local/opt/texinfo/bin/m4...not found Checking for program /Users/markadams/homebrew/bin/m4...not found Checking for program /Users/markadams/homebrew/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 1.888554 ============================================================================================= TESTING: consistencyChecks from config.packages.make(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.make(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default ============================================================================================= TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:96) Check Guesses for GNU make Executing: gmake --version GNUMake check failed: Could not execute "['gmake --version']": /bin/sh: gmake: command not found Executing: make --version stdout: GNU Make 3.81 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program built for i386-apple-darwin11.3.0 Checking for program /Users/markadams/opt/miniconda2/bin/make...not found Checking for program /Users/markadams/opt/miniconda2/condabin/make...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/make...not found Checking for program /usr/local/opt/llvm/bin/make...not found Checking for program /opt/anaconda2/bin/make...not found Checking for program /usr/local/opt/texinfo/bin/make...not found Checking for program /Users/markadams/homebrew/bin/make...not found Checking for program /Users/markadams/homebrew/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" Checking for program /Users/markadams/opt/miniconda2/bin/make...not found Checking for program /Users/markadams/opt/miniconda2/condabin/make...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/make...not found Checking for program /usr/local/opt/llvm/bin/make...not found Checking for program /opt/anaconda2/bin/make...not found Checking for program /usr/local/opt/texinfo/bin/make...not found Checking for program /Users/markadams/homebrew/bin/make...not found Checking for program /Users/markadams/homebrew/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE_USER" to "make" ============================================================================================= ***** WARNING: You have a version of GNU make older than 4.0. It will work, but may not support all the parallel testing options. You can install the latest GNU make with your package manager, such as brew or macports, or use the --download-make option to get the latest GNU make ***** ============================================================================================= ============================================================================================= TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:150) Setup other GNU make stuff Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/make --print-directory" Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ============================================================================================= TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:197) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 8 cores: using make_np = 7 Defined make macro "MAKE_NP" to "7" Defined make macro "MAKE_TEST_NP" to "4" Defined make macro "MAKE_LOAD" to "12.0" Defined make macro "NPMAX" to "8" child config.packages.make 0.038893 ============================================================================================= TESTING: consistencyChecks from config.packages.X(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.X(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.X 0.000844 ============================================================================================= TESTING: consistencyChecks from config.packages.hwloc(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.hwloc 0.000963 ============================================================================================= TESTING: consistencyChecks from config.packages.valgrind(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search VALGRIND: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['valgrind/valgrind.h'] in Compiler specific search VALGRIND: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found#include ^~~~~~~~~~~~~~~~~~~~~1 error generated.: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/include'] Found header files [] in ['/usr/local/include'] Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/usr/local/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['valgrind/valgrind.h'] in ['/usr/local/include'] ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { RUNNING_ON_VALGRIND; ; return 0; } Defined "HAVE_VALGRIND" to "1" Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Defined "HAVE_VALGRIND_DARWIN" to "1" Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -lc++ -ldl Valid C linker flag -Wl,-bind_at_load Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "valgrind/config.h" ;petscpkgver(VERSION); Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/usr/local/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind/conftest.c For valgrind need <= 3.11.0.SVN <= For valgrind unable to convert version string to tuple, skipping version check child config.packages.valgrind 0.570297 ============================================================================================= TESTING: consistencyChecks from config.packages.thrust(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.thrust 0.001663 ============================================================================================= TESTING: consistencyChecks from config.packages.cuda(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.cuda 0.000909 ============================================================================================= TESTING: consistencyChecks from config.packages.OpenMPI(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.001034 Executing: uname -s stdout: Darwin ============================================================================================= TESTING: consistencyChecks from config.packages.MPICH(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.010150 ============================================================================================= TESTING: consistencyChecks from config.packages.MPI(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:690) ================================================================================== Checking for a functional MPI Checking for library in User specified root directory MPI: [] Contents: ['INSTALL_RECEIPT.json', 'bin', '.brew', 'CHANGES', 'include', 'README', 'lib', 'COPYRIGHT', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl Checking for optional headers [] in User specified root directory MPI: ['/usr/local/Cellar/mpich/3.4.1_1/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/Cellar/mpich/3.4.1_1/include'] Found header files [] in ['/usr/local/Cellar/mpich/3.4.1_1/include'] Checking for headers ['mpi.h'] in User specified root directory MPI: ['/usr/local/Cellar/mpich/3.4.1_1/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/usr/local/Cellar/mpich/3.4.1_1/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/Cellar/mpich/3.4.1_1/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['mpi.h'] in ['/usr/local/Cellar/mpich/3.4.1_1/include'] Defined "HAVE_MPI_F90MODULE_VISIBILITY" to "1" ============================================================================================= TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:543) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:4:25: error: use of undeclared identifier 'I_MPI_VERSION' const char *mpich_ver = I_MPI_VERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'I_MPI_NUMVERSION' int mpich_ver = I_MPI_NUMVERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'MVAPICH2_NUMVERSION' int mpich_ver = MVAPICH2_NUMVERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Defined "HAVE_MPICH_NUMVERSION" to "30401300" Executing: uname -s stdout: Darwin ============================================================================================= TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:332) Check for functions added to the interface in MPI-2 ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:35: warning: if statement has empty body [-Wempty-body] int flag;if (MPI_Finalized(&flag)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:35: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:71: warning: if statement has empty body [-Wempty-body] if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:71: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:7:121: warning: if statement has empty body [-Wempty-body] if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:7:121: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -lc++ -ldl ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:131: warning: if statement has empty body [-Wempty-body] MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:131: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -lc++ -ldl ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:63: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:63: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -lc++ -ldl ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:49: warning: if statement has empty body [-Wempty-body] if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:49: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:102: warning: if statement has empty body [-Wempty-body] char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:102: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:94: warning: if statement has empty body [-Wempty-body] int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:94: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:90: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:90: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:85: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ^~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ^ = 0 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_ONE_SIDED" to "1" ============================================================================================= TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:379) Check for functions added to the interface in MPI-3 ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:7:112: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:7:112: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:8:111: warning: if statement has empty body [-Wempty-body] if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:8:111: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:9:82: warning: if statement has empty body [-Wempty-body] if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:9:82: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:7:96: warning: if statement has empty body [-Wempty-body] if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:7:96: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:8:110: warning: if statement has empty body [-Wempty-body] if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:8:110: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:9:96: warning: if statement has empty body [-Wempty-body] if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:9:96: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:10:109: warning: if statement has empty body [-Wempty-body] if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:10:109: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:11:97: warning: if statement has empty body [-Wempty-body] if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:11:97: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:12:110: warning: if statement has empty body [-Wempty-body] if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:12:110: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:13:96: warning: if statement has empty body [-Wempty-body] if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:13:96: note: put the semicolon on a separate line to silence this warning 7 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:8:145: warning: if statement has empty body [-Wempty-body] if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:8:145: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:9:89: warning: if statement has empty body [-Wempty-body] if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:9:89: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:10:95: warning: if statement has empty body [-Wempty-body] if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:10:95: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:104: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:104: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:99: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ = 0 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:94: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:94: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:84: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ = 0 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_RGET" to "1" ============================================================================================= TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:177) Checking for location of mpiexec Checking for program /usr/local/Cellar/mpich/3.4.1_1/bin/mpiexec...found Checking for program /usr/local/Cellar/mpich/3.4.1_1/bin/mpiexec...found Defined make macro "MPIEXECEXECUTABLE" to "/usr/local/Cellar/mpich/3.4.1_1/bin/mpiexec" Running Executable with threads to time it out at 120 Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpiexec -n 1 printenv stdout: GIT_PS1_SHOWDIRTYSTATE=1 PIP_DOWNLOAD_CACHE=/Users/markadams/.pip/cache TERM_PROGRAM=iTerm.app SHELL=/bin/bash TERM=xterm-256color CH_TIMER=FALSE TMPDIR=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/ PETSC_ARCH=arch-macosx-gnu-kokkos-g CONDA_SHLVL=1 TERM_PROGRAM_VERSION=3.3.9 CONDA_PROMPT_MODIFIER=(base) TERM_SESSION_ID=w4t0p0:78B505B8-8C6D-4A4F-9366-F591E5F7239D USER=markadams SVN_EDITOR=vi COMMAND_MODE=unix2003 CH_TIMER_SAMPLE=60000 XP_LICENSE_INTERFACE=en0 CONDA_EXE=/Users/markadams/opt/miniconda2/bin/conda SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.YJkVqQXUiu/Listeners __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0 COLUMNS=294 _CE_CONDA= PATH=/Users/markadams/opt/miniconda2/bin:/Users/markadams/opt/miniconda2/condabin:/Library/Frameworks/Python.framework/Versions/3.9/bin:/usr/local/opt/llvm/bin:/opt/anaconda2/bin:/usr/local/opt/texinfo/bin:/Users/markadams/homebrew/bin:/Users/markadams/homebrew/bin:/usr/local/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin:/Library/Apple/usr/bin:/usr/local/bin:. _=/usr/local/Cellar/mpich/3.4.1_1/bin/mpiexec LaunchInstanceID=963BC69C-4E00-434E-94C7-242D3444A94A DATAFILESPATH=/Users/markadams/matrices XGC_PLATFORM=osx CONDA_PREFIX=/Users/markadams/opt/miniconda2 PWD=/Users/markadams/Codes/petsc DBUS_LAUNCHD_SESSION_BUS_SOCKET=/private/tmp/com.apple.launchd.xHFTlFDG7F/unix_domain_listener LANG=en_US.UTF-8 ITERM_PROFILE=Default XPC_FLAGS=0x0 MACHINE=darwin LINES=110 XPC_SERVICE_NAME=0 _CE_M= COLORFGBG=0;15 HOME=/Users/markadams SHLVL=2 CH_OUTPUT_INTERVAL=1000 NETCDF_DIR=/Users/markadams/SFE/NETCDF_INSTALL LC_TERMINAL_VERSION=3.3.9 SLEPC_DIR=/Users/markadams/Codes/slepc ITERM_SESSION_ID=w4t0p0:78B505B8-8C6D-4A4F-9366-F591E5F7239D LOGNAME=markadams CONDA_PYTHON_EXE=/Users/markadams/opt/miniconda2/bin/python CVS_RSH=ssh GIT_PS1_SHOWUPSTREAM=auto CONDA_DEFAULT_ENV=base ARCHFLAGS=-arch x86_64 DISPLAY=/private/tmp/com.apple.launchd.yYXuhXympA/org.xquartz:0 LC_TERMINAL=iTerm2 H5PART_DIR=/Users/markadams/Codes/H5Part-1.6.6/build SECURITYSESSIONID=186a9 PETSC_DIR=/Users/markadams/Codes/petsc COLORTERM=truecolor HYDI_CONTROL_FD=10 GFORTRAN_UNBUFFERED_PRECONNECTED=y MPIR_CVAR_CH3_INTERFACE_HOSTNAME=MarksMac-302.local MPI_LOCALNRANKS=1 MPI_LOCALRANKID=0 PMI_RANK=0 PMI_FD=4 PMI_SIZE=1 Defined "HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE" to "MPIR_CVAR_CH3" Defined make macro "MPIEXEC" to "/usr/local/Cellar/mpich/3.4.1_1/bin/mpiexec" Checking for program /usr/libexec/ApplicationFirewall/socketfilterfw...found Defined make macro "SOCKETFILTERFW" to "/usr/libexec/ApplicationFirewall/socketfilterfw" Running Executable with threads to time it out at 60 Executing: /usr/libexec/ApplicationFirewall/socketfilterfw --getglobalstate stdout: Firewall is enabled. (State = 1) Checking for program /Users/markadams/opt/miniconda2/bin/hostname...not found Checking for program /Users/markadams/opt/miniconda2/condabin/hostname...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/hostname...not found Checking for program /usr/local/opt/llvm/bin/hostname...not found Checking for program /opt/anaconda2/bin/hostname...not found Checking for program /usr/local/opt/texinfo/bin/hostname...not found Checking for program /Users/markadams/homebrew/bin/hostname...not found Checking for program /Users/markadams/homebrew/bin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/bin/hostname...not found Checking for program /bin/hostname...found Defined make macro "HOSTNAME" to "hostname" ======== Checking running linked program ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -lc++ -ldl Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest to see if it can be run Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpiexec -n 1 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest Running Executable with threads to time it out at 120 Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpiexec -n 1 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest ============================================================================================= TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:426) Checking for MPI Datatype handles ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_LONG_DOUBLE" to "1" ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_INT64_T" to "1" ============================================================================================= TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:472) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_MPI_SGI_barrier", referenced from: __check_MPI_SGI_barrier in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) SGI MPI test failure ============================================================================================= TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:482) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl ============================================================================================= TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:498) Make sure fortran include [mpif.h] and library symbols are found ============================================================================================= TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:519) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:7:48: warning: if statement has empty body [-Wempty-body] if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:7:48: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:12:54: warning: if statement has empty body [-Wempty-body] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:12:54: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:14:102: warning: if statement has empty body [-Wempty-body] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:14:102: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:18:61: warning: if statement has empty body [-Wempty-body] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:18:61: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:20:101: warning: if statement has empty body [-Wempty-body] if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:20:101: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:22:74: warning: if statement has empty body [-Wempty-body] if (MPI_File_close(&fh)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:22:74: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:18:55: warning: variable 'info' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:17:14: note: initialize the variable 'info' to silence this warning MPI_Info info; ^ = 0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:12:24: warning: variable 'fh' is uninitialized when used here [-Wuninitialized] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:9:61: note: initialize the variable 'fh' to silence this warning MPI_File fh; ^ = 0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:18:27: warning: variable 'disp' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:16:65: note: initialize the variable 'disp' to silence this warning MPI_Offset disp; ^ = 0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:14:76: warning: variable 'buf' is uninitialized when used here [-Wuninitialized] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:10:10: note: initialize the variable 'buf' to silence this warning void *buf; ^ = 0 10 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPIIO" to "1" ============================================================================================= TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:623) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS ============================================================================================= TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:665) Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_MPIX_Iallreduce", referenced from: __check_MPIX_Iallreduce in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [MPIX_Ibarrier] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Ibarrier(); static void _check_MPIX_Ibarrier() { MPIX_Ibarrier(); } int main() { _check_MPIX_Ibarrier();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_MPIX_Ibarrier", referenced from: __check_MPIX_Ibarrier in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_DUP;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_CONTIGUOUS;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_NAMED;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ============================================================================================= TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" ;petscpkgver(MPI_VERSION); Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.MPI 7.397068 ============================================================================================= TESTING: consistencyChecks from config.packages.zstd(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.zstd 0.001279 ============================================================================================= TESTING: consistencyChecks from config.packages.yaml(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.001005 ============================================================================================= TESTING: consistencyChecks from config.packages.sycl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sycl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.sycl 0.000839 ============================================================================================= TESTING: consistencyChecks from config.packages.ssl(config/BuildSystem/config/packages/ssl.py:31) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.000951 ============================================================================================= TESTING: consistencyChecks from config.packages.sprng(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.000885 Not a clone of PETSc or no Fortran compiler or fortran-bindings disabled, don't need Sowing child config.packages.sowing 0.000179 ============================================================================================= TESTING: consistencyChecks from config.packages.revolve(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.000890 ============================================================================================= TESTING: consistencyChecks from config.packages.radau5(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.000901 ============================================================================================= TESTING: consistencyChecks from config.packages.pami(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.001056 ============================================================================================= TESTING: consistencyChecks from config.packages.opengles(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.000832 ============================================================================================= TESTING: consistencyChecks from config.packages.opencl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.000832 ============================================================================================= TESTING: consistencyChecks from config.packages.muparser(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.000872 ============================================================================================= TESTING: consistencyChecks from config.packages.mpe(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.000913 ============================================================================================= TESTING: consistencyChecks from config.packages.memkind(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.000957 ============================================================================================= TESTING: consistencyChecks from config.packages.libmesh(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:76) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.001323 ============================================================================================= TESTING: consistencyChecks from config.packages.moose(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.001113 ============================================================================================= TESTING: consistencyChecks from config.packages.libjpeg(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.000954 Checking for program /Users/markadams/opt/miniconda2/bin/lgrind...not found Checking for program /Users/markadams/opt/miniconda2/condabin/lgrind...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/lgrind...not found Checking for program /usr/local/opt/llvm/bin/lgrind...not found Checking for program /opt/anaconda2/bin/lgrind...not found Checking for program /usr/local/opt/texinfo/bin/lgrind...not found Checking for program /Users/markadams/homebrew/bin/lgrind...not found Checking for program /Users/markadams/homebrew/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /bin/lgrind...not found Checking for program /usr/sbin/lgrind...not found Checking for program /sbin/lgrind...not found Checking for program /Library/TeX/texbin/lgrind...not found Checking for program /opt/X11/bin/lgrind...not found Checking for program /Library/Apple/usr/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program ./lgrind...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/lgrind...not found child config.packages.lgrind 0.000977 ============================================================================================= TESTING: consistencyChecks from config.packages.hip(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hip(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.hip 0.000906 Looking for default Gmsh executable Checking for program /Users/markadams/opt/miniconda2/bin/gmsh...not found Checking for program /Users/markadams/opt/miniconda2/condabin/gmsh...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/gmsh...not found Checking for program /usr/local/opt/llvm/bin/gmsh...not found Checking for program /opt/anaconda2/bin/gmsh...not found Checking for program /usr/local/opt/texinfo/bin/gmsh...not found Checking for program /Users/markadams/homebrew/bin/gmsh...not found Checking for program /Users/markadams/homebrew/bin/gmsh...not found Checking for program /usr/local/bin/gmsh...not found Checking for program /usr/local/bin/gmsh...not found Checking for program /usr/bin/gmsh...not found Checking for program /bin/gmsh...not found Checking for program /usr/sbin/gmsh...not found Checking for program /sbin/gmsh...not found Checking for program /Library/TeX/texbin/gmsh...not found Checking for program /opt/X11/bin/gmsh...not found Checking for program /Library/Apple/usr/bin/gmsh...not found Checking for program /usr/local/bin/gmsh...not found Checking for program ./gmsh...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/gmsh...not found child config.packages.gmsh 0.000709 ============================================================================================= TESTING: consistencyChecks from config.packages.gmp(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.000882 ============================================================================================= TESTING: consistencyChecks from config.packages.mpfr(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.000876 ============================================================================================= TESTING: consistencyChecks from config.packages.giflib(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.000871 ============================================================================================= TESTING: consistencyChecks from config.packages.cub(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cub(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.cub 0.000869 ============================================================================================= TESTING: consistencyChecks from config.packages.ctetgen(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ctetgen 0.000876 ============================================================================================= TESTING: consistencyChecks from config.packages.concurrencykit(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.000905 ============================================================================================= TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:30) Looking for default C2html executable Checking for program /Users/markadams/opt/miniconda2/bin/c2html...not found Checking for program /Users/markadams/opt/miniconda2/condabin/c2html...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/c2html...not found Checking for program /usr/local/opt/llvm/bin/c2html...not found Checking for program /opt/anaconda2/bin/c2html...not found Checking for program /usr/local/opt/texinfo/bin/c2html...not found Checking for program /Users/markadams/homebrew/bin/c2html...not found Checking for program /Users/markadams/homebrew/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /sbin/c2html...not found Checking for program /Library/TeX/texbin/c2html...not found Checking for program /opt/X11/bin/c2html...not found Checking for program /Library/Apple/usr/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program ./c2html...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/c2html...not found child config.packages.c2html 0.001158 ============================================================================================= TESTING: consistencyChecks from config.packages.boost(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.001184 ============================================================================================= TESTING: consistencyChecks from config.packages.silo(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.000902 ============================================================================================= TESTING: consistencyChecks from config.packages.Random123(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.000886 ============================================================================================= TESTING: consistencyChecks from config.packages.PARTY(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.000886 ============================================================================================= TESTING: consistencyChecks from config.packages.NVSHMEM(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.NVSHMEM(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.NVSHMEM 0.000802 ============================================================================================= TESTING: consistencyChecks from config.packages.Matlab(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.000759 ============================================================================================= TESTING: consistencyChecks from config.packages.MatlabEngine(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.000798 ============================================================================================= TESTING: consistencyChecks from config.packages.Mathematica(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.000814 ============================================================================================= TESTING: consistencyChecks from config.packages.regex(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl Checking for optional headers [] in Compiler specific search REGEX: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['regex.h'] in Compiler specific search REGEX: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['regex.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.regex 0.306518 ============================================================================================= TESTING: consistencyChecks from config.packages.libceed(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.001275 Defined "PYTHON_EXE" to ""/Users/markadams/opt/miniconda2/bin/python"" Executing: /Users/markadams/opt/miniconda2/bin/python -c "import Cython" Executing: /Users/markadams/opt/miniconda2/bin/python -c "import numpy" child config.packages.python 0.320632 ============================================================================================= TESTING: consistencyChecks from config.packages.petsc4py(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:118) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] Defined make rule "petsc4pytest" with dependencies "" and code [] child config.packages.petsc4py 0.001985 ============================================================================================= TESTING: consistencyChecks from config.packages.mpi4py(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:74) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] child config.packages.mpi4py 0.001546 ============================================================================================= TESTING: consistencyChecks from config.packages.slepc(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.slepc(config/BuildSystem/config/packages/slepc.py:97) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc 0.001483 ============================================================================================= TESTING: consistencyChecks from config.packages.opengl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.000899 ============================================================================================= TESTING: consistencyChecks from config.packages.glut(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.000878 ============================================================================================= TESTING: consistencyChecks from config.packages.GLVis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.GLVis(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.GLVis 0.000947 ============================================================================================= TESTING: consistencyChecks from config.packages.CoDiPack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.000899 ============================================================================================= TESTING: consistencyChecks from config.packages.adblaslapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.000891 child config.packages.cxxlibs 0.000020 ============================================================================================= TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:48) Looking for default CMake executable Checking for program /Users/markadams/opt/miniconda2/bin/cmake...not found Checking for program /Users/markadams/opt/miniconda2/condabin/cmake...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/cmake...not found Checking for program /usr/local/opt/llvm/bin/cmake...not found Checking for program /opt/anaconda2/bin/cmake...not found Checking for program /usr/local/opt/texinfo/bin/cmake...not found Checking for program /Users/markadams/homebrew/bin/cmake...not found Checking for program /Users/markadams/homebrew/bin/cmake...not found Checking for program /usr/local/bin/cmake...found Defined make macro "CMAKE" to "/usr/local/bin/cmake" Looking for default CTest executable Checking for program /Users/markadams/opt/miniconda2/bin/ctest...not found Checking for program /Users/markadams/opt/miniconda2/condabin/ctest...not found Checking for program /Library/Frameworks/Python.framework/Versions/3.9/bin/ctest...not found Checking for program /usr/local/opt/llvm/bin/ctest...not found Checking for program /opt/anaconda2/bin/ctest...not found Checking for program /usr/local/opt/texinfo/bin/ctest...not found Checking for program /Users/markadams/homebrew/bin/ctest...not found Checking for program /Users/markadams/homebrew/bin/ctest...not found Checking for program /usr/local/bin/ctest...found Defined make macro "CTEST" to "/usr/local/bin/ctest" Executing: /usr/local/bin/cmake --version stdout: cmake version 3.19.7 CMake suite maintained and supported by Kitware (kitware.com/cmake). cmake version found 3.19.7 child config.packages.cmake 0.016473 ============================================================================================= TESTING: consistencyChecks from config.packages.unittestcpp(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp 0.001418 ============================================================================================= TESTING: consistencyChecks from config.packages.googletest(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.000979 ============================================================================================= TESTING: consistencyChecks from config.packages.eigen(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.eigen 0.001006 ============================================================================================= TESTING: consistencyChecks from config.packages.szlib(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.szlib(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.szlib 0.000899 ============================================================================================= TESTING: consistencyChecks from config.packages.zlib(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.zlib(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.zlib(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional zlib Checking for library in Compiler specific search ZLIB: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [compress uncompress] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char compress(); static void _check_compress() { compress(); } char uncompress(); static void _check_uncompress() { uncompress(); } int main() { _check_compress(); _check_uncompress();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_compress", referenced from: __check_compress in conftest.o "_uncompress", referenced from: __check_uncompress in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for library in Compiler specific search ZLIB: ['libz.a'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [compress uncompress] in library ['libz.a'] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char compress(); static void _check_compress() { compress(); } char uncompress(); static void _check_uncompress() { uncompress(); } int main() { _check_compress(); _check_uncompress();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lz -lc++ -ldl Defined "HAVE_LIBZ" to "1" Checking for optional headers [] in Compiler specific search ZLIB: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['zlib.h'] in Compiler specific search ZLIB: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['zlib.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['zlib.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.zlib(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "zlib.h" ;petscpkgver(ZLIB_VERSION); Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.zlib /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.zlib/conftest.c For zlib need <= 1.2.11 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.zlib(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.zlib 0.749982 child config.packages.mathlib 0.000022 ============================================================================================= TESTING: consistencyChecks from config.packages.tetgen(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.tetgen 0.001337 ============================================================================================= TESTING: consistencyChecks from config.packages.tchem(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.tchem 0.000910 ============================================================================================= TESTING: consistencyChecks from config.packages.saws(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.saws 0.000897 ============================================================================================= TESTING: consistencyChecks from config.packages.libpng(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.libpng 0.000944 ============================================================================================= TESTING: consistencyChecks from config.packages.combblas(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.combblas(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.combblas 0.000903 ============================================================================================= TESTING: consistencyChecks from config.packages.Triangle(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.Triangle(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.Triangle(config/BuildSystem/config/packages/Triangle.py:127) ================================================================================== Checking for a functional Triangle Looking for TRIANGLE at git.triangle, hg.triangle or a directory starting with ['petsc-pkg-triangle', 'Triangle'] Found a copy of TRIANGLE in git.triangle Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v1.3-p2^{commit}'] Executing: ['git', 'rev-parse', 'v1.3-p2'] stdout: 83097fb451da7944460445a6f55008c3de0fae8b Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing libtriangle.a Removing make.inc Removing pkg.gitcommit Removing src/triangle.o Executing: ['git', 'checkout', '-f', '83097fb451da7944460445a6f55008c3de0fae8b'] Detected Darwin/MacOSX Catalina OS Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc --help | head -n 500 Detected CLANG compiler Executing: uname -s stdout: Darwin Makefile /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/petsc/conf/pkg.conf.triangle has correct checksum Commit file /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/petsc/conf/pkg.gitcommit.triangle has correct checksum Do not need to rebuild TRIANGLE Checking for library in Download TRIANGLE: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/libtriangle.a'] Contents: ['bin', 'include', 'lib', 'externalpackages', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [triangulate] in library ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/libtriangle.a'] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char triangulate(); static void _check_triangulate() { triangulate(); } int main() { _check_triangulate();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib -ltriangle -lc++ -ldl Defined "HAVE_LIBTRIANGLE" to "1" Checking for optional headers [] in Download TRIANGLE: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Found header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Checking for headers ['triangle.h'] in Download TRIANGLE: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['triangle.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Checking include with compiler flags var CPPFLAGS ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.zlib -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['triangle.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] ============================================================================================= TESTING: checkVersion from config.packages.Triangle(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.Triangle 0.435477 ============================================================================================= TESTING: consistencyChecks from config.packages.metis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.metis(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.metis(config/BuildSystem/config/packages/metis.py:46) ================================================================================== Checking for a functional metis Looking for METIS at git.metis, hg.metis or a directory starting with ['petsc-pkg-metis'] Found a copy of METIS in git.metis Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v5.1.0-p10^{commit}'] Executing: ['git', 'rev-parse', 'v5.1.0-p10'] stdout: c8d2dc1e751ef7ebe5e221156d7572d7cea26990 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing metis.petscconf Removing petsc-build/ Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', 'c8d2dc1e751ef7ebe5e221156d7572d7cea26990'] Detected Darwin/MacOSX Catalina OS Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc --help | head -n 500 Detected CLANG compiler Makefile /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/petsc/conf/pkg.conf.metis has correct checksum Commit file /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/petsc/conf/pkg.gitcommit.metis has correct checksum Do not need to rebuild METIS Checking for library in Download METIS: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/libmetis.a'] Contents: ['bin', 'include', 'lib', 'externalpackages', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [METIS_PartGraphKway] in library ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/libmetis.a'] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char METIS_PartGraphKway(); static void _check_METIS_PartGraphKway() { METIS_PartGraphKway(); } int main() { _check_METIS_PartGraphKway();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib -lmetis -lc++ -ldl Defined "HAVE_LIBMETIS" to "1" Checking for optional headers [] in Download METIS: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Found header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Checking for headers ['metis.h'] in Download METIS: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['metis.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Checking include with compiler flags var CPPFLAGS ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.zlib -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['metis.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis/conftest.c:8:7: warning: extra tokens at end of #endif directive [-Wextra-tokens] #endif; ^ // 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include "metis.h" int main() { #if (IDXTYPEWIDTH != 32) #error incompatible IDXTYPEWIDTH #endif; return 0; } ============================================================================================= TESTING: checkVersion from config.packages.metis(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "metis.h" ;petscpkgver(METIS_VER_MAJOR.METIS_VER_MINOR.METIS_VER_SUBMINOR); Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.zlib -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis/conftest.c For metis need <= 5.1.0 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.metis(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.metis 0.781718 ============================================================================================= TESTING: consistencyChecks from config.packages.pragmatic(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pragmatic 0.001447 ============================================================================================= TESTING: consistencyChecks from config.packages.parmetis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.parmetis(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.parmetis(config/BuildSystem/config/packages/parmetis.py:41) ================================================================================== Checking for a functional parmetis Looking for PARMETIS at git.parmetis, hg.parmetis or a directory starting with ['petsc-pkg-parmetis'] Found a copy of PARMETIS in git.parmetis Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v4.0.3-p6^{commit}'] Executing: ['git', 'rev-parse', 'v4.0.3-p6'] stdout: 475d8facbb324527c205f1f78a7c90bd160bddcd Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing parmetis.petscconf Removing petsc-build/ Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '475d8facbb324527c205f1f78a7c90bd160bddcd'] Detected Darwin/MacOSX Catalina OS Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc --help | head -n 500 Detected CLANG compiler Makefile /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/petsc/conf/pkg.conf.parmetis has correct checksum Commit file /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/petsc/conf/pkg.gitcommit.parmetis has correct checksum Do not need to rebuild PARMETIS Checking for library in Download PARMETIS: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/libparmetis.a'] Contents: ['bin', 'include', 'lib', 'externalpackages', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [ParMETIS_V3_PartKway] in library ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/libparmetis.a'] ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/libmetis.a'] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ParMETIS_V3_PartKway(); static void _check_ParMETIS_V3_PartKway() { ParMETIS_V3_PartKway(); } int main() { _check_ParMETIS_V3_PartKway();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib -lparmetis -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib -lmetis -lc++ -ldl Defined "HAVE_LIBPARMETIS" to "1" Checking for optional headers [] in Download PARMETIS: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Found header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Checking for headers ['parmetis.h'] in Download PARMETIS: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['parmetis.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Checking include with compiler flags var CPPFLAGS ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include', '/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include', '/usr/local/Cellar/mpich/3.4.1_1/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.zlib -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['parmetis.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Checking for functions [ParMETIS_ComputeVertexSeparator] in library ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/libparmetis.a'] ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/libmetis.a'] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ParMETIS_ComputeVertexSeparator(); static void _check_ParMETIS_ComputeVertexSeparator() { ParMETIS_ComputeVertexSeparator(); } int main() { _check_ParMETIS_ComputeVertexSeparator();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib -lparmetis -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib -lmetis -lc++ -ldl Defined "HAVE_LIBPARMETIS" to "1" ============================================================================================= TESTING: checkVersion from config.packages.parmetis(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "parmetis.h" ;petscpkgver(PARMETIS_MAJOR_VERSION.PARMETIS_MINOR_VERSION.PARMETIS_SUBMINOR_VERSION); Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.zlib -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.parmetis -I/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.parmetis/conftest.c For parmetis need <= 4.0.3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.parmetis 0.844538 ============================================================================================= TESTING: consistencyChecks from config.packages.Chaco(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Chaco 0.001270 Executing: uname -s stdout: Darwin ============================================================================================= TESTING: consistencyChecks from config.packages.hdf5(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.hdf5(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.hdf5(config/BuildSystem/config/packages/hdf5.py:83) ================================================================================== Checking for a functional hdf5 Looking for HDF5 at git.hdf5, hg.hdf5 or a directory starting with ['hdf5'] Found a copy of HDF5 in hdf5-1.12.0 Detected Darwin/MacOSX Catalina OS Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc --help | head -n 500 Detected CLANG compiler Makefile /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/petsc/conf/pkg.conf.hdf5 has correct checksum Do not need to rebuild HDF5 Checking for library in Download HDF5: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/libhdf5_hl.a', 'libhdf5.a'] Contents: ['bin', 'include', 'lib', 'externalpackages', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [H5T_init] in library ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/libhdf5_hl.a', 'libhdf5.a'] ['libz.a'] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char H5T_init(); static void _check_H5T_init() { H5T_init(); } int main() { _check_H5T_init();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib -lhdf5_hl -lhdf5 -lz -lc++ -ldl Defined "HAVE_LIBHDF5_HL" to "1" Defined "HAVE_LIBHDF5" to "1" Checking for optional headers [] in Download HDF5: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Found header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Checking for headers ['hdf5.h'] in Download HDF5: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['hdf5.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Checking include with compiler flags var CPPFLAGS ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include', '/usr/local/Cellar/mpich/3.4.1_1/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.zlib -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.parmetis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include -I/usr/local/Cellar/mpich/3.4.1_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['hdf5.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "H5pubconf.h" #if defined(H5_HAVE_ZLIB_H) foundbeast #endif Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.zlib -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.parmetis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.hdf5 -I/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.hdf5/conftest.c Defined "HDF5_HAVE_ZLIB" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "H5pubconf.h" #if defined(H5_HAVE_SZLIB_H) foundbeast #endif Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.zlib -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.parmetis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.hdf5 -I/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.hdf5/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "H5pubconf.h" #if defined(H5_HAVE_PARALLEL) foundbeast #endif Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.zlib -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.parmetis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.hdf5 -I/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.hdf5/conftest.c Defined "HDF5_HAVE_PARALLEL" to "1" ============================================================================================= TESTING: checkVersion from config.packages.hdf5(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "hdf5.h" ;petscpkgver(H5_VERSION); Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.zlib -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.parmetis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.hdf5 -I/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.hdf5/conftest.c For hdf5 need 1.8 <= 1.12.0 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.hdf5 0.750127 ============================================================================================= TESTING: consistencyChecks from config.packages.med(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.med(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.med 0.001371 ============================================================================================= TESTING: consistencyChecks from config.packages.cgns(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.cgns 0.000845 ============================================================================================= TESTING: consistencyChecks from config.packages.ascem-io(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ascem-io 0.000897 ============================================================================================= TESTING: consistencyChecks from config.packages.pflotran(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pflotran 0.000887 ============================================================================================= TESTING: consistencyChecks from config.packages.alquimia(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.alquimia 0.000889 ============================================================================================= TESTING: consistencyChecks from config.packages.SAMRAI(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SAMRAI(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.SAMRAI 0.000896 ============================================================================================= TESTING: consistencyChecks from config.packages.ADIOS2(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADIOS2(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS2 0.000894 child config.packages.flibs 0.000016 ============================================================================================= TESTING: consistencyChecks from config.packages.pnetcdf(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pnetcdf 0.000981 ============================================================================================= TESTING: consistencyChecks from config.packages.netcdf(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.netcdf 0.000924 ============================================================================================= TESTING: consistencyChecks from config.packages.exodusii(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.exodusii 0.000914 ============================================================================================= TESTING: consistencyChecks from config.packages.fblaslapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.fblaslapack(config/BuildSystem/config/packages/fblaslapack.py:27) The Apple Accelerate library uses threads that valgrind cannot handle Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS ============================================================================================= WARNING: If you plan to use valgrind you must use --download-fblaslapack or --download-f2cblaslapack ============================================================================================= child config.packages.fblaslapack 0.009059 ============================================================================================= TESTING: consistencyChecks from config.packages.pthread(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.pthread(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:20) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl Checking for optional headers [] in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['pthread.h'] in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.zlib -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.parmetis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.hdf5 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['pthread.h'] in [] ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread/conftest.c:6:1: error: use of undeclared identifier 'pthread_barrier_t' pthread_barrier_t *a; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread/conftest.c:6:20: error: use of undeclared identifier 'a' pthread_barrier_t *a; ^ 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread/conftest.c:6:1: error: use of undeclared identifier 'cpu_set_t' cpu_set_t *a; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread/conftest.c:6:12: error: use of undeclared identifier 'a' cpu_set_t *a; ^ 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.zlib -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.parmetis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.hdf5 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSCTL_H" to "1" ============================================================================================= TESTING: checkVersion from config.packages.pthread(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.pthread 0.648465 ============================================================================================= TESTING: consistencyChecks from config.packages.egads(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.egads(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.egads 0.001338 ============================================================================================= TESTING: consistencyChecks from config.packages.PTScotch(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.PTScotch 0.000978 ============================================================================================= TESTING: consistencyChecks from config.packages.mmg(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mmg(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mmg 0.000969 ============================================================================================= TESTING: consistencyChecks from config.packages.parmmg(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.parmmg(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.parmmg 0.000940 ============================================================================================= TESTING: consistencyChecks from config.packages.Zoltan(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Zoltan(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Zoltan 0.000893 ============================================================================================= TESTING: consistencyChecks from config.packages.ADIOS(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADIOS(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS 0.000893 ============================================================================================= TESTING: consistencyChecks from config.packages.openmp(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openmp(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.openmp 0.000815 ============================================================================================= TESTING: consistencyChecks from config.packages.viennacl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.viennacl(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.viennacl(config/BuildSystem/config/packages/viennacl.py:46) ================================================================================== Checking for a functional viennacl Looking for VIENNACL at git.viennacl, hg.viennacl or a directory starting with ['viennacl'] Found a copy of VIENNACL in git.viennacl Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'dc552a8^{commit}'] Executing: ['git', 'rev-parse', 'dc552a8'] stdout: dc552a8d4bba2bb028a346dc611deea0c67e3eed Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', 'dc552a8d4bba2bb028a346dc611deea0c67e3eed'] ViennaCLDir = /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/externalpackages/git.viennacl installDir /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g Not checking for library in Download VIENNACL: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Download VIENNACL: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Found header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Checking for headers ['viennacl/forwards.h'] in Download VIENNACL: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['viennacl/forwards.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Checking include with compiler flags var CXXPPFLAGS ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['viennacl/forwards.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/include'] Defined "HAVE_VIENNACL_NO_CUDA" to "1" ============================================================================================= TESTING: checkVersion from config.packages.viennacl(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.viennacl 0.374540 ============================================================================================= TESTING: consistencyChecks from config.packages.ColPack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ColPack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ColPack 0.002734 ============================================================================================= TESTING: consistencyChecks from config.packages.ADOLC(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.001966 ============================================================================================= TESTING: consistencyChecks from config.packages.openblas(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openblas(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.openblas 0.001611 ============================================================================================= TESTING: consistencyChecks from config.packages.blis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.blis(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.blis 0.001505 ============================================================================================= TESTING: consistencyChecks from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.f2cblaslapack 0.001993 ============================================================================================= TESTING: consistencyChecks from config.packages.BlasLapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.BlasLapack(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:454) ================================================================================ Checking for BLAS and LAPACK in Default compiler libraries ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:109) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling unchanged on BLAS/LAPACK Checking for functions [ddot] in library [''] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ddot", referenced from: __check_ddot in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library [''] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ddot_", referenced from: __check_ddot_ in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for BLAS and LAPACK in Default BLIS ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:109) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling unchanged on BLAS/LAPACK Checking for functions [ddot] in library ['libblis.a'] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lblis -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lblis clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['libblis.a'] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lblis -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lblis clang-11: error: linker command failed with exit code 1 (use -v to see invocation) Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for BLAS and LAPACK in Default compiler locations ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:109) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling unchanged on BLAS/LAPACK Checking for functions [ddot] in library ['libblas.a'] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -lblas -lc++ -ldl Defined "HAVE_LIBBLAS" to "1" Checking for functions [dgetrs] in library ['liblapack.a'] ['libblas.a'] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs(); static void _check_dgetrs() { dgetrs(); } int main() { _check_dgetrs();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -llapack -lblas -lc++ -ldl Defined "HAVE_LIBLAPACK" to "1" Checking for functions [dgeev] in library ['liblapack.a'] ['libblas.a'] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev(); static void _check_dgeev() { dgeev(); } int main() { _check_dgeev();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -llapack -lblas -lc++ -ldl Defined "HAVE_LIBLAPACK" to "1" Found Fortran mangling on BLAS/LAPACK which is unchanged ============================================================================================= TESTING: checkMKL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:551) Check for Intel MKL library Checking for functions [mkl_set_num_threads] in library ['liblapack.a', 'libblas.a'] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -llapack -lblas -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_mkl_set_num_threads", referenced from: __check_mkl_set_num_threads in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) ============================================================================================= TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:589) Check for the IBM ESSL library Checking for functions [iessl] in library ['liblapack.a', 'libblas.a'] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -llapack -lblas -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_iessl", referenced from: __check_iessl in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) ============================================================================================= TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:597) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions [ipessl] in library ['liblapack.a', 'libblas.a'] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -llapack -lblas -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ipessl", referenced from: __check_ipessl in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) ============================================================================================= TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:622) Check for missing LAPACK routines Checking for functions [dgelss dgerfs dgges dhgeqz dhseqr dorgqr dormqr dstebz dstegr dstein dsteqr dsytri dtgsen dtrsen dtrtrs] in library ['liblapack.a'] ['libblas.a', 'liblapack.a', 'libblas.a'] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgelss(); static void _check_dgelss() { dgelss(); } char dgerfs(); static void _check_dgerfs() { dgerfs(); } char dgges(); static void _check_dgges() { dgges(); } char dhgeqz(); static void _check_dhgeqz() { dhgeqz(); } char dhseqr(); static void _check_dhseqr() { dhseqr(); } char dorgqr(); static void _check_dorgqr() { dorgqr(); } char dormqr(); static void _check_dormqr() { dormqr(); } char dstebz(); static void _check_dstebz() { dstebz(); } char dstegr(); static void _check_dstegr() { dstegr(); } char dstein(); static void _check_dstein() { dstein(); } char dsteqr(); static void _check_dsteqr() { dsteqr(); } char dsytri(); static void _check_dsytri() { dsytri(); } char dtgsen(); static void _check_dtgsen() { dtgsen(); } char dtrsen(); static void _check_dtrsen() { dtrsen(); } char dtrtrs(); static void _check_dtrtrs() { dtrtrs(); } int main() { _check_dgelss(); _check_dgerfs(); _check_dgges(); _check_dhgeqz(); _check_dhseqr(); _check_dorgqr(); _check_dormqr(); _check_dstebz(); _check_dstegr(); _check_dstein(); _check_dsteqr(); _check_dsytri(); _check_dtgsen(); _check_dtrsen(); _check_dtrtrs();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -llapack -lblas -llapack -lblas -lc++ -ldl Defined "HAVE_LIBLAPACK" to "1" ============================================================================================= TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:638) Do the BLAS/LAPACK libraries have a valid lsame() function with correct binding. Defined "MISSING_LAPACK_lsame" to "1" Checking for functions [lsame] in library ['liblapack.a', 'libblas.a'] [] ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame(); static void _check_lsame() { lsame(); } int main() { _check_lsame();; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries/conftest.o -llapack -lblas -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_lsame", referenced from: __check_lsame in conftest.o ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) ===== Checking compiler Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev(void); char* testroutine(void){return dgeev(); }===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev(void); char* testroutine(void){return dgeev(); }Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers/conftest.o -llapack -lblas -llapack -lblas -lc++ -ldl ============================================================================================= TESTING: checkRuntimeIssues from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:697) Determines if BLAS/LAPACK routines use 32 or 64 bit integers ======== Checking running linked program ===== Checking linker Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.BlasLapack/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilerFlags -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.BlasLapack -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { FILE *output = fopen("runtimetestoutput","w"); extern double ddot(const int*,const double*,const int *,const double*,const int*); double x1mkl[4] = {3.0,5.0,7.0,9.0}; int one1mkl = 1,nmkl = 2; double dotresultmkl = 0; dotresultmkl = ddot(&nmkl,x1mkl,&one1mkl,x1mkl,&one1mkl); fprintf(output, "-known-64-bit-blas-indices=%d",dotresultmkl != 34);; return 0; } Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.BlasLapack/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.BlasLapack/conftest.o -llapack -lblas -lc++ -ldl Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.BlasLapack/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.BlasLapack/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.BlasLapack/conftest Checking for 64 bit blas indices: result 0 ============================================================================================= TESTING: checkCHeaders from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:529) Check for cblas.h and lapacke.h ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['cblas.h', 'lapacke.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.zlib -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.parmetis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.pthread -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.packages.hdf5 -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'cblas.h' file not found #include ^~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'cblas.h' file not found #include ^~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/config.headers/conftest.c:3:10: fatal error: 'cblas.h' file not found#include ^~~~~~~~~1 error generated.: ============================================================================================= TESTING: checkVersion from config.packages.BlasLapack(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.BlasLapack(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.BlasLapack 4.087142 ============================================================================================= TESTING: consistencyChecks from config.packages.sundials2(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sundials2(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.sundials2 0.000959 ============================================================================================= TESTING: consistencyChecks from config.packages.spai(config/BuildSystem/config/packages/spai.py:53) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.spai(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.spai 0.001032 ============================================================================================= TESTING: consistencyChecks from config.packages.pARMS(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pARMS(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pARMS 0.000895 ============================================================================================= TESTING: consistencyChecks from config.packages.p4est(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.p4est(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional p4est Looking for P4EST at git.p4est, hg.p4est or a directory starting with ['p4est'] Found a copy of P4EST in git.p4est Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', '1727693b446ee0c987be701320db0cd5de617cfc^{commit}'] Executing: ['git', 'rev-parse', '1727693b446ee0c987be701320db0cd5de617cfc'] stdout: 1727693b446ee0c987be701320db0cd5de617cfc Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing Makefile.in Removing aclocal.m4 Removing autom4te.cache/ Removing build-aux/ar-lib Removing build-aux/compile Removing build-aux/config.guess Removing build-aux/config.sub Removing build-aux/depcomp Removing build-aux/install-sh Removing build-aux/ltmain.sh Removing build-aux/missing Removing build-aux/test-driver Removing config.log Removing config/libtool.m4 Removing config/ltoptions.m4 Removing config/ltsugar.m4 Removing config/ltversion.m4 Removing config/lt~obsolete.m4 Removing configure Removing p4est.petscconf Removing pkg.gitcommit Removing src/pre_config.h.in Executing: ['git', 'checkout', '-f', '1727693b446ee0c987be701320db0cd5de617cfc'] Looking for P4EST at git.p4est, hg.p4est or a directory starting with ['p4est'] Found a copy of P4EST in git.p4est Executing: ['git', 'submodule', 'update', '--init'] Detected Darwin/MacOSX Catalina OS Executing: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc --help | head -n 500 Detected CLANG compiler Have to rebuild P4EST, /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/externalpackages/git.p4est/p4est.petscconf != /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib/petsc/conf/pkg.conf.p4est ============================================================================================= Trying to bootstrap p4est using autotools; this may take several minutes ============================================================================================= Executing: ./bootstrap stdout: Running bootstrap in subdirectory sc --- This is the bootstrap script for libsc --- It is NOT required to run bootstrap to build from a tar.gz archive Development requires a libtool recent enough to contain LT_INIT (2.2 works) Current directory is /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/externalpackages/git.p4est/sc --- This is the bootstrap script for p4est --- Current directory is /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/externalpackages/git.p4est libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `build-aux'. libtoolize: copying file `build-aux/config.guess' libtoolize: copying file `build-aux/config.sub' libtoolize: copying file `build-aux/install-sh' libtoolize: copying file `build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `config'. libtoolize: copying file `config/libtool.m4' libtoolize: copying file `config/ltoptions.m4' libtoolize: copying file `config/ltsugar.m4' libtoolize: copying file `config/ltversion.m4' libtoolize: copying file `config/lt~obsolete.m4' ============================================================================================= Running configure on P4EST; this may take several minutes ============================================================================================= Executing: ./configure --prefix=/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g MAKE=/usr/bin/make --libdir=/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib CC="/usr/local/Cellar/mpich/3.4.1_1/bin/mpicc" CFLAGS="-fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration" AR="/usr/bin/ar" ARFLAGS="cr" CXX="/usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx" CXXFLAGS="-fstack-protector -fno-stack-check -g -O0" --disable-fortran --disable-fc --disable-f77 --disable-f90 --enable-shared --enable-mpi CPPFLAGS="-I/usr/local/Cellar/mpich/3.4.1_1/include" LIBS="-lz -llapack -lblas" --enable-memalign=16 stdout: checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... build-aux/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for a sed that does not truncate output... /usr/bin/sed checking Major version... 2 checking Minor version... 0 checking Point version... 7-1727 o--------------------------------------- | Checking options o--------------------------------------- o--------------------------------------- | Checking MPI and related programs o--------------------------------------- checking whether we are using MPI... yes checking whether we are using MPI I/O... yes checking whether we are using MPI_Init_thread... yes checking for mpiexec... mpiexec configure: F77 set to mpif77 configure: FC set to mpif90 configure: CC set to /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc configure: CXX set to /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx checking whether the Fortran 77 compiler works... yes checking for Fortran 77 compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU Fortran 77 compiler... yes checking whether mpif77 accepts -g... yes checking build system type... x86_64-apple-darwin19.6.0 checking host system type... x86_64-apple-darwin19.6.0 checking how to get verbose linking output from mpif77... -v checking for Fortran 77 libraries of mpif77... -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. -lz -llapack -lblas -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm checking for style of include used by /usr/bin/make... GNU checking for gcc... /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc checking whether we are using the GNU C compiler... yes checking whether /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc accepts -g... yes checking for /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc option to accept ISO C89... none needed checking whether /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc understands -c and -o together... yes checking dependency style of /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc... gcc3 checking for dummy main to link with Fortran 77 libraries... unknown Error running configure on P4EST: Could not execute "['./configure --prefix=/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g MAKE=/usr/bin/make --libdir=/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib CC="/usr/local/Cellar/mpich/3.4.1_1/bin/mpicc" CFLAGS="-fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration" AR="/usr/bin/ar" ARFLAGS="cr" CXX="/usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx" CXXFLAGS="-fstack-protector -fno-stack-check -g -O0" --disable-fortran --disable-fc --disable-f77 --disable-f90 --enable-shared --enable-mpi CPPFLAGS="-I/usr/local/Cellar/mpich/3.4.1_1/include" LIBS="-lz -llapack -lblas" --enable-memalign=16']": checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... build-aux/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for a sed that does not truncate output... /usr/bin/sed checking Major version... 2 checking Minor version... 0 checking Point version... 7-1727 o--------------------------------------- | Checking options o--------------------------------------- o--------------------------------------- | Checking MPI and related programs o--------------------------------------- checking whether we are using MPI... yes checking whether we are using MPI I/O... yes checking whether we are using MPI_Init_thread... yes checking for mpiexec... mpiexec configure: F77 set to mpif77 configure: FC set to mpif90 configure: CC set to /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc configure: CXX set to /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx checking whether the Fortran 77 compiler works... yes checking for Fortran 77 compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU Fortran 77 compiler... yes checking whether mpif77 accepts -g... yes checking build system type... x86_64-apple-darwin19.6.0 checking host system type... x86_64-apple-darwin19.6.0 checking how to get verbose linking output from mpif77... -v checking for Fortran 77 libraries of mpif77... -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. -lz -llapack -lblas -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm checking for style of include used by /usr/bin/make... GNU checking for gcc... /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc checking whether we are using the GNU C compiler... yes checking whether /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc accepts -g... yes checking for /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc option to accept ISO C89... none needed checking whether /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc understands -c and -o together... yes checking dependency style of /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc... gcc3 checking for dummy main to link with Fortran 77 libraries... unknownconfigure: error: in `/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/externalpackages/git.p4est': configure: error: linking to Fortran libraries from C fails See `config.log' for more details Output in config.log for P4EST: This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by p4est configure 2.0.7-1727, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --prefix=/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g MAKE=/usr/bin/make --libdir=/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib CC=/usr/local/Cellar/mpich/3.4.1_1/bin/mpicc CFLAGS=-fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration AR=/usr/bin/ar ARFLAGS=cr CXX=/usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx CXXFLAGS=-fstack-protector -fno-stack-check -g -O0 --disable-fortran --disable-fc --disable-f77 --disable-f90 --enable-shared --enable-mpi CPPFLAGS=-I/usr/local/Cellar/mpich/3.4.1_1/include LIBS=-lz -llapack -lblas --enable-memalign=16 ## --------- ## ## Platform. ## ## --------- ## hostname = MarksMac-302.local uname -m = x86_64 uname -r = 19.6.0 uname -s = Darwin uname -v = Darwin Kernel Version 19.6.0: Tue Jan 12 22:13:05 PST 2021; root:xnu-6153.141.16~1/RELEASE_X86_64 /usr/bin/uname -p = i386 /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = Mach kernel version: Darwin Kernel Version 19.6.0: Tue Jan 12 22:13:05 PST 2021; root:xnu-6153.141.16~1/RELEASE_X86_64 Kernel configured for up to 8 processors. 4 processors are physically available. 8 processors are logically available. Processor type: x86_64h (Intel x86-64h Haswell) Processors active: 0 1 2 3 4 5 6 7 Primary memory available: 16.00 gigabytes Default processor set: 562 tasks, 3085 threads, 8 processors Load average: 2.40, Mach factor: 5.58 /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /Users/markadams/opt/miniconda2/bin PATH: /Users/markadams/opt/miniconda2/condabin PATH: /Library/Frameworks/Python.framework/Versions/3.9/bin PATH: /usr/local/opt/llvm/bin PATH: /opt/anaconda2/bin PATH: /usr/local/opt/texinfo/bin PATH: /Users/markadams/homebrew/bin PATH: /Users/markadams/homebrew/bin PATH: /usr/local/bin PATH: /usr/local/bin PATH: /usr/bin PATH: /bin PATH: /usr/sbin PATH: /sbin PATH: /Library/TeX/texbin PATH: /opt/X11/bin PATH: /Library/Apple/usr/bin PATH: /usr/local/bin PATH: . ## ----------- ## ## Core tests. ## ## ----------- ## configure:2994: checking for a BSD-compatible install configure:3062: result: /usr/bin/install -c configure:3073: checking whether build environment is sane configure:3128: result: yes configure:3279: checking for a thread-safe mkdir -p configure:3318: result: build-aux/install-sh -c -d configure:3325: checking for gawk configure:3355: result: no configure:3325: checking for mawk configure:3355: result: no configure:3325: checking for nawk configure:3355: result: no configure:3325: checking for awk configure:3341: found /usr/bin/awk configure:3352: result: awk configure:3363: checking whether /usr/bin/make sets $(MAKE) configure:3385: result: yes configure:3414: checking whether /usr/bin/make supports nested variables configure:3431: result: yes configure:3567: checking whether /usr/bin/make supports nested variables configure:3584: result: yes configure:3595: checking for a sed that does not truncate output configure:3659: result: /usr/bin/sed configure:3670: checking Major version configure:3672: result: 2 configure:3674: checking Minor version configure:3676: result: 0 configure:3678: checking Point version configure:3680: result: 7-1727 configure:3913: checking whether we are using MPI configure:3915: result: yes configure:3932: checking whether we are using MPI I/O configure:3934: result: yes configure:3951: checking whether we are using MPI_Init_thread configure:3953: result: yes configure:3963: checking for mpiexec configure:3979: found /usr/local/bin/mpiexec configure:3990: result: mpiexec configure:4027: F77 set to mpif77 configure:4034: FC set to mpif90 configure:4040: CC set to /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc configure:4046: CXX set to /usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx configure:4299: checking for Fortran 77 compiler version configure:4308: mpif77 --version >&5 GNU Fortran (Homebrew GCC 10.2.0_4) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4319: $? = 0 configure:4308: mpif77 -v >&5 Using built-in specs. COLLECT_GCC=/usr/local/bin/gfortran COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/10.2.0_4/libexec/gcc/x86_64-apple-darwin19/10.2.0/lto-wrapper Target: x86_64-apple-darwin19 Configured with: ../configure --build=x86_64-apple-darwin19 --prefix=/usr/local/Cellar/gcc/10.2.0_4 --libdir=/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10 --disable-nls --enable-checking=release --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-10 --with-gmp=/usr/local/opt/gmp --with-mpfr=/usr/local/opt/mpfr --with-mpc=/usr/local/opt/libmpc --with-isl=/usr/local/opt/isl --with-system-zlib --with-pkgversion='Homebrew GCC 10.2.0_4' --with-bugurl=https://github.com/Homebrew/homebrew-core/issues --disable-multilib --with-native-system-header-dir=/usr/include --with-sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk SED=/usr/bin/sed Thread model: posix Supported LTO compression algorithms: zlib gcc version 10.2.0 (Homebrew GCC 10.2.0_4) configure:4319: $? = 0 configure:4308: mpif77 -V >&5 gfortran: error: unrecognized command-line option '-V' gfortran: fatal error: no input files compilation terminated. configure:4319: $? = 1 configure:4308: mpif77 -qversion >&5 gfortran: error: unrecognized command-line option '-qversion'; did you mean '--version'? gfortran: fatal error: no input files compilation terminated. configure:4319: $? = 1 configure:4334: checking whether the Fortran 77 compiler works configure:4356: mpif77 conftest.f -lz -llapack -lblas >&5 configure:4360: $? = 0 configure:4408: result: yes configure:4411: checking for Fortran 77 compiler default output file name configure:4413: result: a.out configure:4419: checking for suffix of executables configure:4426: mpif77 -o conftest conftest.f -lz -llapack -lblas >&5 configure:4430: $? = 0 configure:4452: result: configure:4468: checking whether we are cross compiling configure:4476: mpif77 -o conftest conftest.f -lz -llapack -lblas >&5 configure:4480: $? = 0 configure:4487: ./conftest configure:4491: $? = 0 configure:4506: result: no configure:4511: checking for suffix of object files configure:4527: mpif77 -c conftest.f >&5 configure:4531: $? = 0 configure:4552: result: o configure:4560: checking whether we are using the GNU Fortran 77 compiler configure:4573: mpif77 -c conftest.F >&5 configure:4573: $? = 0 configure:4582: result: yes configure:4588: checking whether mpif77 accepts -g configure:4599: mpif77 -c -g conftest.f >&5 configure:4599: $? = 0 configure:4607: result: yes configure:4640: checking build system type configure:4654: result: x86_64-apple-darwin19.6.0 configure:4674: checking host system type configure:4687: result: x86_64-apple-darwin19.6.0 configure:4712: checking how to get verbose linking output from mpif77 configure:4722: mpif77 -c -g -O2 conftest.f >&5 configure:4722: $? = 0 configure:4740: mpif77 -o conftest -g -O2 -v conftest.f -lz -llapack -lblas Using built-in specs. Target: x86_64-apple-darwin19 Thread model: posix Supported LTO compression algorithms: zlib gcc version 10.2.0 (Homebrew GCC 10.2.0_4) /usr/local/Cellar/gcc/10.2.0_4/libexec/gcc/x86_64-apple-darwin19/10.2.0/f951 conftest.f -ffixed-form -I /usr/local/Cellar/open-mpi/4.1.0/include -I /usr/local/Cellar/open-mpi/4.1.0/lib -fPIC -feliminate-unused-debug-symbols -quiet -dumpbase conftest.f -mmacosx-version-min=10.15.0 -mtune=core2 -auxbase conftest -g -O2 -version -fintrinsic-modules-path /usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/finclude -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//cc6IZ17l.s GNU Fortran (Homebrew GCC 10.2.0_4) version 10.2.0 (x86_64-apple-darwin19) compiled by GNU C version 10.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.23-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GNU Fortran2008 (Homebrew GCC 10.2.0_4) version 10.2.0 (x86_64-apple-darwin19) compiled by GNU C version 10.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.23-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 as -arch x86_64 -v -I /usr/local/Cellar/open-mpi/4.1.0/include -I /usr/local/Cellar/open-mpi/4.1.0/lib -force_cpusubtype_ALL -mmacosx-version-min=10.15 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//ccnYkSfK.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//cc6IZ17l.s Apple clang version 12.0.0 (clang-1200.0.32.29) Target: x86_64-apple-darwin19.6.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin "/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang" -cc1as -triple x86_64-apple-macosx10.15.0 -filetype obj -main-file-name cc6IZ17l.s -target-cpu penryn -I /usr/local/Cellar/open-mpi/4.1.0/include -I /usr/local/Cellar/open-mpi/4.1.0/lib -fdebug-compilation-dir /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/externalpackages/git.p4est -dwarf-debug-producer "Apple clang version 12.0.0 (clang-1200.0.32.29)" -I /usr/local/Cellar/open-mpi/4.1.0/include -I /usr/local/Cellar/open-mpi/4.1.0/lib -dwarf-version=4 -mrelocation-model pic -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//ccnYkSfK.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//cc6IZ17l.s Reading specs from /usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../../libgfortran.spec rename spec lib to liborig /usr/local/Cellar/gcc/10.2.0_4/libexec/gcc/x86_64-apple-darwin19/10.2.0/collect2 -syslibroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/ -dynamic -arch x86_64 -macosx_version_min 10.15.0 -weak_reference_mismatches non-weak -o conftest -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//ccnYkSfK.o -lz -llapack -lblas -flat_namespace -commons use_dylibs -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -no_compact_unwind -v -idsym -dsym collect2 version 10.2.0 /usr/bin/ld -syslibroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/ -dynamic -arch x86_64 -macosx_version_min 10.15.0 -weak_reference_mismatches non-weak -o conftest -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//ccnYkSfK.o -lz -llapack -lblas -flat_namespace -commons use_dylibs -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -no_compact_unwind -v @(#)PROGRAM:ld PROJECT:ld64-609.8 BUILD 15:07:46 Dec 18 2020 configured to support archs: armv6 armv7 armv7s arm64 arm64e arm64_32 i386 x86_64 x86_64h armv6m armv7k armv7m armv7em Library search paths: /usr/local/opt/libevent/lib /usr/local/Cellar/open-mpi/4.1.0/lib /usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 /usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10 /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/lib Framework search paths: /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/ dsymutil conftest configure:4823: result: -v configure:4825: checking for Fortran 77 libraries of mpif77 configure:4848: mpif77 -o conftest -g -O2 -v conftest.f -lz -llapack -lblas Using built-in specs. Target: x86_64-apple-darwin19 Thread model: posix Supported LTO compression algorithms: zlib gcc version 10.2.0 (Homebrew GCC 10.2.0_4) /usr/local/Cellar/gcc/10.2.0_4/libexec/gcc/x86_64-apple-darwin19/10.2.0/f951 conftest.f -ffixed-form -I /usr/local/Cellar/open-mpi/4.1.0/include -I /usr/local/Cellar/open-mpi/4.1.0/lib -fPIC -feliminate-unused-debug-symbols -quiet -dumpbase conftest.f -mmacosx-version-min=10.15.0 -mtune=core2 -auxbase conftest -g -O2 -version -fintrinsic-modules-path /usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/finclude -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//ccsvHBGZ.s GNU Fortran (Homebrew GCC 10.2.0_4) version 10.2.0 (x86_64-apple-darwin19) compiled by GNU C version 10.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.23-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GNU Fortran2008 (Homebrew GCC 10.2.0_4) version 10.2.0 (x86_64-apple-darwin19) compiled by GNU C version 10.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.23-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 as -arch x86_64 -v -I /usr/local/Cellar/open-mpi/4.1.0/include -I /usr/local/Cellar/open-mpi/4.1.0/lib -force_cpusubtype_ALL -mmacosx-version-min=10.15 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//cc7eyQSd.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//ccsvHBGZ.s Apple clang version 12.0.0 (clang-1200.0.32.29) Target: x86_64-apple-darwin19.6.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin "/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang" -cc1as -triple x86_64-apple-macosx10.15.0 -filetype obj -main-file-name ccsvHBGZ.s -target-cpu penryn -I /usr/local/Cellar/open-mpi/4.1.0/include -I /usr/local/Cellar/open-mpi/4.1.0/lib -fdebug-compilation-dir /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/externalpackages/git.p4est -dwarf-debug-producer "Apple clang version 12.0.0 (clang-1200.0.32.29)" -I /usr/local/Cellar/open-mpi/4.1.0/include -I /usr/local/Cellar/open-mpi/4.1.0/lib -dwarf-version=4 -mrelocation-model pic -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//cc7eyQSd.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//ccsvHBGZ.s Reading specs from /usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../../libgfortran.spec rename spec lib to liborig /usr/local/Cellar/gcc/10.2.0_4/libexec/gcc/x86_64-apple-darwin19/10.2.0/collect2 -syslibroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/ -dynamic -arch x86_64 -macosx_version_min 10.15.0 -weak_reference_mismatches non-weak -o conftest -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//cc7eyQSd.o -lz -llapack -lblas -flat_namespace -commons use_dylibs -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -no_compact_unwind -v -idsym -dsym collect2 version 10.2.0 /usr/bin/ld -syslibroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/ -dynamic -arch x86_64 -macosx_version_min 10.15.0 -weak_reference_mismatches non-weak -o conftest -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T//cc7eyQSd.o -lz -llapack -lblas -flat_namespace -commons use_dylibs -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -no_compact_unwind -v @(#)PROGRAM:ld PROJECT:ld64-609.8 BUILD 15:07:46 Dec 18 2020 configured to support archs: armv6 armv7 armv7s arm64 arm64e arm64_32 i386 x86_64 x86_64h armv6m armv7k armv7m armv7em Library search paths: /usr/local/opt/libevent/lib /usr/local/Cellar/open-mpi/4.1.0/lib /usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 /usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10 /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/lib Framework search paths: /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/ dsymutil conftest configure:5044: result: -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. -lz -llapack -lblas -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm configure:5067: checking for style of include used by /usr/bin/make configure:5095: result: GNU configure:5166: checking for gcc configure:5193: result: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc configure:5422: checking for C compiler version configure:5431: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc --version >&5 clang version 11.1.0 Target: x86_64-apple-darwin19.6.0 Thread model: posix InstalledDir: /usr/local/opt/llvm/bin configure:5442: $? = 0 configure:5431: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -v >&5 mpicc for MPICH version 3.4.1 clang version 11.1.0 Target: x86_64-apple-darwin19.6.0 Thread model: posix InstalledDir: /usr/local/opt/llvm/bin clang-11: warning: argument unused during compilation: '-fgnu89-inline' [-Wunused-command-line-argument] clang-11: warning: argument unused during compilation: '-Wno-deprecated' [-Wunused-command-line-argument] clang-11: warning: argument unused during compilation: '-g' [-Wunused-command-line-argument] clang-11: warning: argument unused during compilation: '-I /usr/local/Cellar/mpich/3.4.1_1/include' [-Wunused-command-line-argument] configure:5442: $? = 0 configure:5431: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -V >&5 clang-11: error: unsupported option '-V -I/usr/local/Cellar/mpich/3.4.1_1/include' configure:5442: $? = 1 configure:5431: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -qversion >&5 clang-11: error: unknown argument '-qversion'; did you mean '--version'? configure:5442: $? = 1 configure:5446: checking whether we are using the GNU C compiler configure:5473: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration -I/usr/local/Cellar/mpich/3.4.1_1/include conftest.c >&5 configure:5473: $? = 0 configure:5482: result: yes configure:5491: checking whether /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc accepts -g configure:5519: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -g -I/usr/local/Cellar/mpich/3.4.1_1/include conftest.c >&5 configure:5519: $? = 0 configure:5576: result: yes configure:5593: checking for /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc option to accept ISO C89 configure:5664: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration -I/usr/local/Cellar/mpich/3.4.1_1/include conftest.c >&5 configure:5664: $? = 0 configure:5677: result: none needed configure:5702: checking whether /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc understands -c and -o together configure:5732: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c conftest.c -o conftest2.o configure:5735: $? = 0 configure:5732: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -c conftest.c -o conftest2.o configure:5735: $? = 0 configure:5747: result: yes configure:5766: checking dependency style of /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc configure:5877: result: gcc3 configure:5898: checking for dummy main to link with Fortran 77 libraries configure:5932: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o conftest -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration -I/usr/local/Cellar/mpich/3.4.1_1/include conftest.c -lz -llapack -lblas -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. -lz -llapack -lblas -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm >&5 Undefined symbols for architecture x86_64: "_ADIOI_Datarep_head", referenced from: import-atom in libpmpi.dylib "_ADIOI_Datatype_iscontig", referenced from: import-atom in libpmpi.dylib "_ADIOI_Free_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_byte_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_eof_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_position", referenced from: import-atom in libpmpi.dylib "_ADIOI_Malloc_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Shfp_fname", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strdup", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strncpy", referenced from: import-atom in libpmpi.dylib "_ADIO_Close", referenced from: import-atom in libpmpi.dylib "_ADIO_Get_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_ImmediateOpen", referenced from: import-atom in libpmpi.dylib "_ADIO_Open", referenced from: import-atom in libpmpi.dylib "_ADIO_ResolveFileType", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_view", referenced from: import-atom in libpmpi.dylib "_ADIO_same_amode", referenced from: import-atom in libpmpi.dylib "_MPIO_Completed_request_create", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_create_code", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_return_file", referenced from: import-atom in libpmpi.dylib "_MPIO_File_c2f", referenced from: import-atom in libpmpi.dylib "_MPIO_File_f2c", referenced from: import-atom in libpmpi.dylib "_MPIO_File_free", referenced from: import-atom in libpmpi.dylib "_MPIO_File_resolve", referenced from: import-atom in libpmpi.dylib "_MPIR_Comm_split_filesystem", referenced from: import-atom in libpmpi.dylib "_MPIR_MPIOInit", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Get_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Set_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_Status_set_bytes", referenced from: import-atom in libpmpi.dylib "_MPIU_datatype_full_size", referenced from: import-atom in libpmpi.dylib "_MPIU_external32_buffer_setup", referenced from: import-atom in libpmpi.dylib "_MPIU_read_external32_conversion_fn", referenced from: import-atom in libpmpi.dylib ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) configure:5932: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "p4est" | #define PACKAGE_TARNAME "p4est" | #define PACKAGE_VERSION "2.0.7-1727" | #define PACKAGE_STRING "p4est 2.0.7-1727" | #define PACKAGE_BUGREPORT "info@p4est.org" | #define PACKAGE_URL "" | #define PACKAGE "p4est" | #define VERSION "2.0.7-1727" | #define VERSION_MAJOR 2 | #define VERSION_MINOR 0 | #define VERSION_POINT 7-1727 | #define VTK_BINARY 1 | #define ENABLE_VTK_BINARY 1 | #define VTK_COMPRESSION 1 | #define ENABLE_VTK_COMPRESSION 1 | #define BUILD_2D 1 | #define ENABLE_BUILD_2D 1 | #define BUILD_3D 1 | #define ENABLE_BUILD_3D 1 | #define BUILD_P6EST 1 | #define ENABLE_BUILD_P6EST 1 | #define MPI 1 | #define ENABLE_MPI 1 | #define MPIIO 1 | #define ENABLE_MPIIO 1 | #define ENABLE_MPITHREAD 1 | /* end confdefs.h. */ | | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | | ; | return 0; | } configure:5961: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o conftest -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration -I/usr/local/Cellar/mpich/3.4.1_1/include conftest.c -lz -llapack -lblas -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. -lz -llapack -lblas -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm >&5 Undefined symbols for architecture x86_64: "_ADIOI_Datarep_head", referenced from: import-atom in libpmpi.dylib "_ADIOI_Datatype_iscontig", referenced from: import-atom in libpmpi.dylib "_ADIOI_Free_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_byte_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_eof_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_position", referenced from: import-atom in libpmpi.dylib "_ADIOI_Malloc_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Shfp_fname", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strdup", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strncpy", referenced from: import-atom in libpmpi.dylib "_ADIO_Close", referenced from: import-atom in libpmpi.dylib "_ADIO_Get_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_ImmediateOpen", referenced from: import-atom in libpmpi.dylib "_ADIO_Open", referenced from: import-atom in libpmpi.dylib "_ADIO_ResolveFileType", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_view", referenced from: import-atom in libpmpi.dylib "_ADIO_same_amode", referenced from: import-atom in libpmpi.dylib "_MPIO_Completed_request_create", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_create_code", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_return_file", referenced from: import-atom in libpmpi.dylib "_MPIO_File_c2f", referenced from: import-atom in libpmpi.dylib "_MPIO_File_f2c", referenced from: import-atom in libpmpi.dylib "_MPIO_File_free", referenced from: import-atom in libpmpi.dylib "_MPIO_File_resolve", referenced from: import-atom in libpmpi.dylib "_MPIR_Comm_split_filesystem", referenced from: import-atom in libpmpi.dylib "_MPIR_MPIOInit", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Get_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Set_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_Status_set_bytes", referenced from: import-atom in libpmpi.dylib "_MPIU_datatype_full_size", referenced from: import-atom in libpmpi.dylib "_MPIU_external32_buffer_setup", referenced from: import-atom in libpmpi.dylib "_MPIU_read_external32_conversion_fn", referenced from: import-atom in libpmpi.dylib ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) configure:5961: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "p4est" | #define PACKAGE_TARNAME "p4est" | #define PACKAGE_VERSION "2.0.7-1727" | #define PACKAGE_STRING "p4est 2.0.7-1727" | #define PACKAGE_BUGREPORT "info@p4est.org" | #define PACKAGE_URL "" | #define PACKAGE "p4est" | #define VERSION "2.0.7-1727" | #define VERSION_MAJOR 2 | #define VERSION_MINOR 0 | #define VERSION_POINT 7-1727 | #define VTK_BINARY 1 | #define ENABLE_VTK_BINARY 1 | #define VTK_COMPRESSION 1 | #define ENABLE_VTK_COMPRESSION 1 | #define BUILD_2D 1 | #define ENABLE_BUILD_2D 1 | #define BUILD_3D 1 | #define ENABLE_BUILD_3D 1 | #define BUILD_P6EST 1 | #define ENABLE_BUILD_P6EST 1 | #define MPI 1 | #define ENABLE_MPI 1 | #define MPIIO 1 | #define ENABLE_MPIIO 1 | #define ENABLE_MPITHREAD 1 | /* end confdefs.h. */ | #define F77_DUMMY_MAIN MAIN__ | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | | ; | return 0; | } configure:5961: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o conftest -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration -I/usr/local/Cellar/mpich/3.4.1_1/include conftest.c -lz -llapack -lblas -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. -lz -llapack -lblas -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm >&5 Undefined symbols for architecture x86_64: "_ADIOI_Datarep_head", referenced from: import-atom in libpmpi.dylib "_ADIOI_Datatype_iscontig", referenced from: import-atom in libpmpi.dylib "_ADIOI_Free_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_byte_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_eof_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_position", referenced from: import-atom in libpmpi.dylib "_ADIOI_Malloc_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Shfp_fname", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strdup", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strncpy", referenced from: import-atom in libpmpi.dylib "_ADIO_Close", referenced from: import-atom in libpmpi.dylib "_ADIO_Get_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_ImmediateOpen", referenced from: import-atom in libpmpi.dylib "_ADIO_Open", referenced from: import-atom in libpmpi.dylib "_ADIO_ResolveFileType", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_view", referenced from: import-atom in libpmpi.dylib "_ADIO_same_amode", referenced from: import-atom in libpmpi.dylib "_MPIO_Completed_request_create", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_create_code", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_return_file", referenced from: import-atom in libpmpi.dylib "_MPIO_File_c2f", referenced from: import-atom in libpmpi.dylib "_MPIO_File_f2c", referenced from: import-atom in libpmpi.dylib "_MPIO_File_free", referenced from: import-atom in libpmpi.dylib "_MPIO_File_resolve", referenced from: import-atom in libpmpi.dylib "_MPIR_Comm_split_filesystem", referenced from: import-atom in libpmpi.dylib "_MPIR_MPIOInit", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Get_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Set_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_Status_set_bytes", referenced from: import-atom in libpmpi.dylib "_MPIU_datatype_full_size", referenced from: import-atom in libpmpi.dylib "_MPIU_external32_buffer_setup", referenced from: import-atom in libpmpi.dylib "_MPIU_read_external32_conversion_fn", referenced from: import-atom in libpmpi.dylib ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) configure:5961: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "p4est" | #define PACKAGE_TARNAME "p4est" | #define PACKAGE_VERSION "2.0.7-1727" | #define PACKAGE_STRING "p4est 2.0.7-1727" | #define PACKAGE_BUGREPORT "info@p4est.org" | #define PACKAGE_URL "" | #define PACKAGE "p4est" | #define VERSION "2.0.7-1727" | #define VERSION_MAJOR 2 | #define VERSION_MINOR 0 | #define VERSION_POINT 7-1727 | #define VTK_BINARY 1 | #define ENABLE_VTK_BINARY 1 | #define VTK_COMPRESSION 1 | #define ENABLE_VTK_COMPRESSION 1 | #define BUILD_2D 1 | #define ENABLE_BUILD_2D 1 | #define BUILD_3D 1 | #define ENABLE_BUILD_3D 1 | #define BUILD_P6EST 1 | #define ENABLE_BUILD_P6EST 1 | #define MPI 1 | #define ENABLE_MPI 1 | #define MPIIO 1 | #define ENABLE_MPIIO 1 | #define ENABLE_MPITHREAD 1 | /* end confdefs.h. */ | #define F77_DUMMY_MAIN MAIN_ | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | | ; | return 0; | } configure:5961: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o conftest -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration -I/usr/local/Cellar/mpich/3.4.1_1/include conftest.c -lz -llapack -lblas -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. -lz -llapack -lblas -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm >&5 Undefined symbols for architecture x86_64: "_ADIOI_Datarep_head", referenced from: import-atom in libpmpi.dylib "_ADIOI_Datatype_iscontig", referenced from: import-atom in libpmpi.dylib "_ADIOI_Free_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_byte_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_eof_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_position", referenced from: import-atom in libpmpi.dylib "_ADIOI_Malloc_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Shfp_fname", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strdup", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strncpy", referenced from: import-atom in libpmpi.dylib "_ADIO_Close", referenced from: import-atom in libpmpi.dylib "_ADIO_Get_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_ImmediateOpen", referenced from: import-atom in libpmpi.dylib "_ADIO_Open", referenced from: import-atom in libpmpi.dylib "_ADIO_ResolveFileType", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_view", referenced from: import-atom in libpmpi.dylib "_ADIO_same_amode", referenced from: import-atom in libpmpi.dylib "_MPIO_Completed_request_create", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_create_code", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_return_file", referenced from: import-atom in libpmpi.dylib "_MPIO_File_c2f", referenced from: import-atom in libpmpi.dylib "_MPIO_File_f2c", referenced from: import-atom in libpmpi.dylib "_MPIO_File_free", referenced from: import-atom in libpmpi.dylib "_MPIO_File_resolve", referenced from: import-atom in libpmpi.dylib "_MPIR_Comm_split_filesystem", referenced from: import-atom in libpmpi.dylib "_MPIR_MPIOInit", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Get_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Set_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_Status_set_bytes", referenced from: import-atom in libpmpi.dylib "_MPIU_datatype_full_size", referenced from: import-atom in libpmpi.dylib "_MPIU_external32_buffer_setup", referenced from: import-atom in libpmpi.dylib "_MPIU_read_external32_conversion_fn", referenced from: import-atom in libpmpi.dylib ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) configure:5961: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "p4est" | #define PACKAGE_TARNAME "p4est" | #define PACKAGE_VERSION "2.0.7-1727" | #define PACKAGE_STRING "p4est 2.0.7-1727" | #define PACKAGE_BUGREPORT "info@p4est.org" | #define PACKAGE_URL "" | #define PACKAGE "p4est" | #define VERSION "2.0.7-1727" | #define VERSION_MAJOR 2 | #define VERSION_MINOR 0 | #define VERSION_POINT 7-1727 | #define VTK_BINARY 1 | #define ENABLE_VTK_BINARY 1 | #define VTK_COMPRESSION 1 | #define ENABLE_VTK_COMPRESSION 1 | #define BUILD_2D 1 | #define ENABLE_BUILD_2D 1 | #define BUILD_3D 1 | #define ENABLE_BUILD_3D 1 | #define BUILD_P6EST 1 | #define ENABLE_BUILD_P6EST 1 | #define MPI 1 | #define ENABLE_MPI 1 | #define MPIIO 1 | #define ENABLE_MPIIO 1 | #define ENABLE_MPITHREAD 1 | /* end confdefs.h. */ | #define F77_DUMMY_MAIN __main | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | | ; | return 0; | } configure:5961: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o conftest -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration -I/usr/local/Cellar/mpich/3.4.1_1/include conftest.c -lz -llapack -lblas -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. -lz -llapack -lblas -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm >&5 Undefined symbols for architecture x86_64: "_ADIOI_Datarep_head", referenced from: import-atom in libpmpi.dylib "_ADIOI_Datatype_iscontig", referenced from: import-atom in libpmpi.dylib "_ADIOI_Free_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_byte_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_eof_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_position", referenced from: import-atom in libpmpi.dylib "_ADIOI_Malloc_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Shfp_fname", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strdup", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strncpy", referenced from: import-atom in libpmpi.dylib "_ADIO_Close", referenced from: import-atom in libpmpi.dylib "_ADIO_Get_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_ImmediateOpen", referenced from: import-atom in libpmpi.dylib "_ADIO_Open", referenced from: import-atom in libpmpi.dylib "_ADIO_ResolveFileType", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_view", referenced from: import-atom in libpmpi.dylib "_ADIO_same_amode", referenced from: import-atom in libpmpi.dylib "_MPIO_Completed_request_create", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_create_code", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_return_file", referenced from: import-atom in libpmpi.dylib "_MPIO_File_c2f", referenced from: import-atom in libpmpi.dylib "_MPIO_File_f2c", referenced from: import-atom in libpmpi.dylib "_MPIO_File_free", referenced from: import-atom in libpmpi.dylib "_MPIO_File_resolve", referenced from: import-atom in libpmpi.dylib "_MPIR_Comm_split_filesystem", referenced from: import-atom in libpmpi.dylib "_MPIR_MPIOInit", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Get_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Set_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_Status_set_bytes", referenced from: import-atom in libpmpi.dylib "_MPIU_datatype_full_size", referenced from: import-atom in libpmpi.dylib "_MPIU_external32_buffer_setup", referenced from: import-atom in libpmpi.dylib "_MPIU_read_external32_conversion_fn", referenced from: import-atom in libpmpi.dylib ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) configure:5961: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "p4est" | #define PACKAGE_TARNAME "p4est" | #define PACKAGE_VERSION "2.0.7-1727" | #define PACKAGE_STRING "p4est 2.0.7-1727" | #define PACKAGE_BUGREPORT "info@p4est.org" | #define PACKAGE_URL "" | #define PACKAGE "p4est" | #define VERSION "2.0.7-1727" | #define VERSION_MAJOR 2 | #define VERSION_MINOR 0 | #define VERSION_POINT 7-1727 | #define VTK_BINARY 1 | #define ENABLE_VTK_BINARY 1 | #define VTK_COMPRESSION 1 | #define ENABLE_VTK_COMPRESSION 1 | #define BUILD_2D 1 | #define ENABLE_BUILD_2D 1 | #define BUILD_3D 1 | #define ENABLE_BUILD_3D 1 | #define BUILD_P6EST 1 | #define ENABLE_BUILD_P6EST 1 | #define MPI 1 | #define ENABLE_MPI 1 | #define MPIIO 1 | #define ENABLE_MPIIO 1 | #define ENABLE_MPITHREAD 1 | /* end confdefs.h. */ | #define F77_DUMMY_MAIN MAIN | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | | ; | return 0; | } configure:5961: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o conftest -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration -I/usr/local/Cellar/mpich/3.4.1_1/include conftest.c -lz -llapack -lblas -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. -lz -llapack -lblas -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm >&5 Undefined symbols for architecture x86_64: "_ADIOI_Datarep_head", referenced from: import-atom in libpmpi.dylib "_ADIOI_Datatype_iscontig", referenced from: import-atom in libpmpi.dylib "_ADIOI_Free_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_byte_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_eof_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_position", referenced from: import-atom in libpmpi.dylib "_ADIOI_Malloc_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Shfp_fname", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strdup", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strncpy", referenced from: import-atom in libpmpi.dylib "_ADIO_Close", referenced from: import-atom in libpmpi.dylib "_ADIO_Get_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_ImmediateOpen", referenced from: import-atom in libpmpi.dylib "_ADIO_Open", referenced from: import-atom in libpmpi.dylib "_ADIO_ResolveFileType", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_view", referenced from: import-atom in libpmpi.dylib "_ADIO_same_amode", referenced from: import-atom in libpmpi.dylib "_MPIO_Completed_request_create", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_create_code", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_return_file", referenced from: import-atom in libpmpi.dylib "_MPIO_File_c2f", referenced from: import-atom in libpmpi.dylib "_MPIO_File_f2c", referenced from: import-atom in libpmpi.dylib "_MPIO_File_free", referenced from: import-atom in libpmpi.dylib "_MPIO_File_resolve", referenced from: import-atom in libpmpi.dylib "_MPIR_Comm_split_filesystem", referenced from: import-atom in libpmpi.dylib "_MPIR_MPIOInit", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Get_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Set_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_Status_set_bytes", referenced from: import-atom in libpmpi.dylib "_MPIU_datatype_full_size", referenced from: import-atom in libpmpi.dylib "_MPIU_external32_buffer_setup", referenced from: import-atom in libpmpi.dylib "_MPIU_read_external32_conversion_fn", referenced from: import-atom in libpmpi.dylib ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) configure:5961: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "p4est" | #define PACKAGE_TARNAME "p4est" | #define PACKAGE_VERSION "2.0.7-1727" | #define PACKAGE_STRING "p4est 2.0.7-1727" | #define PACKAGE_BUGREPORT "info@p4est.org" | #define PACKAGE_URL "" | #define PACKAGE "p4est" | #define VERSION "2.0.7-1727" | #define VERSION_MAJOR 2 | #define VERSION_MINOR 0 | #define VERSION_POINT 7-1727 | #define VTK_BINARY 1 | #define ENABLE_VTK_BINARY 1 | #define VTK_COMPRESSION 1 | #define ENABLE_VTK_COMPRESSION 1 | #define BUILD_2D 1 | #define ENABLE_BUILD_2D 1 | #define BUILD_3D 1 | #define ENABLE_BUILD_3D 1 | #define BUILD_P6EST 1 | #define ENABLE_BUILD_P6EST 1 | #define MPI 1 | #define ENABLE_MPI 1 | #define MPIIO 1 | #define ENABLE_MPIIO 1 | #define ENABLE_MPITHREAD 1 | /* end confdefs.h. */ | #define F77_DUMMY_MAIN _MAIN | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | | ; | return 0; | } configure:5961: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o conftest -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration -I/usr/local/Cellar/mpich/3.4.1_1/include conftest.c -lz -llapack -lblas -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. -lz -llapack -lblas -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm >&5 Undefined symbols for architecture x86_64: "_ADIOI_Datarep_head", referenced from: import-atom in libpmpi.dylib "_ADIOI_Datatype_iscontig", referenced from: import-atom in libpmpi.dylib "_ADIOI_Free_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_byte_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_eof_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_position", referenced from: import-atom in libpmpi.dylib "_ADIOI_Malloc_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Shfp_fname", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strdup", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strncpy", referenced from: import-atom in libpmpi.dylib "_ADIO_Close", referenced from: import-atom in libpmpi.dylib "_ADIO_Get_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_ImmediateOpen", referenced from: import-atom in libpmpi.dylib "_ADIO_Open", referenced from: import-atom in libpmpi.dylib "_ADIO_ResolveFileType", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_view", referenced from: import-atom in libpmpi.dylib "_ADIO_same_amode", referenced from: import-atom in libpmpi.dylib "_MPIO_Completed_request_create", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_create_code", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_return_file", referenced from: import-atom in libpmpi.dylib "_MPIO_File_c2f", referenced from: import-atom in libpmpi.dylib "_MPIO_File_f2c", referenced from: import-atom in libpmpi.dylib "_MPIO_File_free", referenced from: import-atom in libpmpi.dylib "_MPIO_File_resolve", referenced from: import-atom in libpmpi.dylib "_MPIR_Comm_split_filesystem", referenced from: import-atom in libpmpi.dylib "_MPIR_MPIOInit", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Get_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Set_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_Status_set_bytes", referenced from: import-atom in libpmpi.dylib "_MPIU_datatype_full_size", referenced from: import-atom in libpmpi.dylib "_MPIU_external32_buffer_setup", referenced from: import-atom in libpmpi.dylib "_MPIU_read_external32_conversion_fn", referenced from: import-atom in libpmpi.dylib ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) configure:5961: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "p4est" | #define PACKAGE_TARNAME "p4est" | #define PACKAGE_VERSION "2.0.7-1727" | #define PACKAGE_STRING "p4est 2.0.7-1727" | #define PACKAGE_BUGREPORT "info@p4est.org" | #define PACKAGE_URL "" | #define PACKAGE "p4est" | #define VERSION "2.0.7-1727" | #define VERSION_MAJOR 2 | #define VERSION_MINOR 0 | #define VERSION_POINT 7-1727 | #define VTK_BINARY 1 | #define ENABLE_VTK_BINARY 1 | #define VTK_COMPRESSION 1 | #define ENABLE_VTK_COMPRESSION 1 | #define BUILD_2D 1 | #define ENABLE_BUILD_2D 1 | #define BUILD_3D 1 | #define ENABLE_BUILD_3D 1 | #define BUILD_P6EST 1 | #define ENABLE_BUILD_P6EST 1 | #define MPI 1 | #define ENABLE_MPI 1 | #define MPIIO 1 | #define ENABLE_MPIIO 1 | #define ENABLE_MPITHREAD 1 | /* end confdefs.h. */ | #define F77_DUMMY_MAIN __MAIN | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | | ; | return 0; | } configure:5961: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o conftest -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration -I/usr/local/Cellar/mpich/3.4.1_1/include conftest.c -lz -llapack -lblas -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. -lz -llapack -lblas -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm >&5 Undefined symbols for architecture x86_64: "_ADIOI_Datarep_head", referenced from: import-atom in libpmpi.dylib "_ADIOI_Datatype_iscontig", referenced from: import-atom in libpmpi.dylib "_ADIOI_Free_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_byte_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_eof_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_position", referenced from: import-atom in libpmpi.dylib "_ADIOI_Malloc_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Shfp_fname", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strdup", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strncpy", referenced from: import-atom in libpmpi.dylib "_ADIO_Close", referenced from: import-atom in libpmpi.dylib "_ADIO_Get_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_ImmediateOpen", referenced from: import-atom in libpmpi.dylib "_ADIO_Open", referenced from: import-atom in libpmpi.dylib "_ADIO_ResolveFileType", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_view", referenced from: import-atom in libpmpi.dylib "_ADIO_same_amode", referenced from: import-atom in libpmpi.dylib "_MPIO_Completed_request_create", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_create_code", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_return_file", referenced from: import-atom in libpmpi.dylib "_MPIO_File_c2f", referenced from: import-atom in libpmpi.dylib "_MPIO_File_f2c", referenced from: import-atom in libpmpi.dylib "_MPIO_File_free", referenced from: import-atom in libpmpi.dylib "_MPIO_File_resolve", referenced from: import-atom in libpmpi.dylib "_MPIR_Comm_split_filesystem", referenced from: import-atom in libpmpi.dylib "_MPIR_MPIOInit", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Get_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Set_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_Status_set_bytes", referenced from: import-atom in libpmpi.dylib "_MPIU_datatype_full_size", referenced from: import-atom in libpmpi.dylib "_MPIU_external32_buffer_setup", referenced from: import-atom in libpmpi.dylib "_MPIU_read_external32_conversion_fn", referenced from: import-atom in libpmpi.dylib ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) configure:5961: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "p4est" | #define PACKAGE_TARNAME "p4est" | #define PACKAGE_VERSION "2.0.7-1727" | #define PACKAGE_STRING "p4est 2.0.7-1727" | #define PACKAGE_BUGREPORT "info@p4est.org" | #define PACKAGE_URL "" | #define PACKAGE "p4est" | #define VERSION "2.0.7-1727" | #define VERSION_MAJOR 2 | #define VERSION_MINOR 0 | #define VERSION_POINT 7-1727 | #define VTK_BINARY 1 | #define ENABLE_VTK_BINARY 1 | #define VTK_COMPRESSION 1 | #define ENABLE_VTK_COMPRESSION 1 | #define BUILD_2D 1 | #define ENABLE_BUILD_2D 1 | #define BUILD_3D 1 | #define ENABLE_BUILD_3D 1 | #define BUILD_P6EST 1 | #define ENABLE_BUILD_P6EST 1 | #define MPI 1 | #define ENABLE_MPI 1 | #define MPIIO 1 | #define ENABLE_MPIIO 1 | #define ENABLE_MPITHREAD 1 | /* end confdefs.h. */ | #define F77_DUMMY_MAIN main_ | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | | ; | return 0; | } configure:5961: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o conftest -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration -I/usr/local/Cellar/mpich/3.4.1_1/include conftest.c -lz -llapack -lblas -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. -lz -llapack -lblas -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm >&5 Undefined symbols for architecture x86_64: "_ADIOI_Datarep_head", referenced from: import-atom in libpmpi.dylib "_ADIOI_Datatype_iscontig", referenced from: import-atom in libpmpi.dylib "_ADIOI_Free_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_byte_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_eof_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_position", referenced from: import-atom in libpmpi.dylib "_ADIOI_Malloc_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Shfp_fname", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strdup", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strncpy", referenced from: import-atom in libpmpi.dylib "_ADIO_Close", referenced from: import-atom in libpmpi.dylib "_ADIO_Get_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_ImmediateOpen", referenced from: import-atom in libpmpi.dylib "_ADIO_Open", referenced from: import-atom in libpmpi.dylib "_ADIO_ResolveFileType", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_view", referenced from: import-atom in libpmpi.dylib "_ADIO_same_amode", referenced from: import-atom in libpmpi.dylib "_MPIO_Completed_request_create", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_create_code", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_return_file", referenced from: import-atom in libpmpi.dylib "_MPIO_File_c2f", referenced from: import-atom in libpmpi.dylib "_MPIO_File_f2c", referenced from: import-atom in libpmpi.dylib "_MPIO_File_free", referenced from: import-atom in libpmpi.dylib "_MPIO_File_resolve", referenced from: import-atom in libpmpi.dylib "_MPIR_Comm_split_filesystem", referenced from: import-atom in libpmpi.dylib "_MPIR_MPIOInit", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Get_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Set_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_Status_set_bytes", referenced from: import-atom in libpmpi.dylib "_MPIU_datatype_full_size", referenced from: import-atom in libpmpi.dylib "_MPIU_external32_buffer_setup", referenced from: import-atom in libpmpi.dylib "_MPIU_read_external32_conversion_fn", referenced from: import-atom in libpmpi.dylib ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) configure:5961: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "p4est" | #define PACKAGE_TARNAME "p4est" | #define PACKAGE_VERSION "2.0.7-1727" | #define PACKAGE_STRING "p4est 2.0.7-1727" | #define PACKAGE_BUGREPORT "info@p4est.org" | #define PACKAGE_URL "" | #define PACKAGE "p4est" | #define VERSION "2.0.7-1727" | #define VERSION_MAJOR 2 | #define VERSION_MINOR 0 | #define VERSION_POINT 7-1727 | #define VTK_BINARY 1 | #define ENABLE_VTK_BINARY 1 | #define VTK_COMPRESSION 1 | #define ENABLE_VTK_COMPRESSION 1 | #define BUILD_2D 1 | #define ENABLE_BUILD_2D 1 | #define BUILD_3D 1 | #define ENABLE_BUILD_3D 1 | #define BUILD_P6EST 1 | #define ENABLE_BUILD_P6EST 1 | #define MPI 1 | #define ENABLE_MPI 1 | #define MPIIO 1 | #define ENABLE_MPIIO 1 | #define ENABLE_MPITHREAD 1 | /* end confdefs.h. */ | #define F77_DUMMY_MAIN main__ | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | | ; | return 0; | } configure:5961: /usr/local/Cellar/mpich/3.4.1_1/bin/mpicc -o conftest -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration -I/usr/local/Cellar/mpich/3.4.1_1/include conftest.c -lz -llapack -lblas -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. -lz -llapack -lblas -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm >&5 Undefined symbols for architecture x86_64: "_ADIOI_Datarep_head", referenced from: import-atom in libpmpi.dylib "_ADIOI_Datatype_iscontig", referenced from: import-atom in libpmpi.dylib "_ADIOI_Free_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_byte_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_eof_offset", referenced from: import-atom in libpmpi.dylib "_ADIOI_Get_position", referenced from: import-atom in libpmpi.dylib "_ADIOI_Malloc_fn", referenced from: import-atom in libpmpi.dylib "_ADIOI_Shfp_fname", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strdup", referenced from: import-atom in libpmpi.dylib "_ADIOI_Strncpy", referenced from: import-atom in libpmpi.dylib "_ADIO_Close", referenced from: import-atom in libpmpi.dylib "_ADIO_Get_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_ImmediateOpen", referenced from: import-atom in libpmpi.dylib "_ADIO_Open", referenced from: import-atom in libpmpi.dylib "_ADIO_ResolveFileType", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_shared_fp", referenced from: import-atom in libpmpi.dylib "_ADIO_Set_view", referenced from: import-atom in libpmpi.dylib "_ADIO_same_amode", referenced from: import-atom in libpmpi.dylib "_MPIO_Completed_request_create", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_create_code", referenced from: import-atom in libpmpi.dylib "_MPIO_Err_return_file", referenced from: import-atom in libpmpi.dylib "_MPIO_File_c2f", referenced from: import-atom in libpmpi.dylib "_MPIO_File_f2c", referenced from: import-atom in libpmpi.dylib "_MPIO_File_free", referenced from: import-atom in libpmpi.dylib "_MPIO_File_resolve", referenced from: import-atom in libpmpi.dylib "_MPIR_Comm_split_filesystem", referenced from: import-atom in libpmpi.dylib "_MPIR_MPIOInit", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Get_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_ROMIO_Set_file_errhand", referenced from: import-atom in libpmpi.dylib "_MPIR_Status_set_bytes", referenced from: import-atom in libpmpi.dylib "_MPIU_datatype_full_size", referenced from: import-atom in libpmpi.dylib "_MPIU_external32_buffer_setup", referenced from: import-atom in libpmpi.dylib "_MPIU_read_external32_conversion_fn", referenced from: import-atom in libpmpi.dylib ld: symbol(s) not found for architecture x86_64 clang-11: error: linker command failed with exit code 1 (use -v to see invocation) configure:5961: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "p4est" | #define PACKAGE_TARNAME "p4est" | #define PACKAGE_VERSION "2.0.7-1727" | #define PACKAGE_STRING "p4est 2.0.7-1727" | #define PACKAGE_BUGREPORT "info@p4est.org" | #define PACKAGE_URL "" | #define PACKAGE "p4est" | #define VERSION "2.0.7-1727" | #define VERSION_MAJOR 2 | #define VERSION_MINOR 0 | #define VERSION_POINT 7-1727 | #define VTK_BINARY 1 | #define ENABLE_VTK_BINARY 1 | #define VTK_COMPRESSION 1 | #define ENABLE_VTK_COMPRESSION 1 | #define BUILD_2D 1 | #define ENABLE_BUILD_2D 1 | #define BUILD_3D 1 | #define ENABLE_BUILD_3D 1 | #define BUILD_P6EST 1 | #define ENABLE_BUILD_P6EST 1 | #define MPI 1 | #define ENABLE_MPI 1 | #define MPIIO 1 | #define ENABLE_MPIIO 1 | #define ENABLE_MPITHREAD 1 | /* end confdefs.h. */ | #define F77_DUMMY_MAIN _main | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | | ; | return 0; | } configure:5977: result: unknown configure:5994: error: in `/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/externalpackages/git.p4est': configure:5996: error: linking to Fortran libraries from C fails See `config.log' for more details ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-apple-darwin19.6.0 ac_cv_c_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set=set ac_cv_env_CC_value=/usr/local/Cellar/mpich/3.4.1_1/bin/mpicc ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value=-I/usr/local/Cellar/mpich/3.4.1_1/include ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-fstack-protector -fno-stack-check -g -O0' ac_cv_env_CXX_set=set ac_cv_env_CXX_value=/usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FC_set= ac_cv_env_FC_value= ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set=set ac_cv_env_LIBS_value='-lz -llapack -lblas' ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=yes ac_cv_f77_dummy_main=unknown ac_cv_f77_libs=' -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. -lz -llapack -lblas -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm' ac_cv_fortran_dummy_main=unknown ac_cv_host=x86_64-apple-darwin19.6.0 ac_cv_objext=o ac_cv_path_SED=/usr/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AWK=awk ac_cv_prog_P4EST_MPIRUN=mpiexec ac_cv_prog_ac_ct_CC=/usr/local/Cellar/mpich/3.4.1_1/bin/mpicc ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_f77_g=yes ac_cv_prog_f77_v=-v ac_cv_prog_make__usr_bin_make_set=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/externalpackages/git.p4est/build-aux/missing aclocal-1.14' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='/usr/bin/ar' AUTOCONF='${SHELL} /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/externalpackages/git.p4est/build-aux/missing autoconf' AUTOHEADER='${SHELL} /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/externalpackages/git.p4est/build-aux/missing autoheader' AUTOMAKE='${SHELL} /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/externalpackages/git.p4est/build-aux/missing automake-1.14' AWK='awk' CC='/usr/local/Cellar/mpich/3.4.1_1/bin/mpicc' CCDEPMODE='depmode=gcc3' CFLAGS='-fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration' CPP='' CPPFLAGS='-I/usr/local/Cellar/mpich/3.4.1_1/include' CXX='/usr/local/Cellar/mpich/3.4.1_1/bin/mpicxx' CXXCPP='' CXXDEPMODE='' CXXFLAGS='-fstack-protector -fno-stack-check -g -O0' CYGPATH_W='echo' C_VERSION='' DEFS='' DEPDIR='.deps' DLLTOOL='' DSYMUTIL='' DUMPBIN='' ECHO_C='\c' ECHO_N='' ECHO_T='' EGREP='' EXEEXT='' F77='mpif77' FC='mpif90' FCFLAGS='' FCLIBS='' FFLAGS='-g -O2' FGREP='' FLIBS=' -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/4.1.0/lib -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. -lz -llapack -lblas -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm' GREP='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='' LDFLAGS='' LIBOBJS='' LIBS='-lz -llapack -lblas' LIBTOOL='' LINT='' LINT_FALSE='' LINT_FLAGS='' LINT_TRUE='' LIPO='' LN_S='' LTLIBOBJS='' MAKEINFO='${SHELL} /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/externalpackages/git.p4est/build-aux/missing makeinfo' MANIFEST_TOOL='' MKDIR_P='build-aux/install-sh -c -d' MPI_INCLUDES='' MPI_INCLUDE_PATH='' NM='' NMEDIT='' OBJDUMP='' OBJEXT='o' OTOOL64='' OTOOL='' P4EST_DISTCLEAN='' P4EST_DIST_DENY_FALSE='' P4EST_DIST_DENY_TRUE='' P4EST_ENABLE_BUILD_2D_FALSE='#' P4EST_ENABLE_BUILD_2D_TRUE='' P4EST_ENABLE_BUILD_3D_FALSE='#' P4EST_ENABLE_BUILD_3D_TRUE='' P4EST_ENABLE_BUILD_P6EST_FALSE='#' P4EST_ENABLE_BUILD_P6EST_TRUE='' P4EST_ENABLE_DEBUG_FALSE='' P4EST_ENABLE_DEBUG_TRUE='#' P4EST_ENABLE_MEMALIGN_FALSE='' P4EST_ENABLE_MEMALIGN_TRUE='' P4EST_ENABLE_MPIIO_FALSE='#' P4EST_ENABLE_MPIIO_TRUE='' P4EST_ENABLE_MPITHREAD_FALSE='#' P4EST_ENABLE_MPITHREAD_TRUE='' P4EST_ENABLE_MPI_FALSE='#' P4EST_ENABLE_MPI_TRUE='' P4EST_ENABLE_OPENMP_FALSE='' P4EST_ENABLE_OPENMP_TRUE='' P4EST_ENABLE_PTHREAD_FALSE='' P4EST_ENABLE_PTHREAD_TRUE='' P4EST_ENABLE_VTK_BINARY_FALSE='#' P4EST_ENABLE_VTK_BINARY_TRUE='' P4EST_ENABLE_VTK_COMPRESSION_FALSE='#' P4EST_ENABLE_VTK_COMPRESSION_TRUE='' P4EST_ENABLE_VTK_DOUBLES_FALSE='' P4EST_ENABLE_VTK_DOUBLES_TRUE='#' P4EST_F77_COMPILER='' P4EST_FC_COMPILER='' P4EST_HAVE_LPTHREAD_FALSE='' P4EST_HAVE_LPTHREAD_TRUE='' P4EST_HAVE_LUA_FALSE='' P4EST_HAVE_LUA_TRUE='' P4EST_HAVE_OPENMP_FALSE='' P4EST_HAVE_OPENMP_TRUE='' P4EST_HAVE_ZLIB_FALSE='' P4EST_HAVE_ZLIB_TRUE='' P4EST_MPIRUN='mpiexec' P4EST_MPIRUN_FALSE='#' P4EST_MPIRUN_TRUE='' P4EST_MPI_TEST_FLAGS='-n 2' P4EST_PETSC_INCLUDE_DIRS='' P4EST_PETSC_LINK_LIBS='' P4EST_PROVIDE_GETOPT_FALSE='' P4EST_PROVIDE_GETOPT_TRUE='' P4EST_PROVIDE_OBSTACK_FALSE='' P4EST_PROVIDE_OBSTACK_TRUE='' P4EST_SC_AMFLAGS='' P4EST_SC_CPPFLAGS='' P4EST_SC_LDADD='' P4EST_SC_MK_INCLUDE='' P4EST_SC_MK_USE_FALSE='' P4EST_SC_MK_USE_TRUE='' P4EST_SC_SUBDIR='' P4EST_WITH_BLAS_FALSE='' P4EST_WITH_BLAS_TRUE='' P4EST_WITH_LAPACK_FALSE='' P4EST_WITH_LAPACK_TRUE='' P4EST_WITH_METIS_FALSE='' P4EST_WITH_METIS_TRUE='' P4EST_WITH_PETSC_FALSE='' P4EST_WITH_PETSC_TRUE='' P4EST_WITH_SC_FALSE='' P4EST_WITH_SC_TRUE='' PACKAGE='p4est' PACKAGE_BUGREPORT='info@p4est.org' PACKAGE_NAME='p4est' PACKAGE_PREFIX='P4EST' PACKAGE_STRING='p4est 2.0.7-1727' PACKAGE_TARNAME='p4est' PACKAGE_URL='' PACKAGE_VERSION='2.0.7-1727' PATH_SEPARATOR=':' PETSCARCH_PROG='' RANLIB='' SED='/usr/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='' VERSION='2.0.7-1727' ac_ct_AR='' ac_ct_CC='/usr/local/Cellar/mpich/3.4.1_1/bin/mpicc' ac_ct_CXX='' ac_ct_DUMPBIN='' ac_ct_F77='' ac_ct_FC='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='x86_64-apple-darwin19.6.0' build_alias='' build_cpu='x86_64' build_os='darwin19.6.0' build_vendor='apple' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='x86_64-apple-darwin19.6.0' host_alias='' host_cpu='x86_64' host_os='darwin19.6.0' host_vendor='apple' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/externalpackages/git.p4est/build-aux/install-sh' libdir='/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/Users/markadams/Codes/petsc/arch-macosx-gnu-kokkos-g' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs='' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "p4est" #define PACKAGE_TARNAME "p4est" #define PACKAGE_VERSION "2.0.7-1727" #define PACKAGE_STRING "p4est 2.0.7-1727" #define PACKAGE_BUGREPORT "info@p4est.org" #define PACKAGE_URL "" #define PACKAGE "p4est" #define VERSION "2.0.7-1727" #define VERSION_MAJOR 2 #define VERSION_MINOR 0 #define VERSION_POINT 7-1727 #define VTK_BINARY 1 #define ENABLE_VTK_BINARY 1 #define VTK_COMPRESSION 1 #define ENABLE_VTK_COMPRESSION 1 #define BUILD_2D 1 #define ENABLE_BUILD_2D 1 #define BUILD_3D 1 #define ENABLE_BUILD_3D 1 #define BUILD_P6EST 1 #define ENABLE_BUILD_P6EST 1 #define MPI 1 #define ENABLE_MPI 1 #define MPIIO 1 #define ENABLE_MPIIO 1 #define ENABLE_MPITHREAD 1 configure: exit 1 **** Configure header /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_Alignx(a,b) #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_DO_NOT_SWAP_CHILD_FOR_DEBUGGER 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CLOSURE 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPICH_NUMVERSION 30401300 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE MPIR_CVAR_CH3 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VALGRIND 1 #define PETSC_HAVE_VALGRIND_DARWIN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VIENNACL_NO_CUDA 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HDF5_HAVE_PARALLEL 1 #define PETSC_HDF5_HAVE_ZLIB 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_MAX_PATH_LEN 1024 #define PETSC_MEMALIGN 16 #define PETSC_MISSING_LAPACK_lsame 1 #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_PYTHON_EXE "/Users/markadams/opt/miniconda2/bin/python" #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_DEBUGGER "lldb" #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_VERSION_BRANCH_GIT "adams/landau-gpu-opt" #define PETSC_VERSION_DATE_GIT "2021-03-22 17:32:58 -0400" #define PETSC_VERSION_GIT "v3.14.5-868-g428b46273f" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #endif **** C specific Configure header /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-YfDFUG/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Error running configure on P4EST ******************************************************************************* File "/Users/markadams/Codes/petsc/config/configure.py", line 458, in petsc_configure framework.configure(out = sys.stdout) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/framework.py", line 1287, in configure self.processChildren() File "/Users/markadams/Codes/petsc/config/BuildSystem/config/framework.py", line 1275, in processChildren self.serialEvaluation(self.childGraph) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/framework.py", line 1250, in serialEvaluation child.configure() File "/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py", line 1146, in configure self.executeTest(self.configureLibrary) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/base.py", line 138, in executeTest ret = test(*args,**kargs) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py", line 904, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py", line 478, in generateGuesses d = self.checkDownload() File "/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py", line 612, in checkDownload return self.getInstallDir() File "/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py", line 367, in getInstallDir installDir = self.Install() File "/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py", line 1669, in Install raise RuntimeError('Error running configure on ' + self.PACKAGE) ================================================================================ Finishing configure run at Tue, 23 Mar 2021 09:37:42 -0400 ================================================================================